Index (Bio-Formats API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

A4_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
A5_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
abort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
AbortableHSSFListener - Class in loci.poi.hssf.eventusermodel: Interface for use with the HSSFRequest and HSSFEventFactory.
AbortableHSSFListener() - Constructor for class loci.poi.hssf.eventusermodel.AbortableHSSFListener
abortableProcessEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory: Processes a DocumentInputStream into essentially Record events.
abortableProcessRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener: Process an HSSF Record.
abortableProcessWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory: Processes a file into essentially record events.
About - Class in loci.plugins: Displays a small information dialog about the Bio-Formats Plugins package.
About() - Constructor for class loci.plugins.About
about() - Static method in class loci.plugins.About
abs() - Method in class loci.plugins.util.RecordedImageProcessor
AbstractEscherHolderRecord - Class in loci.poi.hssf.record: The escher container record is used to hold escher records.
AbstractEscherHolderRecord() - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord
AbstractEscherHolderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord: Constructs a Bar record and sets its fields appropriately.
AbstractFunctionPtg - Class in loci.poi.hssf.record.formula: This class provides the base functionality for Excel sheet functions There are two kinds of function Ptgs - tFunc and tFuncVar Therefore, this class will have ONLY two subclasses
AbstractFunctionPtg() - Constructor for class loci.poi.hssf.record.formula.AbstractFunctionPtg
AbstractNIOHandle - Class in loci.common: A wrapper for buffered NIO logic that implements the IRandomAccess interface.
AbstractNIOHandle() - Constructor for class loci.common.AbstractNIOHandle
AbstractOMEModelObject - Class in ome.xml.model
AbstractOMEModelObject() - Constructor for class ome.xml.model.AbstractOMEModelObject
AbstractOMEXMLMetadata - Class in loci.formats.ome: Source code: Trac, Gitweb
AbstractOMEXMLMetadata() - Constructor for class loci.formats.ome.AbstractOMEXMLMetadata
AbstractOMEXMLMetadata - Class in ome.xml.meta: A utility class for constructing and manipulating OME-XML DOMs.
AbstractOMEXMLMetadata() - Constructor for class ome.xml.meta.AbstractOMEXMLMetadata: Creates a new OME-XML metadata object.
AbstractService - Class in loci.common.services: Source code: Trac, Gitweb
AbstractService() - Constructor for class loci.common.services.AbstractService
AbstractShape - Class in loci.poi.hssf.model: An abstract shape is the lowlevel model for a shape.
AbstractShape() - Constructor for class loci.poi.hssf.model.AbstractShape
accept(File) - Method in class loci.formats.gui.ComboFileFilter: Accepts files with the proper filename prefix.
accept(File) - Method in class loci.formats.gui.ExtensionFileFilter: Accepts files with the proper extensions.
accept(File) - Method in class loci.formats.gui.FormatFileFilter: Accepts files in accordance with the file format reader.
accept(File) - Method in class loci.formats.gui.NoExtensionFileFilter: Accepts files with no extension.
accept(String) - Method in class loci.formats.NumberFilter: Tests if a specified file should be included in a file list.
accept(File) - Method in class loci.formats.NumberFilter: Tests if a specified file should be included in a file list.
accumulate - Variable in class loci.formats.in.SDTInfo
AcquisitionMode - Enum in ome.xml.model.enums
AcquisitionModeEnumHandler - Class in ome.xml.model.enums.handlers: Enumeration handler for AcquisitionMode.
AcquisitionModeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
actionPerformed(ActionEvent) - Method in class loci.formats.gui.CacheComponent: Handles combo box changes.
actionPerformed(ActionEvent) - Method in class loci.formats.gui.DataConverter
actionPerformed(ActionEvent) - Method in class loci.formats.gui.ImageViewer: Handles menu commands.
actionPerformed(ActionEvent) - Method in class loci.formats.tools.EditTiffG
actionPerformed(ActionEvent) - Method in class loci.plugins.config.ConfigWindow
actionPerformed(ActionEvent) - Method in class loci.plugins.in.SeriesDialog
actionPerformed(ActionEvent) - Method in class loci.plugins.shortcut.ShortcutPanel: Handles button presses.
actionPerformed(ActionEvent) - Method in class loci.plugins.util.DataBrowser
actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow
ACTIVE_PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
ACTIVE_PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
ACTIVE_PANE_UPER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
ACTIVE_PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
activeSrcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The height of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.
activeSrcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The X coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.
activeSrcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The Y coordinate of the upper-left source pixel that will actually be copied into the destination image, taking into account all subsampling, offsetting, and clipping.
activeSrcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The width of the source region that will actually be copied into the destination image, taking into account all susbampling, offsetting, and clipping.
adcDE - Variable in class loci.formats.in.SDTInfo: ADC sample delay (SPC-930).
adcRE - Variable in class loci.formats.in.SDTInfo
adcZoom - Variable in class loci.formats.in.SDTInfo
add(byte) - Method in class loci.formats.codec.ByteVector
add(byte[]) - Method in class loci.formats.codec.ByteVector
add(byte[], int, int) - Method in class loci.formats.codec.ByteVector
add(double) - Method in class loci.plugins.util.RecordedImageProcessor
add(int) - Method in class loci.plugins.util.RecordedImageProcessor
add(int, Record) - Method in class loci.poi.hssf.model.WorkbookRecordList
add(int, double) - Method in class loci.poi.util.DoubleList: add the specfied value at the specified index
add(double) - Method in class loci.poi.util.DoubleList: Appends the specified element to the end of this list
add(int, int) - Method in class loci.poi.util.IntList: add the specfied value at the specified index
add(int) - Method in class loci.poi.util.IntList: Appends the specified element to the end of this list
add(Object) - Method in class loci.poi.util.IntMapper: Appends the specified element to the end of this list
add(int, short) - Method in class loci.poi.util.ShortList: add the specfied value at the specified index
add(short) - Method in class loci.poi.util.ShortList: Appends the specified element to the end of this list
add1DBits(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor: Get code for run and add to compressed bitstream.
add2DBits(byte[], int, int[][], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor: Place entry from mode table into compressed bitstream.
addAll(DoubleList) - Method in class loci.poi.util.DoubleList: Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.
addAll(int, DoubleList) - Method in class loci.poi.util.DoubleList: Inserts all of the elements in the specified collection into this list at the specified position.
addAll(IntList) - Method in class loci.poi.util.IntList: Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.
addAll(int, IntList) - Method in class loci.poi.util.IntList: Inserts all of the elements in the specified collection into this list at the specified position.
addAll(ShortList) - Method in class loci.poi.util.ShortList: Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.
addAll(int, ShortList) - Method in class loci.poi.util.ShortList: Inserts all of the elements in the specified collection into this list at the specified position.
addAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam: Adds a TIFFTagSet object to the list of allowed tag sets.
addArea(int, short, int, short) - Method in class loci.poi.hssf.record.MergeCellsRecord: Add an area to consider a merged cell.
addBinData(BinData) - Method in class ome.xml.model.Mask
addBinData(BinData) - Method in class ome.xml.model.Pixels
addBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addBreak(short, short, short) - Method in class loci.poi.hssf.record.PageBreakRecord: Adds the page break at the specified parameters
addBSERecord(EscherBSERecord) - Method in class loci.poi.hssf.model.Workbook
addByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer: Adds the specified data to the end of the byte array stream.
addCacheListener(CacheListener) - Method in class loci.formats.cache.Cache
addCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter: Adds a listener for status update events.
addCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy
addCellOffset(short) - Method in class loci.poi.hssf.record.DBCellRecord
addChannel(Channel) - Method in class ome.xml.model.Pixels
addChar(char, int) - Method in class loci.poi.hssf.usermodel.FontDetails
addChars(char[], int[]) - Method in class loci.poi.hssf.usermodel.FontDetails
AddCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
addCheckbox(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog: Adds a checkbox to the given dialog object corresponding to the boolean option identified by the specified key.
addChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty: Add a new child to the collection of children
addChild(Property) - Method in interface loci.poi.poifs.property.Parent: Add a new child to the collection of children
addChildRecord(EscherRecord) - Method in class loci.poi.ddf.EscherContainerRecord
addChildRecord(EscherRecord) - Method in class loci.poi.ddf.UnknownEscherRecord
addChoice(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog: Adds a choice to the given dialog object corresponding to the string option identified by the specified key.
addClass(Class<? extends T>) - Method in class loci.formats.ClassList: Adds the given class, which must be assignable to the base class, to the list.
addCluster(int, int) - Method in class loci.poi.ddf.EscherDggRecord
addColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette: Adds a new color into an empty color slot.
addColumn(Object) - Method in class mdbtools.dbengine.sql.Select
addComment(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
addCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addDataset(Dataset) - Method in class ome.xml.model.OME
addDbcell(int) - Method in class loci.poi.hssf.record.IndexRecord
addDetector(Detector) - Method in class ome.xml.model.Instrument
addDichroic(Dichroic) - Method in class ome.xml.model.Instrument
addDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addEntry(Comparable<Object>, DefaultListModel) - Static method in class loci.plugins.config.ConfigWindow
addEOFB(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor: Add an End-of-Facsimile-Block (EOFB == 0x001001) to the compressed bitstream.
addEOL(boolean, boolean, boolean, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor: Add an End-of-Line (EOL == 0x001) to the compressed bitstream with optional byte alignment.
addEscherProperty(EscherProperty) - Method in class loci.poi.ddf.EscherOptRecord: Add a property to this record.
addEscherRecord(int, EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
addEscherRecord(EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
addExperiment(Experiment) - Method in class ome.xml.model.OME
addExperimenter(Experimenter) - Method in class ome.xml.model.OME
addExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME
addFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addFilter(Filter) - Method in class ome.xml.model.Instrument
addFilterSet(FilterSet) - Method in class ome.xml.model.Instrument
addFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString: Adds a font run to the formatted string.
addGlobalMeta(String, Object) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, boolean) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, byte) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, short) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, int) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, long) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, float) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, double) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMeta(String, char) - Method in class loci.formats.FormatReader: Adds an entry to the global metadata table.
addGlobalMetaList(String, Object) - Method in class loci.formats.FormatReader
addGroupBy(FQColumn) - Method in class mdbtools.dbengine.sql.Select
addImage(Image) - Method in class ome.xml.model.OME
addInfoRecord(ExtSSTInfoSubRecord) - Method in class loci.poi.hssf.record.ExtSSTRecord
addInstrument(Instrument) - Method in class ome.xml.model.OME
addLightSource(LightSource) - Method in class ome.xml.model.Instrument
addLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation
addListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addListener(HSSFListener, short) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest: add an event listener for a particular record type.
addListenerForAllRecords(HSSFListener) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest: This is the equivilent of calling addListener(myListener, sid) for EVERY record in the loci.poi.hssf.record package.
addLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addMergedRegion(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet
addMergedRegion(Region) - Method in class loci.poi.hssf.usermodel.HSSFSheet: adds a merged region of cells (hence those cells form one)
addMeta(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader: Adds an entry to the specified Hashtable.
addMetadataOnly(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService: Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.
addMetadataOnly(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment
addModelObject(String, OMEModelObject) - Method in interface ome.xml.model.OMEModel
addModelObject(String, OMEModelObject) - Method in class ome.xml.model.OMEModelImpl
addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in interface loci.formats.services.OMEXMLService: Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.
addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
addName(NameRecord) - Method in class loci.poi.hssf.model.Workbook: creates new name
addNode(Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
addNTP(int, int) - Method in class jj2000.j2k.codestream.reader.CBlkInfo: Adds the number of new truncation for specified layer.
addObjective(Objective) - Method in class ome.xml.model.Instrument
addOptPoint(float, int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo: Adds a new optimization point, with target bitrate 'brate' and with 'elyrs' (unoptimized) extra layers after it.
addOrderBy(OrderBy) - Method in class mdbtools.dbengine.sql.Select
addPicture(byte[], int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: Adds a picture to the workbook.
addPlane(Plane) - Method in class ome.xml.model.Pixels
addPlate(Plate) - Method in class ome.xml.model.OME
addPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate
addPossible(String) - Method in class loci.plugins.prefs.StringOption: Adds a possible value to the list.
addProject(Project) - Method in class ome.xml.model.OME
addProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable: Add a property to the list of properties we manage
AddPtg - Class in loci.poi.hssf.record.formula: Addition operator PTG the "+" binomial operator.
AddPtg() - Constructor for class loci.poi.hssf.record.formula.AddPtg: Creates new AddPtg
AddPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AddPtg
addReagent(Reagent) - Method in class ome.xml.model.Screen
addReference(OMEModelObject, Reference) - Method in interface ome.xml.model.OMEModel
addReference(OMEModelObject, Reference) - Method in class ome.xml.model.OMEModelImpl
addREFRecord(ExternSheetSubRecord) - Method in class loci.poi.hssf.record.ExternSheetRecord: adds REF struct (ExternSheetSubRecord)
addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
addROI(ROI) - Method in class ome.xml.model.OME
addRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet: Adds a row record to the sheet
addRow(Object[]) - Method in class mdbtools.dbengine.MemoryData: Add a row of data
addScreen(Screen) - Method in class ome.xml.model.OME
addScrollBars(Container) - Static method in class loci.plugins.util.WindowTools: Adds AWT scroll bars to the given container.
addSection(Section) - Method in class loci.poi.hpsf.MutablePropertySet: Adds a section to this property set.
addSection(Section) - Method in class loci.poi.hpsf.SpecialPropertySet
addSeriesMeta(String, Object) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, boolean) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, byte) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, short) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, int) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, long) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, float) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, double) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMeta(String, char) - Method in class loci.formats.FormatReader: Adds an entry to the metadata table for the current series.
addSeriesMetaList(String, Object) - Method in class loci.formats.FormatReader
addShape(Shape) - Method in class ome.xml.model.Union
addSheetReference(String, int) - Method in class loci.poi.hssf.util.SheetReferences
addShortOrLongField(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
addSSTString(UnicodeString) - Method in class loci.poi.hssf.model.Workbook: Adds a string to the SST table and returns its index (if its a duplicate just returns its index and update the counts) ASSUMES compressed unicode (meaning 8bit)
addSSTString(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: Deprecated.
Do not call this method from your applications. Use the methods available in the HSSFRow to add string HSSFCells
addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.AbstractShape: Add standard properties to the opt record.
addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.CommentShape: Sets standard escher options for a comment.
addStatusListener(StatusListener) - Method in interface loci.common.StatusReporter
addStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader
addStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess
addString(UnicodeString) - Method in class loci.poi.hssf.record.SSTRecord: Add a string.
addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor: Add a new string to the string table.
addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor: Add a new string to the string table.
addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil: Add a new string to the string table.
addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil: Add a new string to the string table.
addSubRecord(int, Object) - Method in class loci.poi.hssf.record.ObjRecord
addSubRecord(Object) - Method in class loci.poi.hssf.record.ObjRecord
addTable(Object) - Method in class mdbtools.dbengine.sql.Select
addTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory: Adds an element to the group of TIFFTagSets of which this directory is aware.
addTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addTiffData(TiffData) - Method in class ome.xml.model.Pixels
addTIFFField(TIFFField) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory: Adds a TIFF field to the directory.
addTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations
addValueName(int, String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag: Adds a mnemonic name for a particular value that this tag's data may take on.
addValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet: Adds a value record to the sheet's contained binary records (i.e.
addWell(Well) - Method in class ome.xml.model.Plate
addWellSample(WellSample) - Method in class ome.xml.model.Well
addXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations
adjustmentValueChanged(AdjustmentEvent) - Method in class loci.plugins.util.DataBrowser
AffineTransform - Class in ome.xml.model
AffineTransform() - Constructor for class ome.xml.model.AffineTransform: Default constructor.
AffineTransform(Element, OMEModel) - Constructor for class ome.xml.model.AffineTransform: Constructs AffineTransform recursively from an XML DOM tree.
AffineTransform(AffineTransform) - Constructor for class ome.xml.model.AffineTransform: Copy constructor.
AFIReader - Class in loci.formats.in: AFIReader is the file format reader for Aperio AFI files.
AFIReader() - Constructor for class loci.formats.in.AFIReader: Constructs a new AFI reader.
afterRecordSerialize(int, short, int, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener: Fired after a record has been serialized.
afterRecordSerialize(int, short, int, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
Aggregate - Interface in mdbtools.dbengine.functions
aggregateDrawingRecords(DrawingManager2) - Method in class loci.poi.hssf.model.Sheet
AggregateMetadata - Class in ome.xml.meta: A metadata store which delegates the actual storage to one or more sub metadata stores.
AggregateMetadata(List<BaseMetadata>) - Constructor for class ome.xml.meta.AggregateMetadata: Creates a new instance.
AggregateQuery - Class in mdbtools.dbengine.tasks: resolve the columns, num rows not the same
AggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.AggregateQuery
AIMReader - Class in loci.formats.in: AIMReader is the file format reader for .aim files.
AIMReader() - Constructor for class loci.formats.in.AIMReader: Constructs a new AIM reader.
AL3D_MAGIC_STRING - Static variable in class loci.formats.in.AliconaReader
AliconaReader - Class in loci.formats.in: AliconaReader is the file format reader for Alicona AL3D files.
AliconaReader() - Constructor for class loci.formats.in.AliconaReader: Constructs a new Alicona reader.
ALIGN_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: center horizontal alignment
ALIGN_CENTER_SELECTION - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: center-selection? horizontal alignment
ALIGN_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: fill? horizontal alignment
ALIGN_GENERAL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: general (normal) horizontal alignment
ALIGN_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: justified horizontal alignment
ALIGN_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: left-justified horizontal alignment
ALIGN_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: right-justified horizontal alignment
ALL_DOMAINS - Static variable in class loci.formats.FormatTools: List of all supported domains.
allBlockLengths - Variable in class loci.formats.in.SDTInfo
allBlockOffsets - Variable in class loci.formats.in.SDTInfo
allocate(int...) - Static method in class loci.common.DataTools: Allocates a 1-dimensional byte array matching the product of the given sizes.
allocate(long, int) - Method in class loci.common.NIOByteBufferProvider: Allocates or maps the desired file data into memory.
allocateDirect(long, int) - Method in class loci.common.NIOByteBufferProvider: Allocates memory and copies the desired file data into it.
allocateMappedByteBuffer(long, int) - Method in class loci.common.NIOByteBufferProvider: Memory maps the desired file data into memory.
allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager: Allocates new shape id for the new drawing group id.
allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager2: Allocates new shape id for the new drawing group id.
allocateSpace(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter: Allocate space for a block of indices
allowShow - Variable in class loci.plugins.util.DataBrowser
ALPHA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7: The value of the first lifting step coefficient
ALPHA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7: The value of the first lifting step coefficient
alphabeticIndexCount(String) - Static method in class loci.formats.ResourceNamer
alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
alreadyChecked() - Method in class loci.formats.UpgradeChecker: Return true if an upgrade check has already been performed in this JVM session.
ALT_BARS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
ALT_BARS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: Wide dots
alt_pg_buf - Variable in class mdbtools.libmdb.MdbHandle
ALT_ZVI - Static variable in class loci.common.DateTools
ALT_ZVI_EPOCH - Static variable in class loci.common.DateTools
ALTITUDE_REF_SEA_LEVEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet: A value to be used with the "GPSAltitudeRef" tag.
ALTITUDE_REF_SEA_LEVEL_REFERENCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet: A value to be used with the "GPSAltitudeRef" tag.
AmiraParameters - Class in loci.formats.tools: AmiraParameters handles parsing and writing of AmiraMesh headers.
AmiraParameters(String) - Constructor for class loci.formats.tools.AmiraParameters
AmiraParameters(RandomAccessInputStream) - Constructor for class loci.formats.tools.AmiraParameters
AmiraReader - Class in loci.formats.in: This is a file format reader for AmiraMesh data.
AmiraReader() - Constructor for class loci.formats.in.AmiraReader
analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter: Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.
analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat: A specific version of the analyze_hpf() method that works on int data.
analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat: The general version of the analyze_hpf() method, it just calls the specialized version.
analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7: An implementation of the analyze_hpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.
analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt: A specific version of the analyze_hpf() method that works on int data.
analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt: The general version of the analyze_hpf() method, it just calls the specialized version.
analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3: An implementation of the analyze_hpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.
analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter: Filters the input signal by this analysis filter, decomposing it in a low-pass and a high-pass signal.
analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat: A specific version of the analyze_lpf() method that works on int data.
analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat: The general version of the analyze_lpf() method, it just calls the specialized version.
analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7: An implementation of the analyze_lpf() method that works on int data, for the forward 9x7 wavelet transform using the lifting scheme.
analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt: A specific version of the analyze_lpf() method that works on int data.
analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt: The general version of the analyze_lpf() method, it just calls the specialized version.
analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3: An implementation of the analyze_lpf() method that works on int data, for the forward 5x3 wavelet transform using the lifting scheme.
AnalyzeReader - Class in loci.formats.in: AnalyzeReader is the file format reader for Analyze 7.5 files.
AnalyzeReader() - Constructor for class loci.formats.in.AnalyzeReader: Constructs a new Analyze reader.
anbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: Actual number of read bytes
ANCHOR_ID_CHART_TITLE - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
ANCHOR_ID_SERIES_OR_POINT - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
ANCHOR_ID_X_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
ANCHOR_ID_Y_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
ANCHOR_ID_Z_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
and(int) - Method in class loci.plugins.util.RecordedImageProcessor
AND - Static variable in class mdbtools.dbengine.sql.Condition
anGainExp - Variable in class jj2000.j2k.wavelet.Subband: The base 2 exponent of the analysis gain of the subband.
anim - Variable in class loci.formats.gui.ImageViewer
anim - Variable in class loci.plugins.util.DataBrowser
animate - Variable in class loci.plugins.util.DataBrowser
ANIMATION_KEY - Static variable in class loci.formats.gui.ImageViewer
Annotation - Class in ome.xml.model
Annotation() - Constructor for class ome.xml.model.Annotation: Default constructor.
Annotation(Element, OMEModel) - Constructor for class ome.xml.model.Annotation: Constructs Annotation recursively from an XML DOM tree.
Annotation(Annotation) - Constructor for class ome.xml.model.Annotation: Copy constructor.
AnnotationRef - Class in ome.xml.model
AnnotationRef() - Constructor for class ome.xml.model.AnnotationRef: Default constructor.
AnnotationRef(Element, OMEModel) - Constructor for class ome.xml.model.AnnotationRef: Constructs AnnotationRef recursively from an XML DOM tree.
AnnotationRef(AnnotationRef) - Constructor for class ome.xml.model.AnnotationRef: Copy constructor.
ANO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
ANSI_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont: ANSI character set
AnWTFilter - Class in jj2000.j2k.wavelet.analysis: This abstract class defines the methods of all analysis wavelet filters.
AnWTFilter() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilter
AnWTFilterFloat - Class in jj2000.j2k.wavelet.analysis: This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for float data specifically.
AnWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
AnWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.analysis: This class inherits from the analysis wavelet filter definition for int data.
AnWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
AnWTFilterInt - Class in jj2000.j2k.wavelet.analysis: This extends the analysis wavelet filter general definitions of AnWTFilter by adding methods that work for int data specifically.
AnWTFilterInt() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterInt
AnWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.analysis: This class inherits from the analysis wavelet filter definition for int data.
AnWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
AnWTFilterSpec - Class in jj2000.j2k.wavelet.analysis: This class extends ModuleSpec class for analysis filters specification holding purpose.
AnWTFilterSpec(int, int, byte, QuantTypeSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterSpec: Constructs a new 'AnWTFilterSpec' for the specified number of components and tiles.
APERIO_IMAGE_DESCRIPTION_PREFIX - Static variable in class loci.formats.in.SVSReader: TIFF image description prefix for Aperio SVS files.
APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD
APLReader - Class in loci.formats.in: APLReader is the file format reader for Olympus APL files.
APLReader() - Constructor for class loci.formats.in.APLReader: Constructs a new APL reader.
APNGReader - Class in loci.formats.in: APNGReader is the file format reader for Animated Portable Network Graphics (APNG) images.
APNGReader() - Constructor for class loci.formats.in.APNGReader: Constructs a new APNGReader.
APNGWriter - Class in loci.formats.out: APNGWriter is the file format writer for PNG and APNG files.
APNGWriter() - Constructor for class loci.formats.out.APNGWriter
append(ILoggingEvent) - Method in class loci.plugins.util.IJStatusEchoer
appendChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
appendServerMap(String, String) - Static method in class loci.formats.in.FlexReader: Add the path 'realName' to the mapping for the server named 'alias'.
applicationData - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
applicationIDs - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
applyCalibration(ImagePlus) - Method in class loci.plugins.in.Calibrator: Applies spatial calibrations to an image stack.
applyColors(List<ImagePlus>) - Method in class loci.plugins.in.Colorizer
applyFont(int, int, short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString: Applies a font to the specified characters of a string.
applyFont(int, int, HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString: Applies a font to the specified characters of a string.
applyFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString: Sets the font of the entire string.
applyFont(short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString: Applies the specified font to the entire string.
applyMethodStack(List<RecordedImageProcessor.MethodEntry>) - Method in class loci.plugins.util.RecordedImageProcessor
applyTable(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
arate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: Actual decoding rate in bpp
ArbROIMaskGenerator - Class in jj2000.j2k.roi.encoder: This class generates the ROI bit-mask when, at least, one ROI is not rectangular.
ArbROIMaskGenerator(ROI[], int, Quantizer) - Constructor for class jj2000.j2k.roi.encoder.ArbROIMaskGenerator: The constructor of the arbitrary mask generator
arbShape - Variable in class jj2000.j2k.roi.encoder.ROI: Where or not the ROI shape is arbitrary
Arc - Class in ome.xml.model
Arc() - Constructor for class ome.xml.model.Arc: Default constructor.
Arc(Element, OMEModel) - Constructor for class ome.xml.model.Arc: Constructs Arc recursively from an XML DOM tree.
Arc(Arc) - Constructor for class ome.xml.model.Arc: Copy constructor.
ARCHIVE - Static variable in class loci.formats.in.FlexReader
ArcType - Enum in ome.xml.model.enums
ArcTypeEnumHandler - Class in ome.xml.model.enums.handlers: Enumeration handler for ArcType.
ArcTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ArcTypeEnumHandler
Area3DPtg - Class in loci.poi.hssf.record.formula: Title: Area 3D Ptg - 3D referecnce (Sheet + Area)
Area3DPtg() - Constructor for class loci.poi.hssf.record.formula.Area3DPtg: Creates new AreaPtg
Area3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
Area3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
AreaAPtg - Class in loci.poi.hssf.record.formula: Specifies a rectangular area of cells A1:A4 for instance.
AreaAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
AreaAPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
AreaAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
AreaErrPtg - Class in loci.poi.hssf.record.formula: AreaErr - handles deleted cell area references.
AreaErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg
AreaFormatRecord - Class in loci.poi.hssf.record: The area format record is used to define the colours and patterns for an area.
AreaFormatRecord() - Constructor for class loci.poi.hssf.record.AreaFormatRecord
AreaFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaFormatRecord: Constructs a AreaFormat record and sets its fields appropriately.
AreaNAPtg - Class in loci.poi.hssf.record.formula: Specifies a rectangular area of cells A1:A4 for instance.
AreaNAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
AreaNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
AreaNPtg - Class in loci.poi.hssf.record.formula: Specifies a rectangular area of cells A1:A4 for instance.
AreaNPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
AreaNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
AreaNVPtg - Class in loci.poi.hssf.record.formula: Specifies a rectangular area of cells A1:A4 for instance.
AreaNVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
AreaNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
AreaPtg - Class in loci.poi.hssf.record.formula: Specifies a rectangular area of cells A1:A4 for instance.
AreaPtg() - Constructor for class loci.poi.hssf.record.formula.AreaPtg
AreaPtg(String) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
AreaPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
AreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
AreaRecord - Class in loci.poi.hssf.record: The area record is used to define a area chart.
AreaRecord() - Constructor for class loci.poi.hssf.record.AreaRecord
AreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaRecord: Constructs a Area record and sets its fields appropriately.
AreaReference - Class in loci.poi.hssf.util
AreaReference(String) - Constructor for class loci.poi.hssf.util.AreaReference: Create an area ref from a string representation
AreaVPtg - Class in loci.poi.hssf.record.formula: Specifies a rectangular area of cells A1:A4 for instance.
AreaVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
AreaVPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
AreaVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
ARFReader - Class in loci.formats.in: ARFReader is the file format reader for Axon Raw Format (ARF) files, produced by INDEC BioSystems's Imaging Workbench software.
ARFReader() - Constructor for class loci.formats.in.ARFReader: Constructs a new ARF reader.
arg - Variable in class loci.plugins.LociExporter: Argument passed to setup method.
args - Static variable in class loci.plugins.shortcut.ShortcutPanel: Details for installed plugins.
arraycopy(byte[], int, byte[], int, int) - Static method in class loci.poi.util.ArrayUtil: This is really a debugging version of System.arraycopy().
arrayMoveWithin(Object[], int, int, int) - Static method in class loci.poi.util.ArrayUtil: Moves a number of entries in an array to another point in the array, shifting those inbetween as required.
ArrayPtg - Class in loci.poi.hssf.record.formula: ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.
ArrayPtg() - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
ArrayPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
ArrayPtgA - Class in loci.poi.hssf.record.formula: ArrayPtgA - handles arrays
ArrayPtgA() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
ArrayPtgA(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
ArrayPtgV - Class in loci.poi.hssf.record.formula: ArrayPtg - handles arrays The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only includes the Ptg sid and the reserved bytes.
ArrayPtgV() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
ArrayPtgV(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
ArrayUtil - Class in jj2000.j2k.util: This class contains a colleaction of utility static methods for arrays.
ArrayUtil() - Constructor for class jj2000.j2k.util.ArrayUtil
ArrayUtil - Class in loci.poi.util: Utility classes for dealing with arrays.
ArrayUtil() - Constructor for class loci.poi.util.ArrayUtil
ARTIST - Static variable in class loci.formats.tiff.IFD
ascii - Variable in class loci.formats.tools.AmiraParameters
AsciiImage - Class in loci.formats.tools: A utility class for outputting a BufferedImage as ASCII text.
AsciiImage(BufferedImage) - Constructor for class loci.formats.tools.AsciiImage
asDateTime(DateTimeZone) - Method in class ome.xml.model.primitives.Timestamp: Returns the timestamp as a Joda DateTime type.
asInstant() - Method in class ome.xml.model.primitives.Timestamp: Returns the timestamp as a Joda DateTime type.
asRetrieve(MetadataStore) - Method in interface loci.formats.services.OMEXMLService: Gets the given MetadataStore object as a MetadataRetrieve.
asRetrieve(MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
assertId(String, boolean, int) - Static method in class loci.formats.FormatTools: Asserts that the current file is either null, or not, according to the given flag.
assoicateShapeToObjRecord(EscherRecord, Record) - Method in class loci.poi.hssf.record.EscherAggregate: Associates an escher record to an OBJ record or a TXO record.
asStore(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService: Gets the given MetadataRetrieve object as a MetadataStore.
asStore(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
ASTRONOMY_DOMAIN - Static variable in class loci.formats.FormatTools: Identifies the astronomy domain.
asXMLElement(Document) - Method in class ome.xml.model.AbstractOMEModelObject
asXMLElement(Document, Element) - Method in class ome.xml.model.AbstractOMEModelObject: Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
asXMLElement(Document) - Method in class ome.xml.model.AffineTransform
asXMLElement(Document, Element) - Method in class ome.xml.model.AffineTransform
asXMLElement(Document) - Method in class ome.xml.model.Annotation
asXMLElement(Document, Element) - Method in class ome.xml.model.Annotation
asXMLElement(Document) - Method in class ome.xml.model.AnnotationRef
asXMLElement(Document, Element) - Method in class ome.xml.model.AnnotationRef
asXMLElement(Document) - Method in class ome.xml.model.Arc
asXMLElement(Document, Element) - Method in class ome.xml.model.Arc
asXMLElement(Document) - Method in class ome.xml.model.BasicAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.BasicAnnotation
asXMLElement(Document) - Method in class ome.xml.model.BinaryFile
asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryFile
asXMLElement(Document) - Method in class ome.xml.model.BinaryOnly
asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryOnly
asXMLElement(Document) - Method in class ome.xml.model.BinData
asXMLElement(Document, Element) - Method in class ome.xml.model.BinData
asXMLElement(Document) - Method in class ome.xml.model.BooleanAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.BooleanAnnotation
asXMLElement(Document) - Method in class ome.xml.model.Channel
asXMLElement(Document, Element) - Method in class ome.xml.model.Channel
asXMLElement(Document) - Method in class ome.xml.model.ChannelRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ChannelRef
asXMLElement(Document) - Method in class ome.xml.model.CommentAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.CommentAnnotation
asXMLElement(Document) - Method in class ome.xml.model.Dataset
asXMLElement(Document, Element) - Method in class ome.xml.model.Dataset
asXMLElement(Document) - Method in class ome.xml.model.DatasetRef
asXMLElement(Document, Element) - Method in class ome.xml.model.DatasetRef
asXMLElement(Document) - Method in class ome.xml.model.Detector
asXMLElement(Document, Element) - Method in class ome.xml.model.Detector
asXMLElement(Document) - Method in class ome.xml.model.DetectorSettings
asXMLElement(Document, Element) - Method in class ome.xml.model.DetectorSettings
asXMLElement(Document) - Method in class ome.xml.model.Dichroic
asXMLElement(Document, Element) - Method in class ome.xml.model.Dichroic
asXMLElement(Document) - Method in class ome.xml.model.DichroicRef
asXMLElement(Document, Element) - Method in class ome.xml.model.DichroicRef
asXMLElement(Document) - Method in class ome.xml.model.DoubleAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.DoubleAnnotation
asXMLElement(Document) - Method in class ome.xml.model.Ellipse
asXMLElement(Document, Element) - Method in class ome.xml.model.Ellipse
asXMLElement(Document) - Method in class ome.xml.model.EmissionFilterRef
asXMLElement(Document, Element) - Method in class ome.xml.model.EmissionFilterRef
asXMLElement(Document) - Method in class ome.xml.model.ExcitationFilterRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ExcitationFilterRef
asXMLElement(Document) - Method in class ome.xml.model.Experiment
asXMLElement(Document, Element) - Method in class ome.xml.model.Experiment
asXMLElement(Document) - Method in class ome.xml.model.Experimenter
asXMLElement(Document, Element) - Method in class ome.xml.model.Experimenter
asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroup
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroup
asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroupRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroupRef
asXMLElement(Document) - Method in class ome.xml.model.ExperimenterRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterRef
asXMLElement(Document) - Method in class ome.xml.model.ExperimentRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimentRef
asXMLElement(Document) - Method in class ome.xml.model.External
asXMLElement(Document, Element) - Method in class ome.xml.model.External
asXMLElement(Document) - Method in class ome.xml.model.Filament
asXMLElement(Document, Element) - Method in class ome.xml.model.Filament
asXMLElement(Document) - Method in class ome.xml.model.FileAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.FileAnnotation
asXMLElement(Document) - Method in class ome.xml.model.Filter
asXMLElement(Document, Element) - Method in class ome.xml.model.Filter
asXMLElement(Document) - Method in class ome.xml.model.FilterRef
asXMLElement(Document, Element) - Method in class ome.xml.model.FilterRef
asXMLElement(Document) - Method in class ome.xml.model.FilterSet
asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSet
asXMLElement(Document) - Method in class ome.xml.model.FilterSetRef
asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSetRef
asXMLElement(Document) - Method in class ome.xml.model.Image
asXMLElement(Document, Element) - Method in class ome.xml.model.Image
asXMLElement(Document) - Method in class ome.xml.model.ImageRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ImageRef
asXMLElement(Document) - Method in class ome.xml.model.ImagingEnvironment
asXMLElement(Document, Element) - Method in class ome.xml.model.ImagingEnvironment
asXMLElement(Document) - Method in class ome.xml.model.Instrument
asXMLElement(Document, Element) - Method in class ome.xml.model.Instrument
asXMLElement(Document) - Method in class ome.xml.model.InstrumentRef
asXMLElement(Document, Element) - Method in class ome.xml.model.InstrumentRef
asXMLElement(Document) - Method in class ome.xml.model.Label
asXMLElement(Document, Element) - Method in class ome.xml.model.Label
asXMLElement(Document) - Method in class ome.xml.model.Laser
asXMLElement(Document, Element) - Method in class ome.xml.model.Laser
asXMLElement(Document) - Method in class ome.xml.model.Leader
asXMLElement(Document, Element) - Method in class ome.xml.model.Leader
asXMLElement(Document) - Method in class ome.xml.model.LightEmittingDiode
asXMLElement(Document, Element) - Method in class ome.xml.model.LightEmittingDiode
asXMLElement(Document) - Method in class ome.xml.model.LightPath
asXMLElement(Document, Element) - Method in class ome.xml.model.LightPath
asXMLElement(Document, Element) - Method in class ome.xml.model.LightSource
asXMLElement(Document) - Method in class ome.xml.model.LightSourceSettings
asXMLElement(Document, Element) - Method in class ome.xml.model.LightSourceSettings
asXMLElement(Document) - Method in class ome.xml.model.Line
asXMLElement(Document, Element) - Method in class ome.xml.model.Line
asXMLElement(Document) - Method in class ome.xml.model.ListAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.ListAnnotation
asXMLElement(Document) - Method in class ome.xml.model.LongAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.LongAnnotation
asXMLElement(Document) - Method in class ome.xml.model.ManufacturerSpec
asXMLElement(Document, Element) - Method in class ome.xml.model.ManufacturerSpec
asXMLElement(Document) - Method in class ome.xml.model.Mask
asXMLElement(Document, Element) - Method in class ome.xml.model.Mask
asXMLElement(Document) - Method in class ome.xml.model.MetadataOnly
asXMLElement(Document, Element) - Method in class ome.xml.model.MetadataOnly
asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulation
asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulation
asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulationRef
asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulationRef
asXMLElement(Document) - Method in class ome.xml.model.Microscope
asXMLElement(Document, Element) - Method in class ome.xml.model.Microscope
asXMLElement(Document) - Method in class ome.xml.model.NumericAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.NumericAnnotation
asXMLElement(Document) - Method in class ome.xml.model.Objective
asXMLElement(Document, Element) - Method in class ome.xml.model.Objective
asXMLElement(Document) - Method in class ome.xml.model.ObjectiveSettings
asXMLElement(Document, Element) - Method in class ome.xml.model.ObjectiveSettings
asXMLElement(Document) - Method in class ome.xml.model.OME
asXMLElement(Document, Element) - Method in class ome.xml.model.OME
asXMLElement(Document) - Method in interface ome.xml.model.OMEModelObject: Takes the entire object hierarchy and produces an XML DOM tree.
asXMLElement(Document) - Method in class ome.xml.model.Pixels
asXMLElement(Document, Element) - Method in class ome.xml.model.Pixels
asXMLElement(Document) - Method in class ome.xml.model.Plane
asXMLElement(Document, Element) - Method in class ome.xml.model.Plane
asXMLElement(Document) - Method in class ome.xml.model.Plate
asXMLElement(Document, Element) - Method in class ome.xml.model.Plate
asXMLElement(Document) - Method in class ome.xml.model.PlateAcquisition
asXMLElement(Document, Element) - Method in class ome.xml.model.PlateAcquisition
asXMLElement(Document) - Method in class ome.xml.model.PlateRef
asXMLElement(Document, Element) - Method in class ome.xml.model.PlateRef
asXMLElement(Document) - Method in class ome.xml.model.Point
asXMLElement(Document, Element) - Method in class ome.xml.model.Point
asXMLElement(Document) - Method in class ome.xml.model.Polygon
asXMLElement(Document, Element) - Method in class ome.xml.model.Polygon
asXMLElement(Document) - Method in class ome.xml.model.Polyline
asXMLElement(Document, Element) - Method in class ome.xml.model.Polyline
asXMLElement(Document) - Method in class ome.xml.model.Project
asXMLElement(Document, Element) - Method in class ome.xml.model.Project
asXMLElement(Document) - Method in class ome.xml.model.ProjectRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ProjectRef
asXMLElement(Document) - Method in class ome.xml.model.Pump
asXMLElement(Document, Element) - Method in class ome.xml.model.Pump
asXMLElement(Document) - Method in class ome.xml.model.Reagent
asXMLElement(Document, Element) - Method in class ome.xml.model.Reagent
asXMLElement(Document) - Method in class ome.xml.model.ReagentRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ReagentRef
asXMLElement(Document) - Method in class ome.xml.model.Rectangle
asXMLElement(Document, Element) - Method in class ome.xml.model.Rectangle
asXMLElement(Document) - Method in class ome.xml.model.Reference
asXMLElement(Document, Element) - Method in class ome.xml.model.Reference
asXMLElement(Document) - Method in class ome.xml.model.Rights
asXMLElement(Document, Element) - Method in class ome.xml.model.Rights
asXMLElement(Document) - Method in class ome.xml.model.ROI
asXMLElement(Document, Element) - Method in class ome.xml.model.ROI
asXMLElement(Document) - Method in class ome.xml.model.ROIRef
asXMLElement(Document, Element) - Method in class ome.xml.model.ROIRef
asXMLElement(Document) - Method in class ome.xml.model.Screen
asXMLElement(Document, Element) - Method in class ome.xml.model.Screen
asXMLElement(Document) - Method in class ome.xml.model.Settings
asXMLElement(Document, Element) - Method in class ome.xml.model.Settings
asXMLElement(Document, Element) - Method in class ome.xml.model.Shape
asXMLElement(Document) - Method in class ome.xml.model.StageLabel
asXMLElement(Document, Element) - Method in class ome.xml.model.StageLabel
asXMLElement(Document) - Method in class ome.xml.model.StructuredAnnotations
asXMLElement(Document, Element) - Method in class ome.xml.model.StructuredAnnotations
asXMLElement(Document) - Method in class ome.xml.model.TagAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.TagAnnotation
asXMLElement(Document) - Method in class ome.xml.model.TermAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.TermAnnotation
asXMLElement(Document) - Method in class ome.xml.model.TextAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.TextAnnotation
asXMLElement(Document) - Method in class ome.xml.model.TiffData
asXMLElement(Document, Element) - Method in class ome.xml.model.TiffData
asXMLElement(Document) - Method in class ome.xml.model.TimestampAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.TimestampAnnotation
asXMLElement(Document) - Method in class ome.xml.model.TransmittanceRange
asXMLElement(Document, Element) - Method in class ome.xml.model.TransmittanceRange
asXMLElement(Document) - Method in class ome.xml.model.TypeAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.TypeAnnotation
asXMLElement(Document) - Method in class ome.xml.model.Union
asXMLElement(Document, Element) - Method in class ome.xml.model.Union
asXMLElement(Document) - Method in class ome.xml.model.UUID
asXMLElement(Document, Element) - Method in class ome.xml.model.UUID
asXMLElement(Document) - Method in class ome.xml.model.Well
asXMLElement(Document, Element) - Method in class ome.xml.model.Well
asXMLElement(Document) - Method in class ome.xml.model.WellSample
asXMLElement(Document, Element) - Method in class ome.xml.model.WellSample
asXMLElement(Document) - Method in class ome.xml.model.WellSampleRef
asXMLElement(Document, Element) - Method in class ome.xml.model.WellSampleRef
asXMLElement(Document) - Method in class ome.xml.model.XMLAnnotation
asXMLElement(Document, Element) - Method in class ome.xml.model.XMLAnnotation
ATTR_NAME - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
attrInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
AttrPtg - Class in loci.poi.hssf.record.formula: "Special Attributes" This seems to be a Misc Stuff and Junk record.
AttrPtg() - Constructor for class loci.poi.hssf.record.formula.AttrPtg
AttrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AttrPtg
authenticationCodes - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
AUTOMATIC - Static variable in class loci.poi.hssf.record.CalcModeRecord: automatically calculate formulas (1)
AUTOMATIC_EXCEPT_TABLES - Static variable in class loci.poi.hssf.record.CalcModeRecord: automatically calculate formulas except for tables (-1)
autoscale(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools: Perform autoscaling on the given BufferedImage.
autoscale(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools: Perform autoscaling on the given BufferedImage; map min to 0 and max to 255.
autoscale(byte[], int, int, int, boolean) - Static method in class loci.formats.ImageTools: Perform autoscaling on the given byte array; map min to 0 and max to 255.
autoscaleBox - Variable in class loci.plugins.in.MainDialog
autoSizeColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet: Adjusts the column width to fit the contents.
autoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
autoUpdate - Variable in class loci.formats.cache.Cache: Whether the cache should automatically update when a parameter changes.
available() - Method in class loci.common.NIOInputStream
available() - Method in class loci.common.RandomAccessInputStream
available() - Method in class loci.poi.poifs.filesystem.DocumentInputStream: Returns the number of bytes that can be read (or skipped over) from this input stream without blocking by the next caller of a method for this input stream.
available() - Method in class loci.poi.util.BlockingInputStream
AVI_MAGIC_STRING - Static variable in class loci.formats.in.AVIReader
AVIReader - Class in loci.formats.in: AVIReader is the file format reader for AVI files.
AVIReader() - Constructor for class loci.formats.in.AVIReader: Constructs a new AVI reader.
AVIWriter - Class in loci.formats.out: AVIWriter is the file format writer for AVI files.
AVIWriter() - Constructor for class loci.formats.out.AVIWriter
avoidUndeclaredNamespaces(String) - Static method in class loci.common.xml.XMLTools: Replaces NS:tag with NS_tag for undeclared namespaces
AWTImageTools - Class in loci.formats.gui: A utility class with convenience methods for manipulating images in BufferedImage form.
ax - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: The horizontal coordinate of the image origin in the canvas system, on the reference grid.
AXIS_TYPE_AXIS_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
AXIS_TYPE_CATEGORY_OR_X_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
AXIS_TYPE_MAIN - Static variable in class loci.poi.hssf.record.AxisParentRecord
AXIS_TYPE_MAJOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
AXIS_TYPE_MINOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
AXIS_TYPE_SECONDARY - Static variable in class loci.poi.hssf.record.AxisParentRecord
AXIS_TYPE_SERIES_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
AXIS_TYPE_VALUE_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
AXIS_TYPE_WALLS_OR_FLOOR - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
AxisGuesser - Class in loci.formats: AxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T or C), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess.
AxisGuesser(FilePattern, String, int, int, int, boolean) - Constructor for class loci.formats.AxisGuesser: Guesses dimensional axis assignments corresponding to the given file pattern, using the specified dimensional information from within each file as a guide.
AxisLineFormatRecord - Class in loci.poi.hssf.record: The axis line format record defines the axis type details.
AxisLineFormatRecord() - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord
AxisLineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord: Constructs a AxisLineFormat record and sets its fields appropriately.
AxisOptionsRecord - Class in loci.poi.hssf.record: The axis options record provides unit information and other various tidbits about the axis.
AxisOptionsRecord() - Constructor for class loci.poi.hssf.record.AxisOptionsRecord
AxisOptionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisOptionsRecord: Constructs a AxisOptions record and sets its fields appropriately.
AxisParentRecord - Class in loci.poi.hssf.record: The axis size and location NOTE: This source is automatically generated please do not modify this file.
AxisParentRecord() - Constructor for class loci.poi.hssf.record.AxisParentRecord
AxisParentRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisParentRecord: Constructs a AxisParent record and sets its fields appropriately.
AxisRecord - Class in loci.poi.hssf.record: The axis record defines the type of an axis.
AxisRecord() - Constructor for class loci.poi.hssf.record.AxisRecord
AxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisRecord: Constructs a Axis record and sets its fields appropriately.
axisTypes - Variable in class loci.formats.AxisGuesser: Guessed axis types.
AxisUsedRecord - Class in loci.poi.hssf.record: The number of axes used on a chart.
AxisUsedRecord() - Constructor for class loci.poi.hssf.record.AxisUsedRecord
AxisUsedRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisUsedRecord: Constructs a AxisUsed record and sets its fields appropriately.
ay - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: The vertical coordinate of the image origin in the canvas system, on the reference grid.

B

ba - Variable in class mdbtools.libmdb.Holder
backend - Class in mdbtools.libmdb
backend() - Constructor for class mdbtools.libmdb.backend
backend_name - Variable in class mdbtools.libmdb.MdbFile
backend_name - Variable in class mdbtools.libmdb.MdbHandle
BACKGROUND_TABLE - Static variable in class loci.formats.in.LiFlimReader
backgroundColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
BackupRecord - Class in loci.poi.hssf.record: Title: Backup Record
BackupRecord() - Constructor for class loci.poi.hssf.record.BackupRecord
BackupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BackupRecord: Constructs a BackupRecord and sets its fields appropriately
BACKWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
baos - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder: The ByteArrayOutputStream to store header data.
BarRecord - Class in loci.poi.hssf.record: The bar record is used to define a bar chart.
BarRecord() - Constructor for class loci.poi.hssf.record.BarRecord
BarRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BarRecord: Constructs a Bar record and sets its fields appropriately.
Base64Codec - Class in loci.formats.codec: Implements encoding (compress) and decoding (decompress) methods for Base64.
Base64Codec() - Constructor for class loci.formats.codec.Base64Codec
BaseCodec - Class in loci.formats.codec: BaseCodec contains default implementation and testing for classes implementing the Codec interface, and acts as a base class for any of the compression classes.
BaseCodec() - Constructor for class loci.formats.codec.BaseCodec
BaseHandler - Class in loci.common.xml: Top-level SAX handler.
BaseHandler() - Constructor for class loci.common.xml.BaseHandler
BaselineTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff: A class representing the set of tags found in the baseline TIFF specification as well as some common additional tags.
BaseMetadata - Interface in loci.formats.meta: Source code: Trac, Gitweb
BaseMetadata - Interface in ome.xml.meta: A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.
basename - Variable in class loci.formats.in.ZeissTIFFHandler.Plane
BaseTiffReader - Class in loci.formats.in: BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
BaseTiffReader(String, String) - Constructor for class loci.formats.in.BaseTiffReader: Constructs a new BaseTiffReader.
BaseTiffReader(String, String[]) - Constructor for class loci.formats.in.BaseTiffReader: Constructs a new BaseTiffReader.
BaseZeissReader - Class in loci.formats.in: BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.
BaseZeissReader(String, String) - Constructor for class loci.formats.in.BaseZeissReader: Constructs a new ZeissZVI reader.
BaseZeissReader(String, String[]) - Constructor for class loci.formats.in.BaseZeissReader: Constructs a new ZeissZVI reader.
BaseZeissReader.Context - Enum in loci.formats.in
BaseZeissReader.Tag - Class in loci.formats.in: Content of a single tag from a Tags block.
BaseZeissReader.Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag: Constructor.
BaseZeissReader.Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag: Constructor.
BasicAnnotation - Class in ome.xml.model
BasicAnnotation() - Constructor for class ome.xml.model.BasicAnnotation: Default constructor.
BasicAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BasicAnnotation: Constructs BasicAnnotation recursively from an XML DOM tree.
BasicAnnotation(BasicAnnotation) - Constructor for class ome.xml.model.BasicAnnotation: Copy constructor.
BATBlock - Class in loci.poi.poifs.storage: A block of block allocation table entries.
BATManaged - Interface in loci.poi.poifs.filesystem: This interface defines behaviors for objects managed by the Block Allocation Table (BAT).
BDReader - Class in loci.formats.in: BDReader is the file format reader for BD Pathway datasets.
BDReader() - Constructor for class loci.formats.in.BDReader: Constructs a new ScanR reader.
BEBufferedRandomAccessFile - Class in jj2000.j2k.io: This class defines a Buffered Random Access File, where all I/O is considered to be big-endian, and extends the BufferedRandomAccessFile class.
BEBufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile: Constructor.
BEBufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile: Constructor.
BEBufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile: Constructor.
BEBufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile: Constructor.
beforeRecordSerialize(int, short, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener: Fired before a given escher record is serialized.
beforeRecordSerialize(int, short, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
beginDecoding() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: This routine is called prior to a sequence of calls to the decode method, in order to allow any necessary tables or other structures to be initialized based on metadata values.
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor: Invokes the superclass method and then sets instance variables on the basis of the metadata set on this decompressor.
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
BeginRecord - Class in loci.poi.hssf.record: The begin record defines the start of a block of records for a (grpahing data object.
BeginRecord() - Constructor for class loci.poi.hssf.record.BeginRecord
BeginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BeginRecord: Constructs a BeginRecord record and sets its fields appropriately.
BETA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7: The value of the second lifting step coefficient
BETA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7: The value of the second lifting step coefficient
BF - Class in loci.plugins: Miscellaneous plugins utility methods.
BFVirtualStack - Class in loci.plugins.util: Subclass of VirtualStack that uses Bio-Formats to read planes on demand.
BFVirtualStack(String, IFormatReader, boolean, boolean, boolean) - Constructor for class loci.plugins.util.BFVirtualStack
bgrToRgb(byte[], boolean, int, int) - Static method in class loci.formats.ImageTools
BH_HEADER_CHKSUM - Static variable in class loci.formats.in.SDTInfo
BH_HEADER_NOT_VALID - Static variable in class loci.formats.in.SDTInfo
BH_HEADER_VALID - Static variable in class loci.formats.in.SDTInfo
BI_BITFIELDS - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
BI_JPEG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
BI_PNG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
BI_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
BI_RLE4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
BI_RLE8 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
BiffViewer - Class in loci.poi.hssf.dev: Utillity for reading in BIFF8 records and displaying data from them.
BiffViewer(String[]) - Constructor for class loci.poi.hssf.dev.BiffViewer: Creates new BiffViewer
BIFormatReader - Class in loci.formats.in: BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.
BIFormatReader(String, String) - Constructor for class loci.formats.in.BIFormatReader: Constructs a new BIFormatReader.
BIFormatReader(String, String[]) - Constructor for class loci.formats.in.BIFormatReader: Constructs a new BIFormatReader.
BIG - Static variable in class loci.formats.tiff.TiffConstants
BIG_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType: Identifier for big-endian byte ordering (i.e.
BIG_SPOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
BIG_SPOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: Large spots
BIG_TIFF - Static variable in class loci.formats.tiff.IFD
BIG_TIFF_BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants: The number of bytes in each IFD entry of a BigTIFF file.
BIG_TIFF_MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants
BinaryDataInput - Interface in jj2000.j2k.io: This interface defines the input of binary data from streams and/or files.
BinaryDataOutput - Interface in jj2000.j2k.io: This interface defines the output of binary data to streams and/or files.
BinaryFile - Class in ome.xml.model
BinaryFile() - Constructor for class ome.xml.model.BinaryFile: Default constructor.
BinaryFile(Element, OMEModel) - Constructor for class ome.xml.model.BinaryFile: Constructs BinaryFile recursively from an XML DOM tree.
BinaryFile(BinaryFile) - Constructor for class ome.xml.model.BinaryFile: Copy constructor.
BinaryOnly - Class in ome.xml.model
BinaryOnly() - Constructor for class ome.xml.model.BinaryOnly: Default constructor.
BinaryOnly(Element, OMEModel) - Constructor for class ome.xml.model.BinaryOnly: Constructs BinaryOnly recursively from an XML DOM tree.
BinaryOnly(BinaryOnly) - Constructor for class ome.xml.model.BinaryOnly: Copy constructor.
BinaryTree - Class in loci.poi.util: Red-Black tree-based implementation of Map.
BinaryTree() - Constructor for class loci.poi.util.BinaryTree: Construct a new BinaryTree
BinaryTree(Map) - Constructor for class loci.poi.util.BinaryTree: Constructs a new BinaryTree from an existing Map, with keys and values sorted
bind_ptr - Variable in class mdbtools.libmdb.MdbColumn
BinData - Class in ome.xml.model
BinData() - Constructor for class ome.xml.model.BinData: Default constructor.
BinData(Element, OMEModel) - Constructor for class ome.xml.model.BinData: Constructs BinData recursively from an XML DOM tree.
BinData(BinData) - Constructor for class ome.xml.model.BinData: Copy constructor.
Binning - Enum in ome.xml.model.enums
BinningEnumHandler - Class in ome.xml.model.enums.handlers: Enumeration handler for Binning.
BinningEnumHandler() - Constructor for class ome.xml.model.enums.handlers.BinningEnumHandler
BioFormatsExtensionPrinter - Class in loci.formats.tools: This class is used to generate a text file containing all of the image file extensions supported by Bio-Formats.
BioFormatsExtensionPrinter() - Constructor for class loci.formats.tools.BioFormatsExtensionPrinter
BioRadGelReader - Class in loci.formats.in: BioRadGelReader is the file format reader for Bio-Rad gel files.
BioRadGelReader() - Constructor for class loci.formats.in.BioRadGelReader: Constructs a new Bio-Rad gel reader.
BioRadReader - Class in loci.formats.in: BioRadReader is the file format reader for Bio-Rad PIC files.
BioRadReader() - Constructor for class loci.formats.in.BioRadReader: Constructs a new BioRadReader.
BioRadSCNReader - Class in loci.formats.in: BioRadSCNReader is the reader for Bio-Rad .scn files Source code: Trac, Gitweb
BioRadSCNReader() - Constructor for class loci.formats.in.BioRadSCNReader: Constructs a new Bio-Rad .scn reader.
BitBuffer - Class in loci.formats.codec: A class for reading arbitrary numbers of bits from a byte array.
BitBuffer(byte[]) - Constructor for class loci.formats.codec.BitBuffer: Default constructor.
BitField - Class in loci.poi.util: Manage operations dealing with bit-mapped fields.
BitField(int) - Constructor for class loci.poi.util.BitField: Create a BitField instance
BitFieldFactory - Class in loci.poi.util: Returns immutable Btfield instances.
BitFieldFactory() - Constructor for class loci.poi.util.BitFieldFactory
BitFile - Class in com.sun.media.imageioimpl.common: Came from GIFEncoder initially.
BitFile(ImageOutputStream, boolean) - Constructor for class com.sun.media.imageioimpl.common.BitFile
BitOutputBuffer - Class in jj2000.j2k.codestream.writer: This class implements a buffer for writing bits, with the required bit stuffing policy for the packet headers.
BitOutputBuffer() - Constructor for class jj2000.j2k.codestream.writer.BitOutputBuffer: Creates a new BitOutputBuffer width a buffer of length 'SZ_INIT'.
bits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor: Output bit buffer.
BITS_PER_COMPONENT_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
BITS_PER_SAMPLE - Static variable in class loci.formats.tiff.IFD
BitsPerComponentBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000: This class is defined to represent a Bits Per Component Box of JPEG JP2 file format.
BitsPerComponentBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox: Counstructs a BitsPerComponentBox from the provided byte array containing the bit depths of each color component.
BitsPerComponentBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox: Constructs a BitsPerComponentBox based on the provide org.w3c.dom.Node.
bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
bitsPerPixel - Variable in class loci.formats.CoreMetadata: Number of valid bits per pixel.
bitsPerSample - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The value of the BitsPerSample tag.
bitsPerSample - Variable in class loci.formats.codec.CodecOptions: Number of bits per channel.
BitstreamReaderAgent - Class in jj2000.j2k.codestream.reader: This is the generic interface for bit stream reader agents.
BitstreamReaderAgent(HeaderDecoder, DecoderSpecs) - Constructor for class jj2000.j2k.codestream.reader.BitstreamReaderAgent: Initializes members of this class.
BitWriter - Class in loci.formats.codec: A class for writing arbitrary numbers of bits to a byte array.
BitWriter() - Constructor for class loci.formats.codec.BitWriter: Constructs a new bit writer.
BitWriter(int) - Constructor for class loci.formats.codec.BitWriter: Constructs a new bit writer with the given initial buffer size.
BLACK - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor: The CCITT numerical definition of black.
blankImage(int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools: Creates a blank image with the given dimensions and transfer type.
BlankRecord - Class in loci.poi.hssf.record: Title: Blank cell record
BlankRecord() - Constructor for class loci.poi.hssf.record.BlankRecord: Creates a new instance of BlankRecord
BlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BlankRecord: Constructs a BlankRecord and sets its fields appropriately
BLIP__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
BLIP__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
BLIP__BLIPTODISPLAY - Static variable in class loci.poi.ddf.EscherProperties
BLIP__BRIGHTNESSSETTING - Static variable in class loci.poi.ddf.EscherProperties
BLIP__CONTRASTSETTING - Static variable in class loci.poi.ddf.EscherProperties
BLIP__CROPFROMBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
BLIP__CROPFROMLEFT - Static variable in class loci.poi.ddf.EscherProperties
BLIP__CROPFROMRIGHT - Static variable in class loci.poi.ddf.EscherProperties
BLIP__CROPFROMTOP - Static variable in class loci.poi.ddf.EscherProperties
BLIP__DOUBLEMOD - Static variable in class loci.poi.ddf.EscherProperties
BLIP__GAMMA - Static variable in class loci.poi.ddf.EscherProperties
BLIP__NOHITTESTPICTURE - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PICTUREACTIVE - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PICTUREBILEVEL - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PICTUREFILLMOD - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PICTUREGRAY - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PICTUREID - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PICTURELINE - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PRINTBLIP - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PRINTBLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
BLIP__PRINTFLAGS - Static variable in class loci.poi.ddf.EscherProperties
BLIP__TRANSPARENTCOLOR - Static variable in class loci.poi.ddf.EscherProperties
BlkImgDataSrc - Interface in jj2000.j2k.image: This interface defines the methods to transfer image data in blocks, without following any particular order (random access).
BLOCK_END - Static variable in class loci.formats.FilePatternBlock
BLOCK_SIZE - Static variable in class loci.poi.hssf.record.DBCellRecord
BLOCK_START - Static variable in class loci.formats.FilePatternBlock
BlockAllocationTableReader - Class in loci.poi.poifs.storage: This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.
BlockAllocationTableReader(int, int[], int, int, BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader: create a BlockAllocationTableReader for an existing filesystem.
BlockAllocationTableWriter - Class in loci.poi.poifs.storage: This class manages and creates the Block Allocation Table, which is basically a set of linked lists of block indices.
BlockAllocationTableWriter() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableWriter: create a BlockAllocationTableWriter
BlockingInputStream - Class in loci.poi.util: Implementation of a BlockingInputStream to provide data to RawDataBlock that expects data in 512 byte chunks.
BlockingInputStream(InputStream) - Constructor for class loci.poi.util.BlockingInputStream
blockLength - Variable in class loci.formats.in.SDTInfo: reserved2 now contains block (set) length.
BlockList - Interface in loci.poi.poifs.storage: Interface for lists of blocks that are mapped by block allocation tables
blockNo - Variable in class loci.formats.in.SDTInfo: Number of the block in the file.
blockType - Variable in class loci.formats.in.SDTInfo: See blockType defines below.
BlockWritable - Interface in loci.poi.poifs.storage: An interface for persisting block storage of POIFS components.
blue - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
blue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
blueX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
blueY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
blueZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
BMP_MAGIC_STRING - Static variable in class loci.formats.in.BMPReader
BMPConstants - Interface in com.sun.media.imageioimpl.plugins.bmp
BMPImageReader - Class in com.sun.media.imageioimpl.plugins.bmp: This class is the Java Image IO plugin reader for BMP images.
BMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader: Constructs BMPImageReader from the provided ImageReaderSpi.
BMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.bmp
BMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
BMPImageWriteParam - Class in com.sun.media.imageio.plugins.bmp: A subclass of ImageWriteParam for encoding images in the BMP format.
BMPImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam: Constructs a BMPImageWriteParam set to use a given Locale and with default values for all parameters.
BMPImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam: Constructs an BMPImageWriteParam object with default values for all parameters and a null Locale.
BMPImageWriter - Class in com.sun.media.imageioimpl.plugins.bmp: The Java Image IO plugin writer for encoding a binary RenderedImage into a BMP format.
BMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter: Constructs BMPImageWriter based on the provided ImageWriterSpi.
BMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.bmp
BMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
BMPMetadata - Class in com.sun.media.imageioimpl.plugins.bmp
BMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
BMPMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
BMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.bmp
BMPMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.bmp
BMPMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources
BMPReader - Class in loci.formats.in: BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
BMPReader() - Constructor for class loci.formats.in.BMPReader: Constructs a new BMP reader.
bmpVersion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
bms - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder: By-pass mode specifications
BOFRecord - Class in loci.poi.hssf.record: Title: Beginning Of File
BOFRecord() - Constructor for class loci.poi.hssf.record.BOFRecord: Constructs an empty BOFRecord with no fields set.
BOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BOFRecord: Constructs a BOFRecord and sets its fields appropriately
BogusColorSpace - Class in com.sun.media.imageioimpl.common: A dummy ColorSpace to enable ColorModel for image data which do not have an innate color representation.
BogusColorSpace(int) - Constructor for class com.sun.media.imageioimpl.common.BogusColorSpace: Constructs a bogus ColorSpace.
BOLDWEIGHT_BOLD - Static variable in class loci.poi.hssf.usermodel.HSSFFont: Bold boldness (bold)
BOLDWEIGHT_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont: Normal boldness (not bold)
book - Variable in class loci.poi.hssf.usermodel.HSSFSheet
BookBoolRecord - Class in loci.poi.hssf.record: Title: Save External Links record (BookBool)
BookBoolRecord() - Constructor for class loci.poi.hssf.record.BookBoolRecord
BookBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BookBoolRecord: Constructs a BookBoolRecord and sets its fields appropriately
BooleanAnnotation - Class in ome.xml.model
BooleanAnnotation() - Constructor for class ome.xml.model.BooleanAnnotation: Default constructor.
BooleanAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BooleanAnnotation: Constructs BooleanAnnotation recursively from an XML DOM tree.
BooleanAnnotation(BooleanAnnotation) - Constructor for class ome.xml.model.BooleanAnnotation: Copy constructor.
BooleanOption - Class in loci.plugins.prefs: A boolean option for one of the plugins.
BooleanOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.BooleanOption: Constructs a boolean option with the parameters from the given map.
BooleanOption(String, boolean, String, String, boolean) - Constructor for class loci.plugins.prefs.BooleanOption: Constructs a boolean option with the given parameters.
BoolErrRecord - Class in loci.poi.hssf.record: Creates new BoolErrRecord.
BoolErrRecord() - Constructor for class loci.poi.hssf.record.BoolErrRecord: Creates new BoolErrRecord
BoolErrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoolErrRecord: Constructs a BoolErr record and sets its fields appropriately.
BoolPtg - Class in loci.poi.hssf.record.formula: Boolean (boolean) Stores a (java) boolean value in a formula.
BoolPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
BoolPtg(String) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
BORDER - Static variable in class loci.plugins.shortcut.ShortcutPanel: Number of pixels for window border.
BORDER_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: dash-dot border
BORDER_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: dash-dot-dot border
BORDER_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: dash border
BORDER_DOTTED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: hair-line border
BORDER_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: double-line border
BORDER_HAIR - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: dot border
BORDER_MEDIUM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: Medium border
BORDER_MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: medium dash-dot border
BORDER_MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: medium dash-dot-dot border
BORDER_MEDIUM_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: Medium dashed border
BORDER_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: No border
BORDER_SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: slanted dash-dot border
BORDER_THICK - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: Thick border
BORDER_THIN - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: Thin border
BORDER_TYPE_REGULAR - Static variable in class loci.poi.hssf.record.FrameRecord
BORDER_TYPE_SHADOW - Static variable in class loci.poi.hssf.record.FrameRecord
bordL - Variable in class loci.formats.in.SDTInfo
bordU - Variable in class loci.formats.in.SDTInfo
BottomMargin - Static variable in class loci.poi.hssf.model.Sheet
BottomMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet
BottomMarginRecord - Class in loci.poi.hssf.record: Record for the bottom margin.
BottomMarginRecord() - Constructor for class loci.poi.hssf.record.BottomMarginRecord
BottomMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BottomMarginRecord: Constructs a BottomMargin record and sets its fields appropriately.
BoundSheetRecord - Class in loci.poi.hssf.record: Title: Bound Sheet Record (aka BundleSheet)
BoundSheetRecord() - Constructor for class loci.poi.hssf.record.BoundSheetRecord
BoundSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoundSheetRecord: Constructs a BoundSheetRecord and sets its fields appropriately
boundsheets - Variable in class loci.poi.hssf.model.Workbook: holds the "boundsheet" records (aka bundlesheet) so that they can have their reference to their "BOF" marker
Box - Class in com.sun.media.imageioimpl.plugins.jpeg2000: This class is defined to create the box of JP2 file format.
Box(int, int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box: Constructs a Box instance using the provided the box type and the box content in byte array format.
Box(int, int, long, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box: Constructs a Box instance using the provided the box type, the box extra length, and the box content in byte array format.
Box(ImageInputStream, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box: Constructs a Box instance from the provided ImageInputStream at the specified position.
Box(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box: Constructs a Box from an "unknown" Node.
BOX_SIZE - Static variable in class loci.formats.in.FakeReader
bpp - Variable in class loci.formats.in.BaseZeissReader: Number of bytes per pixel.
BRICKS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
BRICKS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle: Brick-like layout
BRIGHTNESS_VALUE - Static variable in class loci.formats.tiff.IFD
BrowserOptionsWindow - Class in loci.plugins.util: Extension of JFrame that allows the user to adjust caching settings.
BrowserOptionsWindow(String, Cache, String[]) - Constructor for class loci.plugins.util.BrowserOptionsWindow
BrukerReader - Class in loci.formats.in: BrukerReader is the file format reader for Bruker MRI files.
BrukerReader() - Constructor for class loci.formats.in.BrukerReader: Constructs a new Bruker reader.
BSTORE_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
BT_DIB - Static variable in class loci.poi.ddf.EscherBSERecord
BT_EMF - Static variable in class loci.poi.ddf.EscherBSERecord
BT_ERROR - Static variable in class loci.poi.ddf.EscherBSERecord
BT_JPEG - Static variable in class loci.poi.ddf.EscherBSERecord
BT_PICT - Static variable in class loci.poi.ddf.EscherBSERecord
BT_PNG - Static variable in class loci.poi.ddf.EscherBSERecord
BT_UNKNOWN - Static variable in class loci.poi.ddf.EscherBSERecord
BT_WMF - Static variable in class loci.poi.ddf.EscherBSERecord
BUBBLE_SERIES_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
BUBBLE_SERIES_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
BUBBLE_SERIES_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
BUBBLE_SERIES_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
BUF_DEF_LEN - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer: The default initial buffer size
BUF_INC - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer: The buffer increase size
buffer - Variable in class loci.common.ByteArrayHandle: Backing ByteBuffer.
buffer - Variable in class loci.common.NIOFileHandle: The buffer itself.
BufferedImageReader - Class in loci.formats.gui: A reader wrapper for reading image planes as BufferedImage objects.
BufferedImageReader() - Constructor for class loci.formats.gui.BufferedImageReader: Constructs a BufferedImageReader around a new image reader.
BufferedImageReader(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageReader: Constructs a BufferedImageReader with the given reader.
BufferedImageSource - Class in loci.formats.gui: Retrieves BufferedImages from a data source using Bio-Formats.
BufferedImageSource(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageSource
BufferedImageWriter - Class in loci.formats.gui: A writer wrapper for writing image planes from BufferedImage objects.
BufferedImageWriter() - Constructor for class loci.formats.gui.BufferedImageWriter: Constructs a BufferedImageWriter around a new image writer.
BufferedImageWriter(IFormatWriter) - Constructor for class loci.formats.gui.BufferedImageWriter: Constructs a BufferedImageWriter with the given writer.
BufferedRandomAccessFile - Class in jj2000.j2k.io: This class defines a Buffered Random Access File.
BufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile: Constructor.
BufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile: Constructor.
BufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile: Constructor.
BufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile: Constructor.
bufferSize - Variable in class loci.common.NIOFileHandle: The buffer size.
bufferStartPosition - Variable in class loci.common.NIOFileHandle: The absolute position of the start of the buffer.
bugaddr - Static variable in class jj2000.j2k.JJ2KInfo: The bug reporting e-mail address
BUILD - Static variable in class loci.poi.hssf.record.BOFRecord: suggested default 0x10d3
BUILD_YEAR - Static variable in class loci.poi.hssf.record.BOFRecord: suggested default 0x07CC (1996)
buildExtensions() - Method in class loci.plugins.macro.MacroFunctions: Builds the list of extensions, using reflection, from public methods of this class.
buildFileChooser(IFormatHandler) - Static method in class loci.formats.gui.GUITools: Constructs a file chooser for the given file format handler.
buildFileChooser(IFormatHandler, boolean) - Static method in class loci.formats.gui.GUITools: Constructs a file chooser for the given file format handler.
buildFileChooser(FileFilter[]) - Static method in class loci.formats.gui.GUITools: Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter.
buildFileChooser(FileFilter[], boolean) - Static method in class loci.formats.gui.GUITools: Builds a file chooser with the given file filters, as well as an "All supported file types" combo filter, if one is not already specified.
buildFileFilters(IFormatHandler) - Static method in class loci.formats.gui.GUITools: Constructs a list of file filters for the given file format handler.
buildFontCharactersProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
buildFontHeightProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
buildFontWidthsProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
buildFunction(Function, Object) - Method in class mdbtools.dbengine.Tests
buildFunction(Aggregate, Object) - Method in class mdbtools.dbengine.Tests
buildPalette() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
BUILTIN_AUTO_ACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_AUTO_CLOSE - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_AUTO_DEACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_AUTO_OPEN - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_CONSOLIDATE_AREA - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_CRITERIA - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_DATA_FORM - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_DATABASE - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_PRINT_AREA - Static variable in class loci.poi.hssf.record.NameRecord
BUILTIN_PRINT_TITLE - Static variable in class loci.poi.hssf.record.NameRecord
BUILTIN_RECORDER - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BUILTIN_SHEET_TITLE - Static variable in class loci.poi.hssf.record.NameRecord: Included for completeness sake, not implemented
BurleighReader - Class in loci.formats.in: BurleighReader is the file format reader for Burleigh .img files.
BurleighReader() - Constructor for class loci.formats.in.BurleighReader: Constructs a new Burleigh reader.
BYTE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
ByteArrayHandle - Class in loci.common: A wrapper for a byte array that implements the IRandomAccess interface.
ByteArrayHandle(byte[]) - Constructor for class loci.common.ByteArrayHandle: Creates a random access byte stream to read from, and write to, the bytes specified by the byte[] argument.
ByteArrayHandle(ByteBuffer) - Constructor for class loci.common.ByteArrayHandle
ByteArrayHandle(int) - Constructor for class loci.common.ByteArrayHandle: Creates a random access byte stream to read from, and write to.
ByteArrayHandle() - Constructor for class loci.common.ByteArrayHandle: Creates a random access byte stream to write to a byte array.
byteArraySet(byte[], byte) - Static method in class jj2000.j2k.util.ArrayUtil: Reinitializes a byte array to the given value in an optimized way.
ByteArraySource - Class in loci.formats.cache: Retrieves byte arrays from a data source (e.g., a file) using Bio-Formats.
ByteArraySource(IFormatReader) - Constructor for class loci.formats.cache.ByteArraySource: Constructs a byte array source from the given Bio-Formats reader.
ByteArraySource(String) - Constructor for class loci.formats.cache.ByteArraySource: Constructs a byte array source that draws from the given file.
byteBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile: Buffer of bytes containing the part of the file that is currently being accessed
byteBufferChanged - Variable in class jj2000.j2k.io.BufferedRandomAccessFile: Boolean keeping track of whether the byte buffer has been changed since it was read.
byteBufferProvider - Variable in class loci.common.NIOFileHandle: Provider class for NIO byte buffers, allocated or memory mapped.
byteCount - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The number of bytes of data from the source ImageInputStream to be decompressed.
ByteField - Class in loci.poi.util: representation of a byte (8-bit) field at a fixed location within a byte array
ByteField(int) - Constructor for class loci.poi.util.ByteField: construct the ByteField with its offset into its containing byte array and a default value of 0
ByteField(int, byte) - Constructor for class loci.poi.util.ByteField: construct the ByteField with its offset into its containing byte array and initialize its value
ByteField(int, byte[]) - Constructor for class loci.poi.util.ByteField: Construct the ByteField with its offset into its containing byte array and initialize its value from its byte array
ByteField(int, byte, byte[]) - Constructor for class loci.poi.util.ByteField: construct the ByteField with its offset into its containing byte array, initialize its value, and write its value to its byte array
ByteInputBuffer - Class in jj2000.j2k.entropy.decoder: This class provides a byte input facility from byte buffers.
ByteInputBuffer(byte[]) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer: Creates a new byte array input stream that reads data from the specified byte array.
ByteInputBuffer(byte[], int, int) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer: Creates a new byte array input stream that reads data from the specified byte array.
byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
byteOrder - Variable in class loci.poi.hpsf.PropertySet: Specifies this PropertySet's byte order.
byteOrdering - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
ByteOutputBuffer - Class in jj2000.j2k.entropy.encoder: This class provides a buffering output stream similar to ByteArrayOutputStream, with some additional methods.
ByteOutputBuffer() - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer: Creates a new byte array output stream.
ByteOutputBuffer(int) - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer: Creates a new byte array output stream, with a buffer capacity of the specified size, in bytes.
bytes - Variable in class loci.formats.tiff.TiffSaver: Output bytes.
bytes - Variable in class loci.poi.hpsf.ClassID: The bytes making out the class ID in correct order, i.e.
BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants: The number of bytes in each IFD entry.
bytesToDouble(byte[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to a double.
bytesToDouble(byte[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
bytesToDouble(byte[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array to a double.
bytesToDouble(short[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to a double.
bytesToDouble(short[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
bytesToDouble(short[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array to a double.
bytesToFloat(byte[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to a float.
bytesToFloat(byte[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
bytesToFloat(byte[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array to a float.
bytesToFloat(short[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond a given offset to a float.
bytesToFloat(short[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
bytesToFloat(short[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array to a float.
bytesToHex(byte[]) - Static method in class loci.common.DataTools: Translates the given byte array into a String of hexadecimal digits.
bytesToInt(byte[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to an int.
bytesToInt(byte[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
bytesToInt(byte[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array to an int.
bytesToInt(short[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to an int.
bytesToInt(short[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
bytesToInt(short[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 4 bytes of a byte array to an int.
bytesToLong(byte[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to a long.
bytesToLong(byte[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
bytesToLong(byte[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array to a long.
bytesToLong(short[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to a long.
bytesToLong(short[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
bytesToLong(short[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 8 bytes of a byte array to a long.
bytesToShort(byte[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array beyond the given offset to a short.
bytesToShort(byte[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 2 bytes of a byte array beyond the given offset to a short.
bytesToShort(byte[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 2 bytes of a byte array to a short.
bytesToShort(short[], int, int, boolean) - Static method in class loci.common.DataTools: Translates up to the first len bytes of a byte array byond the given offset to a short.
bytesToShort(short[], int, boolean) - Static method in class loci.common.DataTools: Translates up to the first 2 bytes of a byte array byond the given offset to a short.
bytesToShort(short[], boolean) - Static method in class loci.common.DataTools: Translates up to the first 2 bytes of a byte array to a short.
byteTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
byteValue() - Method in class loci.formats.tiff.TiffRational: Returns the value of the specified number as a byte.
ByteVector - Class in loci.formats.codec: A growable array of bytes.
ByteVector() - Constructor for class loci.formats.codec.ByteVector
ByteVector(int) - Constructor for class loci.formats.codec.ByteVector
ByteVector(byte[]) - Constructor for class loci.formats.codec.ByteVector
BZip2Handle - Class in loci.common: StreamHandle implementation for reading from BZip2-compressed files or byte arrays.
BZip2Handle(String) - Constructor for class loci.common.BZip2Handle: Construct a new BZip2Handle corresponding to the given file.

C

C - Static variable in class loci.formats.AxisGuesser: Prefix endings indicating channel dimension.
c - Variable in class loci.formats.tools.AmiraParameters
C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader
C_AXIS - Static variable in class loci.formats.AxisGuesser: Axis type for channels.
C_KEY - Static variable in class loci.formats.in.LiFlimReader
C_STRING - Static variable in class loci.formats.in.SDTInfo
Cache - Class in loci.formats.cache: Cache provides a means of managing subsets of large collections of image planes in memory.
Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache: Constructs an object cache with the given cache strategy and source.
cache - Variable in class loci.formats.cache.Cache: Master array containing cached objects.
cache - Variable in class loci.plugins.util.BFVirtualStack
CacheComponent - Class in loci.formats.gui: GUI component for managing a cache.
CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent: Creates a cache GUI component.
CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent: Creates a cache GUI component with the ability to change between the various source types (mainly for debugging purposes).
CacheConsole - Class in loci.formats.tools: CacheConsole provides an interactive interpreter for testing the Bio-Formats caching implementation.
cacheDirectoryListings(boolean) - Static method in class loci.common.Location: Turn cacheing of directory listings on or off.
CacheEvent - Class in loci.formats.cache: A event indicating a cache update.
CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent: Constructs a cache event.
CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent: Constructs a cache event.
CacheException - Exception in loci.formats.cache: CacheException is the exception thrown when something goes wrong performing a cache operation.
CacheException() - Constructor for exception loci.formats.cache.CacheException
CacheException(String) - Constructor for exception loci.formats.cache.CacheException
CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException
CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException
CacheIndicator - Class in loci.formats.gui: Indicator GUI component showing which planes are currently in the cache for a given dimensional axis at a particular dimensional position.
CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator: Creates a new cache indicator for the given cache.
CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator: Creates a new cache indicator.
CacheListener - Interface in loci.formats.cache: A listener for cache updates.
CacheReporter - Interface in loci.formats.cache: Interface for components capable of reporting cache updates.
CacheSource - Class in loci.formats.cache: Superclass of cache sources that retrieve image planes from a data source (e.g., a file) using Bio-Formats.
CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource: Constructs a cache source from the given Bio-Formats reader.
CacheSource(String) - Constructor for class loci.formats.cache.CacheSource: Constructs a cache source that draws from the given file.
CacheStrategy - Class in loci.formats.cache: Superclass of cache strategies.
CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy: Constructs a cache strategy.
cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener: Called when cache is updated.
cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent: Updates GUI to match latest cache state.
cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator
CacheUpdater - Class in loci.formats.cache: Thread responsible for updating the cache (loading and dropping planes) in the background.
CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater
CalcCountRecord - Class in loci.poi.hssf.record: Title: Calc Count Record Description: Specifies the maximum times the gui should perform a formula recalculation.
CalcCountRecord() - Constructor for class loci.poi.hssf.record.CalcCountRecord
CalcCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcCountRecord: Constructs a CalcCountRecord and sets its fields appropriately
calcExtSSTRecordSize() - Method in class loci.poi.hssf.record.SSTRecord: Calculates the size in bytes of the EXTSST record as it would be if the record was serialized.
calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf: Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.
calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf: Calculates the bitdepths of the transformed components, given the bitdepth of the un-transformed components and the component tranformation type.
CalcModeRecord - Class in loci.poi.hssf.record: Title: Calc Mode Record
CalcModeRecord() - Constructor for class loci.poi.hssf.record.CalcModeRecord
CalcModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcModeRecord: Constructs a CalcModeRecord and sets its fields appropriately
calcPhotons - Variable in class loci.formats.in.SDTInfo: No of photons.
calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer: Calculates the parameters of the SubbandAn objects that depend on the Quantizer.
calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer: Calculates the parameters of the SubbandAn objects that depend on the Quantizer.
calcSize(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock: Calculate the storage size of a set of SmallDocumentBlocks
calculateStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock: Calculate how many BATBlocks are needed to hold a specified number of BAT entries.
calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock: Calculate how many XBATBlocks are needed to hold a specified number of BAT entries.
Calibrator - Class in loci.plugins.in: Logic for calibrating images.
Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator
CALLOUT__CALLOUTACCENTBAR - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTANGLE - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTDROPSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTDROPTYPE - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTLENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTMINUSX - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTMINUSY - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTTEXTBORDER - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__CALLOUTTYPE - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__DROPAUTO - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__ISCALLOUT - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__LENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
CALLOUT__XYCALLOUTGAP - Static variable in class loci.poi.ddf.EscherProperties
CAN_GROUP - Static variable in class loci.formats.FormatTools
CAN_GROUP - Static variable in interface loci.formats.IFormatReader
cancel() - Method in class loci.plugins.in.ImportProcess: Cancels the import process.
canceled - Variable in class loci.plugins.LociImporter: Flag indicating whether last operation was canceled.
canceled - Variable in class loci.plugins.Slicer: Flag indicating whether last operation was canceled.
canceled - Variable in class loci.plugins.Updater: Flag indicating whether last operation was canceled.
canChangePattern() - Method in class loci.formats.FileStitcher
canCloseReader - Variable in class loci.formats.gui.ImageViewer
canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder: Returns true if PaletteBuilder is able to create palette for given image type.
canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder: Returns true if PaletteBuilder is able to create palette for given rendered image.
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
canDoQT() - Method in class loci.formats.gui.LegacyQTTools: Whether QuickTime is available to this JVM.
canDoStacks() - Method in class loci.formats.FormatWriter
canDoStacks() - Method in interface loci.formats.IFormatWriter: Reports whether the writer can save multiple images to a single file.
canDoStacks() - Method in class loci.formats.ImageWriter
canDoStacks() - Method in class loci.formats.out.APNGWriter
canDoStacks() - Method in class loci.formats.out.AVIWriter
canDoStacks() - Method in class loci.formats.out.ICSWriter
canDoStacks() - Method in class loci.formats.out.JavaWriter
canDoStacks() - Method in class loci.formats.out.JPEG2000Writer: Overridden to indicate that stacks are not supported.
canDoStacks() - Method in class loci.formats.out.LegacyQTWriter
canDoStacks() - Method in class loci.formats.out.OMEXMLWriter
canDoStacks() - Method in class loci.formats.out.QTWriter
canDoStacks() - Method in class loci.formats.out.TiffWriter
canDoStacks() - Method in class loci.formats.out.WlzWriter
canDoStacks() - Method in class loci.formats.WriterWrapper
canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker: Return whether or not we are ever allowed to perform an upgrade check.
canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil: Checks that the provided ImageWriter can encode the provided ImageTypeSpecifier or not.
canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil: Checks that the provided ImageWriter can encode the provided ColorModel and SampleModel.
canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
canFitInMemory(long) - Static method in class loci.tests.testng.TestTools: Returns true if a byte buffer of the given size will fit in memory.
canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
canMerge() - Method in class loci.formats.ChannelMerger: Determines whether the channels in the file can be merged.
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
CANNOT_GROUP - Static variable in class loci.formats.FormatTools
CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader
CanonRawReader - Class in loci.formats.in: CanonRawReader is the file format reader for Canon RAW files.
CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader: Constructs a new Canon RAW reader.
canRead() - Method in class loci.common.Location: If the underlying location is a URL, this method will return true if the URL exists.
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
canWrite() - Method in class loci.common.Location: If the underlying location is a URL, this method will always return false.
canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
CaseInsensitiveLocation - Class in loci.common: Case insensitive variant of Location.
CaseInsensitiveLocation(String) - Constructor for class loci.common.CaseInsensitiveLocation
CaseInsensitiveLocation(File) - Constructor for class loci.common.CaseInsensitiveLocation
CaseInsensitiveLocation(String, String) - Constructor for class loci.common.CaseInsensitiveLocation
CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class loci.common.CaseInsensitiveLocation
cat(byte[][]) - Static method in class loci.poi.hpsf.Util: Concatenates the contents of several byte arrays into a single one.
Catalog - Class in mdbtools.libmdb
Catalog() - Constructor for class mdbtools.libmdb.Catalog
catalog - Variable in class mdbtools.libmdb.MdbHandle
CATEGORY_DATA_TYPE_ALL_TEXT_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
CATEGORY_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
CATEGORY_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
CATEGORY_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
CATEGORY_DATA_TYPE_SHOW_LABELS_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
CATEGORY_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
CATEGORY_DATA_TYPE_VALUE_AND_PERCENTAGE_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
CategorySeriesAxisRecord - Class in loci.poi.hssf.record: This record refers to a category or series axis and is used to specify label/tickmark frequency.
CategorySeriesAxisRecord() - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord
CategorySeriesAxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord: Constructs a CategorySeriesAxis record and sets its fields appropriately.
cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo: The length of the code-block in this packet (in bytes)
cblk - Variable in class jj2000.j2k.codestream.PrecInfo: Code-blocks belonging to this precinct in each subbands of the resolution level
CBlkCoordInfo - Class in jj2000.j2k.codestream: This class is used to store the coordinates of code-blocks.
CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo: Constructor.
CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo: Constructor.
CBlkInfo - Class in jj2000.j2k.codestream.reader: This class contains location of code-blocks' piece of codewords (there is one piece per layer) and some other information.
CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo: Constructs a new instance with specified number of layers and code-block coordinates.
CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer: This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis, fro the decoder side.
CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer: This interface defines a source of quantized wavelet coefficients and methods to transfer them in a code-block by code-block basis.
CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder: This class stores coded (compressed) code-blocks with their associated rate-distortion statistics.
CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats: Creates a new CBlkRateDistStats object without allocating any space for 'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.
CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats: Creates a new CBlkRateDistStats object and initializes the valid truncation points, their rates and their slopes, from the 'rates' and 'dist' arrays.
cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs: Code-blocks sizes specification
CBlkSizeSpec - Class in jj2000.j2k.entropy: This class extends ModuleSpec class for code-blocks sizes holding purposes.
CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec: Creates a new CBlkSizeSpec object for the specified number of tiles and components.
CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec: Creates a new CBlkSizeSpec object for the specified number of tiles and components and the ParameterList instance.
CBlkWTData - Class in jj2000.j2k.wavelet.analysis: This is a generic abstract class to store a code-block of wavelet data, be it quantized or not.
CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData
CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis: This is an implementation of the 'CBlkWTData' abstract class for 32 bit floating point data (float).
CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis: This is an implementation of the 'CBlkWTData' abstract class for signed 32 bit integer data.
CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis: This abstract class defines methods to transfer wavelet data in a code-block by code-block basis.
CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis: This abstract class defines methods to transfer wavelet data in a code-block by code-block basis, for the decoder side.
cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo: The code-block offset in the codestream (for this packet)
CBZip2InputStream - Class in loci.common: An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
CBZip2InputStream(InputStream) - Constructor for class loci.common.CBZip2InputStream: Constructs a new CBZip2InputStream which decompresses bytes read from the specified stream.
ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM
ce - Variable in class jj2000.j2k.entropy.Progression: Component index for the end of a progression.
CELL_LENGTH - Static variable in class loci.formats.tiff.IFD
CELL_TYPE_BLANK - Static variable in class loci.poi.hssf.usermodel.HSSFCell: Blank Cell type (3)
CELL_TYPE_BOOLEAN - Static variable in class loci.poi.hssf.usermodel.HSSFCell: Boolean Cell type (4)
CELL_TYPE_ERROR - Static variable in class loci.poi.hssf.usermodel.HSSFCell: Error Cell type (5)
CELL_TYPE_FORMULA - Static variable in class loci.poi.hssf.usermodel.HSSFCell: Formula Cell type (2)
CELL_TYPE_NUMERIC - Static variable in class loci.poi.hssf.usermodel.HSSFCell: Numeric Cell type (0)
CELL_TYPE_STRING - Static variable in class loci.poi.hssf.usermodel.HSSFCell: String Cell type (1)
CELL_WIDTH - Static variable in class loci.formats.tiff.IFD
cellIterator() - Method in class loci.poi.hssf.usermodel.HSSFRow
CellomicsReader - Class in loci.formats.in: Reader for Cellomics C01 files.
CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader: Constructs a new Cellomics reader.
CellReference - Class in loci.poi.hssf.util
CellReference(String) - Constructor for class loci.poi.hssf.util.CellReference
CellReference(int, int) - Constructor for class loci.poi.hssf.util.CellReference
CellReference(int, int, boolean, boolean) - Constructor for class loci.poi.hssf.util.CellReference
cells - Variable in class loci.poi.hssf.model.Sheet
CellSensReader - Class in loci.formats.in: CellSensReader is the file format reader for cellSens .vsi files.
CellSensReader() - Constructor for class loci.formats.in.CellSensReader: Constructs a new cellSens reader.
CellValueRecordInterface - Interface in loci.poi.hssf.record: The cell value record interface is implemented by all classes of type Record that contain cell values.
CellVoyagerReader - Class in loci.formats.in: A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope ( http://www.yokogawa.com/scanner/products/cv1000e.htm).
CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader
CellWorxReader - Class in loci.formats.in: CellWorxReader is the file format reader for CellWorx .pnl files.
CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader: Constructs a new CellWorx reader.
CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
CENTER_SELECTION - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
certain - Variable in class loci.formats.AxisGuesser: Whether the guesser is confident that all axis types are correct.
CF_BITMAP - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format - Bitmap
CF_DIB - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format - Device Independent Bitmap
CF_ENHMETAFILE - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format - Enhanced Windows metafile format
CF_METAFILEPICT - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format - Windows metafile format.
CFA_PATTERN - Static variable in class loci.formats.tiff.IFD
cfdHF - Variable in class loci.formats.in.SDTInfo
cfdLH - Variable in class loci.formats.in.SDTInfo
cfdLL - Variable in class loci.formats.in.SDTInfo
cfdZC - Variable in class loci.formats.in.SDTInfo
CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader
CFTAG_FMTID - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format Tag - Format ID
CFTAG_MACINTOSH - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format Tag - Macintosh clipboard format
CFTAG_NODATA - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format Tag - No Data
CFTAG_WINDOWS - Static variable in class loci.poi.hpsf.Thumbnail: Clipboard Format Tag - Windows clipboard format
chan - Variable in class loci.formats.in.SDTInfo: Routing channel number.
changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
changeName(Property, String) - Method in class loci.poi.poifs.property.DirectoryProperty: Change a Property's name
changeOutputFile(String) - Method in class loci.formats.FormatWriter
changeOutputFile(String) - Method in interface loci.formats.IFormatWriter: Switch the output file for the current dataset.
changeOutputFile(String) - Method in class loci.formats.ImageWriter
changeOutputFile(String) - Method in class loci.formats.WriterWrapper
chanMax - Variable in class loci.formats.MinMaxCalculator: Max values for each channel.
chanMin - Variable in class loci.formats.MinMaxCalculator: Min values for each channel.
channel - Variable in class loci.common.NIOFileHandle: The file channel backed by the random access file.
channel - Variable in class loci.common.NIOInputStream: The file channel backed by the random access file.
CHANNEL - Static variable in class loci.formats.FormatTools: Identifies the Channel dimensional type, representing a generic channel dimension.
Channel - Class in ome.xml.model
Channel() - Constructor for class ome.xml.model.Channel: Default constructor.
Channel(Element, OMEModel) - Constructor for class ome.xml.model.Channel: Constructs Channel recursively from an XML DOM tree.
Channel(Channel) - Constructor for class ome.xml.model.Channel: Copy constructor.
CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
CHANNEL_NAME - Static variable in class loci.formats.FormatTools
CHANNEL_NUM - Static variable in class loci.formats.FormatTools
channelColors - Variable in class loci.formats.in.BaseZeissReader
ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000: This class is designed to represent a Channel Definition Box of JPEG JP2 file format.
ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox: Constructs a ChannelDefinitionBox based on the provided ColorModel.
ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox: Constructs a ChannelDefinitionBox based on the provided content in byte array.
ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox: Constructs a ChannelDefinitionBox based on the provided channel definitions.
ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox: Constructs a ChannelDefinitionBox based on the provided org.w3c.dom.Node.
ChannelFiller - Class in loci.formats: For indexed color data representing true color, factors out the indices, replacing them with the color table values directly.
ChannelFiller() - Constructor for class loci.formats.ChannelFiller: Constructs a ChannelFiller around a new image reader.
ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller: Constructs a ChannelFiller with a given reader.
ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream
ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream
ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
channelIndices - Variable in class loci.formats.in.BaseZeissReader
ChannelMerger - Class in loci.formats: Logic to automatically merge channels in a file.
ChannelMerger() - Constructor for class loci.formats.ChannelMerger: Constructs a ChannelMerger around a new image reader.
ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger: Constructs a ChannelMerger with the given reader.
channelName - Variable in class loci.formats.in.BaseZeissReader
channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
ChannelRef - Class in ome.xml.model
ChannelRef() - Constructor for class ome.xml.model.ChannelRef: Default constructor.
ChannelRef(Element, OMEModel) - Constructor for class ome.xml.model.ChannelRef: Constructs ChannelRef recursively from an XML DOM tree.
ChannelRef(ChannelRef) - Constructor for class ome.xml.model.ChannelRef: Copy constructor.
channels - Variable in class loci.formats.codec.CodecOptions: Number of channels.
channels - Variable in class loci.formats.in.SDTInfo
channels - Variable in class loci.formats.in.SDTReader: Number of spectral channels.
ChannelSeparator - Class in loci.formats: Logic to automatically separate the channels in a file.
ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator: Constructs a ChannelSeparator around a new image reader.
ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator: Constructs a ChannelSeparator with the given reader.
chanStore - Variable in class loci.formats.in.SDTReader
characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler
characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler
ChartFormatRecord - Class in loci.poi.hssf.record: Class ChartFormatRecord
ChartFormatRecord() - Constructor for class loci.poi.hssf.record.ChartFormatRecord
ChartFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartFormatRecord: Constructs a ChartFormatRecord record and sets its fields appropriately.
ChartRecord - Class in loci.poi.hssf.record: The chart record is used to define the location and size of a chart.
ChartRecord() - Constructor for class loci.poi.hssf.record.ChartRecord
ChartRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartRecord: Constructs a Chart record and sets its fields appropriately.
check(int) - Method in class loci.poi.util.CommonsLogger: Check if a logger is enabled to log at the specified level
check(int) - Method in class loci.poi.util.NullLogger: Check if a logger is enabled to log at the specified level
check(int) - Method in class loci.poi.util.POILogger: Check if a logger is enabled to log at the specified level
check(int) - Method in class loci.poi.util.SystemOutLogger: Check if a logger is enabled to log at the specified level
checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools
checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools: Checks that the given buffer size is large enough to hold a w * h image as returned by the given reader.
checkClass(String) - Static method in class loci.plugins.util.LibraryChecker: Checks whether the given class is available.
checkClassDependency(Class<? extends Object>) - Method in class loci.common.services.AbstractService: Checks a given class dependency at runtime to ensure that a given class will be available.
checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl
checkDimsLoc(Record, int) - Method in class loci.poi.hssf.model.Sheet: in the event the record is a dimensions record, resets both the loc index and dimsloc index
checkExternSheet(int) - Method in class loci.poi.hssf.model.Workbook: returns the extern sheet number for specific sheet number , if this sheet doesn't exist in extern sheet , add it
checkHeader() - Method in class loci.formats.tiff.TiffParser: Checks the TIFF header.
checkImageJ() - Static method in class loci.plugins.util.LibraryChecker: Checks whether ImageJ is new enough for the Bio-Formats plugins.
checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker: Returns true the current ImageJ version is greater than or equal to the specified version.
checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker: Returns true the current ImageJ version is greater than or equal to the specified version.
checkJava() - Static method in class loci.plugins.util.LibraryChecker: Checks for a new enough version of the Java Runtime Environment.
checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions: Tests whether the given boolean key is set in the specified options.
checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard
checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker: Checks for a required library.
checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker: Checks whether the given class is available; if not, adds the specified JAR file name to the hash set (presumably to report it missing to the user).
checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder: Checks that the marker segment length is correct.
checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker: Reports missing libraries in the given hash set to the user.
checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions: Handles obsolete macro keys, for backward compatibility.
checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter: Ensure that the arguments that are being passed to saveBytes(...) are valid.
checkParams - Variable in class loci.formats.out.TiffWriter: Whether or not to check the parameters passed to saveBytes.
checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools: Checks that the given plane number is valid for the given reader.
checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools: Convenience method for checking that the plane number, tile size and buffer sizes are all valid for the given reader.
checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder: Checks for past errors in the decoding process using the predictable error resilient termination.
checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools: Checks whether QTJava is available, throwing an exception if not.
checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader: Wrapper for the protected method checkReadParamBandSettings.
checkRecordPosition() - Method in class loci.poi.hssf.record.RecordInputStream
checkSuffix(String, String) - Static method in class loci.formats.FormatHandler: Performs suffix matching for the given filename.
checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler: Performs suffix matching for the given filename.
checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool: Checks that no error or runtime exception in any target have occurred so far.
checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools: Checks that the given tile size is valid for the given reader.
checkValidId(String) - Static method in class loci.common.Location: Checks that the given id points at a valid data stream.
Child - Interface in loci.poi.poifs.property: This interface defines methods for finding and setting sibling Property instances
childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
chksum - Variable in class loci.formats.in.SDTInfo
CI_SERVER - Static variable in class loci.formats.UpgradeChecker: Location of the OME continuous integration server.
cIndex - Variable in class loci.formats.in.BaseZeissReader
cIndex - Variable in class loci.plugins.util.DataBrowser
CLASS_ARRAY - Static variable in class loci.poi.hssf.record.formula.Ptg
CLASS_REF - Static variable in class loci.poi.hssf.record.formula.Ptg
CLASS_VALUE - Static variable in class loci.poi.hssf.record.formula.Ptg
ClassID - Class in loci.poi.hpsf: Represents a class ID (16 bytes).
ClassID(byte[], int) - Constructor for class loci.poi.hpsf.ClassID: Creates a ClassID and reads its value from a byte array.
ClassID() - Constructor for class loci.poi.hpsf.ClassID: Creates a ClassID and initializes its value with 0x00 bytes.
classID - Variable in class loci.poi.hpsf.PropertySet: Specifies this PropertySet's "classID" field.
ClassList<T> - Class in loci.formats: ClassList is a list of classes for use with ImageReader or ImageWriter, parsed from a configuration file such as readers.txt or writers.txt.
ClassList(Class<T>) - Constructor for class loci.formats.ClassList: Constructs a list of classes, initially empty.
ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList: Constructs a list of classes from the given configuration file.
ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList: Constructs a list of classes from the given configuration file.
CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet: A value to be used with the "CleanFaxData" tag.
CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet: A value to be used with the "CleanFaxData" tag.
CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet: A value to be used with the "CleanFaxData" tag.
cleanStaleCacheEntries() - Static method in class loci.common.Location: Remove any cached directory listings that have expired.
cleanup() - Method in class loci.formats.Memoizer
cleanup() - Method in class loci.tests.testng.SubResolutionTest
clear() - Method in class loci.formats.codec.ByteVector
clear() - Method in class loci.poi.hpsf.MutableSection: Removes all properties from the section including 0 (dictionary) and 1 (codepage).
clear() - Method in class loci.poi.hssf.record.EscherAggregate
clear() - Method in class loci.poi.util.BinaryTree: Removes all mappings from this map
clear(int) - Method in class loci.poi.util.BitField: Clear the bits.
clear() - Method in class loci.poi.util.DoubleList: Removes all of the elements from this list.
clear() - Method in class loci.poi.util.IntList: Removes all of the elements from this list.
clear() - Method in class loci.poi.util.ShortList: Removes all of the elements from this list.
clearByte(byte) - Method in class loci.poi.util.BitField: Clear the bits.
clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
clearDirectoryListingsCache() - Static method in class loci.common.Location: Clear the directory listings cache.
clearEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
clearFormatting() - Method in class loci.poi.hssf.record.UnicodeString
clearFormatting() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString: Removes any formatting that may have been applied to the string.
clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
clearSections() - Method in class loci.poi.hpsf.MutablePropertySet: Removes all sections from this property set.
clearSections() - Method in class loci.poi.hpsf.SpecialPropertySet
clearSeries() - Method in class loci.plugins.in.ImporterOptions
clearShort(short) - Method in class loci.poi.util.BitField: Clear the bits.
clearSubRecords() - Method in class loci.poi.hssf.record.ObjRecord
ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool: Clears the current target error conditions, if any.
cLengths - Variable in class loci.formats.CoreMetadata: Deprecated.
use CoreMetadata.moduloC instead
cLengths - Variable in class loci.plugins.util.DataBrowser
clip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
clip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory: Clones the directory and all the fields contained therein.
clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
clone() - Method in class jj2000.j2k.ModuleSpec
clone() - Method in class loci.formats.CoreMetadata
clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata
clone() - Method in class loci.formats.SwappableMetadata
clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata
clone() - Method in class loci.poi.ddf.EscherRecord: Escher records may need to be clonable in the future.
clone() - Method in class loci.poi.ddf.EscherTextboxRecord
clone() - Method in class loci.poi.ddf.UnknownEscherRecord
clone() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
clone() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate: Performs a deep clone of the record
clone() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
clone() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate: Performs a deep clone of the record
clone() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate: Performs a deep clone of the record
clone() - Method in class loci.poi.hssf.record.AreaFormatRecord
clone() - Method in class loci.poi.hssf.record.AreaRecord
clone() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
clone() - Method in class loci.poi.hssf.record.AxisOptionsRecord
clone() - Method in class loci.poi.hssf.record.AxisParentRecord
clone() - Method in class loci.poi.hssf.record.AxisRecord
clone() - Method in class loci.poi.hssf.record.AxisUsedRecord
clone() - Method in class loci.poi.hssf.record.BarRecord
clone() - Method in class loci.poi.hssf.record.BlankRecord
clone() - Method in class loci.poi.hssf.record.BOFRecord
clone() - Method in class loci.poi.hssf.record.BoolErrRecord
clone() - Method in class loci.poi.hssf.record.BottomMarginRecord
clone() - Method in class loci.poi.hssf.record.CalcCountRecord
clone() - Method in class loci.poi.hssf.record.CalcModeRecord
clone() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
clone() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
clone() - Method in class loci.poi.hssf.record.ChartRecord
clone() - Method in class loci.poi.hssf.record.ColumnInfoRecord
clone() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
clone() - Method in class loci.poi.hssf.record.ContinueRecord: Clone this record.
clone() - Method in class loci.poi.hssf.record.DataFormatRecord
clone() - Method in class loci.poi.hssf.record.DatRecord
clone() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
clone() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
clone() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
clone() - Method in class loci.poi.hssf.record.DeltaRecord
clone() - Method in class loci.poi.hssf.record.DimensionsRecord
clone() - Method in class loci.poi.hssf.record.EndSubRecord
clone() - Method in class loci.poi.hssf.record.EOFRecord
clone() - Method in class loci.poi.hssf.record.FilePassRecord
clone() - Method in class loci.poi.hssf.record.FileSharingRecord: Clone this record.
clone() - Method in class loci.poi.hssf.record.FontBasisRecord
clone() - Method in class loci.poi.hssf.record.FontIndexRecord
clone() - Method in class loci.poi.hssf.record.FooterRecord
clone() - Method in class loci.poi.hssf.record.formula.AddPtg
clone() - Method in class loci.poi.hssf.record.formula.Area3DPtg
clone() - Method in class loci.poi.hssf.record.formula.AreaAPtg
clone() - Method in class loci.poi.hssf.record.formula.AreaErrPtg
clone() - Method in class loci.poi.hssf.record.formula.AreaNAPtg
clone() - Method in class loci.poi.hssf.record.formula.AreaNPtg
clone() - Method in class loci.poi.hssf.record.formula.AreaNVPtg
clone() - Method in class loci.poi.hssf.record.formula.AreaPtg
clone() - Method in class loci.poi.hssf.record.formula.AreaVPtg
clone() - Method in class loci.poi.hssf.record.formula.ArrayPtg
clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgA
clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgV
clone() - Method in class loci.poi.hssf.record.formula.AttrPtg
clone() - Method in class loci.poi.hssf.record.formula.BoolPtg
clone() - Method in class loci.poi.hssf.record.formula.ConcatPtg
clone() - Method in class loci.poi.hssf.record.formula.DividePtg
clone() - Method in class loci.poi.hssf.record.formula.EqualPtg
clone() - Method in class loci.poi.hssf.record.formula.ErrPtg
clone() - Method in class loci.poi.hssf.record.formula.ExpPtg
clone() - Method in class loci.poi.hssf.record.formula.FuncPtg
clone() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
clone() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
clone() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg: Implementation of clone method from Object
clone() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
clone() - Method in class loci.poi.hssf.record.formula.IntPtg
clone() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
clone() - Method in class loci.poi.hssf.record.formula.LessThanPtg: Implementation of clone method from Object
clone() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
clone() - Method in class loci.poi.hssf.record.formula.MemErrPtg
clone() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
clone() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
clone() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
clone() - Method in class loci.poi.hssf.record.formula.NamePtg
clone() - Method in class loci.poi.hssf.record.formula.NameXPtg
clone() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
clone() - Method in class loci.poi.hssf.record.formula.NumberPtg
clone() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
clone() - Method in class loci.poi.hssf.record.formula.PercentPtg
clone() - Method in class loci.poi.hssf.record.formula.PowerPtg
clone() - Method in class loci.poi.hssf.record.formula.Ptg
clone() - Method in class loci.poi.hssf.record.formula.RangePtg
clone() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
clone() - Method in class loci.poi.hssf.record.formula.RefAPtg
clone() - Method in class loci.poi.hssf.record.formula.ReferencePtg
clone() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
clone() - Method in class loci.poi.hssf.record.formula.RefNAPtg
clone() - Method in class loci.poi.hssf.record.formula.RefNPtg
clone() - Method in class loci.poi.hssf.record.formula.RefNVPtg
clone() - Method in class loci.poi.hssf.record.formula.RefVPtg
clone() - Method in class loci.poi.hssf.record.formula.StringPtg
clone() - Method in class loci.poi.hssf.record.formula.SubtractPtg
clone() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
clone() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
clone() - Method in class loci.poi.hssf.record.formula.UnionPtg
clone() - Method in class loci.poi.hssf.record.formula.UnknownPtg
clone() - Method in class loci.poi.hssf.record.FormulaRecord
clone() - Method in class loci.poi.hssf.record.FrameRecord
clone() - Method in class loci.poi.hssf.record.GridsetRecord
clone() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
clone() - Method in class loci.poi.hssf.record.GutsRecord
clone() - Method in class loci.poi.hssf.record.HCenterRecord
clone() - Method in class loci.poi.hssf.record.HeaderRecord
clone() - Method in class loci.poi.hssf.record.IndexRecord
clone() - Method in class loci.poi.hssf.record.IterationRecord
clone() - Method in class loci.poi.hssf.record.LabelRecord
clone() - Method in class loci.poi.hssf.record.LabelSSTRecord
clone() - Method in class loci.poi.hssf.record.LeftMarginRecord
clone() - Method in class loci.poi.hssf.record.LegendRecord
clone() - Method in class loci.poi.hssf.record.LineFormatRecord
clone() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
clone() - Method in class loci.poi.hssf.record.LinkedDataRecord
clone() - Method in class loci.poi.hssf.record.MergeCellsRecord
clone() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
clone() - Method in class loci.poi.hssf.record.NumberRecord
clone() - Method in class loci.poi.hssf.record.ObjectLinkRecord
clone() - Method in class loci.poi.hssf.record.ObjectProtectRecord
clone() - Method in class loci.poi.hssf.record.ObjRecord
clone() - Method in class loci.poi.hssf.record.PageBreakRecord
clone() - Method in class loci.poi.hssf.record.PaneRecord
clone() - Method in class loci.poi.hssf.record.PasswordRecord: Clone this record.
clone() - Method in class loci.poi.hssf.record.PlotAreaRecord
clone() - Method in class loci.poi.hssf.record.PlotGrowthRecord
clone() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
clone() - Method in class loci.poi.hssf.record.PrintHeadersRecord
clone() - Method in class loci.poi.hssf.record.PrintSetupRecord
clone() - Method in class loci.poi.hssf.record.ProtectRecord
clone() - Method in class loci.poi.hssf.record.Record
clone() - Method in class loci.poi.hssf.record.RefModeRecord
clone() - Method in class loci.poi.hssf.record.RightMarginRecord
clone() - Method in class loci.poi.hssf.record.RKRecord
clone() - Method in class loci.poi.hssf.record.RowRecord
clone() - Method in class loci.poi.hssf.record.SaveRecalcRecord
clone() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
clone() - Method in class loci.poi.hssf.record.SCLRecord
clone() - Method in class loci.poi.hssf.record.SelectionRecord
clone() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
clone() - Method in class loci.poi.hssf.record.SeriesIndexRecord
clone() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
clone() - Method in class loci.poi.hssf.record.SeriesListRecord
clone() - Method in class loci.poi.hssf.record.SeriesRecord
clone() - Method in class loci.poi.hssf.record.SeriesTextRecord
clone() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
clone() - Method in class loci.poi.hssf.record.SharedFormulaRecord
clone() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
clone() - Method in class loci.poi.hssf.record.StringRecord
clone() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
clone() - Method in class loci.poi.hssf.record.TextRecord
clone() - Method in class loci.poi.hssf.record.TickRecord
clone() - Method in class loci.poi.hssf.record.TopMarginRecord
clone() - Method in class loci.poi.hssf.record.UnicodeString
clone() - Method in class loci.poi.hssf.record.UnitsRecord
clone() - Method in class loci.poi.hssf.record.UnknownRecord: Unlike the other Record.clone methods this is a shallow clone
clone() - Method in class loci.poi.hssf.record.ValueRangeRecord
clone() - Method in class loci.poi.hssf.record.VCenterRecord
clone() - Method in class loci.poi.hssf.record.WindowTwoRecord
clone() - Method in class loci.poi.hssf.record.WSBoolRecord
clone() - Method in class mdbtools.libmdb.MdbColumn
clone() - Method in class mdbtools.libmdb.MdbSarg
cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
cloneSheet() - Method in class loci.poi.hssf.model.Sheet: Clones the low level records of this sheet and returns the new sheet instance.
cloneSheet(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: create an HSSFSheet from an existing sheet in the HSSFWorkbook.
close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream: Invokes the superclass method and sets the internal reference to the source FileChannel to null.
close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream: Invokes the superclass method, writes any unwritten data, and sets the internal reference to the source FileChannel to null.
close() - Method in class com.sun.media.imageio.stream.RawImageInputStream
close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter: Closes the underlying resource (file, stream, network connection, etc.).
close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter: Writes the EOC marker and closes the underlying stream.
close() - Method in class jj2000.j2k.image.input.ImgReader: Closes the underlying file or network connection from where the image data is being read.
close() - Method in class jj2000.j2k.image.input.ImgReaderPGM: Closes the underlying RandomAccessFile from where the image data is being read.
close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile: Closes the buffered random access file
close() - Method in interface jj2000.j2k.io.RandomAccessIO: Closes the I/O stream.
close() - Method in class jj2000.j2k.util.ISRandomAccessIO: Closes this object for reading as well as the wrapped InputStream, if not already closed.
close() - Method in class loci.common.ByteArrayHandle
close() - Method in class loci.common.CBZip2InputStream
close() - Method in class loci.common.FileHandle
close() - Method in interface loci.common.IRandomAccess: Closes this random access stream and releases any system resources associated with the stream.
close() - Method in class loci.common.NIOFileHandle
close() - Method in class loci.common.NIOInputStream: Closes the streams.
close() - Method in class loci.common.RandomAccessInputStream: Closes the streams.
close() - Method in class loci.common.RandomAccessOutputStream
close() - Method in class loci.common.StreamHandle
close() - Method in class loci.common.ZipHandle
close(boolean) - Method in class loci.formats.ChannelSeparator
close() - Method in class loci.formats.codec.JPEGTileDecoder
close(boolean) - Method in class loci.formats.DelegateReader
close() - Method in class loci.formats.FileStitcher
close(boolean) - Method in class loci.formats.FileStitcher
close(boolean) - Method in class loci.formats.FormatReader
close() - Method in class loci.formats.FormatReader
close() - Method in class loci.formats.FormatWriter
close() - Method in class loci.formats.gui.PreviewPane: Closes the underlying image reader.
close(boolean) - Method in interface loci.formats.IFormatReader: Closes the currently open file.
close(boolean) - Method in class loci.formats.ImageReader
close() - Method in class loci.formats.ImageReader
close() - Method in class loci.formats.ImageWriter
close(boolean) - Method in class loci.formats.in.AFIReader
close(boolean) - Method in class loci.formats.in.AIMReader
close(boolean) - Method in class loci.formats.in.AliconaReader
close(boolean) - Method in class loci.formats.in.AnalyzeReader
close(boolean) - Method in class loci.formats.in.APLReader
close(boolean) - Method in class loci.formats.in.APNGReader
close(boolean) - Method in class loci.formats.in.AVIReader
close(boolean) - Method in class loci.formats.in.BaseZeissReader
close(boolean) - Method in class loci.formats.in.BDReader
close(boolean) - Method in class loci.formats.in.BioRadReader
close(boolean) - Method in class loci.formats.in.BioRadSCNReader
close(boolean) - Method in class loci.formats.in.BMPReader
close(boolean) - Method in class loci.formats.in.BrukerReader
close(boolean) - Method in class loci.formats.in.BurleighReader
close(boolean) - Method in class loci.formats.in.CanonRawReader
close(boolean) - Method in class loci.formats.in.CellomicsReader
close(boolean) - Method in class loci.formats.in.CellSensReader
close(boolean) - Method in class loci.formats.in.CellWorxReader
close(boolean) - Method in class loci.formats.in.DeltavisionReader
close(boolean) - Method in class loci.formats.in.DicomReader
close(boolean) - Method in class loci.formats.in.DNGReader
close(boolean) - Method in class loci.formats.in.EPSReader
close(boolean) - Method in class loci.formats.in.FakeReader
close(boolean) - Method in class loci.formats.in.FEIReader
close(boolean) - Method in class loci.formats.in.FEITiffReader
close(boolean) - Method in class loci.formats.in.FitsReader
close(boolean) - Method in class loci.formats.in.FlexReader
close(boolean) - Method in class loci.formats.in.FluoviewReader
close(boolean) - Method in class loci.formats.in.FujiReader
close(boolean) - Method in class loci.formats.in.FV1000Reader
close(boolean) - Method in class loci.formats.in.GatanDM2Reader
close(boolean) - Method in class loci.formats.in.GatanReader
close(boolean) - Method in class loci.formats.in.GIFReader
close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
close(boolean) - Method in class loci.formats.in.HitachiReader
close(boolean) - Method in class loci.formats.in.HRDGDFReader
close(boolean) - Method in class loci.formats.in.ICSReader
close(boolean) - Method in class loci.formats.in.ImaconReader
close(boolean) - Method in class loci.formats.in.ImageIOReader
close(boolean) - Method in class loci.formats.in.ImagicReader
close(boolean) - Method in class loci.formats.in.ImarisHDFReader
close(boolean) - Method in class loci.formats.in.ImarisReader
close(boolean) - Method in class loci.formats.in.IMODReader
close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
close(boolean) - Method in class loci.formats.in.ImspectorReader
close(boolean) - Method in class loci.formats.in.InCell3000Reader
close(boolean) - Method in class loci.formats.in.InCellReader
close(boolean) - Method in class loci.formats.in.InveonReader
close(boolean) - Method in class loci.formats.in.IPLabReader
close(boolean) - Method in class loci.formats.in.IPWReader
close(boolean) - Method in class loci.formats.in.IvisionReader
close(boolean) - Method in class loci.formats.in.JEOLReader
close(boolean) - Method in class loci.formats.in.JPEG2000Reader
close(boolean) - Method in class loci.formats.in.JPEGReader
close(boolean) - Method in class loci.formats.in.JPXReader
close(boolean) - Method in class loci.formats.in.KhorosReader
close(boolean) - Method in class loci.formats.in.KodakReader
close(boolean) - Method in class loci.formats.in.L2DReader
close(boolean) - Method in class loci.formats.in.LegacyQTReader
close(boolean) - Method in class loci.formats.in.LeicaReader
close(boolean) - Method in class loci.formats.in.LeicaSCNReader
close(boolean) - Method in class loci.formats.in.LiFlimReader
close(boolean) - Method in class loci.formats.in.LIFReader
close(boolean) - Method in class loci.formats.in.LIMReader
close(boolean) - Method in class loci.formats.in.MetamorphReader
close(boolean) - Method in class loci.formats.in.MIASReader
close(boolean) - Method in class loci.formats.in.MicromanagerReader
close(boolean) - Method in class loci.formats.in.MINCReader
close(boolean) - Method in class loci.formats.in.MinimalTiffReader
close(boolean) - Method in class loci.formats.in.MNGReader
close(boolean) - Method in class loci.formats.in.MolecularImagingReader
close(boolean) - Method in class loci.formats.in.MRCReader
close(boolean) - Method in class loci.formats.in.MRWReader
close(boolean) - Method in class loci.formats.in.NAFReader
close(boolean) - Method in class loci.formats.in.NativeND2Reader
close(boolean) - Method in class loci.formats.in.NativeQTReader
close(boolean) - Method in class loci.formats.in.NDPIReader
close(boolean) - Method in class loci.formats.in.NDPISReader
close(boolean) - Method in class loci.formats.in.NiftiReader
close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader
close(boolean) - Method in class loci.formats.in.NikonReader
close(boolean) - Method in class loci.formats.in.NikonTiffReader
close(boolean) - Method in class loci.formats.in.NRRDReader
close(boolean) - Method in class loci.formats.in.OBFReader
close(boolean) - Method in class loci.formats.in.OMETiffReader
close(boolean) - Method in class loci.formats.in.OMEXMLReader
close(boolean) - Method in class loci.formats.in.OpenlabRawReader
close(boolean) - Method in class loci.formats.in.OpenlabReader
close(boolean) - Method in class loci.formats.in.OperettaReader
close(boolean) - Method in class loci.formats.in.PCIReader
close(boolean) - Method in class loci.formats.in.PCORAWReader
close(boolean) - Method in class loci.formats.in.PCXReader
close(boolean) - Method in class loci.formats.in.PDSReader
close(boolean) - Method in class loci.formats.in.PerkinElmerReader
close(boolean) - Method in class loci.formats.in.PGMReader
close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader
close(boolean) - Method in class loci.formats.in.PictReader
close(boolean) - Method in class loci.formats.in.PrairieReader
close(boolean) - Method in class loci.formats.in.PSDReader
close(boolean) - Method in class loci.formats.in.QuesantReader
close(boolean) - Method in class loci.formats.in.RHKReader
close(boolean) - Method in class loci.formats.in.SBIGReader
close(boolean) - Method in class loci.formats.in.ScanrReader
close(boolean) - Method in class loci.formats.in.ScreenReader
close(boolean) - Method in class loci.formats.in.SDTReader
close(boolean) - Method in class loci.formats.in.SIFReader
close(boolean) - Method in class loci.formats.in.SimplePCITiffReader
close(boolean) - Method in class loci.formats.in.SISReader
close(boolean) - Method in class loci.formats.in.SlidebookReader
close(boolean) - Method in class loci.formats.in.SlidebookTiffReader
close(boolean) - Method in class loci.formats.in.SpiderReader
close(boolean) - Method in class loci.formats.in.SVSReader
close(boolean) - Method in class loci.formats.in.TargaReader
close(boolean) - Method in class loci.formats.in.TCSReader
close(boolean) - Method in class loci.formats.in.TextReader
close(boolean) - Method in class loci.formats.in.TiffReader
close(boolean) - Method in class loci.formats.in.TileJPEGReader
close(boolean) - Method in class loci.formats.in.TillVisionReader
close(boolean) - Method in class loci.formats.in.TopometrixReader
close(boolean) - Method in class loci.formats.in.TrestleReader
close(boolean) - Method in class loci.formats.in.UBMReader
close(boolean) - Method in class loci.formats.in.UnisokuReader
close(boolean) - Method in class loci.formats.in.VarianFDFReader
close(boolean) - Method in class loci.formats.in.VisitechReader
close(boolean) - Method in class loci.formats.in.VolocityClippingReader
close(boolean) - Method in class loci.formats.in.VolocityReader
close(boolean) - Method in class loci.formats.in.WlzReader
close(boolean) - Method in class loci.formats.in.ZeissCZIReader
close(boolean) - Method in class loci.formats.in.ZeissLSMReader
close(boolean) - Method in class loci.formats.in.ZeissTIFFReader
close(boolean) - Method in class loci.formats.in.ZeissZVIReader
close(boolean) - Method in class loci.formats.in.ZipReader
close() - Method in class loci.formats.Memoizer
close(boolean) - Method in class loci.formats.Memoizer
close() - Method in interface loci.formats.Memoizer.Deser
close() - Method in class loci.formats.Memoizer.KryoDeser
close(boolean) - Method in class loci.formats.MinMaxCalculator
close() - Method in class loci.formats.out.APNGWriter
close() - Method in class loci.formats.out.AVIWriter
close() - Method in class loci.formats.out.ICSWriter
close() - Method in class loci.formats.out.JavaWriter
close() - Method in class loci.formats.out.LegacyQTWriter
close() - Method in class loci.formats.out.OMETiffWriter
close() - Method in class loci.formats.out.OMEXMLWriter
close() - Method in class loci.formats.out.QTWriter
close() - Method in class loci.formats.out.TiffWriter
close() - Method in class loci.formats.out.WlzWriter
close(boolean) - Method in class loci.formats.ReaderWrapper
close() - Method in class loci.formats.ReaderWrapper
close() - Method in interface loci.formats.services.JPEGTurboService
close() - Method in class loci.formats.services.JPEGTurboServiceImpl
close() - Method in interface loci.formats.services.MDBService: Close the currently initialized file.
close() - Method in class loci.formats.services.MDBServiceImpl
close() - Method in interface loci.formats.services.MetakitService
close() - Method in class loci.formats.services.MetakitServiceImpl
close() - Method in interface loci.formats.services.NetCDFService: Closes and resets the service.
close() - Method in class loci.formats.services.NetCDFServiceImpl
close() - Method in interface loci.formats.services.POIService: Close the current POI file system.
close() - Method in class loci.formats.services.POIServiceImpl
close() - Method in interface loci.formats.services.WlzService: Closes the file.
close() - Method in class loci.formats.services.WlzServiceImpl
close() - Method in class loci.formats.tiff.OnDemandLongArray
close() - Method in class loci.formats.WriterWrapper
close() - Method in class loci.plugins.config.TextAreaWriter: Closing a TextAreaWriter does nothing.
close() - Method in class loci.plugins.macro.LociFunctions
close() - Method in class loci.plugins.util.VirtualImagePlus
close() - Method in class loci.plugins.util.VirtualReader
close() - Method in class loci.poi.poifs.filesystem.DocumentInputStream: Closes this input stream and releases any system resources associated with the stream.
close() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream: Closes this output stream and releases any system resources associated with this stream.
close() - Method in class loci.poi.util.BlockingInputStream
close() - Method in class loci.tests.testng.FormatReaderTest
close() - Method in class mdbtools.examples.MemoryRandomAccess
close() - Method in class mdbtools.jdbc2.File
close() - Method in class mdbtools.libmdb.MdbFile
close() - Method in class mdbtools.libmdb.MdbHandle
close() - Method in interface mdbtools.publicapi.RandomAccess
close() - Method in class ome.metakit.MetakitReader: Close the reader and release any resources in use.
CLOSED_CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty
CLOSED_POLYGON - Static variable in class loci.poi.ddf.EscherShapePathProperty
closeFile() - Method in class loci.formats.tools.MakeDatasetStructureTable: Close the output file.
closeFileOnly() - Method in class loci.plugins.macro.LociFunctions
cm - Variable in class loci.formats.FormatWriter: Default color model.
COBOL - Static variable in class loci.common.DateTools
COBOL_EPOCH - Static variable in class loci.common.DateTools
coc - Variable in class jj2000.j2k.codestream.HeaderInfo: Reference to the COC marker segments found in main and first tile-part header.
COC - Static variable in interface jj2000.j2k.codestream.Markers: Coding style component (COC): 0xFF53
cod - Variable in class jj2000.j2k.codestream.HeaderInfo: Reference to the COD marker segments found in main and first tile-part header.
COD - Static variable in interface jj2000.j2k.codestream.Markers: Coding style default (COD): 0xFF52
codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions: The maximum code-block size to use per tile-component as it would be provided to: J2KImageWriteParam.setCodeBlockSize(int[]) (WRITE).
Codec - Interface in loci.formats.codec: This class is an interface for any kind of compression or decompression.
codec - Variable in class loci.formats.out.LegacyQTWriter: The codec to use.
codec - Variable in class loci.formats.out.QTWriter: The codec to use.
CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter: Value indicating Animation codec.
CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter: Value indicating Cinepak codec.
CODEC_H_263 - Static variable in class loci.formats.out.QTWriter: Value indicating H.263 codec.
CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter: Value indicating Motion JPEG-B codec.
CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter: Value indicating MPEG-4 codec.
CODEC_RAW - Static variable in class loci.formats.out.QTWriter: Value indicating Raw codec.
CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter: Value indicating Sorenson codec.
CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter: Value indicating Sorenson 3 codec.
CodecOptions - Class in loci.formats.codec: Options for compressing and decompressing data.
CodecOptions() - Constructor for class loci.formats.codec.CodecOptions: Construct a new CodecOptions.
CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions: Construct a new CodecOptions using the given CodecOptions.
CodedCBlk - Class in jj2000.j2k.entropy: This is the generic class to store coded (compressed) code-block.
CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk: Creates a new CodedCBlk object wit the default values and without allocating any space for its members.
CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk: Creates a new CodedCBlk object with the specified values.
CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder: This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.
CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder: This interface defines a source of entropy coded data and methods to transfer it in a code-block by code-block basis.
CodedEnum - Interface in loci.common.enumeration: Enumeration which is coded.
CODEPAGE - Static variable in class loci.poi.hssf.record.CodepageRecord: the likely correct value for CODEPAGE (at least for US versions).
CODEPAGE - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord: suggested (and probably correct) default
CodepageRecord - Class in loci.poi.hssf.record: Title: Codepage Record
CodepageRecord() - Constructor for class loci.poi.hssf.record.CodepageRecord
CodepageRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CodepageRecord: Constructs a CodepageRecord and sets its fields appropriately
codepageToEncoding(int) - Static method in class loci.poi.hpsf.VariantSupport: Turns a codepage number into the equivalent character encoding's name.
CodestreamManipulator - Class in jj2000.j2k.util: This class takes a legal JPEG 2000 codestream and performs some manipulation on it.
CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator: Instantiates a codestream manipulator..
CodestreamWriter - Class in jj2000.j2k.codestream.writer: This is the abstract class for writing to a bit stream.
CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter: Allocates this object and initializes the maximum numner of bytes.
codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder: This function performs the arithmetic encoding of one symbol.
codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder: This function performs the arithmetic encoding of several symbols together.
col_fixed_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
col_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion: upper right hand corner col
col_num - Variable in class mdbtools.libmdb.MdbColumn
col_num_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
col_prec - Variable in class mdbtools.libmdb.MdbColumn
col_scale - Variable in class mdbtools.libmdb.MdbColumn
col_size - Variable in class mdbtools.libmdb.MdbColumn
col_size_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
col_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion: lower right hand corner col
col_type - Variable in class mdbtools.libmdb.MdbColumn
colBreaks - Variable in class loci.poi.hssf.model.Sheet
colCount - Variable in class loci.formats.in.BaseZeissReader
collapseColInfoRecords(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
collapseColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
collapseRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
Color - Class in ome.xml.model.primitives: Primitive type that represents an RGBA color.
Color(Integer) - Constructor for class ome.xml.model.primitives.Color
Color(int, int, int, int) - Constructor for class ome.xml.model.primitives.Color
COLOR_MAP - Static variable in class loci.formats.tiff.IFD
COLOR_MODE_COLORIZED - Static variable in class loci.plugins.in.ImporterOptions
COLOR_MODE_COMPOSITE - Static variable in class loci.plugins.in.ImporterOptions
COLOR_MODE_CUSTOM - Static variable in class loci.plugins.in.ImporterOptions
COLOR_MODE_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions
COLOR_MODE_GRAYSCALE - Static variable in class loci.plugins.in.ImporterOptions
COLOR_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont: normal type of black color.
COLOR_RED - Static variable in class loci.poi.hssf.usermodel.HSSFFont: Dark Red color
COLOR_SPACE - Static variable in class loci.formats.tiff.IFD
COLOR_SPACE_SRGB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ColorSpace" tag.
COLOR_SPACE_UNCALIBRATED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ColorSpace" tag.
colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: A TIFFColorConverter object describing the color space of the encoded pixel data, or null.
colorCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
ColorDialog - Class in loci.plugins.in: Bio-Formats Importer custom color chooser dialog box.
ColorDialog(ImportProcess) - Constructor for class loci.plugins.in.ColorDialog
Colorizer - Class in loci.plugins.in: Logic for colorizing images.
Colorizer(ImportProcess) - Constructor for class loci.plugins.in.Colorizer
colorMap - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The value of the ColorMap tag.
colorModeChoice - Variable in class loci.plugins.in.MainDialog
colorModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage: The image's ColorModel.
colorModel - Variable in class loci.formats.codec.CodecOptions: Color model to use when constructing an image (WRITE).
colorResolution - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
colorsImportant - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
colorSpace - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
ColorSpecificationBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000: This class is defined to represent a Color Specification Box of JPEG JP2 file format.
ColorSpecificationBox(byte, byte, byte, int, ICC_Profile) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox: Creates a ColorSpecificationBox from the provided data elements.
ColorSpecificationBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox: Creates a ColorSpecificationBox from the provided byte array.
ColorSpecificationBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox: Constructs a ColorSpecificationBox based on the provided org.w3c.dom.Node.
colorsUsed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
colorTableSizes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
COLOUR_SPECIFICATION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
colT - Variable in class loci.formats.in.SDTInfo
column - Variable in class loci.formats.tools.AmiraParameters
Column - Class in ome.metakit: Class representing a column in a Metakit database file.
Column(String) - Constructor for class ome.metakit.Column: Construct a new column from the given string representation.
ColumnComparator - Class in mdbtools.dbengine: Compare the values from a column in two rows
ColumnComparator() - Constructor for class mdbtools.dbengine.ColumnComparator
ColumnInfoRecord - Class in loci.poi.hssf.record: Title: ColumnInfo Record
ColumnInfoRecord() - Constructor for class loci.poi.hssf.record.ColumnInfoRecord
ColumnInfoRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ColumnInfoRecord: Constructs a ColumnInfo record and sets its fields appropriately
ColumnInfoRecordsAggregate - Class in loci.poi.hssf.record.aggregates
ColumnInfoRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
ColumnMap - Class in ome.metakit: Class representating a column mapping in a Metakit database file.
ColumnMap(Column, RandomAccessInputStream, int) - Constructor for class ome.metakit.ColumnMap
columns - Variable in class loci.poi.hssf.model.Sheet
columns - Variable in class mdbtools.libmdb.MdbTableDef
ColumnTest - Class in mdbtools.tests
ColumnTest() - Constructor for class mdbtools.tests.ColumnTest
com - Variable in class jj2000.j2k.codestream.HeaderInfo: Reference to the COM marker segments found in main and tile-part headers.
COM - Static variable in interface jj2000.j2k.codestream.Markers: Comment (COM): 0xFF64
com.luratech.lwf - package com.luratech.lwf
com.sun.media.imageio.plugins.bmp - package com.sun.media.imageio.plugins.bmp: Package containing the public classes used by the Sun BMP plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.jpeg2000 - package com.sun.media.imageio.plugins.jpeg2000: Package containing the public classes used by the Sun JPEG 2000 plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.pnm - package com.sun.media.imageio.plugins.pnm: Package containing the public classes used by the Sun PNM plug-in for the Image I/O Framework.
com.sun.media.imageio.plugins.tiff - package com.sun.media.imageio.plugins.tiff: Package containing the public classes used by the TIFF plug-in for the Image I/O Framework.
com.sun.media.imageio.stream - package com.sun.media.imageio.stream: Provides ImageInputStream and ImageOutputStream classes for use with the Java Image I/O Framework.
com.sun.media.imageioimpl.common - package com.sun.media.imageioimpl.common
com.sun.media.imageioimpl.plugins.bmp - package com.sun.media.imageioimpl.plugins.bmp
com.sun.media.imageioimpl.plugins.clib - package com.sun.media.imageioimpl.plugins.clib
com.sun.media.imageioimpl.plugins.gif - package com.sun.media.imageioimpl.plugins.gif
com.sun.media.imageioimpl.plugins.jpeg - package com.sun.media.imageioimpl.plugins.jpeg
com.sun.media.imageioimpl.plugins.jpeg2000 - package com.sun.media.imageioimpl.plugins.jpeg2000
com.sun.media.imageioimpl.plugins.pcx - package com.sun.media.imageioimpl.plugins.pcx
com.sun.media.imageioimpl.plugins.png - package com.sun.media.imageioimpl.plugins.png
com.sun.media.imageioimpl.plugins.pnm - package com.sun.media.imageioimpl.plugins.pnm
com.sun.media.imageioimpl.plugins.raw - package com.sun.media.imageioimpl.plugins.raw
com.sun.media.imageioimpl.plugins.tiff - package com.sun.media.imageioimpl.plugins.tiff
com.sun.media.imageioimpl.plugins.wbmp - package com.sun.media.imageioimpl.plugins.wbmp
com.sun.media.imageioimpl.stream - package com.sun.media.imageioimpl.stream
com.sun.media.jai.imageioimpl - package com.sun.media.jai.imageioimpl
com.sun.media.jai.operator - package com.sun.media.jai.operator: Provides JAI operations which read and write images using the Java Image I/O Framework.
ComboFileFilter - Class in loci.formats.gui: A file filter that recognizes files from a union of other filters.
ComboFileFilter(FileFilter[], String) - Constructor for class loci.formats.gui.ComboFileFilter: Constructs a new filter from a list of other filters.
CommentAnnotation - Class in ome.xml.model
CommentAnnotation() - Constructor for class ome.xml.model.CommentAnnotation: Default constructor.
CommentAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.CommentAnnotation: Constructs CommentAnnotation recursively from an XML DOM tree.
CommentAnnotation(CommentAnnotation) - Constructor for class ome.xml.model.CommentAnnotation: Copy constructor.
comments - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
comments - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
CommentShape - Class in loci.poi.hssf.model: Represents a cell comment.
CommentShape(HSSFComment, int) - Constructor for class loci.poi.hssf.model.CommentShape: Creates the low-level records for a comment.
commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter: Writes the header data to the bit stream, if it has not been already done.
commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter: Writes the header data in the codestream and actualize ndata with the header length.
CommonObjectDataSubRecord - Class in loci.poi.hssf.record: The common object data record is used to store all common preferences for an excel object.
CommonObjectDataSubRecord() - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord
CommonObjectDataSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord: Constructs a CommonObjectData record and sets its fields appropriately.
CommonsLogger - Class in loci.poi.util: A logger class that strives to make it as easy as possible for developers to write log calls, while simultaneously making those calls as cheap as possible by performing lazy evaluation of the log message.
CommonsLogger() - Constructor for class loci.poi.util.CommonsLogger
comp - Variable in class jj2000.j2k.roi.encoder.ROI: The components for which the ROI is relevant
COMP_POS_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType: The bit stream is Component/Position/Resolution/Layer progressive : 4
COMPANION_SUFFIXES - Static variable in class loci.formats.in.TiffReader
compare(Object, Object) - Method in class loci.formats.cache.CacheStrategy: Default comparator orders dimensional positions based on distance from the current position, taking into account axis priorities and planar ordering.
compare(Object, Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator: compare method.
compareTo(Object) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField: Compares this TIFFField with another TIFFField by comparing the tags.
compareTo(Object) - Method in class loci.formats.gui.ComboFileFilter: Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.gui.ExtensionFileFilter: Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.gui.FormatFileFilter: Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.gui.NoExtensionFileFilter: Compares two FileFilter objects alphanumerically.
compareTo(Object) - Method in class loci.formats.tiff.TiffIFDEntry
compareTo(TiffRational) - Method in class loci.formats.tiff.TiffRational: Compares this object with the specified object for order.
compareTo(Object) - Method in class loci.plugins.config.FormatEntry
compareTo(Object) - Method in class loci.plugins.config.LibraryEntry
compareTo(ThumbLoader.SeriesInfo) - Method in class loci.plugins.in.ThumbLoader.SeriesInfo
compareTo(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
compareTo(Object) - Method in class loci.poi.hssf.record.BlankRecord
compareTo(Object) - Method in class loci.poi.hssf.record.BoolErrRecord
compareTo(Object) - Method in class loci.poi.hssf.record.FormulaRecord
compareTo(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord
compareTo(Object) - Method in class loci.poi.hssf.record.NumberRecord
compareTo(Object) - Method in class loci.poi.hssf.record.RowRecord
compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString
compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString: Compares one rich text string to another.
compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow
compareTo(Region) - Method in class loci.poi.hssf.util.Region: Compares that the given region is the same less than or greater than this region.
compareTo(Object) - Method in class loci.poi.hssf.util.Region
compDef - Variable in class jj2000.j2k.ModuleSpec: The default value for each component.
COMPLEX - Static variable in class loci.poi.ddf.EscherShapePathProperty
COMPONENT_MAPPING_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
ComponentMappingBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000: This class is defined to represent a Color Specification Box of JPEG JP2 file format.
ComponentMappingBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox: Constructs a ComponentMappingBox from the provided content byte array.
ComponentMappingBox(short[], byte[], byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox: Constructs a ComponentMappingBox from the provided component mapping.
ComponentMappingBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox: Constructs a ComponentMappingBox based on the provided org.w3c.dom.Node.
COMPONENTS_CONFIGURATION - Static variable in class loci.formats.tiff.IFD
COMPONENTS_CONFIGURATION_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_CB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_CR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_DOES_NOT_EXIST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_G - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_R - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ComponentsConfiguration" tag.
COMPONENTS_CONFIGURATION_Y - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "ComponentsConfiguration" tag.
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box: Composes the content byte array from the data elements.
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor: Append newString to the end of oldString.
composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil: Append newString to the end of oldString.
compress(byte[], int, int) - Method in class com.sun.media.imageioimpl.common.LZWCompressor
compress(byte[], CodecOptions) - Method in class loci.formats.codec.Base64Codec
compress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec: 2D data block encoding default implementation.
compress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec: Compresses a block of data.
compress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec: Compresses a block of data.
compress(byte[], CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec: The CodecOptions parameter should have the following fields set: width height bitsPerSample channels interleaved littleEndian lossless
compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGCodec: The CodecOptions parameter should have the following fields set: width height channels bitsPerSample interleaved littleEndian signed
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZOCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZWCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.MJPBCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSRLECodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSVideoCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.NikonCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.PackbitsCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.RPZACodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.TargaRLECodec
compress(byte[], CodecOptions) - Method in class loci.formats.codec.ZlibCodec
compress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression: Encodes a strip of data.
compress(byte[]) - Static method in class loci.poi.ddf.EscherBlipWMFRecord: Compress the contents of the provided array
compressBuffer(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer: Compresses the buffer.
CompressDecompressTest - Class in loci.tests.testng: Tests the various codec used to compress and decompress data.
CompressDecompressTest() - Constructor for class loci.tests.testng.CompressDecompressTest
compressed - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
COMPRESSED_BITS_PER_PIXEL - Static variable in class loci.formats.tiff.IFD
compression - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: The value of the Compression tag.
compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
compression - Variable in class loci.formats.FormatWriter: Current compression type.
COMPRESSION - Static variable in class loci.formats.tiff.IFD
Compression - Enum in ome.xml.model.enums
COMPRESSION_CCITT_RLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_CCITT_T_4 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_CCITT_T_6 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_DEFLATE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_GZIP - Static variable in class loci.formats.in.LiFlimReader
COMPRESSION_J2K - Static variable in class loci.formats.out.TiffWriter
COMPRESSION_J2K_LOSSY - Static variable in class loci.formats.out.TiffWriter
COMPRESSION_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_JPEG - Static variable in class loci.formats.out.TiffWriter
COMPRESSION_KEY - Static variable in class loci.formats.in.LiFlimReader
COMPRESSION_LZW - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_LZW - Static variable in class loci.formats.out.TiffWriter
COMPRESSION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_NONE - Static variable in class loci.formats.in.LiFlimReader
COMPRESSION_OLD_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_PACKBITS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
COMPRESSION_SUFFIXES - Static variable in class loci.formats.FormatHandler: Suffixes for supported compression types.
COMPRESSION_UNCOMPRESSED - Static variable in class loci.formats.out.TiffWriter
COMPRESSION_ZLIB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet: A value to be used with the "Compression" tag.
CompressionEnumHandler - Class in ome.xml.model.enums.handlers: Enumeration handler for Compression.
CompressionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CompressionEnumHandler
compressionNumbers - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter: Compression tag values for known compression types.
compressionTagValue - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor: The value to be assigned to the TIFF Compression tag in the TIFF image metadata.
compressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor: The name of the compression type supported by this compressor.
CompressionType - Enum in loci.formats.codec: An enumeration of compression types.
compressionTypeNames - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
compressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter: Known TIFF compression types.
compressionTypes - Variable in class loci.formats.FormatWriter: Available compression types.
compressionTypes - Variable in class loci.formats.ImageWriter: Compression types for all file format writers.
CompTransfSpec - Class in jj2000.j2k.image: This class extends ModuleSpec class in order to hold tile specifications for component transformation
CompTransfSpec(int, int, byte) - Constructor for class jj2000.j2k.image.CompTransfSpec: Constructs an empty 'CompTransfSpec' with specified number of tile and components.
computeAxisLengths() - Method in class loci.formats.FileStitcher: Computes axis length arrays, and total axis lengths.
computeIndices(int) - Method in class loci.formats.FileStitcher: Gets the file index, and image index into that file, corresponding to the given global image index.
computeRegionsWrapper(ImageReadParam, boolean, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader: Wrapper for the protected method computeRegions.
computeRegionsWrapper(ImageReadParam, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader: Wrapper for the protected method computeRegions.
ConCat - Class in mdbtools.dbengine.functions
ConCat() - Constructor for class mdbtools.dbengine.functions.ConCat
concatenate(List<ImagePlus>) - Method in class loci.plugins.in.Concatenator: Concatenates the list of images as appropriate.
concatenateBox - Variable in class loci.plugins.in.MainDialog
Concatenator - Class in loci.plugins.in: Logic for concatenating multiple images together.
Concatenator() - Constructor for class loci.plugins.in.Concatenator
ConcatPtg - Class in loci.poi.hssf.record.formula
ConcatPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ConcatPtg
ConcatPtg() - Constructor for class loci.poi.hssf.record.formula.ConcatPtg
CONCURRENCY_PROP_NAME - Static variable in class jj2000.j2k.util.ThreadPool: The name of the property that sets the concurrency level: jj2000.j2k.util.ThreadPool.concurrency
Condition - Class in mdbtools.dbengine.sql
Condition() - Constructor for class mdbtools.dbengine.sql.Condition
configTree - Static variable in class loci.tests.testng.FormatReaderTest: Configuration tree structure containing dataset metadata.
configTree - Static variable in class loci.tests.testng.FormatWriterTest: Configuration tree structure containing dataset metadata.
Configuration - Class in loci.tests.testng: Source code: Trac, Gitweb
Configuration(String, String) - Constructor for class loci.tests.testng.Configuration
Configuration(IFormatReader, String) - Constructor for class loci.tests.testng.Configuration
ConfigurationTree - Class in loci.tests.testng: Stores configuration data about files in a directory structure.
ConfigurationTree(String) - Constructor for class loci.tests.testng.ConfigurationTree: Creates a new configuration tree rooted at the given directory in the file system.
ConfigWindow - Class in loci.plugins.config: A window for managing configuration of the Bio-Formats plugins.
ConfigWindow() - Constructor for class loci.plugins.config.ConfigWindow
Constants - Class in loci.common: Constants that are used within many classes in loci.common.
Constants() - Constructor for class loci.common.Constants
Constants - Class in loci.poi.hpsf: Defines constants of general use.
Constants() - Constructor for class loci.poi.hpsf.Constants
Constants - Class in mdbtools.libmdb: copied from mdbtools.h
Constants() - Constructor for class mdbtools.libmdb.Constants
construct(int, List) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
constructDialog() - Method in class loci.plugins.in.ColorDialog
constructDialog() - Method in class loci.plugins.in.CropDialog
constructDialog() - Method in class loci.plugins.in.FilePatternDialog
constructDialog() - Method in class loci.plugins.in.IdDialog
constructDialog() - Method in class loci.plugins.in.ImporterDialog
constructDialog() - Method in class loci.plugins.in.LocationDialog
constructDialog() - Method in class loci.plugins.in.MainDialog
constructDialog() - Method in class loci.plugins.in.MemoryDialog
constructDialog() - Method in class loci.plugins.in.RangeDialog
constructDialog() - Method in class loci.plugins.in.SeriesDialog
constructDialog() - Method in class loci.plugins.in.SwapDialog
constructDialog() - Method in class loci.plugins.in.UpgradeDialog
constructImage(int, int, int, int, boolean, boolean, DataBuffer) - Static method in class loci.formats.gui.AWTImageTools: Creates an image with the given DataBuffer.
constructImage(int, int, int, int, boolean, boolean, DataBuffer, ColorModel) - Static method in class loci.formats.gui.AWTImageTools: Creates an image with the given DataBuffer.
constructLoader() - Static method in class loci.formats.gui.LegacyQTTools
contains(int, short) - Method in class loci.poi.hssf.util.Region: Answers: "is the row/column inside this range?"
contains(double) - Method in class loci.poi.util.DoubleList: Returns true if this list contains the specified element.
contains(int) - Method in class loci.poi.util.IntList: Returns true if this list contains the specified element.
contains(short) - Method in class loci.poi.util.ShortList: Returns true if this list contains the specified element.
containsAll(DoubleList) - Method in class loci.poi.util.DoubleList: Returns true if this list contains all of the elements of the specified collection.
containsAll(IntList) - Method in class loci.poi.util.IntList: Returns true if this list contains all of the elements of the specified collection.
containsAll(ShortList) - Method in class loci.poi.util.ShortList: Returns true if this list contains all of the elements of the specified collection.
containsKey(Object) - Method in class loci.poi.util.BinaryTree: Returns true if this map contains a mapping for the specified key.
containsPoint(int, int) - Method in class loci.common.Region: Returns true if the point specified by the given X and Y coordinates is contained within this region.
containsTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory: Determines whether a TIFF field with the given tag number is contained in this directory.
containsValue(int[], int) - Static method in class loci.common.DataTools: Returns true if the given value is contained in the given array.
containsValue(Object) - Method in class loci.poi.util.BinaryTree: Returns true if this map maps one or more keys to the specified value.
CONTIGUOUS_CODESTREAM_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
ContinueRecord - Class in loci.poi.hssf.record: Title: Continue Record - Helper class used primarily for SST Records
ContinueRecord() - Constructor for class loci.poi.hssf.record.ContinueRecord: default constructor
ContinueRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ContinueRecord: Main constructor -- kinda dummy because we don't validate or fill fields
CONTRAST - Static variable in class loci.formats.tiff.IFD
CONTRAST_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "Contrast" tag.
CONTRAST_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "Contrast" tag.
CONTRAST_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "Contrast" tag.
ContrastMethod - Enum in ome.xml.model.enums
ContrastMethodEnumHandler - Class in ome.xml.model.enums.handlers: Enumeration handler for ContrastMethod.
ContrastMethodEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ContrastMethodEnumHandler
ControlPtg - Class in loci.poi.hssf.record.formula
ControlPtg() - Constructor for class loci.poi.hssf.record.formula.ControlPtg
ConversionTest - Class in loci.tests.testng
ConversionTest() - Constructor for class loci.tests.testng.ConversionTest
convert(String, String) - Static method in class loci.formats.FormatTools: Convenience method for converting the specified input file to the specified output file.
convert(IFormatReader, IFormatWriter, String) - Static method in class loci.formats.FormatTools: Convenience method for writing all of the images and metadata obtained from the specified IFormatReader into the specified IFormatWriter.
convert(long, RandomAccessInputStream, int, int, int) - Static method in class loci.poi.poifs.storage.DocumentBlock: convert a single long array into an array of DocumentBlock instances
convert(byte[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock: convert a single long array into an array of SmallDocumentBlock instances
convert(BlockWritable[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock: Factory for creating SmallDocumentBlocks from DocumentBlocks
ConvertAnchor - Class in loci.poi.hssf.model: $Id: ConvertAnchor.java 562536 2007-08-03 18:09:41Z yegor $
ConvertAnchor() - Constructor for class loci.poi.hssf.model.ConvertAnchor
convertDate(long, int) - Static method in class loci.common.DateTools: Converts the given timestamp into an ISO8601 date.
convertDate(long, int, String) - Static method in class loci.common.DateTools: Converts the given timestamp into a date string with the given format.
convertDate(long, int, String, boolean) - Static method in class loci.common.DateTools: Converts the given timestamp into a date string with the given format.
convertFactor - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData: The value by which the absolute value of the data has to be divided in order to get the real absolute value.
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter: Creates a default image metadata object and merges in the supplied metadata.
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
convertMetadata(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter: Copies information from a metadata retrieval object (source) into a metadata store (destination).
convertMetadata(String, MetadataStore) - Method in interface loci.formats.services.OMEXMLService: Converts information from an OME-XML string (source) into a metadata store (destination).
convertMetadata(MetadataRetrieve, MetadataStore) - Method in interface loci.formats.services.OMEXMLService: Copies information from a metadata retrieval object (source) into a metadata store (destination).
convertMetadata(String, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
convertMetadata(MetadataRetrieve, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
convertObjectToString(Object) - Static method in class com.sun.media.imageioimpl.common.ImageUtil: Converts the provided object to String
convertRenderedImage(RenderedImage) - Static method in class loci.formats.gui.AWTImageTools: Converts a java.awt.image.RenderedImage into a java.awt.image.BufferedImage.
convertSharedFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord: Creates a non shared formula from the shared formula counter part
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter: Creates a default stream metadata object and merges in the supplied metadata.
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
convertToByte(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
convertToExpMantissa(float) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer: Converts the floating point value to its exponent-mantissa representation.
convertToFloat() - Method in class loci.plugins.util.RecordedImageProcessor
convertToRGB() - Method in class loci.plugins.util.RecordedImageProcessor
convertToShort(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
convolve(float[], int, int) - Method in class loci.plugins.util.RecordedImageProcessor
convolve3x3(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
coordinates - Variable in class loci.formats.in.BaseZeissReader
CoordInfo - Class in jj2000.j2k.codestream: This class is used to store the coordinates of objects such as code-blocks or precincts.
CoordInfo(int, int, int, int) - Constructor for class jj2000.j2k.codestream.CoordInfo: Constructor.
CoordInfo() - Constructor for class jj2000.j2k.codestream.CoordInfo: Empty contructor
copy(byte[], int, int, byte[], int) - Static method in class loci.poi.hpsf.Util: Copies a part of a byte array into another byte array.
copy(byte[], int, int) - Static method in class loci.poi.hpsf.Util: Copies bytes from a source byte array into a new byte array.
copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
copyBinDataList() - Method in class ome.xml.model.Mask
copyBinDataList() - Method in class ome.xml.model.Pixels
copyBits(ImageProcessor, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
copyBooleanAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyChannelList() - Method in class ome.xml.model.Pixels
copyCommentAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage: Copies an arbitrary rectangular region of the RenderedImage into a caller-supplied WritableRaster.
copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
copyDatasetList() - Method in class ome.xml.model.OME
copyDetectorList() - Method in class ome.xml.model.Instrument
copyDichroicList() - Method in class ome.xml.model.Instrument
copyDoubleAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyExperimenterGroupList() - Method in class ome.xml.model.OME
copyExperimenterList() - Method in class ome.xml.model.OME
copyExperimentList() - Method in class ome.xml.model.OME
copyFileAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyFilterList() - Method in class ome.xml.model.Instrument
copyFilterSetList() - Method in class ome.xml.model.Instrument
copyImageList() - Method in class ome.xml.model.OME
copyInstrumentList() - Method in class ome.xml.model.OME
copyInt(byte[], int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box: Copies that four bytes of an integer into the byte array.
copyLightSourceList() - Method in class ome.xml.model.Instrument
copyLightSourceSettingsList() - Method in class ome.xml.model.MicrobeamManipulation
copyLinkedAnnotationList() - Method in class ome.xml.model.Annotation
copyLinkedAnnotationList() - Method in class ome.xml.model.Channel
copyLinkedAnnotationList() - Method in class ome.xml.model.Dataset
copyLinkedAnnotationList() - Method in class ome.xml.model.Experimenter
copyLinkedAnnotationList() - Method in class ome.xml.model.ExperimenterGroup
copyLinkedAnnotationList() - Method in class ome.xml.model.Image
copyLinkedAnnotationList() - Method in class ome.xml.model.Pixels
copyLinkedAnnotationList() - Method in class ome.xml.model.Plane
copyLinkedAnnotationList() - Method in class ome.xml.model.Plate
copyLinkedAnnotationList() - Method in class ome.xml.model.PlateAcquisition
copyLinkedAnnotationList() - Method in class ome.xml.model.Project
copyLinkedAnnotationList() - Method in class ome.xml.model.Reagent
copyLinkedAnnotationList() - Method in class ome.xml.model.ROI
copyLinkedAnnotationList() - Method in class ome.xml.model.Screen
copyLinkedAnnotationList() - Method in class ome.xml.model.Well
copyLinkedAnnotationList() - Method in class ome.xml.model.WellSample
copyLinkedChannelList() - Method in class ome.xml.model.Annotation
copyLinkedChannelList() - Method in class ome.xml.model.FilterSet
copyLinkedDatasetList() - Method in class ome.xml.model.Annotation
copyLinkedDatasetList() - Method in class ome.xml.model.Experimenter
copyLinkedDatasetList() - Method in class ome.xml.model.ExperimenterGroup
copyLinkedDatasetList() - Method in class ome.xml.model.Image
copyLinkedDatasetList() - Method in class ome.xml.model.Project
copyLinkedEmissionFilterList() - Method in class ome.xml.model.FilterSet
copyLinkedEmissionFilterList() - Method in class ome.xml.model.LightPath
copyLinkedExcitationFilterList() - Method in class ome.xml.model.FilterSet
copyLinkedExcitationFilterList() - Method in class ome.xml.model.LightPath
copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Annotation
copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Experimenter
copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Leader
copyLinkedExperimenterList() - Method in class ome.xml.model.Annotation
copyLinkedExperimenterList() - Method in class ome.xml.model.ExperimenterGroup
copyLinkedExperimentList() - Method in class ome.xml.model.Experimenter
copyLinkedFilterSetEmissionFilterList() - Method in class ome.xml.model.Filter
copyLinkedFilterSetExcitationFilterList() - Method in class ome.xml.model.Filter
copyLinkedFilterSetList() - Method in class ome.xml.model.Dichroic
copyLinkedImageList() - Method in class ome.xml.model.Annotation
copyLinkedImageList() - Method in class ome.xml.model.Dataset
copyLinkedImageList() - Method in class ome.xml.model.Experiment
copyLinkedImageList() - Method in class ome.xml.model.Experimenter
copyLinkedImageList() - Method in class ome.xml.model.ExperimenterGroup
copyLinkedImageList() - Method in class ome.xml.model.Instrument
copyLinkedImageList() - Method in class ome.xml.model.MicrobeamManipulation
copyLinkedImageList() - Method in class ome.xml.model.ROI
copyLinkedLaserList() - Method in class ome.xml.model.Pump
copyLinkedLeaderList() - Method in class ome.xml.model.ExperimenterGroup
copyLinkedLightPathEmissionFilterList() - Method in class ome.xml.model.Filter
copyLinkedLightPathExcitationFilterList() - Method in class ome.xml.model.Filter
copyLinkedLightPathList() - Method in class ome.xml.model.Dichroic
copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Experimenter
copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Image
copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.ROI
copyLinkedPixelsList() - Method in class ome.xml.model.Annotation
copyLinkedPlaneList() - Method in class ome.xml.model.Annotation
copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.Annotation
copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.WellSample
copyLinkedPlateList() - Method in class ome.xml.model.Annotation
copyLinkedPlateList() - Method in class ome.xml.model.Screen
copyLinkedProjectList() - Method in class ome.xml.model.Annotation
copyLinkedProjectList() - Method in class ome.xml.model.Dataset
copyLinkedProjectList() - Method in class ome.xml.model.Experimenter
copyLinkedProjectList() - Method in class ome.xml.model.ExperimenterGroup
copyLinkedReagentList() - Method in class ome.xml.model.Annotation
copyLinkedROIList() - Method in class ome.xml.model.Annotation
copyLinkedROIList() - Method in class ome.xml.model.Image
copyLinkedROIList() - Method in class ome.xml.model.MicrobeamManipulation
copyLinkedScreenList() - Method in class ome.xml.model.Annotation
copyLinkedScreenList() - Method in class ome.xml.model.Plate
copyLinkedWellList() - Method in class ome.xml.model.Annotation
copyLinkedWellList() - Method in class ome.xml.model.Reagent
copyLinkedWellSampleList() - Method in class ome.xml.model.Annotation
copyLinkedWellSampleList() - Method in class ome.xml.model.Image
copyLinkedWellSampleList() - Method in class ome.xml.model.PlateAcquisition
copyListAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyLongAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyMicrobeamManipulationList() - Method in class ome.xml.model.Experiment
copyNodes(POIFSFileSystem, POIFSFileSystem, List) - Method in class loci.poi.POIDocument: Copies nodes from one POIFS to the other minus the excepts
copyObjectiveList() - Method in class ome.xml.model.Instrument
copyPlaneList() - Method in class ome.xml.model.Pixels
copyPlateAcquisitionList() - Method in class ome.xml.model.Plate
copyPlateList() - Method in class ome.xml.model.OME
copyProjectList() - Method in class ome.xml.model.OME
copyReagentList() - Method in class ome.xml.model.Screen
copyright - Static variable in class jj2000.j2k.JJ2KInfo: The copyright message string.
COPYRIGHT - Static variable in class loci.formats.tiff.IFD
copyROIList() - Method in class ome.xml.model.OME
copyScaled(BufferedImage, BufferedImage, Object) - Static method in class loci.formats.gui.AWTImageTools: Copies the source image into the target, applying scaling.
copyScreenList() - Method in class ome.xml.model.OME
copyShapeList() - Method in class ome.xml.model.Union
copyTagAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyTermAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyTiffDataList() - Method in class ome.xml.model.Pixels
copyTimestampAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
copyWellList() - Method in class ome.xml.model.Plate
copyWellSampleList() - Method in class ome.xml.model.Well
copyXMLAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
core - Variable in class loci.formats.FormatReader: Core metadata values.
coreIndex - Variable in class loci.formats.FormatReader: The number of the current series.
coreIndexToSeries(int) - Method in class loci.formats.FileStitcher
coreIndexToSeries(int) - Method in class loci.formats.FormatReader
coreIndexToSeries(int) - Method in interface loci.formats.IFormatReader: Returns the series corresponding to the specified core index.
coreIndexToSeries(int) - Method in class loci.formats.ImageReader
coreIndexToSeries(int) - Method in class loci.formats.ReaderWrapper
CoreMetadata - Class in loci.formats: Encompasses core metadata values.
CoreMetadata() - Constructor for class loci.formats.CoreMetadata
CoreMetadata(IFormatReader, int) - Constructor for class loci.formats.CoreMetadata
CoreMetadata(CoreMetadata) - Constructor for class loci.formats.CoreMetadata
Correction - Enum in ome.xml.model.enums
CorrectionEnumHandler - Class in ome.xml.model.enums.handlers: Enumeration handler for Correction.
CorrectionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CorrectionEnumHandler
CorruptedCodestreamException - Exception in jj2000.j2k.codestream: Thsi exception is thrown whenever an illegal value is read from a bit stream.
CorruptedCodestreamException() - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException: Constructs a new CorruptedCodestreamException exception with no detail message.
CorruptedCodestreamException(String) - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException: Constructs a new CorruptedCodestreamException exception with the specified detail message.
cortime - Variable in class loci.formats.in.SDTInfo: Correlation time [ms].
COUNT - Static variable in class loci.poi.hssf.record.FnGroupCountRecord: suggested default (14 dec)
Count - Class in mdbtools.dbengine.functions
Count() - Constructor for class mdbtools.dbengine.functions.Count
countBlocks() - Method in interface loci.poi.poifs.filesystem.BATManaged: Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument: Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.property.PropertyTable: Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter: Return the number of BigBlock's this instance uses
countBlocks() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter: Return the number of BigBlock's this instance uses
countImages() - Method in class loci.formats.in.BaseZeissReader
countImages() - Method in class loci.formats.in.ZeissTIFFReader
countImages() - Method in class loci.formats.in.ZeissZVIReader
countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch: Total count of all children and their children's children.
countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShape: Count of all children and their childrens children.
countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup: Count of all children and their childrens children.
CountryRecord - Class in loci.poi.hssf.record: Title: Country Record (aka WIN.INI country)
CountryRecord() - Constructor for class loci.poi.hssf.record.CountryRecord
CountryRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CountryRecord: Constructs a CountryRecord and sets its fields appropriately
CP_037 - Static variable in class loci.poi.hpsf.Constants: Codepage 037, a special case
CP_EUC_JP - Static variable in class loci.poi.hpsf.Constants: Codepage for EUC-JP
CP_EUC_KR - Static variable in class loci.poi.hpsf.Constants: Codepage for EUC-KR
CP_GB18030 - Static variable in class loci.poi.hpsf.Constants: Codepage for GB18030
CP_GB2312 - Static variable in class loci.poi.hpsf.Constants: Codepage for GB2312
CP_GBK - Static variable in class loci.poi.hpsf.Constants: Codepage for GBK, aka MS936
CP_ISO_2022_JP1 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-2022-JP
CP_ISO_2022_JP2 - Static variable in class loci.poi.hpsf.Constants: Another codepage for ISO-2022-JP
CP_ISO_2022_JP3 - Static variable in class loci.poi.hpsf.Constants: Yet another codepage for ISO-2022-JP
CP_ISO_2022_KR - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-2022-KR
CP_ISO_8859_1 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-1
CP_ISO_8859_2 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-2
CP_ISO_8859_3 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-3
CP_ISO_8859_4 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-4
CP_ISO_8859_5 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-5
CP_ISO_8859_6 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-6
CP_ISO_8859_7 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-7
CP_ISO_8859_8 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-8
CP_ISO_8859_9 - Static variable in class loci.poi.hpsf.Constants: Codepage for ISO-8859-9
CP_JOHAB - Static variable in class loci.poi.hpsf.Constants: Codepage for Johab
CP_KOI8_R - Static variable in class loci.poi.hpsf.Constants: Codepage for KOI8-R
CP_MAC_ARABIC - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Arabic (Java: MacArabic)
CP_MAC_CENTRAL_EUROPE - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Central Europe (Latin-2) (Java: MacCentralEurope)
CP_MAC_CHINESE_SIMPLE - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Chinese Simplified (Java: unknown - use EUC_CN, ISO2022_CN_GB, MS936 or cp935)
CP_MAC_CHINESE_TRADITIONAL - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Chinese Traditional (Java: unknown - use Big5, MS950, or cp937)
CP_MAC_CROATIAN - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Croatian (Java: MacCroatian)
CP_MAC_CYRILLIC - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Cyrillic (Java: MacCyrillic)
CP_MAC_GREEK - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Greek (Java: MacGreek)
CP_MAC_HEBREW - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Hebrew (Java: MacHebrew)
CP_MAC_ICELAND - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Iceland (Java: MacIceland)
CP_MAC_JAPAN - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Japan (Java: unknown - use SJIS, cp942 or cp943)
CP_MAC_KOREAN - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Korean (Java: unknown - use EUC_KR or cp949)
CP_MAC_ROMAN - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Roman (Java: MacRoman)
CP_MAC_ROMANIA - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Romanian (Java: MacRomania)
CP_MAC_THAI - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Thai (Java: MacThai)
CP_MAC_TURKISH - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Turkish (Java: MacTurkish)
CP_MAC_UKRAINE - Static variable in class loci.poi.hpsf.Constants: Codepage for Macintosh Ukrainian (Java: MacUkraine)
CP_MS949 - Static variable in class loci.poi.hpsf.Constants: Codepage for MS949
CP_SJIS - Static variable in class loci.poi.hpsf.Constants: Codepage for SJIS
CP_UNICODE - Static variable in class loci.poi.hpsf.Constants: Codepage for Unicode
CP_US_ACSII - Static variable in class loci.poi.hpsf.Constants: Codepage for US-ASCII
CP_US_ASCII2 - Static variable in class loci.poi.hpsf.Constants: Another codepage for US-ASCII
CP_UTF16 - Static variable in class loci.poi.hpsf.Constants: Codepage for UTF-16
CP_UTF16_BE - Static variable in class loci.poi.hpsf.Constants: Codepage for UTF-16 big-endian
CP_UTF8 - Static variable in class loci.poi.hpsf.Constants: Codepage for UTF-8
CP_WINDOWS_1250 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1250
CP_WINDOWS_1251 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1251
CP_WINDOWS_1252 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1252
CP_WINDOWS_1253 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1253
CP_WINDOWS_1254 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1254
CP_WINDOWS_1255 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1255
CP_WINDOWS_1256 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1256
CP_WINDOWS_1257 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1257
CP_WINDOWS_1258 - Static variable in class loci.poi.hpsf.Constants: Codepage for Windows 1258
cqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
CRC - Class in loci.common: A simple class to hold and calculate the CRC for sanity checking the data.
CRC() - Constructor for class loci.common.CRC
CRC_32_TABLE - Static variable in class loci.common.CRC
create(InputStream) - Static method in class loci.poi.hpsf.PropertySetFactory: Creates the most specific PropertySet from an InputStream.
create() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
create(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
create() - Method in class loci.poi.hssf.usermodel.EscherGraphics
create() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
create(String, Properties) - Static method in class loci.poi.hssf.usermodel.FontDetails: Create an instance of FontDetails by loading them from the provided property object.
createAggregate(List, int, DrawingManager2) - Static method in class loci.poi.hssf.record.EscherAggregate: Collapses the drawing records into an aggregate.
createAnchor(HSSFAnchor) - Method in class loci.poi.hssf.model.AbstractShape: Creates an escher anchor record from a HSSFAnchor.
createAnchor(HSSFAnchor) - Static method in class loci.poi.hssf.model.ConvertAnchor
createArrayForType(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField: Creates an array appropriate for the indicated data type.
createBackup() - Method in class loci.poi.hssf.model.Workbook: creates the Backup record with backup set to 0.
createBATBlocks(int[], int) - Static method in class loci.poi.poifs.storage.BATBlock: Create an array of BATBlocks from an array of int block allocation table entries
createBlank(int, short) - Method in class loci.poi.hssf.model.Sheet: create a BLANK record (does not add it to the records contained in this sheet)
createBlocks(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter: Create the BATBlocks we need
createBOF() - Method in class loci.poi.hssf.model.Sheet: creates the BOF record
createBOF() - Method in class loci.poi.hssf.model.Workbook: creates the BOF record
createBookBool() - Method in class loci.poi.hssf.model.Workbook: creates the BookBool record with saveLinkValues set to 0.
createBoundSheet(int) - Method in class loci.poi.hssf.model.Workbook: create a "bound sheet" or "bundlesheet" (depending who you ask) record Always sets the sheet's bof to 0.
createBox(int, Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box: Creates a Box object with the provided type based on the provided Node object based on reflection.
createBuilder() - Static method in class loci.common.xml.XMLTools: Creates a new DocumentBuilder via DocumentBuilderFactory or logs and throws a RuntimeException.
createBuiltInName(byte, int) - Method in class loci.poi.hssf.model.Workbook: Generates a NameRecord to represent a built-in region
createCalcCount() - Method in class loci.poi.hssf.model.Sheet: creates the CalcCount record and sets it to 0x64 (default number of iterations)
createCalcMode() - Method in class loci.poi.hssf.model.Sheet: creates the CalcMode record and sets it to 1 (automatic formula caculation)
createCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow: Use this to create new cells within the row and return it.
createCell(short, int) - Method in class loci.poi.hssf.usermodel.HSSFRow: Use this to create new cells within the row and return it.
createCellFromRecord(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFRow: create a high level HSSFCell object from an existing low level record.
createCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: create a new Cell style and add it to the workbook's style table
createCellXF() - Method in class loci.poi.hssf.model.Workbook: creates a new Cell-type Extneded Format Record and adds it to the end of ExtendedFormatRecords collection
createCodepage() - Method in class loci.poi.hssf.model.Workbook: creates the Codepage record containing the constant stored in CODEPAGE
createColInfo() - Method in class loci.poi.hssf.model.Sheet: creates the ColumnInfo Record and sets it to a default column/width
createColInfo() - Static method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate: creates the ColumnInfo Record and sets it to a default column/width
createColorModel(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil: Creates a ColorModel that may be used with the specified SampleModel.
createColorModel(ColorSpace, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
createComment(HSSFAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch: Constructs a cell comment.
createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.Index16ColorModel
createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.SignedColorModel
createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel
createCountry() - Method in class loci.poi.hssf.model.Workbook: Creates the Country record with the default country set to 1 and current country set to 7 in case of russian locale ("ru_RU") and 1 otherwise
created - Variable in class loci.formats.out.QTWriter: Time the file was created.
createData() - Method in class loci.tests.IOTester
createDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: Returns the instance of HSSFDataFormat for this workbook.
createDateWindow1904() - Method in class loci.poi.hssf.model.Workbook: creates the DateWindow1904 record with windowing set to 0.
createDefaultColWidth() - Method in class loci.poi.hssf.model.Sheet: creates the DefaultColWidth Record and sets it to 8
createDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet: creates the DefaultRowHeight Record and sets its options to 0 and rowheight to 0xff
createDelta() - Method in class loci.poi.hssf.model.Sheet: creates the Delta record and sets it to 0.0010 (default accuracy)
createDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder: Returns the dequantizer parameters.
createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager
createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager2
createDimensions() - Method in class loci.poi.hssf.model.Sheet: creates the Dimensions Record and sets it to bogus values (you should set this yourself or let the high level API do it for you)
createDirectory(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry: create a new DirectoryEntry
createDirectory(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode: create a new DirectoryEntry
createDirectory(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem: create a new DirectoryEntry in the root directory
createDocument() - Static method in class loci.common.xml.XMLTools: Calls DocumentBuilder.newDocument() on a new builder.
createDocument(String, RandomAccessInputStream) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry: create a new DocumentEntry
createDocument(String, int, POIFSWriterListener) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry: create a new DocumentEntry; the data will be provided later
createDocument(String, RandomAccessInputStream) - Method in class loci.poi.poifs.filesystem.DirectoryNode: create a new DocumentEntry
createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.DirectoryNode: create a new DocumentEntry; the data will be provided later
createDocument(RandomAccessInputStream, String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem: Create a new document to be added to the root directory
createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem: create a new DocumentEntry in the root entry; the data will be provided later
createDocumentInputStream(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem: open a document in the root entry's list of entries
createDrawingGroup() - Method in class loci.poi.hssf.model.Workbook: Creates a drawing group record.
createDrawingPatriarch() - Method in class loci.poi.hssf.usermodel.HSSFSheet: Creates the toplevel drawing patriarch.
createDSF() - Method in class loci.poi.hssf.model.Workbook: creates the DSF record containing a 0 since HSSF can't even create Dual Stream Files
createEntropyDecoder(CodedCBlkDataSrcDec, J2KImageReadParamJava) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder: Creates and returns the entropy decoder corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.
createEOF() - Method in class loci.poi.hssf.model.Sheet: creates the EOF record
createEOF() - Method in class loci.poi.hssf.model.Workbook: creates the EOF record
createExtendedFormat(int) - Method in class loci.poi.hssf.model.Workbook: Creates an ExtendedFormatRecord object
createExtendedFormat() - Method in class loci.poi.hssf.model.Workbook: creates an default cell type ExtendedFormatRecord object.
createExtendedSST() - Method in class loci.poi.hssf.model.Workbook: Creates the ExtendedSST record with numstrings per bucket set to 0x8.
createExternSheet() - Method in class loci.poi.hssf.model.Workbook: creates a new extern sheet record
createExtSSTRecord(int) - Method in class loci.poi.hssf.record.SSTRecord: Creates an extended string record based on the current contents of the current SST record.
createFnGroupCount() - Method in class loci.poi.hssf.model.Workbook: creates the FnGroupCount record containing the Magic number constant of 14.
createFont() - Method in class loci.poi.hssf.model.Workbook: creates a Font record with the following magic values:
createFont() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: create a new Font and add it to the workbook's font table
createFooter() - Method in class loci.poi.hssf.model.Sheet: creates the Footer Record and sets it to nothing/0 length
createFormat(int) - Method in class loci.poi.hssf.model.Workbook: Creates a FormatRecord object
createFormat(String) - Method in class loci.poi.hssf.model.Workbook: Creates a FormatRecord, inserts it, and returns the index code.
createFormula(int, short, String) - Method in class loci.poi.hssf.model.Sheet: Attempts to parse the formula into PTGs and create a formula record DOES NOT WORK YET
createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.model.Sheet: Creates a split (freezepane).
createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet: Creates a split (freezepane).
createFreezePane(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet: Creates a split (freezepane).
createFromMetadata(IIOMetadata) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory: Creates a TIFFDirectory instance from the contents of an image metadata object.
createFromMetadataNode(TIFFTagSet, Node) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField: Creates a TIFFField from a TIFF native image metadata node.
createGridset() - Method in class loci.poi.hssf.model.Sheet: creates the Gridset record and sets it to true (user has mucked with the gridlines)
createGroup(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch: Creates a new group record stored under this patriarch.
createGroup(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup: Create another group under this group.
createGuts() - Method in class loci.poi.hssf.model.Sheet: creates the Guts record and sets leftrow/topcol guttter and rowlevelmax/collevelmax to 0
createHCenter() - Method in class loci.poi.hssf.model.Sheet: creates the HCenter Record and sets it to false (don't horizontally center)
createHeader() - Method in class loci.poi.hssf.model.Sheet: creates the Header Record and sets it to nothing/0 length
createHideObj() - Method in class loci.poi.hssf.model.Workbook: creates the HideObj record with hide object set to 0.
createImage(String, List<ImageProcessor>) - Static method in class loci.plugins.in.ImagePlusReader: Creates an ImagePlus from the given image processors.
createImage(String, ImageStack, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader: Creates an ImagePlus from the given image stack.
createImage() - Method in class loci.plugins.util.RecordedImageProcessor
createIndex() - Method in class loci.poi.hssf.model.Sheet: creates the Index record - not currently used
createIndexColorModel(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder: Creates an palette representing colors from given image img.
createIndexedImage(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder: Creates an image representing given image src using IndexColorModel.
createInputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
createInstance(RandomAccessIO, HeaderDecoder, J2KImageReadParamJava, DecoderSpecs, boolean, HeaderInfo) - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: Creates a bit stream reader of the correct type that works on the provided RandomAccessIO, with the special parameters from the parameter list.
createInstance(CBlkQuantDataSrcEnc, J2KImageWriteParamJava, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder: Creates a EntropyCoder object for the appropriate entropy coding parameters in the parameter list 'pl', and having 'src' as the source of quantized data.
createInstance(CodedCBlkDataSrcEnc, float, CodestreamWriter, J2KImageWriteParamJava) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator: Creates a PostCompRateAllocator object for the appropriate rate allocation parameters in the parameter list 'pl', having 'src' as the source of entropy coded data, 'rate' as the target bitrate and 'bw' as the bit stream writer object.
createInstance(CBlkWTDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.quantization.quantizer.Quantizer: Creates a Quantizer object for the appropriate type of quantization specified in the options in the parameter list 'pl', and having 'src' as the source of data to be quantized.
createInstance(Quantizer, J2KImageWriteParamJava) - Static method in class jj2000.j2k.roi.encoder.ROIScaler: Creates a ROIScaler object.
createInstance(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Static method in class jj2000.j2k.roi.ROIDeScaler: Creates a ROIDeScaler object.
createInstance(BlkImgDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT: Creates a ForwardWT object with the specified filters, and with other options specified in the parameter list 'pl'.
createInstance(CBlkWTDataSrcDec, DecoderSpecs) - Static method in class jj2000.j2k.wavelet.synthesis.InverseWT: Creates an InverseWT object that works on the data type of the source, with the special additional parameters from the parameter list.
createInstances() - Method in class loci.tests.testng.FormatReaderTestFactory
createInstances() - Method in class loci.tests.testng.FormatWriterTestFactory
createInterfaceEnd() - Method in class loci.poi.hssf.model.Workbook: creates the InterfaceEnd record
createInterfaceHdr() - Method in class loci.poi.hssf.model.Workbook: creates the InterfaceHdr record
createIteration() - Method in class loci.poi.hssf.model.Sheet: creates the Iteration record and sets it to false (don't iteratively calculate formulas)
createLabelSST(int, short, int) - Method in class loci.poi.hssf.model.Sheet: Create a LABELSST Record (does not add it to the records contained in this sheet)
createLogFile() - Static method in class loci.tests.testng.TestTools: Creates a new log file.
createLSID(String, int...) - Static method in class loci.formats.MetadataTools: Constructs an LSID, given the object type and indices.
createMergedCells() - Method in class loci.poi.hssf.model.Sheet
createMMS() - Method in class loci.poi.hssf.model.Workbook: creates an MMS record
createName() - Method in class loci.poi.hssf.model.Workbook: creates new name
createName() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: creates a new named range and add it to the model
createNewDocument() - Method in class ome.xml.meta.AbstractOMEXMLMetadata
createNewFile() - Method in class loci.common.Location: Creates a new empty file named by this Location's path name iff a file with this name does not already exist.
createNewFont() - Method in class loci.poi.hssf.model.Workbook: creates a new font record and adds it to the "font table".
createNumber(int, short, double) - Method in class loci.poi.hssf.model.Sheet: Create a NUMBER Record (does not add it to the records contained in this sheet)
createObjectProtect() - Method in class loci.poi.hssf.model.Sheet: creates an ObjectProtect record with protect set to false.
createOMEXMLMetadata() - Static method in class loci.formats.MetadataTools: Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.
createOMEXMLMetadata() - Method in interface loci.formats.services.OMEXMLService: Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.
createOMEXMLMetadata(String) - Method in interface loci.formats.services.OMEXMLService: Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.
createOMEXMLMetadata(String, String) - Method in interface loci.formats.services.OMEXMLService: Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.
createOMEXMLMetadata() - Method in class loci.formats.services.OMEXMLServiceImpl
createOMEXMLMetadata(String) - Method in class loci.formats.services.OMEXMLServiceImpl
createOMEXMLMetadata(String, String) - Method in class loci.formats.services.OMEXMLServiceImpl
createOMEXMLRoot(String) - Method in interface loci.formats.services.OMEXMLService: Constructs an OME root node.
createOMEXMLRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl
createOutputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
createPalette() - Method in class loci.poi.hssf.model.Workbook: Creates a palette record initialized to the default palette
createParsedExpressionTokens(short, RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg
createPassword() - Method in class loci.poi.hssf.model.Sheet: creates a Password record with password set to 00.
createPassword() - Method in class loci.poi.hssf.model.Workbook: creates the Password record with password set to 0.
createPasswordRev4() - Method in class loci.poi.hssf.model.Workbook: creates the PasswordRev4 record with password set to 0.
createPicture(HSSFClientAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch: Creates a picture.
createPicture(HSSFChildAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup: Creates a picture.
createPolygon(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch: Creates a polygon
createPolygon(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup: Creates a polygon
createPrecision() - Method in class loci.poi.hssf.model.Workbook: creates the Precision record with precision set to true.
createPrintGridlines() - Method in class loci.poi.hssf.model.Sheet: creates the PrintGridlines record and sets it to false (that makes for ugly sheets).
createPrintHeaders() - Method in class loci.poi.hssf.model.Sheet: creates the PrintHeaders record and sets it to false (we don't create headers yet so why print them)
createPrintSetup() - Method in class loci.poi.hssf.model.Sheet: creates the PrintSetup Record and sets it to defaults and marks it invalid
createProcessor(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
createProperties(byte[], int, short) - Method in class loci.poi.ddf.EscherPropertyFactory: Create new properties from a byte array.
createPropertyBlockArray(List, int) - Static method in class loci.poi.poifs.storage.PropertyBlock: Create an array of PropertyBlocks from an array of Property instances, creating empty Property instances to make up any shortfall
createProtect() - Method in class loci.poi.hssf.model.Sheet: creates a Protect record with protect set to false.
createProtect() - Method in class loci.poi.hssf.model.Workbook: creates the Protect record with protect set to false.
createProtectionRev4() - Method in class loci.poi.hssf.model.Workbook: creates the ProtectionRev4 record with protect set to false.
createPtg(RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg
createRawImage() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor: Creates a BufferedImage whose underlying data array will be suitable for holding the raw decoded output of the decodeRaw method.
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
createRecord(byte[], int) - Method in class loci.poi.ddf.DefaultEscherRecordFactory: Generates an escher record including the any children contained under that record.
createRecord(byte[], int) - Method in interface loci.poi.ddf.EscherRecordFactory: Create a new escher record from the data provided.
createRecord(RecordInputStream) - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory: create a record, if there are MUL records than multiple records are returned digested into the non-mul form.
createRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.RecordFactory: Deprecated.
createRecords(InputStream, boolean) - Static method in class loci.poi.hssf.dev.BiffViewer: Create an array of records from an input stream
createRecords(InputStream) - Static method in class loci.poi.hssf.record.RecordFactory: Deprecated.

Create an array of records from an input stream
createRefMode() - Method in class loci.poi.hssf.model.Sheet: creates the RefMode record and sets it to A1 Mode (default reference mode)
createRefreshAll() - Method in class loci.poi.hssf.model.Workbook: creates the RefreshAll record with refreshAll set to true.
createROIDeScaler(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder: Creates and returns the ROIDeScaler corresponding to the information read from the codestream header and with the special additional parameters from the parameter list.
createRoot() - Method in class ome.xml.meta.AggregateMetadata
createRoot() - Method in class ome.xml.meta.DummyMetadata
createRoot() - Method in class ome.xml.meta.FilterMetadata
createRoot() - Method in interface ome.xml.meta.MetadataStore
createRoot() - Method in class ome.xml.meta.OMEXMLMetadataImpl
createRow(int) - Method in class loci.poi.hssf.model.Sheet: Create a row record.
createRow(int) - Static method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate: Create a row record.
createRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet: Create a new row within the sheet and return the high level representation
createSaveRecalc() - Method in class loci.poi.hssf.model.Sheet: creates the SaveRecalc record and sets it to true (recalculate before saving)
createScenarioProtect() - Method in class loci.poi.hssf.model.Sheet: creates a ScenarioProtect record with protect set to false.
createSelection() - Method in class loci.poi.hssf.model.Sheet: Creates the Selection record and sets it to nothing selected
createShape(HSSFShape, int) - Static method in class loci.poi.hssf.model.AbstractShape: Create a new shape object used to create the escher records.
createShape(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup: Create a new simple shape under this group.
createSheet(List, int, int) - Static method in class loci.poi.hssf.model.Sheet: read support (offset used as starting point for search) for low level API.
createSheet(List, int) - Static method in class loci.poi.hssf.model.Sheet: read support (offset = 0) Same as createSheet(Record[] recs, int, int) only the record offset is assumed to be 0.
createSheet() - Static method in class loci.poi.hssf.model.Sheet: Creates a sheet with all the usual records minus values and the "index" record (not required).
createSheet() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.
createSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook: create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns the high level representation.
createSimpleShape(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch: Creates a simple shape.
createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.model.Sheet: Creates a split pane.
createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet: Creates a split pane.
createSST() - Method in class loci.poi.hssf.model.Workbook: Creates the SST record with no strings and the unique/num string set to 0
createStack(List<ImageProcessor>, List<String>, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader: Creates an image stack from the given image processors.
createStyle(int) - Method in class loci.poi.hssf.model.Workbook: Creates a StyleRecord object
createSubRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.SubRecord
createTabId() - Method in class loci.poi.hssf.model.Workbook: creates the TabId record containing an array of 0,1,2.
createTempFile(String, String) - Static method in class loci.poi.util.TempFile: Creates a temporary file.
createTextbox(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch: Constructs a textbox under the patriarch.
createTextbox(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup: Create a new textbox under this group.
createUseSelFS() - Method in class loci.poi.hssf.model.Workbook: Creates the UseSelFS object with the use natural language flag set to 0 (false)
createVCenter() - Method in class loci.poi.hssf.model.Sheet: creates the VCenter Record and sets it to false (don't horizontally center)
createWindowOne() - Method in class loci.poi.hssf.model.Workbook: creates the WindowOne record with the following magic values:
createWindowProtect() - Method in class loci.poi.hssf.model.Workbook: creates the WindowProtect record with protect set to false.
createWindowTwo() - Method in class loci.poi.hssf.model.Sheet: creates the WindowTwo Record and sets it to:
createWorkbook(List) - Static method in class loci.poi.hssf.model.Workbook: read support for low level API.
createWorkbook() - Static method in class loci.poi.hssf.model.Workbook: Creates an empty workbook object with three blank sheets and all the empty fields.
createWriteAccess() - Method in class loci.poi.hssf.model.Workbook: creates the WriteAccess record containing the logged in user's name
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
createWSBool() - Method in class loci.poi.hssf.model.Sheet: creates the WSBoolRecord and sets its values to defaults
createXBATBlocks(int[], int, int) - Static method in class loci.poi.poifs.storage.BATBlock: Create an array of XBATBlocks from an array of int block allocation table entries
crg - Variable in class jj2000.j2k.codestream.HeaderInfo: Reference to the CRG marker segment found in main header
CRG - Static variable in interface jj2000.j2k.codestream.Markers: Component registration (CRG): 0xFF63
CRG_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder: Flag bit for CRG marker segment found
crgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
crop() - Method in class loci.plugins.util.RecordedImageProcessor
cropBox - Variable in class loci.plugins.in.MainDialog
CropDialog - Class in loci.plugins.in: Bio-Formats Importer crop options dialog box.
CropDialog(ImportProcess) - Constructor for class loci.plugins.in.CropDialog: Creates a crop options dialog for the Bio-Formats Importer.
crossChan - Variable in class loci.formats.in.SDTInfo: Cross FCS routing channel number when chan = crossChan and mod == crossMod - Auto FCS otherwise - Cross FCS.
CrosshairStrategy - Class in loci.formats.cache: A crosshair strategy caches planes extending from the the current dimensional position along each individual axis, but not combinations of axes.
CrosshairStrategy(int[]) - Constructor for class loci.formats.cache.CrosshairStrategy: Constructs a crosshair strategy.
crossMod - Variable in class loci.formats.in.SDTInfo: Cross FCS module number.
crossMtResol - Variable in class loci.formats.in.SDTInfo: Macro time clock of cross FCS module in 0.1 ns units.
cs - Variable in class jj2000.j2k.entropy.Progression: Component index for the start of a progression
CS_2C - Static variable in class loci.formats.gui.TwoChannelColorSpace
CSB_APPROX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
CSB_ENUM_GREY - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
CSB_ENUM_SRGB - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
CSB_ENUM_YCC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
CSB_METH - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes: Colour Specification Box Fields
CSB_PREC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
cScroll - Variable in class loci.plugins.util.DataBrowser
csiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
cSlider - Variable in class loci.formats.gui.ImageViewer
cSliders - Variable in class loci.plugins.util.DataBrowser
cspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
css - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder: Causal stripes specifications
CSV_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
ctp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo: The cumulative number of truncation points
cts - Variable in class jj2000.j2k.decoder.DecoderSpecs: The component transformation specifications
ctX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: The current tile horizontal index
ctY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: The current tile vertical index
cTypes - Variable in class loci.formats.CoreMetadata: Deprecated.
use CoreMetadata.moduloC instead
culx - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: The horizontal coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.
culy - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent: The vertical coordinates of the upper-left corner of the active tile, with respect to the canvas origin, in the component hi-res grid, for each component.
cur_pg - Variable in class mdbtools.libmdb.MdbHandle
cur_pg_num - Variable in class mdbtools.libmdb.MdbTableDef
cur_phys_pg - Variable in class mdbtools.libmdb.MdbTableDef
cur_pos - Variable in class mdbtools.libmdb.MdbHandle
cur_row - Variable in class mdbtools.libmdb.MdbTableDef
cur_value_len - Variable in class mdbtools.libmdb.MdbColumn
cur_value_start - Variable in class mdbtools.libmdb.MdbColumn
curCycle - Variable in class loci.formats.in.SDTInfo: Current cycle (accumulation cycle in FLOW mode) - (if multi-cycle measurement).
curPage - Variable in class loci.formats.in.SDTInfo: Current measured page.
current - Variable in class loci.formats.ImageWriter: Current form index.
currentId - Variable in class loci.formats.FormatHandler: Name of current file.
currentId - Variable in class loci.formats.ImageWriter: Name of current file.
currentLength - Variable in class loci.poi.hssf.record.RecordInputStream
currentPos - Variable in class loci.formats.cache.Cache: Current dimensional position.
currentRow - Variable in class mdbtools.dbengine.MemoryData
currentSid - Variable in class loci.poi.hssf.record.RecordInputStream
currLevel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
currSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
curStep - Variable in class loci.formats.in.SDTInfo: Current step (if multi-step measurement).
curve - Variable in class loci.formats.codec.NikonCodecOptions
CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty
CUSTOM - Static variable in interface jj2000.j2k.wavelet.FilterTypes: User-defined filter: -1
CUSTOM_RENDERED - Static variable in class loci.formats.tiff.IFD
CUSTOM_RENDERED_CUSTOM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "CustomRendered" tag.
CUSTOM_RENDERED_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet: A value to be used with the "CustomRendered" tag.
CustomField - Interface in loci.poi.hssf.record
CustomProperties - Class in loci.poi.hpsf: Maintains the instances of CustomProperty that belong to a DocumentSummaryInformation.
CustomProperties() - Constructor for class loci.poi.hpsf.CustomProperties
CustomProperty - Class in loci.poi.hpsf: This class represents custum properties in the document summary information stream.
CustomProperty() - Constructor for class loci.poi.hpsf.CustomProperty: Creates an empty CustomProperty.
CustomProperty(Property) - Constructor for class loci.poi.hpsf.CustomProperty: Creates a CustomProperty without a name by copying the underlying Property' attributes.
CustomProperty(Property, String) - Constructor for class loci.poi.hpsf.CustomProperty: Creates a CustomProperty with a name.
cycles - Variable in class loci.formats.in.SDTInfo: Cycles (accumulation cycles in FLOW mode).





D

DAILY_BUILD - Static variable in class loci.formats.UpgradeChecker

Location of the JAR artifacts for Bio-Formats' daily build.

DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
data - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
 
data - Variable in class jj2000.j2k.entropy.CodedCBlk

The compressed data

data - Variable in class jj2000.j2k.image.DataBlkFloat

The array where the data is stored

data - Variable in class jj2000.j2k.image.DataBlkInt

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

The array where the data is stored

data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

The array where the data is stored

data - Variable in class loci.poi.hssf.record.RecordInputStream
 
Data - Interface in mdbtools.dbengine

Data represents a set of rows containing data

Data - Class in mdbtools.libmdb
 
Data() - Constructor for class mdbtools.libmdb.Data
 
DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For normal .sdt files (setup + data).

DATA_LABEL_PLACEMENT_ABOVE - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_AUTO - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_AXIS - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_BELOW - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_CHART_DEPENDENT - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_INSIDE - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_OUTSIDE - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_RIGHT - Static variable in class loci.poi.hssf.record.TextRecord
 
DATA_LABEL_PLACEMENT_USER_MOVED - Static variable in class loci.poi.hssf.record.TextRecord
 
DataBlk - Class in jj2000.j2k.image

This is a generic abstract class to store data from a block of an
 image.

DataBlk() - Constructor for class jj2000.j2k.image.DataBlk
 
DataBlkFloat - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for
 32 bit floating point data (float).

DataBlkFloat() - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with 0 dimensions and no data array
 (i.e.

DataBlkFloat(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkFloat

Creates a DataBlkFloat with the specified dimensions and
 position.

DataBlkFloat(DataBlkFloat) - Constructor for class jj2000.j2k.image.DataBlkFloat

Copy constructor.

DataBlkInt - Class in jj2000.j2k.image

This is an implementation of the DataBlk interface for
 signed 32 bit integral data.

DataBlkInt() - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with 0 dimensions and no data array
 (i.e.

DataBlkInt(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkInt

Creates a DataBlkInt with the specified dimensions and
 position.

DataBlkInt(DataBlkInt) - Constructor for class jj2000.j2k.image.DataBlkInt

Copy constructor.

dataBlockLength - Variable in class loci.formats.in.SDTInfo
 
dataBlockOffs - Variable in class loci.formats.in.SDTInfo

Offset of the first data block.

DataBrowser - Class in loci.plugins.util

Extension of StackWindow with additional UI trimmings for animation,
 virtual stack caching options, metadata, and general beautification.

DataBrowser(ImagePlus) - Constructor for class loci.plugins.util.DataBrowser
 
DataBrowser(ImagePlus, ImageCanvas, String[], int[]) - Constructor for class loci.plugins.util.DataBrowser
 
DataBrowser(ImagePlus, ImageCanvas, String[], int[], XMLWindow) - Constructor for class loci.plugins.util.DataBrowser
 
DataConverter - Class in loci.formats.gui

A utility for reorganizing and converting QuickTime movies,
 TIFF series and other 4D datasets.

DataConverter() - Constructor for class loci.formats.gui.DataConverter
 
DataEntryURLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a Data Entry URL Box of JPEG JP2
  file format.

DataEntryURLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its content data.

DataEntryURLBox(byte, byte[], String) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from its data elements.

DataEntryURLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Constructs a DataEntryURLBox from a Node.

DataFormatRecord - Class in loci.poi.hssf.record

The data format record is used to index into a series.

DataFormatRecord() - Constructor for class loci.poi.hssf.record.DataFormatRecord
 
DataFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DataFormatRecord

Constructs a DataFormat record and sets its fields appropriately.

dataOffs - Variable in class loci.formats.in.SDTInfo

Offset of the data block from the beginning of the file.

Dataset - Class in ome.xml.model
 
Dataset() - Constructor for class ome.xml.model.Dataset

Default constructor.

Dataset(Element, OMEModel) - Constructor for class ome.xml.model.Dataset

Constructs Dataset recursively from an XML DOM tree.

Dataset(Dataset) - Constructor for class ome.xml.model.Dataset

Copy constructor.

datasetDescription - Variable in class loci.formats.FormatReader

Short description of the structure of the dataset.

DatasetRef - Class in ome.xml.model
 
DatasetRef() - Constructor for class ome.xml.model.DatasetRef

Default constructor.

DatasetRef(Element, OMEModel) - Constructor for class ome.xml.model.DatasetRef

Constructs DatasetRef recursively from an XML DOM tree.

DatasetRef(DatasetRef) - Constructor for class ome.xml.model.DatasetRef

Copy constructor.

DataSource - Interface in mdbtools.dbengine

DataSource represents the data store.

DataTools - Class in loci.common

A utility class with convenience methods for
 reading, writing and decoding words.

DATATYPE_INT16 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_INT32 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_INT8 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_KEY - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_REAL32 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_REAL64 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_UINT16 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_UINT32 - Static variable in class loci.formats.in.LiFlimReader
 
DATATYPE_UINT8 - Static variable in class loci.formats.in.LiFlimReader
 
DATE - Static variable in class loci.formats.FormatTools

Date on which this release was built.

date - Variable in class loci.formats.in.SDTInfo

Date of creation.

date() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current date

date() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current date

DATE_FORMAT - Static variable in class loci.formats.in.DeltavisionReader
 
DATE_FORMAT - Static variable in class loci.formats.in.FV1000Reader
 
DATE_FORMAT - Static variable in class loci.formats.in.GelReader
 
DATE_FORMAT - Static variable in class loci.formats.in.IvisionReader
 
DATE_FORMAT - Static variable in class loci.formats.in.L2DReader
 
DATE_FORMAT - Static variable in class loci.formats.in.MicromanagerReader
 
DATE_FORMAT - Static variable in class loci.formats.in.PerkinElmerReader
 
DATE_FORMAT - Static variable in class loci.formats.in.TCSReader
 
DATE_FORMATS - Static variable in class loci.formats.in.BaseTiffReader
 
DATE_FORMATS - Static variable in class loci.formats.in.ICSReader
 
DATE_TIME - Static variable in class loci.formats.tiff.IFD
 
DATE_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD
 
DATE_TIME_FORMAT - Static variable in class loci.formats.in.GelReader
 
DATE_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD
 
dateToFileTime(Date) - Static method in class loci.poi.hpsf.Util

Converts a Date into a filetime.

DateTools - Class in loci.common

A utility class with convenience methods for working with dates.

DateWindow1904Record - Class in loci.poi.hssf.record

Title:        Date Window 1904 Flag record

DateWindow1904Record() - Constructor for class loci.poi.hssf.record.DateWindow1904Record
 
DateWindow1904Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.DateWindow1904Record

Constructs a DateWindow1904 record and sets its fields appropriately.

DatRecord - Class in loci.poi.hssf.record

The dat record is used to store options for the chart.

DatRecord() - Constructor for class loci.poi.hssf.record.DatRecord
 
DatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DatRecord

Constructs a Dat record and sets its fields appropriately.

db_passwd - Variable in class mdbtools.libmdb.MdbFile
 
DBCELL_CAPACITY - Static variable in class loci.poi.hssf.record.IndexRecord
 
DBCellRecord - Class in loci.poi.hssf.record

Title:        DBCell Record
 Description:  Used by Excel and other MS apps to quickly find rows in the sheets.

DBCellRecord() - Constructor for class loci.poi.hssf.record.DBCellRecord
 
DBCellRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DBCellRecord

Constructs a DBCellRecord and sets its fields appropriately

DC_OFFSET - Static variable in class jj2000.j2k.image.input.ImgReaderPGM

DC offset value used when reading image

deadTimeComp - Variable in class loci.formats.in.SDTInfo
 
debug(String) - Static method in class loci.plugins.BF
 
DEBUG - Static variable in class loci.poi.util.POILogger
 
DebugTools - Class in loci.common

A utility class with convenience methods for debugging.

DEC_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "component default" specified decomposition

DEC_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "main default" specified decomposition

DEC_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile and component specific" specified
        decomposition

DEC_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec

The identifier for "tile specific default" specified decomposition

DecLyrdCBlk - Class in jj2000.j2k.entropy.decoder

This class stores coded (compressed) code-blocks that are organized
 in layers.

DecLyrdCBlk() - Constructor for class jj2000.j2k.entropy.decoder.DecLyrdCBlk
 
decode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the input bit stream (located in the
 ImageInputStream stream, at offset
 offset, and continuing for byteCount
 bytes) into the output BufferedImage
 image.

decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
 
decode(byte[], int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
 
decode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
 
decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor
 
decode(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil
 
decode() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Convert raw data to escher records.

decodeDate(int) - Static method in class loci.formats.in.MetamorphReader

Converts a Julian date value into a human-readable string.

decodeNextScanline(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeNumber(int) - Static method in class loci.poi.hssf.util.RKUtil

Do the dirty work of decoding; made a private static method to
 facilitate testing the algorithm

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided byte
 array b, starting at the offset given by
 dstOffset.

decodeRaw(short[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided short
 array s, starting at the offset given by
 dstOffset.

decodeRaw(int[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided int
 array i, starting at the offset given by
 dstOffset.

decodeRaw(float[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Decodes the source data into the provided float
 array f, starting at the offset given by
 dstOffset.

decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor
 
decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
 
decodeRLE() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
DecoderSpecs - Class in jj2000.j2k.decoder

This class holds references to each module specifications used in the
 decoding chain.

DecoderSpecs(int, int) - Constructor for class jj2000.j2k.decoder.DecoderSpecs

Initialize all members with the given number of tiles and components.

decodeSymbol(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Arithmetically decodes one symbol from the bit stream with the given
 context and returns its decoded value.

decodeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

This function performs the arithmetic decoding.

decodeT4() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeT6() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
 
decodeTime(int) - Static method in class loci.formats.in.MetamorphReader

Converts a time value in milliseconds into a human-readable string.

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class com.luratech.lwf.lwfDecoder
 
decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int).

decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl
 
decodeToMemoryGray8(byte[], int, int, int) - Method in class com.luratech.lwf.lwfDecoder
 
decodeToMemoryGray8(byte[], int, int, int) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.decodeToMemoryGray8(byte[], int, int, int).

decodeToMemoryGray8(byte[], int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.Base64Codec
 
decompress(byte[]) - Method in class loci.formats.codec.BaseCodec
 
decompress(byte[][]) - Method in class loci.formats.codec.BaseCodec
 
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.BaseCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.BaseCodec
 
decompress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec

2D data block decoding default implementation.

decompress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(byte[][]) - Method in interface loci.formats.codec.Codec

Decompresses a block of data.

decompress(RandomAccessInputStream, CodecOptions) - Method in interface loci.formats.codec.Codec

Decompresses data from the given RandomAccessInputStream.

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec

The CodecOptions parameter must be an instance of
 HuffmanCodecOptions, and should have the following fields set:
   table
   bitsPerSample
   maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set:
 interleaved
 littleEndian

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec

The CodecOptions parameter should have the following fields set:
 interleaved
 littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEGCodec

The CodecOptions parameter should have the following fields set:
  interleaved
  littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec

The CodecOptions parameter should have the following fields set:
  interleaved
  littleEndian

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
 
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec

The CodecOptions parameter should have the following fields set:
  maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZOCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZWCodec

The CodecOptions parameter should have the following fields set:
  maxBytes

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MJPBCodec

The CodecOptions parameter must be an instance of MJPBCodecOptions,
 and should have the following fields set:
  interlaced
  width
  height
  bitsPerSample
  littleEndian
  interleaved

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSRLECodec

The CodecOptions parameter should have the following fields set:
  width
  height
  previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSVideoCodec

The CodecOptions parameter should have the following fields set:
  width
  height
  bitsPerSample
  previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.NikonCodec

The CodecOptions parameter must be an instance of
 NikonCodecOptions, and should have the following fields set:
  lossy
  vPredictor
  curve
  split
  bitsPerSample
  maxBytes
  width
  height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PackbitsCodec

The CodecOptions parameter should have the following fields set:
  maxBytes

decompress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
 
decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.QTRLECodec
 
decompress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec

The CodecOptions parameter should have the following fields set:
  width
  height
  bitsPerSample
  previousImage

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.RPZACodec

The CodecOptions parameter should have the following fields set:
  width
  height

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.TargaRLECodec

The CodecOptions parameter should have the following fields set:
  maxBytes
  CodecOptions.bitsPerSample

decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.ZlibCodec
 
decompress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Decodes a strip of data.

decompress(byte[], int, int) - Static method in class loci.poi.ddf.EscherBlipWMFRecord

Decompresses a byte array.

decSpec - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The decoder specifications

decSpec - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The decoder specifications

def - Variable in class jj2000.j2k.ModuleSpec

Default value for each tile-component

DEF_BUF_LEN - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter

The default buffer length, 1024 bytes

DEF_THREADS_NUM - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The default value for the property in THREADS_PROP_NAME: 0

default_backend - Variable in class mdbtools.libmdb.MdbFile
 
default_backend - Variable in class mdbtools.libmdb.MdbHandle
 
DEFAULT_BLOCK_SIZE - Static variable in class loci.common.NIOInputStream

Block size to use when searching through the stream.

DEFAULT_BLOCK_SIZE - Static variable in class loci.common.RandomAccessInputStream

Block size to use when searching through the stream.

DEFAULT_BUCKET_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTRecord
 
DEFAULT_BYTES_PER_STRIP - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
DEFAULT_CALLER - Static variable in class loci.formats.UpgradeChecker

Value of "bioformats.caller" for Bio-Formats utilities.

DEFAULT_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Default character set.

DEFAULT_DIMENSION_ORDER - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_DISPLAY_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
DEFAULT_HEADER - Static variable in class loci.common.IniTable

Default header name when no header is available.

DEFAULT_MINIMUM_ELAPSED - Static variable in class loci.formats.Memoizer

Default value for Memoizer.minimumElapsed if none is provided in the
 constructor.

DEFAULT_PIXEL_TYPE - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_RANGE - Static variable in class loci.formats.cache.CacheStrategy

Default cache range.

DEFAULT_RGB_CHANNEL_COUNT - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_C - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_T - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_X - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_Y - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_SIZE_Z - Static variable in class loci.formats.in.FakeReader
 
DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.DocumentSummaryInformation

The document name a document summary information stream
 usually has in a POIFS filesystem.

DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.SummaryInformation

The document name a summary information stream usually has in a POIFS
 filesystem.

DEFAULT_VALUE - Static variable in class loci.poi.hssf.record.DeltaRecord
 
defaultBufferSize - Static variable in class loci.common.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O.

defaultcolwidth - Variable in class loci.poi.hssf.model.Sheet
 
DefaultColWidthRecord - Class in loci.poi.hssf.record

Title:        Default Column Width Record

DefaultColWidthRecord() - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord
 
DefaultColWidthRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord

Constructs a DefaultColumnWidth record and sets its fields appropriately.

DefaultDataLabelTextPropertiesRecord - Class in loci.poi.hssf.record

The default data label text properties record identifies the text characteristics of the preceeding text record.

DefaultDataLabelTextPropertiesRecord() - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
DefaultDataLabelTextPropertiesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Constructs a DefaultDataLabelTextProperties record and sets its fields appropriately.

DefaultEscherRecordFactory - Class in loci.poi.ddf

Generates escher records when provided the byte array containing those records.

DefaultEscherRecordFactory() - Constructor for class loci.poi.ddf.DefaultEscherRecordFactory

Creates an instance of the escher record factory

DefaultMetadataOptions - Class in loci.formats.in

Source code:
 Trac,
 Gitweb

DefaultMetadataOptions() - Constructor for class loci.formats.in.DefaultMetadataOptions
 
DefaultMetadataOptions(MetadataLevel) - Constructor for class loci.formats.in.DefaultMetadataOptions
 
defaultMinMax(int) - Static method in class loci.formats.FormatTools

Get the default range for the specified pixel type.

defaultrowheight - Variable in class loci.poi.hssf.model.Sheet
 
DefaultRowHeightRecord - Class in loci.poi.hssf.record

Title:        Default Row Height Record
 Description:  Row height for rows with undefined or not explicitly defined
               heights.

DefaultRowHeightRecord() - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord
 
DefaultRowHeightRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord

Constructs a DefaultRowHeight record and sets its fields appropriately.

defaultRWBufferSize - Static variable in class loci.common.NIOFileHandle

Default NIO buffer size to facilitate buffered I/O for read/write streams.

defaultValue - Variable in class loci.plugins.prefs.BooleanOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.DoubleOption

The option's default value.

defaultValue - Variable in class loci.plugins.prefs.StringOption

The option's default value.

delayTime - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
DelegateReader - Class in loci.formats

DelegateReader is a file format reader that selects which reader to use
 for a format if there are two readers which handle the same format.

DelegateReader(String, String) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

DelegateReader(String, String[]) - Constructor for class loci.formats.DelegateReader

Constructs a new delegate reader.

delete() - Method in class loci.common.Location

Deletes this file.

delete() - Method in interface loci.poi.poifs.filesystem.Entry

Delete this Entry.

delete() - Method in class loci.poi.poifs.filesystem.EntryNode

Delete this Entry.

deleteChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty

Delete a Property

DeletedArea3DPtg - Class in loci.poi.hssf.record.formula

Title:        Deleted Area 3D Ptg - 3D referecnce (Sheet + Area)

DeletedArea3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg

Creates new DeletedArea3DPtg

DeletedArea3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg
 
deleteData(String) - Method in class loci.tests.IOTester
 
DeletedRef3DPtg - Class in loci.poi.hssf.record.formula

Title:        Deleted Reference 3D Ptg

DeletedRef3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg

Creates new DeletedRef3DPtg

DeletedRef3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg
 
deleteOnExit() - Method in class loci.common.Location

Request that this file be deleted when the JVM terminates.

DELTA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DELTA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the fourth lifting step coefficient

DeltaRecord - Class in loci.poi.hssf.record

Title:        Delta Record

DeltaRecord() - Constructor for class loci.poi.hssf.record.DeltaRecord
 
DeltaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DeltaRecord

Constructs a Delta record and sets its fields appropriately.

DeltavisionReader - Class in loci.formats.in

DeltavisionReader is the file format reader for Deltavision files.

DeltavisionReader() - Constructor for class loci.formats.in.DeltavisionReader

Constructs a new Deltavision reader.

denom - Variable in class loci.formats.tiff.TiffRational

Components of the rational's fractional representation.

DependencyException - Exception in loci.common.services

Exception thrown when there is an object instantiation error or error
 processing dependencies.

DependencyException(String) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(String, Class<? extends Service>, Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

DependencyException(Throwable) - Constructor for exception loci.common.services.DependencyException

Default constructor.

depth - Variable in class loci.formats.tools.AmiraParameters
 
Dequantizer - Class in jj2000.j2k.quantization.dequantizer

This is the abstract class from which all dequantizers must inherit.

Dequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.Dequantizer

Initializes the source of compressed data.

DequantizerParams - Class in jj2000.j2k.quantization.dequantizer

This is the generic ineterface for dequantization parameters.

DequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.DequantizerParams
 
derived - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Whether or not the components in the current tile uses a derived
 quantization step size (only relevant in non reversible quantization
 mode).

DEST_DISTANCE_REF_KILOMETERS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

DEST_DISTANCE_REF_MILES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDestDistanceRef" tag.

destinationBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The sequence of destination bands to receive the source data.

Detector - Class in ome.xml.model
 
Detector() - Constructor for class ome.xml.model.Detector

Default constructor.

Detector(Element, OMEModel) - Constructor for class ome.xml.model.Detector

Constructs Detector recursively from an XML DOM tree.

Detector(Detector) - Constructor for class ome.xml.model.Detector

Copy constructor.

detectorGain - Variable in class loci.formats.in.BaseZeissReader
 
detectorOffset - Variable in class loci.formats.in.BaseZeissReader
 
DetectorSettings - Class in ome.xml.model
 
DetectorSettings() - Constructor for class ome.xml.model.DetectorSettings

Default constructor.

DetectorSettings(Element, OMEModel) - Constructor for class ome.xml.model.DetectorSettings

Constructs DetectorSettings recursively from an XML DOM tree.

DetectorSettings(DetectorSettings) - Constructor for class ome.xml.model.DetectorSettings

Copy constructor.

DetectorType - Enum in ome.xml.model.enums
 
DetectorTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DetectorType.

DetectorTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DetectorTypeEnumHandler
 
detType - Variable in class loci.formats.in.SDTInfo

Detector type (SPC-930 in camera mode).

DG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
 
DGG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
 
DIAMONDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DIAMONDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Diamonds

Dichroic - Class in ome.xml.model
 
Dichroic() - Constructor for class ome.xml.model.Dichroic

Default constructor.

Dichroic(Element, OMEModel) - Constructor for class ome.xml.model.Dichroic

Constructs Dichroic recursively from an XML DOM tree.

Dichroic(Dichroic) - Constructor for class ome.xml.model.Dichroic

Copy constructor.

DichroicRef - Class in ome.xml.model
 
DichroicRef() - Constructor for class ome.xml.model.DichroicRef

Default constructor.

DichroicRef(Element, OMEModel) - Constructor for class ome.xml.model.DichroicRef

Constructs DichroicRef recursively from an XML DOM tree.

DichroicRef(DichroicRef) - Constructor for class ome.xml.model.DichroicRef

Copy constructor.

DICOM_MAGIC_STRING - Static variable in class loci.formats.in.DicomReader
 
DicomReader - Class in loci.formats.in

DicomReader is the file format reader for DICOM files.

DicomReader() - Constructor for class loci.formats.in.DicomReader

Constructs a new DICOM reader.

dictionary - Variable in class loci.poi.hpsf.Section

Maps property IDs to section-private PID strings.

difference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression

Performs in-place differencing according to the given predictor value.

DIFFERENTIAL_CORRECTION_APPLIED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIFFERENTIAL_CORRECTION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSDifferential" tag.

DIGITAL_ZOOM_RATIO - Static variable in class loci.formats.tiff.IFD
 
dilate() - Method in class loci.plugins.util.RecordedImageProcessor
 
dimensionOrder - Variable in class loci.formats.CoreMetadata

Order in which dimensions are stored.

DimensionOrder - Enum in ome.xml.model.enums
 
DimensionOrderEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for DimensionOrder.

DimensionOrderEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DimensionOrderEnumHandler
 
DimensionsRecord - Class in loci.poi.hssf.record

Title:        Dimensions Record

DimensionsRecord() - Constructor for class loci.poi.hssf.record.DimensionsRecord
 
DimensionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DimensionsRecord

Constructs a Dimensions record and sets its fields appropriately.

DimensionSwapper - Class in loci.formats

Handles swapping the dimension order of an image series.

DimensionSwapper() - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper around a new image reader.

DimensionSwapper(IFormatReader) - Constructor for class loci.formats.DimensionSwapper

Constructs a DimensionSwapper with the given reader.

dimOrder - Variable in class loci.formats.AxisGuesser

Original ordering of internal dimensional axes.

dims - Variable in class loci.poi.hssf.model.Sheet
 
dimsloc - Variable in class loci.poi.hssf.model.Sheet
 
DIRECTION_REF_MAGNETIC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef",
 and "GPSDestBearingRef" tags.

DIRECTION_REF_TRUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSTrackRef", "GPSImgDirectionRef",
 and "GPSDestBearingRef" tags.

DIRECTORY_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants
 
DirectoryEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Directory objects
 managed by a Filesystem instance.

DirectoryNode - Class in loci.poi.poifs.filesystem

Simple implementation of DirectoryEntry

DirectoryProperty - Class in loci.poi.poifs.property

Directory property

DirectoryProperty(String) - Constructor for class loci.poi.poifs.property.DirectoryProperty

Default constructor

DirectoryProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DirectoryProperty

reader constructor

DirectoryProperty.PropertyComparator - Class in loci.poi.poifs.property
 
DirectoryProperty.PropertyComparator() - Constructor for class loci.poi.poifs.property.DirectoryProperty.PropertyComparator
 
display(PrintWriter, int) - Method in class loci.poi.ddf.EscherContainerRecord
 
display(PrintWriter, int) - Method in class loci.poi.ddf.EscherRecord

The display methods allows escher variables to print the record names
 according to their hierarchy.

DISPLAY_MODE_OPAQUE - Static variable in class loci.poi.hssf.record.TextRecord
 
DISPLAY_MODE_TRANSPARENT - Static variable in class loci.poi.hssf.record.TextRecord
 
displayDataBrowser(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
 
displayDialog(GenericDialog) - Method in class loci.plugins.in.IdDialog

Asks user whether Bio-Formats should automatically check for upgrades,
 and if so, checks for an upgrade and prompts user to install it.

displayDialog(GenericDialog) - Method in class loci.plugins.in.ImporterDialog

Displays the dialog, or grabs values from macro options.

displayDialog(GenericDialog) - Method in class loci.plugins.in.SeriesDialog
 
displayDialog(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog

Asks user whether Bio-Formats should automatically check for upgrades,
 and if so, checks for an upgrade and prompts user to install it.

DisplayHandler - Class in loci.plugins.in

Logic for displaying images and metadata onscreen using ImageJ.

DisplayHandler(ImportProcess) - Constructor for class loci.plugins.in.DisplayHandler
 
displayImage(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays the given image according to the configured options.

displayImage5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
 
displayImages(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler

Displays the given images according to the configured options.

displayNormal(ImagePlus) - Method in class loci.plugins.in.DisplayHandler

Displays in a normal ImageJ window.

displayOMEXML() - Method in class loci.plugins.in.DisplayHandler

Displays OME-XML metadata in a tree in its own window.

displayOriginalMetadata() - Method in class loci.plugins.in.DisplayHandler

Displays standard metadata in a table in its own window.

displayROIs(ImagePlus[]) - Method in class loci.plugins.in.DisplayHandler
 
displayView5D(ImagePlus) - Method in class loci.plugins.in.DisplayHandler
 
disposalMethod - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
dispose() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
dispose() - Method in class loci.formats.gui.CacheComponent
 
dispose() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
dispose() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
distance(int, int) - Method in class loci.formats.cache.CacheStrategy

Computes the distance from the given axis value to the
 axis center, taking into account the axis ordering scheme.

dither - Variable in class loci.formats.in.SDTInfo
 
DividePtg - Class in loci.poi.hssf.record.formula

This PTG implements the standard binomial divide "/"

DividePtg() - Constructor for class loci.poi.hssf.record.formula.DividePtg

Creates new AddPtg

DividePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DividePtg
 
DIVIDER - Static variable in class loci.tests.testng.TestTools
 
dl - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The coded (compressed) data length.

DLL_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created using DLL function SPC_save_data_to_sdtfile
 (no setup, only data).

dls - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of decomposition levels specifications

DM3_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader
 
DM4_MAGIC_BYTES - Static variable in class loci.formats.in.GatanReader
 
DNGReader - Class in loci.formats.in

DNGReader is the file format reader for Canon DNG (TIFF) files.

DNGReader() - Constructor for class loci.formats.in.DNGReader

Constructs a new DNG reader.

doCodestreamManipulation() - Method in class jj2000.j2k.util.CodestreamManipulator

This method performs the actual manipulation of the codestream which is
 the reparsing for tile parts and packed packet headers

doCrop() - Method in class loci.plugins.in.ImporterOptions
 
document - Variable in class loci.poi.POITextExtractor

The POIDocument that's open

DOCUMENT_NAME - Static variable in class loci.formats.tiff.IFD
 
DOCUMENT_SUMMARY_INFORMATION_ID - Static variable in class loci.poi.hpsf.wellknown.SectionIDMap

The DocumentSummaryInformation's first and second sections' format
 ID.

DOCUMENT_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants
 
DocumentBlock - Class in loci.poi.poifs.storage

A block of document data.

DocumentBlock(RawDataBlock, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

create a document block from a raw data block

DocumentBlock(RandomAccessInputStream, int) - Constructor for class loci.poi.poifs.storage.DocumentBlock

Create a single instance initialized with data.

DocumentDescriptor - Class in loci.poi.poifs.filesystem

Class DocumentDescriptor

DocumentDescriptor(POIFSDocumentPath, String) - Constructor for class loci.poi.poifs.filesystem.DocumentDescriptor

Trivial constructor

DocumentEntry - Interface in loci.poi.poifs.filesystem

This interface defines methods specific to Document objects
 managed by a Filesystem instance.

DocumentInputStream - Class in loci.poi.poifs.filesystem

This class provides methods to read a DocumentEntry managed by a
 Filesystem instance.

DocumentInputStream(DocumentEntry, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified DocumentEntry

DocumentInputStream(POIFSDocument, RandomAccessInputStream) - Constructor for class loci.poi.poifs.filesystem.DocumentInputStream

Create an InputStream from the specified Document

DocumentNode - Class in loci.poi.poifs.filesystem

Simple implementation of DocumentEntry

DocumentOutputStream - Class in loci.poi.poifs.filesystem

This class provides a wrapper over an OutputStream so that Document
 writers can't accidently go over their size limits

DocumentProperty - Class in loci.poi.poifs.property

Trivial extension of Property for POIFSDocuments

DocumentProperty(String, int) - Constructor for class loci.poi.poifs.property.DocumentProperty

Constructor

DocumentProperty(int, byte[], int) - Constructor for class loci.poi.poifs.property.DocumentProperty

reader constructor

DocumentSummaryInformation - Class in loci.poi.hpsf

Convenience class representing a DocumentSummary Information stream in a
 Microsoft Office document.

DocumentSummaryInformation(PropertySet) - Constructor for class loci.poi.hpsf.DocumentSummaryInformation

Creates a DocumentSummaryInformation from a given
 PropertySet.

doesContainsSheetName(String, int) - Method in class loci.poi.hssf.model.Workbook

Determines whether a workbook contains the privided sheet name.

domains - Variable in class loci.formats.FormatReader

List of domains in which this format is used.

doStitchTiles() - Method in class loci.plugins.in.ImporterOptions
 
DOT - Static variable in class loci.formats.ResourceNamer
 
DOT_RANGE - Static variable in class loci.formats.tiff.IFD
 
doTest() - Method in class loci.tests.testng.Configuration
 
DOTTED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DotTestListener - Class in loci.tests.testng

A TestNG listener that displays a "." for each passed test,
 an "F" for each failure and an "S" for each skip.

DotTestListener() - Constructor for class loci.tests.testng.DotTestListener
 
DOUBLE - Static variable in class loci.formats.FormatTools

Identifies the DOUBLE data type used to store pixel values.

DOUBLE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
DOUBLE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
 
DoubleAnnotation - Class in ome.xml.model
 
DoubleAnnotation() - Constructor for class ome.xml.model.DoubleAnnotation

Default constructor.

DoubleAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.DoubleAnnotation

Constructs DoubleAnnotation recursively from an XML DOM tree.

DoubleAnnotation(DoubleAnnotation) - Constructor for class ome.xml.model.DoubleAnnotation

Copy constructor.

DoubleList - Class in loci.poi.util

A List of double's; as full an implementation of the java.util.List
 interface as possible, with an eye toward minimal creation of
 objects

 the mimicry of List is as follows:
 
  if possible, operations designated 'optional' in the List
      interface are attempted
  wherever the List interface refers to an Object, substitute
      double
  wherever the List interface refers to a Collection or List,
      substitute DoubleList
 

 the mimicry is not perfect, however:
 
  operations involving Iterators or ListIterators are not
      supported
  remove(Object) becomes removeValue to distinguish it from
      remove(int index)
  subList is not supported
 

DoubleList() - Constructor for class loci.poi.util.DoubleList

create an DoubleList of default size

DoubleList(DoubleList) - Constructor for class loci.poi.util.DoubleList

create a copy of an existing DoubleList

DoubleList(int) - Constructor for class loci.poi.util.DoubleList

create an DoubleList with a predefined initial size

DoubleList2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of doubles.

DoubleList2d() - Constructor for class loci.poi.util.DoubleList2d
 
DoubleOption - Class in loci.plugins.prefs

A double option for one of the plugins.

DoubleOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the parameters from the given map.

DoubleOption(String, boolean, String, String, double) - Constructor for class loci.plugins.prefs.DoubleOption

Constructs a double option with the given parameters.

doublesToBytes(double[], boolean) - Static method in class loci.common.DataTools

Translates an array of double values into an array of byte values.

doubleToBytes(double, boolean) - Static method in class loci.common.DataTools

Translates the double value into an array of eight bytes.

doubleValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a double.

doUpgradeCheck() - Method in class loci.plugins.in.ImporterOptions
 
download(URLConnection) - Static method in class loci.plugins.config.InstallWizard
 
download(URLConnection, File) - Static method in class loci.plugins.config.InstallWizard
 
draw(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
draw(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
draw3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawBytes(byte[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawChars(char[], int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawDot(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawGlyphVector(GlyphVector, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, Color, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, int, int, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(Image, AffineTransform, ImageObserver) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawImage(BufferedImage, BufferedImageOp, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
DrawingDump - Class in loci.poi.util

Dump out the aggregated escher records

DrawingDump() - Constructor for class loci.poi.util.DrawingDump
 
DrawingGroupRecord - Class in loci.poi.hssf.record
 
DrawingGroupRecord() - Constructor for class loci.poi.hssf.record.DrawingGroupRecord
 
DrawingGroupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingGroupRecord
 
DrawingManager - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager
 
DrawingManager2 - Class in loci.poi.hssf.model

Provides utilities to manage drawing groups.

DrawingManager2(EscherDggRecord) - Constructor for class loci.poi.hssf.model.DrawingManager2
 
DrawingRecord - Class in loci.poi.hssf.record
 
DrawingRecord() - Constructor for class loci.poi.hssf.record.DrawingRecord
 
DrawingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecord
 
DrawingRecordForBiffViewer - Class in loci.poi.hssf.record

This is purely for the biff viewer.

DrawingRecordForBiffViewer() - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
DrawingRecordForBiffViewer(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
DrawingSelectionRecord - Class in loci.poi.hssf.record
 
DrawingSelectionRecord() - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord
 
DrawingSelectionRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DrawingSelectionRecord
 
drawLine(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawLine(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawLine(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawPolyline(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRect(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRenderableImage(RenderableImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRenderedImage(RenderedImage, AffineTransform) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(String) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawString(String, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
drawString(String, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(String, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(AttributedCharacterIterator, float, float) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
drawString(AttributedCharacterIterator, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
DSFRecord - Class in loci.poi.hssf.record

Title: Double Stream Flag Record

DSFRecord() - Constructor for class loci.poi.hssf.record.DSFRecord
 
DSFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DSFRecord

Constructs a DBCellRecord and sets its fields appropriately.

dsInf - Variable in class loci.poi.POIDocument

Holds further metadata on our document

dstHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The height of the region of the destination image to be written.

dstMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The X coordinate of the upper left pixel to be written in the
 destination image.

dstMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The Y coordinate of the upper left pixel to be written in the
 destination image.

dstWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The width of the region of the destination image to be written.

dstXOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The horizontal destination offset used, along with
 sourceXOffset and subsampleX, to map
 between horizontal source and destination pixel coordinates.

dstYOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The vertical destination offset used, along with
 sourceYOffset and subsampleY, to map
 between horizontal source and destination pixel coordinates.

DummyGraphics2d - Class in loci.poi.hssf.usermodel
 
DummyGraphics2d() - Constructor for class loci.poi.hssf.usermodel.DummyGraphics2d
 
DummyMetadata - Class in loci.formats.meta

Source code:
 Trac,
 Gitweb

DummyMetadata() - Constructor for class loci.formats.meta.DummyMetadata
 
DummyMetadata - Class in ome.xml.meta

A dummy implementation for MetadataStore and
 MetadataRetrieve that is used when no other
 metadata implementations are available.

DummyMetadata() - Constructor for class ome.xml.meta.DummyMetadata
 
dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWCompressor
 
dump(PrintStream) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
 
dump(byte[], int, int, PrintStream) - Method in class loci.poi.ddf.EscherDump

Decodes the escher stream from a byte array and dumps the results to
 a print stream.

dump(int, byte[], PrintStream) - Method in class loci.poi.ddf.EscherDump
 
dump(byte[], long, OutputStream, int, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, OutputStream, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to an OutputStream

dump(byte[], long, int) - Static method in class loci.poi.util.HexDump

dump an array of bytes to a String

dump(InputStream, PrintStream, int, int) - Static method in class loci.poi.util.HexDump

Dumps bytesToDump bytes to an output stream.

dump() - Method in class mdbtools.dbengine.MemoryData
 
dumpDrawingGroupRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Spits out a list of all the drawing records in the workbook.

dumpDrawingRecords(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Aggregates the drawing records and dumps the escher record hierarchy
 to the standard output.

dumpOld(long, InputStream, PrintStream) - Method in class loci.poi.ddf.EscherDump

This version of dump is a translation from the open office escher dump routine.

dumpXML(String, Document, Element) - Static method in class loci.common.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

dumpXML(String, Document, Element, boolean) - Static method in class loci.common.xml.XMLTools

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in class ome.xml.meta.AbstractOMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in interface ome.xml.meta.OMEXMLMetadata

Dumps the given OME-XML DOM tree to a string.

dumpXML() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
duplicate(Class<? extends IFormatReader>) - Method in class loci.formats.ReaderWrapper

Performs a deep copy of the reader, including nested wrapped readers.

duplicate(Class<? extends IFormatWriter>) - Method in class loci.formats.WriterWrapper

Performs a deep copy of the writer, including nested wrapped writers.

duplicate() - Method in class loci.plugins.util.RecordedImageProcessor
 
DV_MAGIC_BYTES_1 - Static variable in class loci.formats.in.DeltavisionReader
 
DV_MAGIC_BYTES_2 - Static variable in class loci.formats.in.DeltavisionReader
 
dwt - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

Reference to the DWT module





E

ealDE - Variable in class loci.formats.in.SDTInfo
 
EBCOTRateAllocator - Class in jj2000.j2k.entropy.encoder

This implements the EBCOT post compression rate allocation algorithm.

EBCOTRateAllocator(CodedCBlkDataSrcEnc, LayersInfo, CodestreamWriter, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Initializes the EBCOT rate allocator of entropy coded data.

ECAT7_MAGIC - Static variable in class loci.formats.in.Ecat7Reader
 
Ecat7Reader - Class in loci.formats.in

Ecat7Reader is the file format reader for ECAT 7 files.

Ecat7Reader() - Constructor for class loci.formats.in.Ecat7Reader

Constructs a new ECAT7 reader.

ecopts - Variable in class jj2000.j2k.decoder.DecoderSpecs

The Entropy decoder options specifications

ECS_GRAY - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
 
ECS_sRGB - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

The enumerated color space defined in JP2 file format.

ECS_YCC - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
 
EditTiffG - Class in loci.formats.tools

Provides a GUI for editing TIFF file comments.

EditTiffG() - Constructor for class loci.formats.tools.EditTiffG
 
EFBiffViewer - Class in loci.poi.hssf.dev
 
EFBiffViewer() - Constructor for class loci.poi.hssf.dev.EFBiffViewer

Creates a new instance of EFBiffViewer

elementInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
Ellipse - Class in ome.xml.model
 
Ellipse() - Constructor for class ome.xml.model.Ellipse

Default constructor.

Ellipse(Element, OMEModel) - Constructor for class ome.xml.model.Ellipse

Constructs Ellipse recursively from an XML DOM tree.

Ellipse(Ellipse) - Constructor for class ome.xml.model.Ellipse

Copy constructor.

EM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the electron microscopy domain.

EmbeddedObjectRefSubRecord - Class in loci.poi.hssf.record

A sub-record within the OBJ record which stores a reference to an object
 stored in a separate entry within the OLE2 compound file.

EmbeddedObjectRefSubRecord() - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
EmbeddedObjectRefSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Constructs an EmbeddedObjectRef record and sets its fields appropriately.

EmissionFilterRef - Class in ome.xml.model
 
EmissionFilterRef() - Constructor for class ome.xml.model.EmissionFilterRef

Default constructor.

EmissionFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.EmissionFilterRef

Constructs EmissionFilterRef recursively from an XML DOM tree.

EmissionFilterRef(EmissionFilterRef) - Constructor for class ome.xml.model.EmissionFilterRef

Copy constructor.

EMPTY_INTERPOLATED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord
 
EMPTY_NOT_PLOTTED - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord
 
EMPTY_ZERO - Static variable in class loci.poi.hssf.record.SheetPropertiesRecord
 
emWavelength - Variable in class loci.formats.in.BaseZeissReader
 
enableIJLogging(boolean) - Static method in class loci.common.DebugTools

Enable SLF4J logging using logback, in the context of ImageJ.

enableIJLogging(boolean, Appender<ILoggingEvent>) - Static method in class loci.common.LogbackTools
 
enableLogging(String) - Static method in class loci.common.DebugTools

Attempts to enable SLF4J logging via logback or log4j
 without an external configuration file.

enableLogging(String) - Static method in class loci.common.Log4jTools

Attempts to enable SLF4J logging via log4j
 without an external configuration file.

enableLogging(String) - Static method in class loci.common.LogbackTools

Attempts to enable SLF4J logging via logback
 without an external configuration file.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Encodes the supplied image data, writing to the currently set
 ImageOutputStream.

encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor
 
encode(byte[], int, int, int, int[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor
 
encode(int, int, int, BitOutputBuffer) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Encodes information for the specified element of the tree,
 given the threshold and sends it to the 'out' stream.

encode1D(byte[], int, int, int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

One-dimensionally encode a row of data using CCITT Huffman compression.

encodeMainHeader() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Write main header.

encodePacket(int, int, int, int, CBlkRateDistStats[][], int[][], BitOutputBuffer, byte[], int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Encodes a packet and returns the buffer containing the encoded packet
 header.

encodeRLE(byte[], int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor

Encode a row of data using Modified Huffman Compression also known as
 CCITT RLE (Run Lenth Encoding).

encodeT4(boolean, boolean, byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor

Encode a buffer of data using CCITT T.4 Compression also known as
 Group 3 facsimile compression.

encodeT6(byte[], int, int, int, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor

Encode a buffer of data using CCITT T.6 Compression also known as
 Group 4 facsimile compression.

encodeTilePartHeader(int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Writes tile-part header.

ENCODING - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
 
ENCODING - Static variable in class loci.common.Constants
 
encoding - Variable in class loci.common.RandomAccessInputStream
 
ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFCell
 
ENCODING_COMPRESSED_UNICODE - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.
POI will now properly handle unicode strings without
 forceing an encoding


ENCODING_UNCHANGED - Static variable in class loci.poi.hssf.usermodel.HSSFCell
 
ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFCell
 
ENCODING_UTF_16 - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.
POI will now properly handle unicode strings without
 forceing an encoding


end - Variable in class loci.formats.Modulo
 
END_OF_CHAIN - Static variable in interface loci.poi.poifs.common.POIFSConstants
 
endDocument() - Method in class loci.formats.in.ND2Handler
 
endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end double underline

endDoubleUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end double underline

endElement(String, String, String) - Method in class loci.formats.in.FlexReader.FlexHandler
 
endElement(String, String, String) - Method in class loci.formats.in.LeicaHandler
 
endElement(String, String, String, Attributes) - Method in class loci.formats.in.ND2Handler
 
endElement(String, String, String) - Method in class loci.formats.in.ZeissTIFFHandler
 
EndianType - Interface in jj2000.j2k.io

This interface defines constants for the two types of byte
 ordering: little- and big-endian.

endInsertEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
EndRecord - Class in loci.poi.hssf.record

The end record defines the end of a block of records for a (Graphing)
 data object.

EndRecord() - Constructor for class loci.poi.hssf.record.EndRecord
 
EndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndRecord

Constructs a EndRecord record and sets its fields appropriately.

endReplacePixels() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
EndSubRecord - Class in loci.poi.hssf.record

The end data record is used to denote the end of the subrecords.

EndSubRecord() - Constructor for class loci.poi.hssf.record.EndSubRecord
 
EndSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EndSubRecord

Constructs a End record and sets its fields appropriately.

endTime - Variable in class loci.formats.in.SDTInfo

Macro time of the last photon.

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the end underline

endUnderline() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the end underline

endWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
endWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
Engine - Class in mdbtools.dbengine

Engine is the entry point into a java based database backend
 The datastore for the data is un-important since the engine communiates
 with the data via a set of defined interfaces.

Engine() - Constructor for class mdbtools.dbengine.Engine
 
entriesPerBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock
 
entriesPerXBATBlock(int) - Static method in class loci.poi.poifs.storage.BATBlock
 
EntropyCoder - Class in jj2000.j2k.entropy.encoder

This abstract class provides the general interface for block-based entropy
 encoders.

EntropyCoder(CBlkQuantDataSrcEnc) - Constructor for class jj2000.j2k.entropy.encoder.EntropyCoder

Initializes the source of quantized wavelet coefficients.

EntropyDecoder - Class in jj2000.j2k.entropy.decoder

This is the abstract class from which all entropy decoders must
 inherit.

EntropyDecoder(CodedCBlkDataSrcDec) - Constructor for class jj2000.j2k.entropy.decoder.EntropyDecoder

Initializes the source of compressed data.

Entry - Interface in loci.poi.poifs.filesystem

This interface provides access to an object managed by a Filesystem
 instance.

entry - Variable in class mdbtools.libmdb.MdbTableDef
 
EntryNode - Class in loci.poi.poifs.filesystem

Abstract implementation of Entry

 Extending classes should override isDocument() or isDirectory(), as
 appropriate

 Extending classes must override isDeleteOK()

EntryNode(Property, DirectoryNode) - Constructor for class loci.poi.poifs.filesystem.EntryNode

create a DocumentNode.

entrySet() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entrySetByValue() - Method in class loci.poi.util.BinaryTree

Returns a set view of the mappings contained in this map.

entryToString(Object, String) - Static method in class loci.formats.tools.AmiraParameters
 
Enumeration - Interface in ome.xml.model.enums

Abstract superclass for all enumerations.

EnumerationException - Exception in ome.xml.model.enums

EnumerationException is the exception thrown when an enumeration is
 invalid or not found.

EnumerationException() - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumerationException(String) - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumerationException(String, Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumerationException(Throwable) - Constructor for exception ome.xml.model.enums.EnumerationException
 
EnumException - Exception in loci.common.enumeration

Source code:
 Trac,
 Gitweb

EnumException() - Constructor for exception loci.common.enumeration.EnumException
 
EnumException(String) - Constructor for exception loci.common.enumeration.EnumException
 
EnumException(String, Throwable) - Constructor for exception loci.common.enumeration.EnumException
 
EnumException(Throwable) - Constructor for exception loci.common.enumeration.EnumException
 
ENVELOPE_10_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
ENVELOPE_CS_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
ENVELOPE_DL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
ENVELOPE_MONARCH_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
EOC - Static variable in interface jj2000.j2k.codestream.Markers

End of codestream (EOC): 0xFFD9

eof() - Method in class loci.poi.poifs.storage.RawDataBlock

When we read the data, did we hit end of file?

EOF_ERROR_MSG - Static variable in class loci.common.AbstractNIOHandle

Error message to be used when instantiating an EOFException.

eofLoc - Variable in class loci.poi.hssf.model.Sheet
 
EOFRecord - Class in loci.poi.hssf.record

End Of File record.

EOFRecord() - Constructor for class loci.poi.hssf.record.EOFRecord
 
EOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.EOFRecord

Constructs a EOFRecord record and sets its fields appropriately.

EOI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
EOL - Static variable in class loci.poi.util.HexDump
 
EPH - Static variable in interface jj2000.j2k.codestream.Markers

End of packet header (EPH): 0xFF92

EPH_LENGTH - Static variable in interface jj2000.j2k.codestream.Markers

Length of EPH marker (in bytes)

ephs - Variable in class jj2000.j2k.decoder.DecoderSpecs

The End of Packet Headers (EPH) markers specifications

EPOCH_DIFF - Static variable in class loci.poi.hpsf.Util

The difference between the Windows epoch (1601-01-01
 00:00:00) and the Unix epoch (1970-01-01 00:00:00) in
 milliseconds: 11644473600000L.

EPSILON - Static variable in class loci.common.Constants
 
EPSReader - Class in loci.formats.in

Reader is the file format reader for Encapsulated PostScript (EPS) files.

EPSReader() - Constructor for class loci.formats.in.EPSReader

Constructs a new EPS reader.

EPSWriter - Class in loci.formats.out

EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.

EPSWriter() - Constructor for class loci.formats.out.EPSWriter
 
epxDiv - Variable in class loci.formats.in.SDTInfo
 
equal(byte[], byte[]) - Static method in class loci.poi.hpsf.Util

Checks whether two byte arrays a and b
 are equal.

EqualPtg - Class in loci.poi.hssf.record.formula
 
EqualPtg() - Constructor for class loci.poi.hssf.record.formula.EqualPtg

Creates new AddPtg

EqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.EqualPtg
 
equalReaders(IFormatReader, IFormatReader) - Static method in class loci.formats.FormatTools

Check if the two given readers are equal.

equals(Object) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
equals(Object) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Tests if the 'obj' object is the same filter as this one.

equals(Object) - Method in class loci.common.Location
 
equals(Object) - Method in class loci.common.Region
 
equals(Node, Node) - Method in class loci.formats.services.OMEXMLServiceImpl

Compares two Elements for equality.

equals(Object) - Method in class loci.formats.tiff.TiffRational

Indicates whether some other object is "equal to" this one.

equals(Object) - Method in class loci.plugins.config.FormatEntry
 
equals(Object) - Method in class loci.plugins.prefs.OptionsList
 
equals(Object) - Method in class loci.poi.ddf.EscherComplexProperty

Determine whether this property is equal to another property.

equals(Object) - Method in class loci.poi.ddf.EscherSimpleProperty

Returns true if one escher property is equal to another.

equals(Object) - Method in class loci.poi.hpsf.ClassID

Checks whether this ClassID is equal to another
 object.

equals(Object) - Method in class loci.poi.hpsf.Property

Compares two properties.

equals(Object) - Method in class loci.poi.hpsf.PropertySet

Returns true if the PropertySet is equal
 to the specified parameter, else false.

equals(Object) - Method in class loci.poi.hpsf.Section

Checks whether this section is equal to another object.

equals(Object) - Method in class loci.poi.hpsf.SpecialPropertySet
 
equals(Collection, Collection) - Static method in class loci.poi.hpsf.Util

Checks whether two collections are equal.

equals(Object[], Object[]) - Static method in class loci.poi.hpsf.Util

Compares to object arrays with regarding the objects' order.

equals(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
equals(Object) - Method in class loci.poi.hssf.record.BlankRecord
 
equals(Object) - Method in class loci.poi.hssf.record.BoolErrRecord
 
equals(Object) - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
equals(Object) - Method in class loci.poi.hssf.record.FormulaRecord
 
equals(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
equals(Object) - Method in class loci.poi.hssf.record.NumberRecord
 
equals(Object) - Method in class loci.poi.hssf.record.RowRecord
 
equals(Object) - Method in class loci.poi.hssf.record.SSTRecord
 
equals(Object) - Method in class loci.poi.hssf.record.UnicodeString

Our handling of equals is inconsistent with compareTo.

equals(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
 
equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
 
equals(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow
 
equals(Region) - Method in class loci.poi.hssf.util.Region
 
equals(Object) - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

equality.

equals(Object) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

equality.

equals(Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator

Object equality, implemented as object identity

equals(Object) - Method in class loci.poi.util.DoubleList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.IntList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.poi.util.ShortList

Compares the specified object with this list for equality.

equals(Object) - Method in class loci.tests.testng.Configuration
 
equals(Object) - Method in class mdbtools.dbengine.sql.Condition
 
EQUALS - Static variable in class mdbtools.dbengine.sql.Equation
 
equals(Object) - Method in class mdbtools.dbengine.sql.Equation
 
equals(Object) - Method in class mdbtools.dbengine.sql.FQColumn
 
equals(Object) - Method in class mdbtools.dbengine.sql.Join
 
equals(Object) - Method in class ome.xml.model.primitives.PrimitiveType
 
equalsContents(Object) - Method in class loci.poi.hpsf.CustomProperty

Compares two custom properties for equality.

equalStrips - Variable in class loci.formats.in.MinimalTiffReader
 
Equation - Class in mdbtools.dbengine.sql
 
Equation() - Constructor for class mdbtools.dbengine.sql.Equation
 
ERFListener - Interface in loci.poi.hssf.eventmodel

An ERFListener is registered with the EventRecordFactory.

erode() - Method in class loci.plugins.util.RecordedImageProcessor
 
ERROR - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

error(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler
 
error(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler
 
ERROR - Static variable in class loci.poi.util.POILogger
 
ERROR_DIV_0 - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NA - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NAME - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NULL - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_NUM - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_REF - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ERROR_VALUE - Static variable in interface loci.poi.hssf.usermodel.HSSFErrorConstants
 
ErrPtg - Class in loci.poi.hssf.record.formula
 
ErrPtg() - Constructor for class loci.poi.hssf.record.formula.ErrPtg

Creates new ErrPtg

ErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ErrPtg
 
ers - Variable in class jj2000.j2k.decoder.DecoderSpecs

The error resilience specifications concerning the entropy
 decoder

ERS_SEG_SYMBOLS - Static variable in interface jj2000.j2k.codestream.Markers

The "segmentation symbols used" flag within Sers: 2

ERS_SOP - Static variable in interface jj2000.j2k.codestream.Markers

The "SOP marker segments used" flag within Sers: 1

escapeXML(String) - Static method in class loci.common.xml.XMLTools

Escape special characters.

EscherAggregate - Class in loci.poi.hssf.record

This class is used to aggregate the MSODRAWING and OBJ record
 combinations.

EscherAggregate(DrawingManager2) - Constructor for class loci.poi.hssf.record.EscherAggregate
 
EscherArrayProperty - Class in loci.poi.ddf

Escher array properties are the most wierd construction ever invented
 with all sorts of special cases.

EscherArrayProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty
 
EscherArrayProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherArrayProperty
 
EscherBitmapBlip - Class in loci.poi.ddf
 
EscherBitmapBlip() - Constructor for class loci.poi.ddf.EscherBitmapBlip
 
EscherBlipRecord - Class in loci.poi.ddf
 
EscherBlipRecord() - Constructor for class loci.poi.ddf.EscherBlipRecord
 
EscherBlipWMFRecord - Class in loci.poi.ddf

The blip record is used to hold details about large binary objects that occur in escher such
 as JPEG, GIF, PICT and WMF files.

EscherBlipWMFRecord() - Constructor for class loci.poi.ddf.EscherBlipWMFRecord
 
EscherBoolProperty - Class in loci.poi.ddf

Represents a boolean property.

EscherBoolProperty(short, int) - Constructor for class loci.poi.ddf.EscherBoolProperty

Create an instance of an escher boolean property.

EscherBSERecord - Class in loci.poi.ddf

The BSE record is related closely to the EscherBlipRecord and stores
 extra information about the blip.

EscherBSERecord() - Constructor for class loci.poi.ddf.EscherBSERecord
 
EscherChildAnchorRecord - Class in loci.poi.ddf

The escher child achor record is used to specify the position of a shape under an
 existing group.

EscherChildAnchorRecord() - Constructor for class loci.poi.ddf.EscherChildAnchorRecord
 
EscherClientAnchorRecord - Class in loci.poi.ddf

The escher client anchor specifies which rows and cells the shape is bound to as well as
 the offsets within those cells.

EscherClientAnchorRecord() - Constructor for class loci.poi.ddf.EscherClientAnchorRecord
 
EscherClientDataRecord - Class in loci.poi.ddf

The EscherClientDataRecord is used to store client specific data about the position of a
 shape within a container.

EscherClientDataRecord() - Constructor for class loci.poi.ddf.EscherClientDataRecord
 
EscherComplexProperty - Class in loci.poi.ddf

A complex property differs from a simple property in that the data can not fit inside a 32 bit
 integer.

EscherComplexProperty(short, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property id and a byte array containing the complex
 data value.

EscherComplexProperty(short, boolean, byte[]) - Constructor for class loci.poi.ddf.EscherComplexProperty

Create a complex property using the property number, a flag to indicate whether this is a
 blip reference and the complex property data.

EscherContainerRecord - Class in loci.poi.ddf

Escher container records store other escher records as children.

EscherContainerRecord() - Constructor for class loci.poi.ddf.EscherContainerRecord
 
EscherDggRecord - Class in loci.poi.ddf

This record defines the drawing groups used for a particular sheet.

EscherDggRecord() - Constructor for class loci.poi.ddf.EscherDggRecord
 
EscherDggRecord.FileIdCluster - Class in loci.poi.ddf
 
EscherDggRecord.FileIdCluster(int, int) - Constructor for class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
EscherDgRecord - Class in loci.poi.ddf

This record simply holds the number of shapes in the drawing group and the
 last shape id used for this drawing group.

EscherDgRecord() - Constructor for class loci.poi.ddf.EscherDgRecord
 
EscherDump - Class in loci.poi.ddf

Used to dump the contents of escher records to a PrintStream.

EscherDump() - Constructor for class loci.poi.ddf.EscherDump
 
EscherGraphics - Class in loci.poi.hssf.usermodel

Translates Graphics calls into escher calls.

EscherGraphics(HSSFShapeGroup, HSSFWorkbook, Color, float) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics

Construct an escher graphics object.

EscherGraphics2d - Class in loci.poi.hssf.usermodel

Translates Graphics2d calls into escher calls.

EscherGraphics2d(EscherGraphics) - Constructor for class loci.poi.hssf.usermodel.EscherGraphics2d

Constructs one escher graphics object from an escher graphics object.

EscherMetafileBlip - Class in loci.poi.ddf
 
EscherMetafileBlip() - Constructor for class loci.poi.ddf.EscherMetafileBlip
 
EscherOptRecord - Class in loci.poi.ddf

The opt record is used to store property values for a shape.

EscherOptRecord() - Constructor for class loci.poi.ddf.EscherOptRecord
 
EscherPictBlip - Class in loci.poi.ddf
 
EscherPictBlip() - Constructor for class loci.poi.ddf.EscherPictBlip
 
EscherProperties - Class in loci.poi.ddf

Provides a list of all known escher properties including the description and
 type.

EscherProperties() - Constructor for class loci.poi.ddf.EscherProperties
 
EscherProperty - Class in loci.poi.ddf

This is the abstract base class for all escher properties.

EscherProperty(short) - Constructor for class loci.poi.ddf.EscherProperty

The id is distinct from the actual property number.

EscherProperty(short, boolean, boolean) - Constructor for class loci.poi.ddf.EscherProperty

Constructs a new escher property.

EscherPropertyFactory - Class in loci.poi.ddf

Generates a property given a reference into the byte array storing that property.

EscherPropertyFactory() - Constructor for class loci.poi.ddf.EscherPropertyFactory
 
EscherPropertyMetaData - Class in loci.poi.ddf

This class stores the type and description of an escher property.

EscherPropertyMetaData(String) - Constructor for class loci.poi.ddf.EscherPropertyMetaData
 
EscherPropertyMetaData(String, byte) - Constructor for class loci.poi.ddf.EscherPropertyMetaData
 
EscherRecord - Class in loci.poi.ddf

The base abstract record from which all escher records are defined.

EscherRecord() - Constructor for class loci.poi.ddf.EscherRecord

Create a new instance

EscherRecordFactory - Interface in loci.poi.ddf

The escher record factory interface allows for the creation of escher
 records from a pointer into a data array.

EscherRGBProperty - Class in loci.poi.ddf

A color property.

EscherRGBProperty(short, int) - Constructor for class loci.poi.ddf.EscherRGBProperty
 
EscherSerializationListener - Interface in loci.poi.ddf

Interface for listening to escher serialization events.

EscherShapePathProperty - Class in loci.poi.ddf

Defines the constants for the various possible shape paths.

EscherShapePathProperty(short, int) - Constructor for class loci.poi.ddf.EscherShapePathProperty
 
EscherSimpleProperty - Class in loci.poi.ddf

A simple property is of fixed length and as a property number in addition
 to a 32-bit value.

EscherSimpleProperty(short, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

The id is distinct from the actual property number.

EscherSimpleProperty(short, boolean, boolean, int) - Constructor for class loci.poi.ddf.EscherSimpleProperty

Constructs a new escher property.

EscherSpgrRecord - Class in loci.poi.ddf

The spgr record defines information about a shape group.

EscherSpgrRecord() - Constructor for class loci.poi.ddf.EscherSpgrRecord
 
EscherSplitMenuColorsRecord - Class in loci.poi.ddf

A list of the most recently used colours for the drawings contained in
 this document.

EscherSplitMenuColorsRecord() - Constructor for class loci.poi.ddf.EscherSplitMenuColorsRecord
 
EscherSpRecord - Class in loci.poi.ddf

Together the the EscherOptRecord this record defines some of the basic
 properties of a shape.

EscherSpRecord() - Constructor for class loci.poi.ddf.EscherSpRecord
 
EscherTextboxRecord - Class in loci.poi.ddf

Holds data from the parent application.

EscherTextboxRecord() - Constructor for class loci.poi.ddf.EscherTextboxRecord
 
evalFile(String) - Method in class loci.formats.in.ZeissTIFFReader

Evaluate the metadata of a TIFF/XML file collection, and return this to the user.

EventRecordFactory - Class in loci.poi.hssf.eventmodel

Event-based record factory.

EventRecordFactory() - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Construct an abortable EventRecordFactory.

EventRecordFactory(boolean) - Constructor for class loci.poi.hssf.eventmodel.EventRecordFactory

Create an EventRecordFactory

ExcelExtractor - Class in loci.poi.hssf.extractor

A text extractor for Excel files.

ExcelExtractor(HSSFWorkbook) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor
 
ExcelExtractor(POIFSFileSystem) - Constructor for class loci.poi.hssf.extractor.ExcelExtractor
 
ExcitationFilterRef - Class in ome.xml.model
 
ExcitationFilterRef() - Constructor for class ome.xml.model.ExcitationFilterRef

Default constructor.

ExcitationFilterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExcitationFilterRef

Constructs ExcitationFilterRef recursively from an XML DOM tree.

ExcitationFilterRef(ExcitationFilterRef) - Constructor for class ome.xml.model.ExcitationFilterRef

Copy constructor.

exec(String) - Method in class loci.common.ReflectedUniverse

Deprecated.
Executes a command in the universe.

execute() - Method in class loci.plugins.in.ImportProcess

Performs the import preparation process,
 notifying status listeners at each step.

execute(SQL) - Method in class mdbtools.dbengine.Engine

execute is used to tell the engine to do something

execute(Object) - Method in interface mdbtools.dbengine.functions.Aggregate
 
execute(Object) - Method in class mdbtools.dbengine.functions.ConCat

take two strings stick them together and return the result

execute(Object) - Method in class mdbtools.dbengine.functions.Count
 
execute(Object) - Method in interface mdbtools.dbengine.functions.Function

given the data for a column execute the function

execute(Object) - Method in class mdbtools.dbengine.functions.Length

execute the length function of a string

execute(Object) - Method in class mdbtools.dbengine.functions.Lower

convert column to lowercase

execute(Object) - Method in class mdbtools.dbengine.functions.Max
 
execute(Object) - Method in class mdbtools.dbengine.functions.Min
 
execute(Object) - Method in class mdbtools.dbengine.functions.Sum
 
execute(Object) - Method in class mdbtools.dbengine.functions.Upper

convert column to uppercase

execute() - Method in class mdbtools.dbengine.SelectEngine
 
EXECUTIVE_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
EXIF - Static variable in class loci.formats.tiff.IFD
 
EXIF_VERSION - Static variable in class loci.formats.tiff.IFD
 
EXIF_VERSION_2_1 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '1',
 '0'} to be used with the "EXIFVersion" tag to indicate
 EXIF version 2.1.

EXIF_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

An array of bytes containing the values {'0', '2', '2',
 '0'} to be used with the "EXIFVersion" tag to indicate
 EXIF version 2.2.

EXIFGPSTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF GPS Info IFD.

EXIFInteroperabilityTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF Interoperability IFD.

EXIFParentTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class containing the TIFF tags used to reference the EXIF and GPS IFDs.

EXIFTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in an EXIF IFD.

exists() - Method in class loci.common.Location

Returns whether or not the pathname exists.

exit() - Method in class loci.formats.tools.EditTiffG
 
exp - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

The quantization step "exponent" value, for each resolution level and
 subband, as it appears in the codestream.

exp() - Method in class loci.plugins.util.RecordedImageProcessor
 
expandCode(byte[], int, short, int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable

If expanded data doesnt fit into array only what will fit is written
 to buf and the return value indicates how much of the expanded code has
 been written to the buf.

expandColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
expandRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
Experiment - Class in ome.xml.model
 
Experiment() - Constructor for class ome.xml.model.Experiment

Default constructor.

Experiment(Element, OMEModel) - Constructor for class ome.xml.model.Experiment

Constructs Experiment recursively from an XML DOM tree.

Experiment(Experiment) - Constructor for class ome.xml.model.Experiment

Copy constructor.

Experimenter - Class in ome.xml.model
 
Experimenter() - Constructor for class ome.xml.model.Experimenter

Default constructor.

Experimenter(Element, OMEModel) - Constructor for class ome.xml.model.Experimenter

Constructs Experimenter recursively from an XML DOM tree.

Experimenter(Experimenter) - Constructor for class ome.xml.model.Experimenter

Copy constructor.

ExperimenterGroup - Class in ome.xml.model
 
ExperimenterGroup() - Constructor for class ome.xml.model.ExperimenterGroup

Default constructor.

ExperimenterGroup(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroup

Constructs ExperimenterGroup recursively from an XML DOM tree.

ExperimenterGroup(ExperimenterGroup) - Constructor for class ome.xml.model.ExperimenterGroup

Copy constructor.

ExperimenterGroupRef - Class in ome.xml.model
 
ExperimenterGroupRef() - Constructor for class ome.xml.model.ExperimenterGroupRef

Default constructor.

ExperimenterGroupRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterGroupRef

Constructs ExperimenterGroupRef recursively from an XML DOM tree.

ExperimenterGroupRef(ExperimenterGroupRef) - Constructor for class ome.xml.model.ExperimenterGroupRef

Copy constructor.

ExperimenterRef - Class in ome.xml.model
 
ExperimenterRef() - Constructor for class ome.xml.model.ExperimenterRef

Default constructor.

ExperimenterRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimenterRef

Constructs ExperimenterRef recursively from an XML DOM tree.

ExperimenterRef(ExperimenterRef) - Constructor for class ome.xml.model.ExperimenterRef

Copy constructor.

ExperimentRef - Class in ome.xml.model
 
ExperimentRef() - Constructor for class ome.xml.model.ExperimentRef

Default constructor.

ExperimentRef(Element, OMEModel) - Constructor for class ome.xml.model.ExperimentRef

Constructs ExperimentRef recursively from an XML DOM tree.

ExperimentRef(ExperimentRef) - Constructor for class ome.xml.model.ExperimentRef

Copy constructor.

ExperimentType - Enum in ome.xml.model.enums
 
ExperimentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for ExperimentType.

ExperimentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler
 
EXPIRED_QT_MSG - Static variable in class loci.formats.gui.LegacyQTTools
 
expiredQT - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating QuickTime for Java has expired.

Exporter - Class in loci.plugins.out

Core logic for the Bio-Formats Exporter ImageJ plugin.

Exporter(LociExporter, ImagePlus) - Constructor for class loci.plugins.out.Exporter
 
EXPOSURE_BIAS_VALUE - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_INDEX - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_MODE - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_MODE_AUTO_BRACKET - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_AUTO_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_MODE_MANUAL_EXPOSURE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureMode" tag.

EXPOSURE_PROGRAM - Static variable in class loci.formats.tiff.IFD
 
EXPOSURE_PROGRAM_ACTION_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_APERTURE_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_CREATIVE_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_LANDSCAPE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MANUAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NORMAL_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_NOT_DEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_PORTRAIT_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_PROGRAM_SHUTTER_PRIORITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "ExposureProgram" tag.

EXPOSURE_TIME - Static variable in class loci.formats.tiff.IFD

EXIF tags.

exposureTime - Variable in class loci.formats.in.BaseZeissReader
 
ExpPtg - Class in loci.poi.hssf.record.formula
 
ExpPtg() - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

ExpPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ExpPtg

Creates new ExpPtg

ExtendedFormatRecord - Class in loci.poi.hssf.record

Title:        Extended Format Record
 Description:  Probably one of the more complex records.

ExtendedFormatRecord() - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructor ExtendedFormatRecord

ExtendedFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtendedFormatRecord

Constructs an ExtendedFormat record and sets its fields appropriately.

ExtensionFileFilter - Class in loci.formats.gui

A file filter based on file extensions, for use with a JFileChooser.

ExtensionFileFilter(String, String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extension.

ExtensionFileFilter(String[], String) - Constructor for class loci.formats.gui.ExtensionFileFilter

Constructs a new filter that accepts the given extensions.

extensions - Variable in class loci.plugins.macro.MacroFunctions
 
External - Class in ome.xml.model
 
External() - Constructor for class ome.xml.model.External

Default constructor.

External(Element, OMEModel) - Constructor for class ome.xml.model.External

Constructs External recursively from an XML DOM tree.

External(External) - Constructor for class ome.xml.model.External

Copy constructor.

externSheet - Variable in class loci.poi.hssf.model.Workbook

Holds the Extern Sheet with references to bound sheets

ExternSheetRecord - Class in loci.poi.hssf.record

Title:        Extern Sheet

ExternSheetRecord() - Constructor for class loci.poi.hssf.record.ExternSheetRecord
 
ExternSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetRecord

Constructs a Extern Sheet record and sets its fields appropriately.

ExternSheetSubRecord - Class in loci.poi.hssf.record

Title:        A sub Record for Extern Sheet

ExternSheetSubRecord() - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

a Constractor for making new sub record

ExternSheetSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExternSheetSubRecord

Constructs a Extern Sheet Sub Record record and sets its fields appropriately.

extHdrFields - Variable in class loci.formats.in.DeltavisionReader

Initialize an array of Extended Header Field structures.

EXTRA_SAMPLES - Static variable in class loci.formats.tiff.IFD
 
EXTRA_SAMPLES_ASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_UNASSOCIATED_ALPHA - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

EXTRA_SAMPLES_UNSPECIFIED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "ExtraSamples" tag.

extract(ListManagedBlock[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

create a list of SmallDocumentBlock's from raw data

extractCoreMetaData() - Method in class loci.formats.tools.AmiraParameters
 
extractText(byte[]) - Static method in class mdbtools.libmdb.Util
 
extractTilePartMarkSeg(short, RandomAccessIO, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

This method extracts a marker segment in a tile-part header and stores
 it into a byte buffer for the second pass.

extraLength - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
 
extraSamples - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The value of the ExtraSamples tag.

ExtSSTInfoSubRecord - Class in loci.poi.hssf.record

Extended SST table info subrecord

ExtSSTInfoSubRecord() - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord

Creates new ExtSSTInfoSubRecord

ExtSSTInfoSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
ExtSSTRecord - Class in loci.poi.hssf.record

Title:        Extended Static String Table

ExtSSTRecord() - Constructor for class loci.poi.hssf.record.ExtSSTRecord
 
ExtSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ExtSSTRecord

Constructs a EOFRecord record and sets its fields appropriately.

exWavelength - Variable in class loci.formats.in.BaseZeissReader
 




F

f - Variable in class mdbtools.libmdb.MdbHandle
 
F_KEY - Static variable in class loci.formats.in.LiFlimReader
 
F_NUMBER - Static variable in class loci.formats.tiff.IFD
 
FacilityManager - Class in jj2000.j2k.util

This class manages common facilities for mutithreading environments, It can
 register different facilities for each thread, and also a default one, so
 that they can be referred by static methods, while possibly having
 different ones for different threads.

FacilityManager() - Constructor for class jj2000.j2k.util.FacilityManager
 
FAKE_EXT - Static variable in class loci.formats.ResourceNamer
 
FakeImage - Class in loci.formats.tools

Generates fake image structures.

FakeImage(Location) - Constructor for class loci.formats.tools.FakeImage
 
FakeReader - Class in loci.formats.in

FakeReader is the file format reader for faking input data.

FakeReader() - Constructor for class loci.formats.in.FakeReader

Constructs a new fake reader.

FALSE - Static variable in class loci.poi.hssf.record.UseSelFSRecord
 
falseColor - Variable in class loci.formats.CoreMetadata

Indicates whether or not we can ignore the color map (if present).

fastCodeSymbols(int, int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

This method performs the coding of the symbol 'bit', using context
 'ctxt', 'n' times, using the MQ-coder speedup mode if possible.

fastDecodeSymbols(int[], int, int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Decodes 'n' symbols from the bit stream using the same context
 'ctxt'.

FATAL - Static variable in class loci.poi.util.POILogger
 
fatalError(SAXParseException) - Method in class loci.common.xml.ParserErrorHandler
 
fatalError(SAXParseException) - Method in class loci.common.xml.ValidationErrorHandler
 
FaxTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the extra tags found in a
 
 TIFF-F (RFC 2036) file.

FCS_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created in FIFO mode
 (setup, data blocks = Decay, FCS, FIDA, FILDA & MCS curves
 for each used routing channel).

fcsDecayCalc - Variable in class loci.formats.in.SDTInfo

Bit 0 = 1 - decay curve calculated.

fcsPoints - Variable in class loci.formats.in.SDTInfo

No of FCS values.

fcsType - Variable in class loci.formats.in.SDTInfo

0 - linear FCS with log binning (100 bins/log)
 when bit 15 = 1 (0x8000) - Multi-Tau FCS
 where bits 14-0 = ktau parameter.

fd - Variable in class mdbtools.libmdb.MdbFile
 
FEI_MAGIC_STRING - Static variable in class loci.formats.in.FEIReader
 
FEIReader - Class in loci.formats.in

FEIReader is the file format reader for FEI and Philips .img files.

FEIReader() - Constructor for class loci.formats.in.FEIReader

Constructs a new FEI reader.

FEITiffReader - Class in loci.formats.in

FEITiffReader is the file format reader for TIFF files produced by various
 FEI software.

FEITiffReader() - Constructor for class loci.formats.in.FEITiffReader
 
fetchBlocks(int) - Method in interface loci.poi.poifs.storage.BlockList

get the blocks making up a particular stream in the list.

fidaPoints - Variable in class loci.formats.in.SDTInfo

No of FIDA values.

fidaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FIDA histogram.

FIELD - Static variable in class loci.formats.ResourceNamer
 
field_1_gridset_flag - Variable in class loci.poi.hssf.record.GridsetRecord
 
field_1_num_args - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
field_1_precision - Variable in class loci.poi.hssf.record.PrecisionRecord
 
field_1_recalcids - Variable in class loci.poi.hssf.record.RecalcIdRecord
 
field_1_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_1_stream_id_offset - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_1_tabids - Variable in class loci.poi.hssf.record.TabIdRecord
 
field_1_zero - Variable in class loci.poi.hssf.record.IndexRecord
 
field_2_first_row - Variable in class loci.poi.hssf.record.IndexRecord
 
field_2_fnc_index - Variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
field_2_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_2_unknown - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_3_last_row_add1 - Variable in class loci.poi.hssf.record.IndexRecord
 
field_3_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_3_unicode_len - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_4_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_4_unicode_flag - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_4_zero - Variable in class loci.poi.hssf.record.IndexRecord
 
field_5_dbcells - Variable in class loci.poi.hssf.record.IndexRecord
 
field_5_ole_classname - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_5_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_6_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_6_stream_id - Variable in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
field_7_reserved - Variable in class loci.poi.hssf.record.formula.ArrayPtg
 
field_pictureData - Variable in class loci.poi.ddf.EscherBlipRecord
 
fifoTyp - Variable in class loci.formats.in.SDTInfo
 
Filament - Class in ome.xml.model
 
Filament() - Constructor for class ome.xml.model.Filament

Default constructor.

Filament(Element, OMEModel) - Constructor for class ome.xml.model.Filament

Constructs Filament recursively from an XML DOM tree.

Filament(Filament) - Constructor for class ome.xml.model.Filament

Copy constructor.

FilamentType - Enum in ome.xml.model.enums
 
FilamentTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilamentType.

FilamentTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilamentTypeEnumHandler
 
fildaPoints - Variable in class loci.formats.in.SDTInfo

No of FILDA values.

fildaTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for FILDA histogram.

file - Variable in class loci.common.NIOInputStream

The file.

file - Variable in class loci.common.RandomAccessInputStream

The file name.

file - Variable in class loci.common.StreamHandle

Name of the open stream.

file() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the current file name

file() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the current file name

File - Class in mdbtools.jdbc2
 
File(String) - Constructor for class mdbtools.jdbc2.File
 
file - Class in mdbtools.libmdb
 
file() - Constructor for class mdbtools.libmdb.file
 
FILE_SOURCE - Static variable in class loci.formats.tiff.IFD
 
FILE_SOURCE_DSC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FileSource" tag.

FILE_TYPE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
FileAnnotation - Class in ome.xml.model
 
FileAnnotation() - Constructor for class ome.xml.model.FileAnnotation

Default constructor.

FileAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.FileAnnotation

Constructs FileAnnotation recursively from an XML DOM tree.

FileAnnotation(FileAnnotation) - Constructor for class ome.xml.model.FileAnnotation

Copy constructor.

FileBitstreamReaderAgent - Class in jj2000.j2k.codestream.reader

This class reads the bit stream (with the help of HeaderDecoder for tile
 headers and PktDecoder for packets header and body) and retrives location
 of all code-block's codewords.

FileBitstreamReaderAgent(HeaderDecoder, RandomAccessIO, DecoderSpecs, J2KImageReadParamJava, boolean, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Reads all tiles headers and keep offset of their first
 packet.

FileChannelImageInputStream - Class in com.sun.media.imageio.stream

A class which implements ImageInputStream using a
 FileChannel as the eventual data source.

FileChannelImageInputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageInputStream

Constructs a FileChannelImageInputStream from a
 FileChannel.

FileChannelImageOutputStream - Class in com.sun.media.imageio.stream

A class which implements ImageOutputStream using a
 FileChannel as the eventual data destination.

FileChannelImageOutputStream(FileChannel) - Constructor for class com.sun.media.imageio.stream.FileChannelImageOutputStream

Constructs a FileChannelImageOutputStream from a
 FileChannel.

FileCodestreamWriter - Class in jj2000.j2k.codestream.writer

This class implements a CodestreamWriter for Java streams.

FileCodestreamWriter(File, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file 'file' for writing the bit stream, using the 'he' header
 encoder.

FileCodestreamWriter(String, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Opens the file named 'fname' for writing the bit stream, using the 'he'
 header encoder.

FileCodestreamWriter(OutputStream, int) - Constructor for class jj2000.j2k.codestream.writer.FileCodestreamWriter

Uses the output stream 'os' for writing the bit stream, using the 'he'
 header encoder.

FileFormatBoxes - Interface in jj2000.j2k.fileformat

This class contains all the markers used in the JPEG 2000 Part I file format

FileFormatReader - Class in jj2000.j2k.fileformat.reader

This class reads the file format wrapper that may or may not exist around a
 valid JPEG 2000 codestream.

FileFormatReader(RandomAccessIO, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.reader.FileFormatReader

The constructor of the FileFormatReader

FileFormatWriter - Class in jj2000.j2k.fileformat.writer

This class writes the file format wrapper that may or may not exist around
 a valid JPEG 2000 codestream.

FileFormatWriter(File, ImageOutputStream, int, int, int, int[], int, ColorModel, SampleModel, J2KMetadata) - Constructor for class jj2000.j2k.fileformat.writer.FileFormatWriter

The constructor of the FileFormatWriter.

fileGroupOption(String) - Method in class loci.formats.FormatReader
 
fileGroupOption(String) - Method in interface loci.formats.IFormatReader

Returns an int indicating that we cannot, must, or might group the files
 in a given dataset.

fileGroupOption(String) - Method in class loci.formats.ImageReader
 
fileGroupOption(String) - Method in class loci.formats.in.AFIReader
 
fileGroupOption(String) - Method in class loci.formats.in.AnalyzeReader
 
fileGroupOption(String) - Method in class loci.formats.in.APLReader
 
fileGroupOption(String) - Method in class loci.formats.in.BDReader
 
fileGroupOption(String) - Method in class loci.formats.in.BioRadReader
 
fileGroupOption(String) - Method in class loci.formats.in.BrukerReader
 
fileGroupOption(String) - Method in class loci.formats.in.CellomicsReader
 
fileGroupOption(String) - Method in class loci.formats.in.CellSensReader
 
fileGroupOption(String) - Method in class loci.formats.in.CellVoyagerReader
 
fileGroupOption(String) - Method in class loci.formats.in.DicomReader
 
fileGroupOption(String) - Method in class loci.formats.in.FlexReader
 
fileGroupOption(String) - Method in class loci.formats.in.FujiReader
 
fileGroupOption(String) - Method in class loci.formats.in.FV1000Reader
 
fileGroupOption(String) - Method in class loci.formats.in.HitachiReader
 
fileGroupOption(String) - Method in class loci.formats.in.ICSReader
 
fileGroupOption(String) - Method in class loci.formats.in.ImagicReader
 
fileGroupOption(String) - Method in class loci.formats.in.InCellReader
 
fileGroupOption(String) - Method in class loci.formats.in.L2DReader
 
fileGroupOption(String) - Method in class loci.formats.in.LeicaReader
 
fileGroupOption(String) - Method in class loci.formats.in.MetamorphReader
 
fileGroupOption(String) - Method in class loci.formats.in.MIASReader
 
fileGroupOption(String) - Method in class loci.formats.in.MicromanagerReader
 
fileGroupOption(String) - Method in class loci.formats.in.NDPIReader
 
fileGroupOption(String) - Method in class loci.formats.in.NDPISReader
 
fileGroupOption(String) - Method in class loci.formats.in.NiftiReader
 
fileGroupOption(String) - Method in class loci.formats.in.NRRDReader
 
fileGroupOption(String) - Method in class loci.formats.in.OMETiffReader
 
fileGroupOption(String) - Method in class loci.formats.in.OperettaReader
 
fileGroupOption(String) - Method in class loci.formats.in.PerkinElmerReader
 
fileGroupOption(String) - Method in class loci.formats.in.PrairieReader
 
fileGroupOption(String) - Method in class loci.formats.in.ScanrReader
 
fileGroupOption(String) - Method in class loci.formats.in.ScreenReader
 
fileGroupOption(String) - Method in class loci.formats.in.SVSReader
 
fileGroupOption(String) - Method in class loci.formats.in.TCSReader
 
fileGroupOption(String) - Method in class loci.formats.in.TillVisionReader
 
fileGroupOption(String) - Method in class loci.formats.in.TrestleReader
 
fileGroupOption(String) - Method in class loci.formats.in.VisitechReader
 
fileGroupOption(String) - Method in class loci.formats.in.ZeissLSMReader
 
fileGroupOption(String) - Method in class loci.formats.in.ZeissTIFFReader
 
fileGroupOption(String) - Method in class loci.formats.ReaderWrapper
 
fileGroupOption(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
FileHandle - Class in loci.common

A wrapper for RandomAccessFile that implements the IRandomAccess interface.

FileHandle(File, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and
 optionally to write to, the file specified by the File argument.

FileHandle(String, String) - Constructor for class loci.common.FileHandle

Creates a random access file stream to read from, and
 optionally to write to, a file with the specified name.

FileHandleTest - Class in loci.tests.testng

Checks that no file handles are open after closing a reader.

FileHandleTest() - Constructor for class loci.tests.testng.FileHandleTest
 
FileInfo - Class in loci.formats

Encompasses basic metadata about a file.

FileInfo() - Constructor for class loci.formats.FileInfo
 
filename - Variable in class loci.common.NIOInputStream

The file name.

filename - Variable in class loci.formats.FileInfo

Absolute path to this file.

filename - Variable in class loci.formats.gui.ImageViewer
 
filename - Variable in class loci.formats.tiff.TiffSaver

Output filename.

filename - Variable in class mdbtools.libmdb.MdbFile
 
FILENAME_FORMAT - Static variable in class loci.common.DateTools

Human readable timestamp filename string

FilePassRecord - Class in loci.poi.hssf.record

Title:        File Pass Record

FilePassRecord() - Constructor for class loci.poi.hssf.record.FilePassRecord
 
FilePassRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FilePassRecord

Constructs a FILEPASS record and sets its fields appropriately.

FilePattern - Class in loci.formats

FilePattern is a collection of methods for handling file patterns, a way of
 succinctly representing a collection of files meant to be part of the same
 data series.

FilePattern(Location) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given file as a template.

FilePattern(String, String) - Constructor for class loci.formats.FilePattern

Creates a pattern object using the given
 filename and directory path as a template.

FilePattern(String) - Constructor for class loci.formats.FilePattern

Creates a pattern object for files with the given pattern string.

FilePatternBlock - Class in loci.formats

FilePatternBlock represents a single block in a FilePattern.

FilePatternBlock(String) - Constructor for class loci.formats.FilePatternBlock
 
FilePatternDialog - Class in loci.plugins.in

Bio-Formats Importer file pattern dialog box.

FilePatternDialog(ImportProcess) - Constructor for class loci.plugins.in.FilePatternDialog

Creates a file pattern dialog for the Bio-Formats Importer.

fileReader - Variable in class loci.formats.gui.ImageViewer

Reader for files on disk.

files - Variable in class loci.formats.in.LeicaReader

Array of image file names.

files - Variable in class loci.formats.in.PerkinElmerReader

List of files to open.

files - Variable in class loci.formats.in.ZeissZVIReader
 
fileSave - Variable in class loci.formats.gui.ImageViewer
 
FileSharingRecord - Class in loci.poi.hssf.record

Title:        FileSharing

FileSharingRecord() - Constructor for class loci.poi.hssf.record.FileSharingRecord
 
FileSharingRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FileSharingRecord

Constructs a FileSharing record and sets its fields appropriately.

FileStitcher - Class in loci.formats

Logic to stitch together files with similar names.

FileStitcher() - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher around a new image reader.

FileStitcher(IFormatReader) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

FileStitcher(IFormatReader, boolean) - Constructor for class loci.formats.FileStitcher

Constructs a FileStitcher with the given reader.

filesystem - Variable in class loci.poi.POIDocument

The open POIFS FileSystem that contains our document

filetimeToDate(int, int) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

filetimeToDate(long) - Static method in class loci.poi.hpsf.Util

Converts a Windows FILETIME into a Date.

FileTypeBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent a File Type Box of JPEG JP2 file
  format.

FileTypeBox(int, int, int[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided brand, minor
  version and compatibility list.

FileTypeBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from the provided byte array.

FileTypeBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Constructs a FileTypeBox from
  org.w3c.dom.Node.

fileView - Variable in class loci.formats.gui.ImageViewer
 
fileWriter - Variable in class loci.formats.gui.ImageViewer

Writer for files on disk.

fill() - Method in class loci.plugins.util.RecordedImageProcessor
 
fill(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor
 
FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
fill(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fill(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fill(List, int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock

fill out a List of SmallDocumentBlocks so that it fully occupies
 a set of big blocks

fill3DRect(int, int, int, int, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
FILL__ANGLE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__BACKOPACITY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__CRMOD - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__DZTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLBACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLCOLOR - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLED - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLOPACITY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FILLTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__FOCUS - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__HEIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__HITTESTFILL - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__NOFILLHITTEST - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__ORIGINX - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__ORIGINY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__PATTERNTEXTURE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTLEFT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTRIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__RECTTOP - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHADECOLORS - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHADEPRESET - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHADETYPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHAPE - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHAPEORIGINX - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__SHAPEORIGINY - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TOBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TOLEFT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TORIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__TOTOP - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__USERECT - Static variable in class loci.poi.ddf.EscherProperties
 
FILL__WIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
FILL_ORDER - Static variable in class loci.formats.tiff.IFD
 
FILL_ORDER_LEFT_TO_RIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

FILL_ORDER_RIGHT_TO_LEFT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "FillOrder" tag.

fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillArc(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fillBasedOnBands(int, boolean, short[], short[], short[]) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Fills the channel definitions into the arrays based on the number
  of components and isPremultiplied.

fillBits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

EOL padding flag: 1 if fill bits have been added before an EOL such
 that the EOL ends on a byte boundary, 0 otherwise.

filled - Variable in class loci.formats.ChannelFiller

Whether to fill in the indices.

fillField(RecordInputStream) - Method in interface loci.poi.hssf.record.CustomField

Populates this fields data from the byte array passed in.

fillField(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataFormulaField
 
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBitmapBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBlipWMFRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherBSERecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherChildAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientAnchorRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherClientDataRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherContainerRecord
 
fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDggRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherDgRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherMetafileBlip

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherOptRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherPictBlip

This method deserializes the record from a byte array.

fillFields(byte[], EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

Delegates to fillFields(byte[], int, EscherRecordFactory)

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherRecord

The contract of this method is to deserialize an escher record including
 it's children.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpgrRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherSpRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.EscherTextboxRecord

This method deserializes the record from a byte array.

fillFields(byte[], int, EscherRecordFactory) - Method in class loci.poi.ddf.UnknownEscherRecord

This method deserializes the record from a byte array.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

You never fill an aggregate

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AreaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisLineFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisOptionsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisParentRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.AxisUsedRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BackupRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BarRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BeginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BlankRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BOFRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BookBoolRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoolErrRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BottomMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.BoundSheetRecord

UTF8:
        sid + len + bof + flags + len(str) + unicode +   str
         2  +  2  +  4  +   2   +    1     +    1    + len(str)

        UNICODE:
        sid + len + bof + flags + len(str) + unicode +   str
         2  +  2  +  4  +   2   +    1     +    1    + 2 * len(str)

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcCountRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CalcModeRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ChartRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CodepageRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ColumnInfoRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ContinueRecord

Fill the fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.CountryRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DataFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DateWindow1904Record
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DBCellRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultColWidthRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DeltaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DimensionsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DrawingRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.DSFRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EndSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.EOFRecord
 
fillFields(byte[], short, int) - Method in class loci.poi.hssf.record.EscherAggregate

Unused since this is an aggregate record.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtendedFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExternSheetSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ExtSSTRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FilePassRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FileSharingRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FnGroupCountRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontBasisRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FontRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FooterRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FormulaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.FrameRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GridsetRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.GutsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HCenterRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HeaderRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.HideObjRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceEndRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.InterfaceHdrRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.IterationRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LeftMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LegendRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LineFormatRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.LinkedDataRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MergeCellsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MMSRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulBlankRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.MulRKRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NameRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Read the record data from the supplied RecordInputStream

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.NumberRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectLinkRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjectProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ObjRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PageBreakRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaletteRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PaneRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PasswordRev4Record
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotAreaRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PlotGrowthRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrecisionRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintGridlinesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintHeadersRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.PrintSetupRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectionRev4Record
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RecalcIdRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.Record

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefModeRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RefreshAllRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RightMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RKRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.RowRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SaveRecalcRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ScenarioProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SCLRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SelectionRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesIndexRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesLabelsRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesListRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesTextRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SharedFormulaRecord

Shared formulas are to treated like unknown records, and as a result d

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SheetPropertiesRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SSTRecord

Fill the fields from the data

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StringRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.StyleRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.SupBookRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TabIdRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextObjectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TextRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TickRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.TopMarginRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnicodeString
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnitsRecord
 
fillFields(byte[], short) - Method in class loci.poi.hssf.record.UnknownRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UnknownRecord

called by the constructor, should set class level fields.

fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.UseSelFSRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.ValueRangeRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.VCenterRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowOneRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WindowTwoRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteAccessRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WriteProtectRecord
 
fillFields(RecordInputStream) - Method in class loci.poi.hssf.record.WSBoolRecord
 
fillInIFD(IFD) - Method in class loci.formats.tiff.TiffParser

Fill in IFD entries that are stored at an arbitrary offset.

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader
 
fillMetadataPass1(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
 
fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass2(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader
 
fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass3(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
 
fillMetadataPass4(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissTIFFReader
 
fillMetadataPass5(MetadataStore) - Method in class loci.formats.in.ZeissZVIReader
 
fillMetadataPass6(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Read and store basic dimensions in model

fillMetadataPass7(MetadataStore) - Method in class loci.formats.in.BaseZeissReader

Store basic dimensions in model

fillOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor

The logical order of bits within a byte.

fillOval(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillOval(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fillPolygon(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor
 
fillPolygon(Polygon) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics

Fills a (closed) polygon, as defined by a pair of arrays, which
  hold the x and y coordinates.

fillPolygon(int[], int[], int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d

Fills a (closed) polygon, as defined by a pair of arrays, which
  hold the x and y coordinates.

fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
fillRoundRect(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
FillRule - Enum in ome.xml.model.enums
 
FillRuleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FillRule.

FillRuleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FillRuleEnumHandler
 
filter(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
Filter - Class in ome.xml.model
 
Filter() - Constructor for class ome.xml.model.Filter

Default constructor.

Filter(Element, OMEModel) - Constructor for class ome.xml.model.Filter

Constructs Filter recursively from an XML DOM tree.

Filter(Filter) - Constructor for class ome.xml.model.Filter

Copy constructor.

FILTER_53 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossless compression.

FILTER_97 - Static variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

The filter for lossy compression.

FILTER_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "component default" specified filters

FILTER_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "main default" specified filters

FILTER_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile and component specific" specified filters

FILTER_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTFilterSpec

The identifier for "tile specific default" specified filters

FilterData - Class in mdbtools.dbengine.tasks

filter a given result set by a given constraint

FilterData(Task, Object, int[]) - Constructor for class mdbtools.dbengine.tasks.FilterData
 
filterMetadata - Variable in class loci.formats.FormatReader

Whether or not to filter out invalid metadata.

FilterMetadata - Class in loci.formats.meta

Source code:
 Trac,
 Gitweb

FilterMetadata(MetadataStore, boolean) - Constructor for class loci.formats.meta.FilterMetadata
 
FilterMetadata - Class in ome.xml.meta

An implementation of MetadataStore that removes unprintable
 characters from metadata values before storing them in a delegate
 MetadataStore.

FilterMetadata(MetadataStore, boolean) - Constructor for class ome.xml.meta.FilterMetadata
 
FilterRef - Class in ome.xml.model
 
FilterRef() - Constructor for class ome.xml.model.FilterRef

Default constructor.

FilterRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterRef

Constructs FilterRef recursively from an XML DOM tree.

FilterRef(FilterRef) - Constructor for class ome.xml.model.FilterRef

Copy constructor.

FilterSet - Class in ome.xml.model
 
FilterSet() - Constructor for class ome.xml.model.FilterSet

Default constructor.

FilterSet(Element, OMEModel) - Constructor for class ome.xml.model.FilterSet

Constructs FilterSet recursively from an XML DOM tree.

FilterSet(FilterSet) - Constructor for class ome.xml.model.FilterSet

Copy constructor.

FilterSetRef - Class in ome.xml.model
 
FilterSetRef() - Constructor for class ome.xml.model.FilterSetRef

Default constructor.

FilterSetRef(Element, OMEModel) - Constructor for class ome.xml.model.FilterSetRef

Constructs FilterSetRef recursively from an XML DOM tree.

FilterSetRef(FilterSetRef) - Constructor for class ome.xml.model.FilterSetRef

Copy constructor.

FilterType - Enum in ome.xml.model.enums
 
FilterTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FilterType.

FilterTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FilterTypeEnumHandler
 
FilterTypes - Interface in jj2000.j2k.wavelet

This interface defines the identifiers for the different types of
 filters that are supported.

finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
 
finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
finalize() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
 
finalize() - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Prints the timing information, if collected, and calls 'finalize' on
 the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Prints the timing information, if collected, and calls 'finalize' on
 the super class.

finalize() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Prints the timing information, if collected, and calls 'finalize' on
 the super class.

finalize() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
findCellComment(Sheet, int, int) - Static method in class loci.poi.hssf.usermodel.HSSFCell

Cell comment finder.

FindCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
 
findColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the first occurance of a given color

findColorIndex(PaletteBuilder.ColorNode, Color) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
findColumnIdx(int, int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
findEdges() - Method in class loci.plugins.util.RecordedImageProcessor
 
findEndOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
findEndOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Sheet

Returns the first occurance of a record matching a particular sid.

findFirstRecordBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the first occurance of a record matching a particular sid.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Sheet

Finds the first occurance of a record matching a particular sid and
 returns it's position.

findFirstRecordLocBySid(short) - Method in class loci.poi.hssf.model.Workbook

Returns the index of a record matching a particular sid.

findFont(short, short, short, String, boolean, boolean, short, byte) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Finds a font that matches the one with the supplied attributes

findNextRecordBySid(short, int) - Method in class loci.poi.hssf.model.Workbook

Returns the next occurance of a record matching a particular sid.

findPaletteEntry(PaletteBuilder.ColorNode, int, byte[], byte[], byte[]) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
findPattern(String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(Location) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(File) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String, String, String[], int[]) - Static method in class loci.formats.FilePattern

Identifies the group pattern from a given file within that group.

findPattern(String[]) - Static method in class loci.formats.FilePattern

Generate a pattern from a list of file names.

findPattern(String) - Method in class loci.formats.FileStitcher
 
findPatterns(String) - Method in class loci.formats.FileStitcher

Finds the file pattern for the given ID, based on the state of the file
 stitcher.

findSeriesPatterns(String) - Static method in class loci.formats.FilePattern
 
findSeriesPatterns(String, String, String[]) - Static method in class loci.formats.FilePattern
 
findSheetNameFromExternSheet(short) - Method in class loci.poi.hssf.model.Workbook

finds the sheet name by his extern sheet index

findSimilarColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Finds the closest matching color in the custom palette.

findStartOfColumnOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
findStartOfRowOutlineGroup(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
findString(String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with
 one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.NIOInputStream

Reads a string ending with one of the given terminating
 substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.NIOInputStream

Reads or skips a string ending with one of the given terminating
 substrings, using the specified block size for buffering.

findString(String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with
 one of the given terminating substrings.

findString(int, String...) - Method in class loci.common.RandomAccessInputStream

Reads a string ending with one of the given terminating
 substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in class loci.common.RandomAccessInputStream

Reads or skips a string ending with one of the given terminating
 substrings, using the specified block size for buffering.

FINE_DOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
FINE_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Small fine dots

finish(ImportProcess) - Method in class loci.plugins.in.Importer
 
finishLengthCalculation(int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder

Terminates the calculation of the required length for each coding
 pass.

FIRST_BYPASS_PASS_IDX - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The index of the first "raw" pass, if bypass mode is on.

FIRST_COLOR_INDEX - Static variable in class loci.poi.hssf.record.PaletteRecord

The byte index of the first color

first_data_pg - Variable in class mdbtools.libmdb.MdbTableDef
 
firstDataStream - Variable in class loci.formats.tools.AmiraParameters
 
FitsReader - Class in loci.formats.in

FitsReader is the file format reader for
 Flexible Image Transport System (FITS) images.

FitsReader() - Constructor for class loci.formats.in.FitsReader

Constructs a new FitsReader.

FixedField - Interface in loci.poi.util

behavior of a field at a fixed location within a byte array

FLAG_BACKGROUND - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_CHILD - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_CONNECTOR - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_DELETED - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_FLIPHORIZ - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_FLIPVERT - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_GROUP - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_HASSHAPETYPE - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_HAVEANCHOR - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_HAVEMASTER - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_OLESHAPE - Static variable in class loci.poi.ddf.EscherSpRecord
 
FLAG_PATRIARCH - Static variable in class loci.poi.ddf.EscherSpRecord
 
flags - Variable in class loci.formats.in.SDTInfo

Scan clocks bits 2-0 (frame, line, pixel), rates_read - bit 15.

FLASH - Static variable in class loci.formats.tiff.IFD
 
FLASH_DID_NOT_FIRE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the
 flash did not fire.

FLASH_ENERGY - Static variable in class loci.formats.tiff.IFD
 
FLASH_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the
 flash fired, but the strobe return status is unknown.

FLASH_MASK_FIRED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating that the
 flash fired.

FLASH_MASK_FUNCTION_NOT_PRESENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating no flash function
 present.

FLASH_MASK_MODE_AUTO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating auto mode.

FLASH_MASK_MODE_FLASH_FIRING - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash
 firing mode.

FLASH_MASK_MODE_FLASH_SUPPRESSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating compulsory flash
 suppression mode.

FLASH_MASK_RED_EYE_REDUCTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating red-eye reduction
 supported.

FLASH_MASK_RETURN_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return
 light detected.

FLASH_MASK_RETURN_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A mask to be used with the "Flash" tag, indicating strobe return
 light not detected.

FLASH_PIX_VERSION - Static variable in class loci.formats.tiff.IFD
 
FLASH_STROBE_RETURN_LIGHT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the
 flash fired, and the strobe return light was detected.

FLASH_STROBE_RETURN_LIGHT_NOT_DETECTED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "Flash" tag, indicating that the
 flash fired, but the strobe return light was not detected.

flattenedResolutions - Variable in class loci.formats.FormatReader

Whether or not resolutions are flattened.

flattenHashtables() - Method in class loci.formats.FormatReader
 
flattenIntoHashMap() - Method in class loci.common.IniList

Flattens all of the INI tables into a single HashMap whose keys are
 of the format "[table name] table key".

flbckX - Variable in class loci.formats.in.SDTInfo
 
flbckY - Variable in class loci.formats.in.SDTInfo
 
FLEX - Static variable in class loci.formats.in.FlexReader

Custom IFD entry for Flex XML.

FLEX_SUFFIX - Static variable in class loci.formats.in.FlexReader
 
FlexReader - Class in loci.formats.in

FlexReader is a file format reader for Evotec Flex files.

FlexReader() - Constructor for class loci.formats.in.FlexReader

Constructs a new Flex reader.

FlexReader.FlexHandler - Class in loci.formats.in

SAX handler for parsing XML.

FlexReader.FlexHandler(Vector<String>, Vector<String>, MetadataStore, boolean, int) - Constructor for class loci.formats.in.FlexReader.FlexHandler
 
FlexReader.MeaHandler - Class in loci.formats.in

SAX handler for parsing XML from .mea files.

FlexReader.MeaHandler() - Constructor for class loci.formats.in.FlexReader.MeaHandler
 
FlexReader.ResHandler - Class in loci.formats.in

SAX handler for parsing XML from .res files.

FlexReader.ResHandler() - Constructor for class loci.formats.in.FlexReader.ResHandler
 
FlexWidgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats Flex support.

FlexWidgets() - Constructor for class loci.plugins.config.FlexWidgets
 
FLIM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the fluorescence-lifetime domain.

flipHorizontal() - Method in class loci.plugins.util.RecordedImageProcessor
 
flipVertical() - Method in class loci.plugins.util.RecordedImageProcessor
 
FLOAT - Static variable in class loci.formats.FormatTools

Identifies the FLOAT data type used to store pixel values.

floatsToBytes(float[], boolean) - Static method in class loci.common.DataTools

Translates an array of float values into an array of byte values.

floatToBytes(float, boolean) - Static method in class loci.common.DataTools

Translates the float value into an array of four bytes.

floatValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a float.

FLOW_DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo

For .sdt files created automatically in Continuous Flow mode measurement
 (no setup, only data).

FluoviewReader - Class in loci.formats.in

FluoviewReader is the file format reader for
 Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.

FluoviewReader() - Constructor for class loci.formats.in.FluoviewReader

Constructs a new Fluoview TIFF reader.

flush() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
flush() - Method in class com.sun.media.imageioimpl.common.BitFile
 
flush() - Method in class com.sun.media.imageioimpl.common.LZWCompressor

Indicate to compressor that no more data to go so write out
 any remaining buffered data.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

A null operation as writing is not supported.

flush() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
flush() - Method in interface jj2000.j2k.io.BinaryDataOutput

Any data that has been buffered must be written, and the stream should
 be realigned at the byte level.

flush() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Any data that has been buffered must be written (including
 buffering at the bit level), and the stream should be realigned
 at the byte level.

flush() - Method in class jj2000.j2k.util.ISRandomAccessIO

Does nothing since this class does not implement data output.

flush() - Method in interface jj2000.j2k.util.MsgLogger

Writes any buffered data from the println() method to the device.

flush() - Method in class jj2000.j2k.util.StreamMsgLogger

Writes any buffered data from the print() and println() methods to the
 device.

flush() - Method in class loci.common.RandomAccessOutputStream
 
flush() - Method in class loci.plugins.config.TextAreaWriter

Flushing a TextAreaWriter does nothing .

flush() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream

Flushes this output stream and forces any buffered output bytes
 to be written out.

flushBefore(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
fmt - Variable in class mdbtools.libmdb.MdbHandle
 
FnGroupCountRecord - Class in loci.poi.hssf.record

Title: Function Group Count Record

FnGroupCountRecord() - Constructor for class loci.poi.hssf.record.FnGroupCountRecord
 
FnGroupCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FnGroupCountRecord

Constructs a FnGroupCount record and sets its fields appropriately.

FOCAL_LENGTH - Static variable in class loci.formats.tiff.IFD
 
FOCAL_LENGTH_35MM_FILM - Static variable in class loci.formats.tiff.IFD
 
FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class loci.formats.tiff.IFD
 
FOCAL_PLANE_RESOLUTION_UNIT_CENTIMETER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_INCH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneXResolution" tag.

FOCAL_PLANE_RESOLUTION_UNIT_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "FocalPlaneResolutionUnit" tag.

FOCAL_PLANE_X_RESOLUTION - Static variable in class loci.formats.tiff.IFD
 
FOCAL_PLANE_Y_RESOLUTION - Static variable in class loci.formats.tiff.IFD
 
focusGained(FocusEvent) - Method in class loci.plugins.in.MainDialog

Handles information pane updates when component focus changes.

focusLost(FocusEvent) - Method in class loci.plugins.in.MainDialog
 
font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font.

font(String, String) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font.

FONT_ARIAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont

Arial font

FontBasisRecord - Class in loci.poi.hssf.record

The font basis record stores various font metrics.

FontBasisRecord() - Constructor for class loci.poi.hssf.record.FontBasisRecord
 
FontBasisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontBasisRecord

Constructs a FontBasis record and sets its fields appropriately.

FontDetails - Class in loci.poi.hssf.usermodel

Stores width and height details about a font.

FontDetails(String, int) - Constructor for class loci.poi.hssf.usermodel.FontDetails

Construct the font details with the given name and height.

FontFamily - Enum in ome.xml.model.enums
 
FontFamilyEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontFamily.

FontFamilyEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontFamilyEnumHandler
 
FontIndexRecord - Class in loci.poi.hssf.record

The font index record indexes into the font table for the text record.

FontIndexRecord() - Constructor for class loci.poi.hssf.record.FontIndexRecord
 
FontIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontIndexRecord

Constructs a FontIndex record and sets its fields appropriately.

FontRecord - Class in loci.poi.hssf.record

Title:        Font Record - descrbes a font in the workbook (index = 0-3,5-infinity - skip 4)

FontRecord() - Constructor for class loci.poi.hssf.record.FontRecord
 
FontRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FontRecord

Constructs a Font record and sets its fields appropriately.

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string that represents the change in font size.

fontSize(short) - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string that represents the change in font size.

FontStyle - Enum in ome.xml.model.enums
 
FontStyleEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for FontStyle.

FontStyleEnumHandler() - Constructor for class ome.xml.model.enums.handlers.FontStyleEnumHandler
 
footer - Variable in class loci.poi.hssf.model.Sheet
 
FooterRecord - Class in loci.poi.hssf.record

Title:        Footer Record

FooterRecord() - Constructor for class loci.poi.hssf.record.FooterRecord
 
FooterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FooterRecord

Constructs a FooterRecord record and sets its fields appropriately.

force - Variable in class loci.common.ReflectedUniverse

Deprecated.
Whether to force our way past restrictive access modifiers.

forEachTile(TestTools.TileLoopIteration, int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools

Iterates over every tile in a given pixel buffer based on the over arching
 dimensions and a requested maximum tile width and height.

format - Variable in class loci.formats.FormatHandler

Name of this file format.

format - Variable in class loci.poi.hpsf.PropertySet

Specifies this PropertySet's format.

format(String, Object[]) - Static method in class loci.poi.util.StringUtil

Apply printf() like formatting to a string.

FORMAT_MASK - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
formatDate(String, String) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String, boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[]) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

formatDate(String, String[], boolean) - Static method in class loci.common.DateTools

Formats the given date as an ISO 8601 date.

FormatEntry - Class in loci.plugins.config

A list entry for the configuration window's Formats tab.

FormatEntry(PrintWriter, Object) - Constructor for class loci.plugins.config.FormatEntry
 
FormatException - Exception in loci.formats

FormatException is the exception thrown when something
 goes wrong performing a file format operation.

FormatException() - Constructor for exception loci.formats.FormatException
 
FormatException(String) - Constructor for exception loci.formats.FormatException
 
FormatException(String, Throwable) - Constructor for exception loci.formats.FormatException
 
FormatException(Throwable) - Constructor for exception loci.formats.FormatException
 
FormatFileFilter - Class in loci.formats.gui

A file filter for a biological file format, for use with a JFileChooser.

FormatFileFilter(IFormatReader) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type.

FormatFileFilter(IFormatReader, boolean) - Constructor for class loci.formats.gui.FormatFileFilter

Constructs a new filter that accepts files of the given reader's type,
 allowing the reader to open files only if the allowOpen flag is set.

FormatHandler - Class in loci.formats

Abstract superclass of all biological file format readers and writers.

FormatHandler(String, String) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffix.

FormatHandler(String, String[]) - Constructor for class loci.formats.FormatHandler

Constructs a format handler with the given name and default suffixes.

formatID - Variable in class loci.poi.hpsf.Section

The section's format ID, Section.getFormatID().

formatIterator() - Method in class loci.poi.hssf.record.UnicodeString
 
formatLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

FormatReader - Class in loci.formats

Abstract superclass of all biological file format readers.

FormatReader(String, String) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffix.

FormatReader(String, String[]) - Constructor for class loci.formats.FormatReader

Constructs a format reader with the given name and default suffixes.

FormatReaderTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format readers.

FormatReaderTest(String, float, boolean) - Constructor for class loci.tests.testng.FormatReaderTest
 
FormatReaderTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of
 FormatReaderTest based on the image files found.

FormatReaderTestFactory() - Constructor for class loci.tests.testng.FormatReaderTestFactory
 
FormatRecord - Class in loci.poi.hssf.record

Title:        Format Record

FormatRecord() - Constructor for class loci.poi.hssf.record.FormatRecord
 
FormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormatRecord

Constructs a Format record and sets its fields appropriately.

FORMATS - Static variable in class loci.formats.in.GelReader
 
formats - Variable in class loci.poi.hssf.model.Workbook
 
formatText - Variable in class loci.formats.gui.PreviewPane
 
formatTip - Variable in class loci.formats.gui.PreviewPane
 
FormatTools - Class in loci.formats

A utility class for format reader and writer implementations.

FormatWriter - Class in loci.formats

Abstract superclass of all biological file format writers.

FormatWriter(String, String) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffix.

FormatWriter(String, String[]) - Constructor for class loci.formats.FormatWriter

Constructs a format writer with the given name and default suffixes.

FormatWriterTest - Class in loci.tests.testng

TestNG tester for Bio-Formats file format writers.

FormatWriterTest(String) - Constructor for class loci.tests.testng.FormatWriterTest
 
FormatWriterTestFactory - Class in loci.tests.testng

Factory for scanning a directory structure and generating instances of
 FormatWriterTest based on the image files found.

FormatWriterTestFactory() - Constructor for class loci.tests.testng.FormatWriterTestFactory
 
FORMULA_TYPE_ARRAY - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_CELL - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_CONDFOMRAT - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_NAMEDRANGE - Static variable in class loci.poi.hssf.model.FormulaParser
 
FORMULA_TYPE_SHARED - Static variable in class loci.poi.hssf.model.FormulaParser
 
FormulaParser - Class in loci.poi.hssf.model

This class parses a formula string into a List of tokens in RPN order.

FormulaParser(String, Workbook) - Constructor for class loci.poi.hssf.model.FormulaParser

Create the formula parser, with the string that is to be
  parsed against the supplied workbook.

FormulaRecord - Class in loci.poi.hssf.record

Formula Record.

FormulaRecord() - Constructor for class loci.poi.hssf.record.FormulaRecord

Creates new FormulaRecord

FormulaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FormulaRecord

Constructs a Formula record and sets its fields appropriately.

FormulaRecordAggregate - Class in loci.poi.hssf.record.aggregates

The formula record aggregate is used to join together the formula record and it's
 (optional) string record and (optional) Shared Formula Record (template reads, excel optimization).

FormulaRecordAggregate(FormulaRecord, StringRecord) - Constructor for class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
FormulaViewer - Class in loci.poi.hssf.dev

FormulaViewer - finds formulas in a BIFF8 file and attempts to read them/display
 data from them.

FormulaViewer() - Constructor for class loci.poi.hssf.dev.FormulaViewer

Creates new FormulaViewer

FORW_ICT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Irreversible Component
        Transformation (FORW_ICT).

FORW_RCT - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for the Forward Reversible Component Transformation
        (FORW_RCT).

FORWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
 
ForwardWT - Class in jj2000.j2k.wavelet.analysis

This abstract class represents the forward wavelet transform functional
 block.

ForwardWT(ImgData) - Constructor for class jj2000.j2k.wavelet.analysis.ForwardWT

Initializes this object for the specified number of tiles 'nt' and
 components 'nc'.

ForwCompTransf - Class in jj2000.j2k.image.forwcomptransf

This class apply component transformations to the tiles depending
 on user specifications.

ForwCompTransf(BlkImgDataSrc, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Constructs a new ForwCompTransf object that operates on the
 specified source of image data.

ForwCompTransfSpec - Class in jj2000.j2k.image.forwcomptransf

This class extends CompTransfSpec class in order to hold encoder specific
 aspects of CompTransfSpec.

ForwCompTransfSpec(int, int, byte, AnWTFilterSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.image.forwcomptransf.ForwCompTransfSpec

Constructs a new 'ForwCompTransfSpec' for the specified number of
 components and tiles and the arguments of optName
 option.

ForwWT - Interface in jj2000.j2k.wavelet.analysis

This interface extends the WaveletTransform with the
 specifics of forward wavelet transforms.

ForwWTDataProps - Interface in jj2000.j2k.wavelet.analysis

This interface extends the ImgData interface with methods that are
 necessary for forward wavelet data (i.e.

ForwWTFull - Class in jj2000.j2k.wavelet.analysis

This class implements the ForwardWT with the full-page approach to be used
 either with integer or floating-point filters

ForwWTFull(BlkImgDataSrc, J2KImageWriteParamJava, int, int) - Constructor for class jj2000.j2k.wavelet.analysis.ForwWTFull

Initializes this object with the given source of image data and with
 all the decompositon parameters

fp - Variable in class loci.common.StreamHandle

Current position within the stream.

fp - Variable in class loci.formats.AxisGuesser

File pattern identifying dimensional axis blocks.

fps - Variable in class loci.formats.FormatWriter

Frame rate to use when writing in frames per second, if applicable.

fps - Variable in class loci.formats.gui.ImageViewer
 
fpsSpin - Variable in class loci.plugins.util.DataBrowser
 
FQColumn - Class in mdbtools.dbengine.sql
 
FQColumn(int, int) - Constructor for class mdbtools.dbengine.sql.FQColumn
 
FrameRecord - Class in loci.poi.hssf.record

The frame record indicates whether there is a border around the displayed text of a chart.

FrameRecord() - Constructor for class loci.poi.hssf.record.FrameRecord
 
FrameRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.FrameRecord

Constructs a Frame record and sets its fields appropriately.

FREE_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD
 
FREE_OFFSETS - Static variable in class loci.formats.tiff.IFD
 
freeTree(PaletteBuilder.ColorNode) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
FREQUENCY - Static variable in class loci.formats.FormatTools

Identifies the Frequency dimensional type,
 representing a dimension consisting of frequencies.

fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace
 
fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
fromCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
fromCIEXYZ(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace
 
fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFColorConverter

Converts an RGB triple into the native color space of this
 TIFFColorConverter, and stores the result in the first three
 entries of the result array.

fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace
 
fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
fromRGB(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
 
fromRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
 
fromRGB(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace
 
fromString(String) - Static method in enum ome.xml.model.enums.AcquisitionMode
 
fromString(String) - Static method in enum ome.xml.model.enums.ArcType
 
fromString(String) - Static method in enum ome.xml.model.enums.Binning
 
fromString(String) - Static method in enum ome.xml.model.enums.Compression
 
fromString(String) - Static method in enum ome.xml.model.enums.ContrastMethod
 
fromString(String) - Static method in enum ome.xml.model.enums.Correction
 
fromString(String) - Static method in enum ome.xml.model.enums.DetectorType
 
fromString(String) - Static method in enum ome.xml.model.enums.DimensionOrder
 
fromString(String) - Static method in enum ome.xml.model.enums.ExperimentType
 
fromString(String) - Static method in enum ome.xml.model.enums.FilamentType
 
fromString(String) - Static method in enum ome.xml.model.enums.FillRule
 
fromString(String) - Static method in enum ome.xml.model.enums.FilterType
 
fromString(String) - Static method in enum ome.xml.model.enums.FontFamily
 
fromString(String) - Static method in enum ome.xml.model.enums.FontStyle
 
fromString(String) - Static method in enum ome.xml.model.enums.IlluminationType
 
fromString(String) - Static method in enum ome.xml.model.enums.Immersion
 
fromString(String) - Static method in enum ome.xml.model.enums.LaserMedium
 
fromString(String) - Static method in enum ome.xml.model.enums.LaserType
 
fromString(String) - Static method in enum ome.xml.model.enums.LineCap
 
fromString(String) - Static method in enum ome.xml.model.enums.Marker
 
fromString(String) - Static method in enum ome.xml.model.enums.Medium
 
fromString(String) - Static method in enum ome.xml.model.enums.MicrobeamManipulationType
 
fromString(String) - Static method in enum ome.xml.model.enums.MicroscopeType
 
fromString(String) - Static method in enum ome.xml.model.enums.NamingConvention
 
fromString(String) - Static method in enum ome.xml.model.enums.PixelType
 
fromString(String) - Static method in enum ome.xml.model.enums.Pulse
 
FT_BR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

File Type Fields

ftpIdx - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The index of the first truncation point returned

FujiReader - Class in loci.formats.in

FujiReader is the file format reader for Fuji LAS 3000 datasets.

FujiReader() - Constructor for class loci.formats.in.FujiReader

Constructs a new Fuji reader.

FuncPtg - Class in loci.poi.hssf.record.formula
 
FuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncPtg

Creates new function pointer from a byte array 
 usually called while reading an excel file.

Function - Interface in mdbtools.dbengine.functions

All functions must implement this

functionData - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
FunctionDef - Class in mdbtools.dbengine.sql

A defination of a function,  used in the parse tree

FunctionDef() - Constructor for class mdbtools.dbengine.sql.FunctionDef
 
FuncVarPtg - Class in loci.poi.hssf.record.formula
 
FuncVarPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Creates new function pointer from a byte array 
 usually called while reading an excel file.

FuncVarPtg(String, byte) - Constructor for class loci.poi.hssf.record.formula.FuncVarPtg

Create a function ptg from a string tokenised by the parser

FV1000_MAGIC_STRING_1 - Static variable in class loci.formats.in.FV1000Reader
 
FV1000_MAGIC_STRING_2 - Static variable in class loci.formats.in.FV1000Reader
 
FV1000_SUFFIXES - Static variable in class loci.formats.in.FV1000Reader
 
FV1000Reader - Class in loci.formats.in

FV1000Reader is the file format reader for Fluoview FV 1000 OIB and
 Fluoview FV 1000 OIF files.

FV1000Reader() - Constructor for class loci.formats.in.FV1000Reader

Constructs a new FV1000 reader.





G

GAIN_CONTROL - Static variable in class loci.formats.tiff.IFD
 
GAIN_CONTROL_HIGH_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_HIGH_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_DOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_LOW_GAIN_UP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAIN_CONTROL_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "GainControl" tag.

GAMMA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the third lifting step coefficient

GAMMA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the third lifting step coefficient

gamma(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
gammaBlue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
gammaGreen - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
gammaRed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
GatanDM2Reader - Class in loci.formats.in

GatanDM2Reader is the file format reader for Gatan .dm2 files.

GatanDM2Reader() - Constructor for class loci.formats.in.GatanDM2Reader

Constructs a new Gatan .dm2 reader.

GatanReader - Class in loci.formats.in

GatanReader is the file format reader for Gatan files.

GatanReader() - Constructor for class loci.formats.in.GatanReader

Constructs a new Gatan reader.

gb - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Number of guard bits off all component in the current tile.

gbs - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of guard bits specifications

gcd(int, int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of two
 positive integer numbers.

gcd(int[]) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Greatest Common Divisor (GCD) of several
 positive integer numbers.

GEL_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the gel and blot imaging domain.

GelReader - Class in loci.formats.in

GelReader is the file format reader for
 Molecular Dynamics GEL TIFF files.

GelReader() - Constructor for class loci.formats.in.GelReader

Constructs a new GEL reader.

GENERAL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
generateScreen(int, int, int, int, int) - Method in class loci.formats.tools.FakeImage

Creates a fake SPW file/directory structure.

genericProcessEvents(HSSFRequest, RecordInputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory

Processes a DocumentInputStream into essentially Record events.

GEOMETRY__3DOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST10VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST2VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST3VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST4VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST5VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST6VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST7VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST8VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUST9VALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__ADJUSTVALUE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__BOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__FILLOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__FILLSHADESHAPEOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__GEOTEXTOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__LEFT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__LINEOK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__RIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__SEGMENTINFO - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__SHADOWok - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__SHAPEPATH - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__TOP - Static variable in class loci.poi.ddf.EscherProperties
 
GEOMETRY__VERTICES - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__ALIGNMENTONCURVE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__BOLDFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__CHARBOUNDINGBOX - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__DEFAULTPOINTSIZE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__FONTFAMILYNAME - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__HASTEXTEFFECT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__ITALICFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__KERNCHARACTERS - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__NOMEASUREALONGPATH - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__REVERSEROWORDER - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__ROTATECHARACTERS - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__RTFTEXT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__SCALETEXTONPATH - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__SHADOWFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__SMALLCAPSFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__STRETCHCHARHEIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__STRETCHTOFITSHAPE - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__STRIKETHROUGHFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__TEXTSPACING - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__TIGHTORTRACK - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__UNDERLINEFONT - Static variable in class loci.poi.ddf.EscherProperties
 
GEOTEXT__UNICODE - Static variable in class loci.poi.ddf.EscherProperties
 
GeoTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff

A class representing the tags found in a GeoTIFF IFD.

get(int) - Method in class loci.formats.codec.ByteVector
 
get(int) - Static method in enum loci.formats.codec.CompressionType

Retrieves the compression by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000BoxType

Retrieves the box type by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker

Retrieves the segment marker by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.tiff.IFDType

Retrieves a IFD type by reverse lookup of its "code".

get(int) - Method in class loci.formats.tiff.OnDemandLongArray
 
get(int) - Static method in enum loci.formats.tiff.PhotoInterp

Retrieves a photometric interpretation by reverse lookup of its "code".

get(int) - Static method in enum loci.formats.tiff.TiffCompression

Retrieves a TIFF compression instance by code.

get(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
get(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
get(String) - Method in class loci.poi.hpsf.CustomProperties

Gets a named value from the custom properties.

get(long) - Method in class loci.poi.hpsf.wellknown.PropertyIDMap

Gets the ID string for an ID from the PropertyIDMap.

get(byte[]) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the PropertyIDMap for a given section format
 ID.

get(Object) - Method in class loci.poi.hpsf.wellknown.SectionIDMap

Deprecated.
Use SectionIDMap.get(byte[]) instead!


get(int) - Method in class loci.poi.hssf.model.WorkbookRecordList
 
get(Object) - Method in class loci.poi.util.BinaryTree

Returns the value to which this map maps the specified
 key.

get() - Method in class loci.poi.util.ByteField

get the ByteField's current value

get(int) - Method in class loci.poi.util.DoubleList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.DoubleList2d
 
get() - Method in class loci.poi.util.IntegerField

get the IntegerField's current value

get(int) - Method in class loci.poi.util.IntList

Returns the element at the specified position in this list.

get(int, int) - Method in class loci.poi.util.IntList2d
 
get(int) - Method in class loci.poi.util.IntMapper
 
get(int, int) - Method in class loci.poi.util.List2d
 
get() - Method in class loci.poi.util.LongField

get the LongField's current value

get() - Method in class loci.poi.util.ShortField

get the ShortField's current value

get(int) - Method in class loci.poi.util.ShortList

Returns the element at the specified position in this list.

get(String) - Method in class loci.tests.testng.ConfigurationTree

Retrieves the Configuration object corresponding to the given file.

get(int) - Method in interface mdbtools.dbengine.Data

get the data at a certain column

get(int) - Method in class mdbtools.dbengine.MemoryData

get the data at a certain column

get123Prefix() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get some old holdover from lotus 123.

get16BitLookupTable() - Method in class loci.formats.ChannelFiller
 
get16BitLookupTable() - Method in class loci.formats.DelegateReader
 
get16BitLookupTable() - Method in class loci.formats.FileStitcher
 
get16BitLookupTable() - Method in class loci.formats.FormatReader
 
get16BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 16-bit color lookup table associated with
 the most recently opened image.

get16BitLookupTable() - Method in class loci.formats.ImageReader
 
get16BitLookupTable() - Method in class loci.formats.in.BaseZeissReader
 
get16BitLookupTable() - Method in class loci.formats.in.DicomReader
 
get16BitLookupTable() - Method in class loci.formats.in.FakeReader
 
get16BitLookupTable() - Method in class loci.formats.in.FV1000Reader
 
get16BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader
 
get16BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.InCellReader
 
get16BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader
 
get16BitLookupTable() - Method in class loci.formats.in.JPXReader
 
get16BitLookupTable() - Method in class loci.formats.in.LeicaReader
 
get16BitLookupTable() - Method in class loci.formats.in.LIFReader
 
get16BitLookupTable() - Method in class loci.formats.in.MIASReader
 
get16BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.NativeND2Reader
 
get16BitLookupTable() - Method in class loci.formats.in.OMETiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.PDSReader
 
get16BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader
 
get16BitLookupTable() - Method in class loci.formats.in.ScreenReader
 
get16BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader
 
get16BitLookupTable() - Method in class loci.formats.in.TCSReader
 
get16BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader
 
get16BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader
 
get16BitLookupTable() - Method in class loci.formats.in.ZipReader
 
get16BitLookupTable() - Method in class loci.formats.ReaderWrapper
 
get26Sys(String) - Method in class loci.poi.hssf.util.RangeAddress
 
get8BitLookupTable() - Method in class loci.formats.ChannelFiller
 
get8BitLookupTable() - Method in class loci.formats.DelegateReader
 
get8BitLookupTable() - Method in class loci.formats.FileStitcher
 
get8BitLookupTable() - Method in class loci.formats.FormatReader
 
get8BitLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Converts an IndexColorModel to a 2D byte array.

get8BitLookupTable() - Method in interface loci.formats.IFormatReader

Gets the 8-bit color lookup table associated with
 the most recently opened image.

get8BitLookupTable() - Method in class loci.formats.ImageReader
 
get8BitLookupTable() - Method in class loci.formats.in.AmiraReader
 
get8BitLookupTable() - Method in class loci.formats.in.APNGReader
 
get8BitLookupTable() - Method in class loci.formats.in.AVIReader
 
get8BitLookupTable() - Method in class loci.formats.in.BaseZeissReader
 
get8BitLookupTable() - Method in class loci.formats.in.BioRadReader
 
get8BitLookupTable() - Method in class loci.formats.in.BMPReader
 
get8BitLookupTable() - Method in class loci.formats.in.DicomReader
 
get8BitLookupTable() - Method in class loci.formats.in.FakeReader
 
get8BitLookupTable() - Method in class loci.formats.in.GIFReader
 
get8BitLookupTable() - Method in class loci.formats.in.ImarisHDFReader
 
get8BitLookupTable() - Method in class loci.formats.in.ImprovisionTiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.InCellReader
 
get8BitLookupTable() - Method in class loci.formats.in.IPWReader
 
get8BitLookupTable() - Method in class loci.formats.in.JPEG2000Reader
 
get8BitLookupTable() - Method in class loci.formats.in.JPXReader
 
get8BitLookupTable() - Method in class loci.formats.in.KhorosReader
 
get8BitLookupTable() - Method in class loci.formats.in.LeicaReader
 
get8BitLookupTable() - Method in class loci.formats.in.LIFReader
 
get8BitLookupTable() - Method in class loci.formats.in.MIASReader
 
get8BitLookupTable() - Method in class loci.formats.in.MinimalTiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.NativeND2Reader
 
get8BitLookupTable() - Method in class loci.formats.in.OMETiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.OpenlabReader
 
get8BitLookupTable() - Method in class loci.formats.in.PCXReader
 
get8BitLookupTable() - Method in class loci.formats.in.PerkinElmerReader
 
get8BitLookupTable() - Method in class loci.formats.in.PictReader
 
get8BitLookupTable() - Method in class loci.formats.in.PSDReader
 
get8BitLookupTable() - Method in class loci.formats.in.ScreenReader
 
get8BitLookupTable() - Method in class loci.formats.in.SlidebookTiffReader
 
get8BitLookupTable() - Method in class loci.formats.in.TargaReader
 
get8BitLookupTable() - Method in class loci.formats.in.TCSReader
 
get8BitLookupTable() - Method in class loci.formats.in.ZeissCZIReader
 
get8BitLookupTable() - Method in class loci.formats.in.ZeissLSMReader
 
get8BitLookupTable() - Method in class loci.formats.in.ZipReader
 
get8BitLookupTable() - Method in class loci.formats.ReaderWrapper
 
getA00() - Method in class ome.xml.model.AffineTransform
 
getA01() - Method in class ome.xml.model.AffineTransform
 
getA02() - Method in class ome.xml.model.AffineTransform
 
getA10() - Method in class ome.xml.model.AffineTransform
 
getA11() - Method in class ome.xml.model.AffineTransform
 
getA12() - Method in class ome.xml.model.AffineTransform
 
getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

This method wraps the protected method abortRequested
  to allow the abortions be monitored by J2KReadState.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

This method wraps the protected method abortRequested
  to allow the abortions be monitored by J2KRenderedImage.

getAbortRequest() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

This method wraps the protected method abortRequested
  to allow the abortions be monitored by J2KReadState.

getAbsoluteFile() - Method in class loci.common.Location
 
getAbsolutePath() - Method in class loci.common.Location
 
getAbsoluteTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the absoluteTime associated with this Frame.

getAccessTimeMillis() - Method in class loci.tests.testng.Configuration
 
getAcquisitionDate() - Method in class ome.xml.model.Image
 
getAcquisitionMode(String) - Method in class loci.formats.FormatReader

Retrieves an AcquisitionMode enumeration
 value for the given String.

getAcquisitionMode() - Method in class ome.xml.model.Channel
 
getActiveCellCol() - Method in class loci.poi.hssf.model.Sheet

Returns the active column

getActiveCellCol() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's col

getActiveCellRef() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's reference number

getActiveCellRow() - Method in class loci.poi.hssf.model.Sheet

Returns the active row

getActiveCellRow() - Method in class loci.poi.hssf.record.SelectionRecord

get the active cell's row

getActiveChannels() - Method in class loci.formats.in.PrairieMetadata

Gets the list of active channel indices, in sorted order.

getActivePane() - Method in class loci.poi.hssf.record.PaneRecord

Get the active pane field for the Pane record.

getActivePane() - Method in class loci.poi.hssf.util.PaneInformation

Returns the active pane

getActualNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual number of read bytes.

getActualRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the actual decoding rate in bits per pixel.

getActualSizeOfElements(short) - Static method in class loci.poi.ddf.EscherArrayProperty

Sometimes the element size is stored as a negative number.

getAddMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add menu options (should be 0)

getAddress() - Method in class loci.poi.hssf.util.RangeAddress
 
getAdjustedIndex(int) - Method in class loci.formats.FileStitcher

Gets the local reader index for use with the given image plane.

getAdjustedOrder() - Method in class loci.formats.AxisGuesser

Gets the adjusted dimension order.

getAdtlDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get for diagonal borders?  No idea (its a palette color for the other function
 we didn't know what was?)

getAdtlDiagLineStyle() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the diagonal border line style?  Who the heck ever heard of a diagonal border?

getAdtlFillPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional fill pattern

getAdtlPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the additional palette options bitmask (see individual bit getter methods
 that reference this method)

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getAdvancedSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed to
 open the current series.

getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getAdvancedSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getAdvancedUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getAdvancedUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getAdvancedUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of FileInfo objects representing the files needed
 to open this dataset.

getAdvancedUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getAdvancedUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getAirPressure() - Method in class ome.xml.model.ImagingEnvironment
 
getAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the horizontal alignment of the cell.

getAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of horizontal alignment for the cell

getAlignmentOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the alignment options bitmask.

getAlignROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets alignROI

getAllEmbeddedObjects() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all embedded OLE2 objects from the Workbook.

getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory
 
getAllKnownRecordSIDs() - Static method in class loci.poi.hssf.record.RecordFactory

Deprecated.
 
getAllowedTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns a List containing the allowed
 TIFFTagSet objects.

getAllPictures() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Gets all pictures from the Workbook.

getAlpha(int) - Method in class loci.formats.gui.Index16ColorModel
 
getAlpha(int) - Method in class loci.formats.gui.SignedColorModel
 
getAlpha(Object) - Method in class loci.formats.gui.SignedColorModel
 
getAlpha(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getAlpha(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getAlpha() - Method in class ome.xml.model.primitives.Color

Returns the alpha component of this color.

getAlphas() - Method in class loci.formats.gui.Index16ColorModel

Return the array of alpha color components.

getAlternateExpression() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternate expression evaluation is on

getAlternateExpression() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternate expression evaluation is on

getAlternateFormula() - Method in class loci.poi.hssf.record.WSBoolRecord

whether alternative formula entry is on

getAlternateFormula() - Method in class loci.poi.hssf.usermodel.HSSFSheet

whether alternative formula entry is on

getAlternateMD5() - Method in class loci.tests.testng.Configuration
 
getAmplificationGain() - Method in class ome.xml.model.Detector
 
getAnchor() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
getAnchorHeightInPoints(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Calculates the height of a client anchor in points.

getAnchorId() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the anchor id field for the ObjectLink record.

getAnchorType() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor

Gets the anchor type

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis
 filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass analysis filter.

getAnHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass analysis
 filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis
 filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass analysis filter.

getAnHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass analysis
 filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis
 filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass analysis
 filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass analysis filter.

getAnLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass analysis
 filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis
 filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass analysis filter.

getAnLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass analysis
 filter.

getAnnotator() - Method in class ome.xml.model.Annotation
 
getAnSubbandTree(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns a reference to the root of subband tree structure representing
 the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns a reference to the subband tree structure representing the
 subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns a reference to the subband tree structure representing the
 subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns a reference to the root of subband tree structure representing
 the subband decomposition for the specified tile-component.

getAnSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns a reference to the subband tree structure representing the
 subband decomposition for the specified tile-component of the source.

getApplicationName() - Method in class loci.poi.hpsf.SummaryInformation

Returns the application name (or null).

getApproximationAccuracy() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns ApproximationAccuracy.

getArabic() - Method in class loci.poi.hssf.record.WindowTwoRecord

is this arabic?

getArcID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getArcID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getArcID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getArcID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getArcLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getArcLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getArcLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getArcLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getArcManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getArcManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getArcManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getArcManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getArcModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getArcModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getArcModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getArcModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getArcPower(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getArcPower(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getArcPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getArcPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getArcSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getArcSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getArcSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getArcSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getArcType(String) - Method in class loci.formats.FormatReader

Retrieves an ArcType enumeration
 value for the given String.

getArcType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getArcType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getArcType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getArcType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getArea() - Method in class loci.poi.hssf.util.Region
 
getAreaAt(int) - Method in class loci.poi.hssf.record.MergeCellsRecord

return the MergedRegion at the given index.

getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaAPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNAPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaNVPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getAreaPtgName() - Method in class loci.poi.hssf.record.formula.AreaVPtg
 
getAreaReference(Workbook) - Method in class loci.poi.hssf.record.NameRecord

gets the reference , the area only (range)

getArgument() - Method in class mdbtools.dbengine.sql.FunctionDef
 
getArray(String, int[], int[]) - Method in interface loci.formats.services.NetCDFService

Retrieves an HDF path's values.

getArray(String, int[], int[]) - Method in class loci.formats.services.NetCDFServiceImpl
 
getAsBytes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the data as an uninterpreted array of
 bytes.

getAsChars() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SHORT data as an array of
 chars (unsigned 16-bit integers).

getAsDouble(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a double.

getAsDoubles() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_DOUBLE data as an array of
 doubles (64-bit floating-point values).

getAsFloat(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a float.

getAsFloats() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_FLOAT data as an array of
 floats (32-bit floating-point values).

getAsInt(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as an int.

getAsInts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SLONG data as an array of
 ints (signed 32-bit integers).

getAsLong(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns data in any format as a long.

getAsLongs() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_LONG or
 TIFF_IFD_POINTER data as an array of
 longs (signed 64-bit integers).

getAsMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Converts the directory to a metadata object.

getAsNativeNode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the TIFFField as a node named either
 "TIFFField" or "TIFFIFD" as described in the
 TIFF native image metadata specification.

getAsRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_RATIONAL data item as a two-element array
 of ints.

getAsRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_RATIONAL data as an array of
 2-element arrays of longs.

getAsShorts() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SSHORT data as an array of
 shorts (signed 16-bit integers).

getAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the association which associates a color channel to a color
  component in the color space of the image.

getAsSRational(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_SRATIONAL data item as a
 two-element array of ints.

getAsSRationals() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns TIFFTag.TIFF_SRATIONAL data as an array of
 2-element arrays of ints.

getAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a TIFFTag.TIFF_ASCII value as a
 String.

getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
 
getAsTree(String) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getAttenuation() - Method in class ome.xml.model.LightSourceSettings
 
getAttribute(Node, String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Extracts the value of the attribute from name.

getAttribute(Node, String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getAttributeDataType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeDefaultValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeDescription(String, String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeEnumerations(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeList() - Method in interface loci.formats.services.NetCDFService

Retrieves an exhaustive list of the HDF paths for all attributes in the
 HDF document.

getAttributeList() - Method in class loci.formats.services.NetCDFServiceImpl
 
getAttributeListMaxLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeListMinLength(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeMaxValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeMinValue(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributeNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAttributes() - Method in class loci.poi.hssf.record.FontRecord

get the font attributes (see individual bit getters that reference this method)

getAttributeValue(String) - Method in interface loci.formats.services.NetCDFService

Retrieves an attribute's value.

getAttributeValue(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getAttributeValueType(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the author (or null).

getAuthor() - Method in class loci.poi.hssf.record.NoteRecord

Name of the original comment author

getAuthor() - Method in class loci.poi.hssf.usermodel.HSSFComment

Name of the original comment author

getAutobreaks() - Method in class loci.poi.hssf.record.WSBoolRecord

show automatic page breaks or not

getAutobreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

show automatic page breaks or not

getAutoContinue() - Method in class loci.poi.hssf.record.RecordInputStream
 
getAutoscaleInfo() - Method in class loci.plugins.in.ImporterOptions
 
getAutoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
 
getAutoThreshold(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
 
getAxisCount(int) - Method in class loci.formats.AxisGuesser

Gets the number of axes in the pattern of the given type.

getAxisCountC() - Method in class loci.formats.AxisGuesser

Gets the number of C axes in the pattern.

getAxisCountS() - Method in class loci.formats.AxisGuesser

Gets the number of S axes in the pattern.

getAxisCountT() - Method in class loci.formats.AxisGuesser

Gets the number of T axes in the pattern.

getAxisCountZ() - Method in class loci.formats.AxisGuesser

Gets the number of Z axes in the pattern.

getAxisGuesser() - Method in class loci.formats.FileStitcher

Gets the axis guesser object used to guess
 which dimensional axes are which.

getAxisType(String) - Static method in class loci.formats.AxisGuesser

Returns a best guess of the given label's axis type.

getAxisType() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Get the axis type field for the AxisLineFormat record.

getAxisType() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the axis type field for the AxisParent record.

getAxisType() - Method in class loci.poi.hssf.record.AxisRecord

Get the axis type field for the Axis record.

getAxisTypes() - Method in class loci.formats.AxisGuesser

Gets the guessed axis type for each dimensional block.

getAxisTypes() - Method in class loci.formats.FileStitcher

Gets the axis type for each dimensional block.

getBackcolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the backcolor index field for the AreaFormat record.

getBackground() - Method in class loci.poi.hssf.record.TickRecord

Get the background field for the Tick record.

getBackground() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getBackground() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getBackgroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the background color field for the AreaFormat record.

getBackgroundValue() - Method in class loci.plugins.util.RecordedImageProcessor
 
getBackup() - Method in class loci.poi.hssf.record.BackupRecord

get the backup flag

getBackupFlag() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

determine whether the Excel GUI will backup the workbook when saving.

getBackuppos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getBackupRecord() - Method in class loci.poi.hssf.model.Workbook

Returns the position of the backup record.

getBadFontHeight() - Method in class loci.poi.hssf.record.RowRecord

get whether the font and row height are not compatible

getBandSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getBarSpace() - Method in class loci.poi.hssf.record.BarRecord

Get the bar space field for the Bar record.

getBaseReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getBaseUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the base unit field for the AxisOptions record.

getBATArray() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getBestIndex(Color) - Method in class loci.plugins.util.RecordedImageProcessor
 
getBigBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument
 
getBigBlockSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.BATBlock
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.DocumentBlock
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.HeaderBlockWriter
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.PropertyBlock
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlockList
 
getBigBlockSize() - Method in class loci.poi.poifs.storage.SmallDocumentBlock
 
getBigEndian() - Method in class ome.xml.model.BinData
 
getBigEndian() - Method in class ome.xml.model.Pixels
 
getBinaryFile() - Method in class ome.xml.model.FileAnnotation
 
getBinaryFileFileName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBinaryFileFileName(int) - Method in class ome.xml.meta.DummyMetadata
 
getBinaryFileFileName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBinaryFileFileName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBinaryFileMIMEType(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBinaryFileMIMEType(int) - Method in class ome.xml.meta.DummyMetadata
 
getBinaryFileMIMEType(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBinaryFileMIMEType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBinaryFileSize(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBinaryFileSize(int) - Method in class ome.xml.meta.DummyMetadata
 
getBinaryFileSize(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBinaryFileSize(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBinaryOnly() - Method in class ome.xml.model.OME
 
getBinaryOnlyMetadataFile(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBinaryOnlyMetadataFile(int) - Method in class ome.xml.meta.DummyMetadata
 
getBinaryOnlyMetadataFile(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBinaryOnlyMetadataFile(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBinaryOnlyUUID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBinaryOnlyUUID(int) - Method in class ome.xml.meta.DummyMetadata
 
getBinaryOnlyUUID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBinaryOnlyUUID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBinData() - Method in class ome.xml.model.BinaryFile
 
getBinData(int) - Method in class ome.xml.model.Mask
 
getBinData(int) - Method in class ome.xml.model.Pixels
 
getBinning(String) - Method in class loci.formats.FormatReader

Retrieves an Binning enumeration
 value for the given String.

getBinning() - Method in class loci.formats.in.MetamorphHandler
 
getBinning() - Method in class ome.xml.model.DetectorSettings
 
getBinnings() - Method in class loci.formats.in.ND2Handler
 
getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox

Returns the bit depths for all the image components.

getBitDepth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the bit depth for all the image components.

getBitDepth() - Method in class loci.formats.in.PrairieMetadata

Gets the bitDepth recorded in the configuration.

getBitDepths() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the bit depths for all the color components.

getBitOffset() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getBits(int) - Method in class loci.formats.codec.BitBuffer

Returns an int value representing the value of the bits read from
 the byte array, from the current position.

getBitsPerPixel() - Method in class loci.formats.FileStitcher
 
getBitsPerPixel() - Method in class loci.formats.FormatReader
 
getBitsPerPixel() - Method in interface loci.formats.IFormatReader

Gets the number of valid bits per pixel.

getBitsPerPixel() - Method in class loci.formats.ImageReader
 
getBitsPerPixel() - Method in class loci.formats.ReaderWrapper
 
getBitsPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given
 TIFF IFD.

getBlipRecord() - Method in class loci.poi.ddf.EscherBSERecord
 
getBlipType(byte) - Method in class loci.poi.ddf.EscherBSERecord

Retrieve the string representation given a blip id.

getBlipTypeMacOS() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under MacOS (failure to match this blip type will result in
 Excel converting to this format).

getBlipTypeWin32() - Method in class loci.poi.ddf.EscherBSERecord

The expected blip type under windows (failure to match this blip type will result in
 Excel converting to this format).

getBlock(int) - Method in class loci.formats.FilePattern

Gets the specified numerical block.

getBlock() - Method in class loci.formats.FilePatternBlock
 
getBlockAligned() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the blockAligned flag

getBlocks() - Method in class loci.formats.FilePattern

Gets each numerical block.

getBlocks() - Method in class loci.poi.poifs.storage.RawDataBlockList
 
getBlocks() - Method in class loci.poi.poifs.storage.SmallDocumentBlockList
 
getBlockSize() - Method in class loci.poi.poifs.storage.RawDataBlock
 
getBlue(int) - Method in class loci.formats.gui.Index16ColorModel
 
getBlue(int) - Method in class loci.formats.gui.SignedColorModel
 
getBlue(Object) - Method in class loci.formats.gui.SignedColorModel
 
getBlue(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getBlue(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getBlue() - Method in class loci.poi.ddf.EscherRGBProperty
 
getBlue() - Method in class ome.xml.model.primitives.Color

Returns the blue component of this color.

getBlues() - Method in class loci.formats.gui.Index16ColorModel

Return the array of blue color components.

getBoldWeight() - Method in class loci.poi.hssf.record.FontRecord

get the bold weight for this font (100-1000dec or 0x64-0x3e8).

getBoldweight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the boldness to use

getBooleanAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getBooleanAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getBooleanAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getBooleanAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getBooleanCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a boolean.

getBooleanOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the boolean option with the given key.

getBooleanValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the value for the cell

getBorderBottom() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the bottom border

getBorderBottom() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the bottom border of the cell

getBorderLeft() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the left border

getBorderLeft() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the left border of the cell

getBorderOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the border options bitmask (see the corresponding bit getter methods
 that reference back to this one)

getBorderRight() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the right border

getBorderRight() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the right border of the cell

getBorderTop() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the borderline style for the top border

getBorderTop() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of border to use for the top border of the cell

getBorderType() - Method in class loci.poi.hssf.record.FrameRecord

Get the border type field for the Frame record.

getBottomBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getBottomBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the bottom border

getBoundaryHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary height of the metafile drawing commands

getBoundaryLeft() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the left boundary of the metafile drawing commands

getBoundaryTop() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the top boundary of the metafile drawing commands

getBoundaryWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the boundary width of the metafile drawing commands

getBounds() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a Rectangle indicating the image bounds.

getBounds() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getBounds() - Method in class loci.poi.ddf.EscherPictBlip
 
getBoundWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns the Workbook that this Cell is bound to

getBoxClass(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the Box class for the box with the provided type.

getBranchIndex(Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
getBrand() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the brand of this file type box.

getBreak(short) - Method in class loci.poi.hssf.record.PageBreakRecord

Retrieves the region at the row/column indicated

getBreaksIterator() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getBSERecord(int) - Method in class loci.poi.hssf.model.Workbook
 
getBspos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getBubbleSeriesType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the bubble series type field for the Series record.

getBucketSSTOffset() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getBuffer() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the byte buffer.

getBuffer() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the byte-buffer used to store the codestream header.

getBufferedImage() - Method in class loci.plugins.util.RecordedImageProcessor
 
getBufferLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the number of bytes used in the codestream header's
 buffer.

getBufferSize() - Method in class loci.common.NIOFileHandle

Gets the current buffer size.

getBuild() - Method in class loci.poi.hssf.record.BOFRecord

get the build that wrote this file

getBuildDate(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getBuildYear() - Method in class loci.poi.hssf.record.BOFRecord

Year of the build that wrote this file

getBuiltin() - Method in class loci.poi.hssf.record.StyleRecord

if this is a builtin style get the number of the built in style

getBuiltinFormat(String) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string

getBuiltinFormat(short) - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat
 
getBuiltInName() - Method in class loci.poi.hssf.record.NameRecord

Gets the Built In Name

getBypass() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets bypass

getByte(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer

Returns the byte buffered at the given position in the buffer.

getByteArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

Copy a portion of a byte array

getByteArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the byte array from an IIOMetadataNode.

getByteBuffer() - Method in class loci.common.ByteArrayHandle

Gets the byte buffer backing this handle.

getByteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the byte count or 0 if the DocumentSummaryInformation does not contain a byte count.

getByteElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its byte value from an IIOMetadataNode.

getByteInputBuffer() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the underlying 'ByteInputBuffer' from where the MQ
 coded input bytes are read.

getByteOrder() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getByteOrder() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "byte order"
 field.

getByteOrder() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getByteOrdering() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
 
getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataInput

Returns the endianess (i.e., byte ordering) of the implementing
 class.

getByteOrdering() - Method in interface jj2000.j2k.io.BinaryDataOutput

Returns the endianness (i.e., byte ordering) of the implementing
 class.

getByteOrdering() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the endianess (i.e., byte ordering) of the implementing
 class.

getByteOrdering() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the endianess (i.e., byte ordering) of multi-byte I/O
 operations.

getBytes() - Method in class loci.common.ByteArrayHandle

Gets the byte array backing this FileHandle.

getBytes(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned bytes, one per channel.

getBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Get the bytes from an image, merging the channels as necessary.

getBytes() - Method in class loci.poi.hpsf.ClassID

Gets the bytes making out the class ID.

getBytes() - Method in class loci.poi.hssf.record.formula.Ptg
 
getBytes() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Method getBytes - get the bytes of just the HSSF portions of the XLS file.

getBytesPerElement() - Method in enum loci.formats.tiff.IFDType

Retrieves the number of bytes per element.

getBytesPerPixel(int) - Static method in class loci.formats.FormatTools

Retrieves how many bytes per pixel the current plane or section has.

getBytesPerPixel(String) - Static method in class loci.formats.FormatTools

Retrieves the number of bytes per pixel in the current plane.

getBytesPerPixel(int) - Method in class loci.formats.in.LegacyND2Reader
 
getBytesPerSample() - Method in class loci.formats.tiff.IFD

Retrieves the image's bytes per sample (derived from tag BitsPerSample)
 from this IFD.

getC() - Method in class loci.formats.gui.ImageViewer

Gets the C value of the currently displayed image.

getCache() - Method in class loci.formats.gui.CacheComponent
 
getCache() - Method in class loci.plugins.util.BFVirtualStack
 
getCacheListeners() - Method in class loci.formats.cache.Cache
 
getCacheListeners() - Method in interface loci.formats.cache.CacheReporter

Gets a list of all registered status update listeners.

getCacheListeners() - Method in class loci.formats.cache.CacheStrategy
 
getCacheOfSavedSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the saved size

getCacheOfSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the cache of the metafile size

getCalcMode() - Method in class loci.poi.hssf.record.CalcModeRecord

get the calc mode flag for formulas

getCalibratedMagnification() - Method in class ome.xml.model.Objective
 
getCalibrationTable() - Method in class loci.plugins.util.RecordedImageProcessor
 
getCameraModel() - Method in class loci.formats.in.ND2Handler
 
getCanonicalFile() - Method in class loci.common.Location
 
getCanonicalPath() - Method in class loci.common.Location

Returns the canonical path to this file.

getCategory() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getCategory() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the category (or null).

getCategoryAxisCross() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the category axis cross field for the ValueRange record.

getCategoryDataType() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Get the category data type field for the DefaultDataLabelTextProperties record.

getCategoryDataType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the category data type field for the Series record.

getCategorySpace() - Method in class loci.poi.hssf.record.BarRecord

Get the category space field for the Bar record.

getCausalCXInfo() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets causalCXInfo

getCBegin(int) - Method in class loci.plugins.in.ImporterOptions
 
getCBegin(int) - Method in class loci.plugins.in.ImportProcess
 
getCBlkHeight(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block height:

 
 for the specified tile/component
 for the specified tile
 for the specified component
 default value
 

 The value returned depends on the value of the variable 'type' which
 can take the following values :

 
 SPEC_DEF -> Default value is returned.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkHeight(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block height for the specified tile and component.

getCBlkInfo() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Gets the reference to the CBlkInfo array

getCBlkWidth(byte, int, int) - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the code-block width :

 
 for the specified tile/component
 for the specified tile
 for the specified component
 default value
 

 The value returned depends on the value of the variable 'type' which
 can take the following values :


 
 SPEC_DEF -> Default value is returned.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the code-block width for the specified tile and component.

getCBlkWidth(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the code-block width for the specified tile and component.

getCbULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the horizontal code-block partition origin.Allowable values are
 0 and 1, nothing else.

getCbULX() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the horizontal code-block partition origin.

getCbULX() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the horizontal code-block partition origin.

getCbULX() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal offset of the code-block partition.

getCbULX() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the horizontal code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the vertical code-block partition origin.

getCbULY() - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the vertical code-block partition origin.

getCbULY() - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the vertical offset of the code-block partition.

getCbULY() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the vertical offset of the code-block partition.

getCbULY() - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the vertical code-block partition origin Allowable values are 0
 and 1, nothing else.

getCCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow

get the hssfcell representing a given column (logical cell) 0-based.

getCellComment() - Method in class loci.poi.hssf.usermodel.HSSFCell

Returns comment associated with this cell

getCellComment(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns cell comment for the specified row and column

getCellFormula() - Method in class loci.poi.hssf.usermodel.HSSFCell
 
getCellNum() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cell's number within the row

getCellOffsetAt(int) - Method in class loci.poi.hssf.record.DBCellRecord

return the cell offset in the array

getCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

gets the options bitmask - you can also use corresponding option bit getters
 (see other methods that reference this one)

getCells() - Method in class loci.poi.hssf.util.AreaReference

return the cell references that define this area

getCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the style for the cell.

getCellStyleAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the cell style object at the given index

getCellType() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the cells type (numeric, formula or string)

getCellValueRecord() - Method in class loci.poi.hssf.usermodel.HSSFCell

Should only be used by HSSFSheet and friends.

getCEnd(int) - Method in class loci.plugins.in.ImporterOptions
 
getCEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the center of the footer.

getCenter() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the center of the header.

getChannel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the defined channels.

getChannel() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channel associated with this File.

getChannel(int) - Method in class ome.xml.model.Pixels
 
getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelAcquisitionMode(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelAcquisitionMode(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelColors() - Method in class loci.formats.in.ND2Handler
 
getChannelContrastMethod(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelContrastMethod(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelContrastMethod(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelContrastMethod(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelCount() - Method in class loci.formats.in.SDTReader

Gets the number of spectral channels.

getChannelCount() - Method in class loci.tests.testng.Configuration
 
getChannelCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelDimCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getChannelDimLength(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getChannelDimLengths() - Method in class loci.formats.ChannelFiller
 
getChannelDimLengths() - Method in class loci.formats.DimensionSwapper
 
getChannelDimLengths() - Method in class loci.formats.FileStitcher
 
getChannelDimLengths() - Method in class loci.formats.FormatReader
 
getChannelDimLengths() - Method in interface loci.formats.IFormatReader

Deprecated. 

getChannelDimLengths() - Method in class loci.formats.ImageReader
 
getChannelDimLengths() - Method in class loci.formats.in.ICSReader
 
getChannelDimLengths() - Method in class loci.formats.ReaderWrapper
 
getChannelDimType(Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getChannelDimTypes() - Method in class loci.formats.ChannelFiller
 
getChannelDimTypes() - Method in class loci.formats.DimensionSwapper
 
getChannelDimTypes() - Method in class loci.formats.FileStitcher
 
getChannelDimTypes() - Method in class loci.formats.FormatReader
 
getChannelDimTypes() - Method in interface loci.formats.IFormatReader

Deprecated. 

getChannelDimTypes() - Method in class loci.formats.ImageReader
 
getChannelDimTypes() - Method in class loci.formats.in.ICSReader
 
getChannelDimTypes() - Method in class loci.formats.ReaderWrapper
 
getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelEmissionWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelEmissionWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelExcitationWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelExcitationWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelFiller() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelFilterSetRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelFilterSetRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelFluor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelFluor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelFluor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelFluor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelGlobalMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global maximum.

getChannelGlobalMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves a specified channel's global minimum.

getChannelID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelIlluminationType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelIlluminationType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelIlluminationType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelIlluminationType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelKnownMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's maximum based on the images that
 have been read.

getChannelKnownMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the specified channel's minimum based on the images that have
 been read.

getChannelLabel(int) - Method in class loci.formats.in.TextReader

Gets the label for the given channel.

getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelLightSourceSettingsAttenuation(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelLightSourceSettingsAttenuation(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelLightSourceSettingsID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelLightSourceSettingsID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelLightSourceSettingsWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelLightSourceSettingsWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getChannelName() - Method in class loci.formats.in.MetamorphHandler
 
getChannelName() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the channelName associated with this File.

getChannelName(int) - Method in class loci.tests.testng.Configuration
 
getChannelName(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelName(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelNames() - Method in class loci.formats.in.ND2Handler
 
getChannelNDFilter(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelNDFilter(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelNDFilter(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelNDFilter(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelPinholeSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelPinholeSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelPinholeSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelPinholeSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelPockelCellSetting(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelPockelCellSetting(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannels(int) - Method in class loci.formats.in.LegacyND2Reader
 
getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getChannelSamplesPerPixel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getChannelSamplesPerPixel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getChannelSeparator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCharacterPos() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
 
getCharCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the character count or 0 if the SummaryInformation
 does not contain a char count.

getCharCount() - Method in class loci.poi.hssf.record.UnicodeString

get the number of characters in the string

getCharPart(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getCharset() - Method in class loci.poi.hssf.record.FontRecord

get the character set

getCharSet() - Method in class loci.poi.hssf.usermodel.HSSFFont

get character-set to use.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Get the chart group index field for the SeriesChartGroupIndex record.

getChartGroupIndex() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Get the chart group index field for the SeriesToChartGroup record.

getCharWidth(char) - Method in class loci.poi.hssf.usermodel.FontDetails

Retrieves the width of the specified character.

getCheckboxes(GenericDialog) - Static method in class loci.plugins.util.WindowTools
 
getChild() - Method in class loci.plugins.util.RecordedImageProcessor
 
getChild(int) - Method in class loci.poi.ddf.EscherRecord

Returns the indexed child record.

getChildById(short) - Method in class loci.poi.ddf.EscherContainerRecord
 
getChildIndex() - Method in class loci.poi.poifs.property.Property

Get the child property (its index in the Property Table)

getChildNames(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getChildPolicy(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getChildRecords() - Method in class loci.poi.ddf.EscherContainerRecord
 
getChildRecords() - Method in class loci.poi.ddf.EscherRecord
 
getChildRecords() - Method in class loci.poi.ddf.UnknownEscherRecord
 
getChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

Returns a list of all shapes contained by the patriarch.

getChildren() - Method in interface loci.poi.hssf.usermodel.HSSFShapeContainer
 
getChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

Return all children contained by this shape.

getChildren() - Method in class loci.poi.poifs.property.DirectoryProperty

Get an iterator over the children of this Parent; all elements
 are instances of Property.

getChildren() - Method in interface loci.poi.poifs.property.Parent

Get an iterator over the children of this Parent; all elements
 are instances of Property.

getChildrenByTagName(Element, String) - Static method in class ome.xml.model.AbstractOMEModelObject

Retrieves all the children of an element that have a given tag name.

getChoices(GenericDialog) - Static method in class loci.plugins.util.WindowTools
 
getClasses() - Method in class loci.formats.ClassList

Gets the list of classes as an array.

getClassID() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "class ID"
 field.

getClassID() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getClip() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getClip() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getClipboardFormat() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard
 Format

getClipboardFormatTag() - Method in class loci.poi.hpsf.Thumbnail

Returns an int representing the Clipboard
 Format Tag

getClipBounds() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClipBounds(Rectangle) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getClipBounds() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getClipRect() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getClipRect() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getCO2Percent() - Method in class ome.xml.model.ImagingEnvironment
 
getCode() - Method in interface loci.common.enumeration.CodedEnum

Retrieves the integer "code" for this enumeration.

getCode() - Method in enum loci.formats.codec.CompressionType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000BoxType

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Implemented as specified by the CodedEnum I/F.

getCode() - Method in enum loci.formats.tiff.IFDType
 
getCode() - Method in enum loci.formats.tiff.PhotoInterp
 
getCode() - Method in enum loci.formats.tiff.TiffCompression
 
getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the specified coded code-block, for the specified component, in
 the current tile.

getCodeBlock(int, int, int, SubbandSyn, int, int, DecLyrdCBlk) - Method in interface jj2000.j2k.entropy.decoder.CodedCBlkDataSrcDec

Returns the specified coded code-block, for the specified component, in
 the current tile.

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified
 component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified
 component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified
 component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified
 component, as a copy (see below).

getCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified
 component, as a copy (see below).

getCodeBlockSize() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets codeBlockSize.

getCodeBlockSize() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeBlockSize

getCodecName() - Method in enum loci.formats.tiff.TiffCompression

Retrieves the name of the TIFF compression codec.

getCodecOptions() - Method in class loci.formats.tiff.TiffParser

Retrieves the current set of codec options being used to decompress pixel
 data.

getCodepage() - Method in class loci.poi.hpsf.CustomProperties

Gets the codepage.

getCodepage() - Method in class loci.poi.hpsf.Section

Gets the section's codepage, if any.

getCodepage() - Method in class loci.poi.hssf.record.CodepageRecord

get the codepage for this workbook

getCodepage() - Method in class loci.poi.hssf.record.InterfaceHdrRecord

get the codepage for the file

getCodeSegSymbol() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets codeSegSymbol

getCodestreamOffset() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the offset to the first contiguous codestream.

getCodestreamPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method creates and returns an array of positions to contiguous
 codestreams in the file

getCodestreamSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getCodestreamSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getCodestreamSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getCol() - Method in class loci.poi.hssf.util.CellReference
 
getCol1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column number for the top-left position.

getCol1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getCol2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The column of the bottom right corner of this shape.

getCol2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getColapsed() - Method in class loci.poi.hssf.record.RowRecord

get whether or not to colapse this row

getColInfo(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getCollapsed() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether the cells are collapsed

getColLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the col gutter.

getColor(short) - Method in class loci.poi.hssf.record.PaletteRecord

Returns the color value at a given index

getColor() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getColor() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getColor() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the color for the font

getColor(short) - Method in class loci.poi.hssf.usermodel.HSSFPalette

Retrieves the color at a given index

getColor() - Method in class ome.xml.model.Channel
 
getColor() - Method in class ome.xml.model.Well
 
getColor1() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColor2() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColor3() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColor4() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the currently set TIFFColorConverter object,
 or null if none is set.

getColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current TIFFColorConverter object that
 will be used to perform color conversion when writing the
 image, or null if none is set.

getColorMode() - Method in class loci.plugins.in.ImporterOptions
 
getColorModeInfo() - Method in class loci.plugins.in.ImporterOptions
 
getColorModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the ColorModel of the image.

getColorModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getColorModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getColorModel() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

Returns the color model created from the palette box.

getColorModel() - Method in class loci.formats.FormatWriter
 
getColorModel() - Method in interface loci.formats.IFormatWriter

Gets the color model.

getColorModel() - Method in class loci.formats.ImageWriter
 
getColorModel() - Method in class loci.formats.WriterWrapper
 
getColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
 
getColorModes() - Method in class loci.plugins.in.ImporterOptions
 
getColorPaletteIndex() - Method in class loci.poi.hssf.record.FontRecord

get the font's color palette index

getColourPaletteIndex() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the colour palette index field for the LineFormat record.

getColumn(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getColumn() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getColumn() - Method in class loci.poi.hssf.record.BlankRecord

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getColumn() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the column this cell defines within the row

getColumn() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getColumn() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getColumn() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getColumn() - Method in class loci.poi.hssf.record.FormulaRecord
 
getColumn() - Method in class loci.poi.hssf.record.LabelRecord
 
getColumn() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getColumn() - Method in class loci.poi.hssf.record.NoteRecord

Return the column that contains the comment

getColumn() - Method in class loci.poi.hssf.record.NumberRecord
 
getColumn() - Method in class loci.poi.hssf.record.RKRecord
 
getColumn() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the column of the cell that contains the comment

getColumn() - Method in class mdbtools.dbengine.sql.FQColumn
 
getColumn(int) - Method in class mdbtools.dbengine.sql.Select
 
getColumn() - Method in class ome.xml.model.Well
 
getColumNames(int) - Method in interface loci.formats.services.MetakitService
 
getColumNames(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the column page breaks

getColumnBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the vertical page breaks

getColumnCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg
 
getColumnCount() - Method in class mdbtools.dbengine.sql.Select
 
getColumnCount() - Method in interface mdbtools.dbengine.Table
 
getColumnFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner column number

getColumnName(int) - Method in interface mdbtools.dbengine.Table
 
getColumnNames(String) - Method in interface loci.formats.services.MetakitService
 
getColumnNames(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnNames(int) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the table with the given index.

getColumnNames(String) - Method in class ome.metakit.MetakitReader

Retrieve the name of every column in the named table.

getColumnNamingConvention() - Method in class ome.xml.model.Plate
 
getColumnRaw() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getColumnRaw() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getColumns() - Method in class ome.xml.model.Plate
 
getColumnTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner column number

getColumnTypes(int) - Method in interface loci.formats.services.MetakitService
 
getColumnTypes(String) - Method in interface loci.formats.services.MetakitService
 
getColumnTypes(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnTypes(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getColumnTypes(int) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the table with the given index.

getColumnTypes(String) - Method in class ome.metakit.MetakitReader

Retrieve the type for every column in the named table.

getColumnWidth(short) - Method in class loci.poi.hssf.model.Sheet

get the width of a given column in units of 1/20th of a point width (twips?)

getColumnWidth() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the columns' width in 1/256 of a character width

getColumnWidth(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the width (in units of 1/256th of a character width )

getColWidth() - Method in class loci.poi.hssf.record.DefaultColWidthRecord

get the default column width

getComment() - Method in class loci.formats.tiff.IFD

Convenience method for obtaining the ImageDescription from this IFD.

getComment() - Method in class loci.formats.tiff.TiffParser

Convenience method for obtaining a stream's first ImageDescription.

getCommentAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getCommentAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getCommentAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getCommentAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getCommentAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getCommentAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getCommentAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getCommentAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getComments() - Method in class loci.formats.in.JPEG2000MetadataParser

Retrieves the list of comments stored in the file.

getComments() - Method in class loci.poi.hpsf.SummaryInformation

Returns the comments (or null).

getCompany() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the company (or null).

getCompatibilityList() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the compatibilty list of this file type box.

getCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply forward component transformation associated with the current
 tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component, using the
 'transfer type' specified in the block given as argument.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply inverse component transformation associated with the current
 tile.

getCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area,
 in the specified component, as a copy (see below).

getCompDef(int) - Method in class jj2000.j2k.ModuleSpec

Gets default value of the specified component.

getCompHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the current
 tile.

getCompImgHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the height in pixels of the specified component in the overall
 image.

getCompImgHeight(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getCompImgHeight(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the height in pixels of the specified component in the overall
 image, for the given (component) resolution level.

getCompImgHeight(int) - Method in interface jj2000.j2k.image.ImgData

Returns the height in pixels of the specified component in the overall
 image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the height in pixels of the specified component in the overall
 image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the height in pixels of the specified component in the
 overall image.

getCompImgHeight(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the height in pixels of the specified component in the overall
 image.

getCompImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the height in pixels of the specified component in the overall
 image.

getCompImgHeight(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the height in pixels of the specified component in the overall
 image, for the given resolution level.

getCompImgHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the height in pixels of the specified component in the overall
 image, for the given resolution level.

getCompImgWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the overall
 image.

getCompImgWidth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ

Width of the specified tile-component

getCompImgWidth(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the width in pixels of the specified component in the overall
 image, for the given (component) resolution level.

getCompImgWidth(int) - Method in interface jj2000.j2k.image.ImgData

Returns the width in pixels of the specified component in the overall
 image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the width in pixels of the specified component in the overall
 image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the width in pixels of the specified component in the overall
 image.

getCompImgWidth(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the width in pixels of the specified component in the overall
 image.

getCompImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the width in pixels of the specified component in the overall
 image.

getCompImgWidth(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the width in pixels of the specified component in the overall
 image, for the given resolution level.

getCompImgWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the width in pixels of the specified component in the overall
 image, for the given resolution level.

getComplexData() - Method in class loci.poi.ddf.EscherComplexProperty

Get the complex data value.

getComponent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
 
getComponent(int) - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

get the specified component

getComponentAssociation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
 
getComponentTransformation() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets componentTransformation.

getComponentTransformation() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets componentTransformation

getComponentType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
 
getComposite() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getComposite() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getCompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getCompressedSize() - Method in class loci.poi.ddf.EscherPictBlip
 
getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.BoundSheetRecord

get whether or not to interperate the Sheetname as compressed unicode (8/16 bit)
 (This is undocumented but can be found as Q187919 on the Microsoft(tm) Support site)

getCompressedUnicodeFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the name compressed Unicode flag

getCompression() - Method in enum loci.formats.codec.CompressionType

Returns the compression.

getCompression(String) - Method in class loci.formats.FormatReader

Retrieves an Compression enumeration
 value for the given String.

getCompression() - Method in class loci.formats.FormatWriter
 
getCompression() - Method in interface loci.formats.IFormatWriter

Gets the current compression type.

getCompression() - Method in class loci.formats.ImageWriter
 
getCompression() - Method in class loci.formats.tiff.IFD

Retrieves the image's compression type (TIFF tag Compression) from
 this IFD.

getCompression() - Method in class loci.formats.WriterWrapper
 
getCompression() - Method in class ome.xml.model.BinData
 
getCompression() - Method in class ome.xml.model.External
 
getCompressionCodecOptions(IFD) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionCodecOptions(IFD, CodecOptions) - Method in enum loci.formats.tiff.TiffCompression

Creates a set of codec options for compression.

getCompressionFlag() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Is the contents of the blip compressed?

getCompressionTagValue() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the value to be assigned to the TIFF Compression tag
 in the TIFF image metadata.

getCompressionType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieve the name of the compression type supported by this compressor.

getCompressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the compression type.

getCompressionTypes() - Method in class loci.formats.FormatWriter
 
getCompressionTypes() - Method in interface loci.formats.IFormatWriter

Gets the available compression types.

getCompressionTypes() - Method in class loci.formats.ImageWriter
 
getCompressionTypes() - Method in class loci.formats.WriterWrapper
 
getCompSubsX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the
 reference grid, along the horizontal direction for the specified
 component.

getCompSubsX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the horizontal
 direction, for the specified component.

getCompSubsX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the horizontal direction,
 for the specified component.

getCompSubsY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the component sub-sampling factor, with respect to the
 reference grid, along the vertical direction for the specified
 component.

getCompSubsY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the component subsampling factor in the vertical
 direction, for the specified component.

getCompSubsY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompSubsY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the component subsampling factor in the vertical direction, for
 the specified component.

getCompULX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the upper-left corner of the
 active tile, with respect to the canvas origin, in the component
 coordinates, for the specified component.

getCompULX(int) - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULX(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the upper-left corner of the active
 tile, with respect to the canvas origin, in the component coordinates,
 for the specified component.

getCompULY(int) - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the upper-left corner of the
 specified component in the current tile.

getCompULY(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the upper-left corner of the
 specified component in the current tile.

getCompWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width in pixels of the specified component in the current
 tile.

getConcatenateInfo() - Method in class loci.plugins.in.ImporterOptions
 
getConfig(String) - Method in class loci.formats.in.PrairieMetadata

Gets the value of the given configuration Key.

getConfig() - Method in class loci.formats.in.PrairieMetadata

Gets a read-only map of configuration key/value pairs.

getContent() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box content in byte array.

getContents() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources
 
getContents() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources
 
getContrastMethod(String) - Method in class loci.formats.FormatReader

Retrieves an ContrastMethod enumeration
 value for the given String.

getContrastMethod() - Method in class ome.xml.model.Channel
 
getCopies() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getCopies() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of copies.

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.COD
 
getCopy(int) - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a copy of this object

getCopy() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getCopy() - Method in class jj2000.j2k.decoder.DecoderSpecs

Returns a copy of the current object.

getCopy() - Method in class jj2000.j2k.ModuleSpec
 
getCoreIndex() - Method in class loci.formats.FileStitcher
 
getCoreIndex() - Method in class loci.formats.FormatReader
 
getCoreIndex() - Method in interface loci.formats.IFormatReader

Return the index into CoreMetadata of the current resolution/series.

getCoreIndex() - Method in class loci.formats.ImageReader
 
getCoreIndex() - Method in class loci.formats.ReaderWrapper
 
getCoreMetadata() - Method in class loci.formats.DimensionSwapper

Deprecated. 

getCoreMetadata() - Method in class loci.formats.FileStitcher

Deprecated. 

getCoreMetadata() - Method in class loci.formats.FormatReader

Deprecated. 

getCoreMetadata() - Method in interface loci.formats.IFormatReader

Deprecated.
Use #getCoreMetadataList instead.


getCoreMetadata() - Method in class loci.formats.ImageReader

Deprecated. 

getCoreMetadata() - Method in class loci.formats.ReaderWrapper

Deprecated. 

getCoreMetadataList() - Method in class loci.formats.DimensionSwapper
 
getCoreMetadataList() - Method in class loci.formats.FileStitcher
 
getCoreMetadataList() - Method in class loci.formats.FormatReader
 
getCoreMetadataList() - Method in interface loci.formats.IFormatReader

Obtains the core metadata values for the current file.

getCoreMetadataList() - Method in class loci.formats.ImageReader
 
getCoreMetadataList() - Method in class loci.formats.in.LeicaHandler
 
getCoreMetadataList() - Method in class loci.formats.in.ND2Handler
 
getCoreMetadataList() - Method in class loci.formats.ReaderWrapper
 
getCorrection(String) - Method in class loci.formats.FormatReader

Retrieves an Correction enumeration
 value for the given String.

getCorrection() - Method in class loci.formats.in.ND2Handler
 
getCorrection() - Method in class ome.xml.model.Objective
 
getCorrectionCollar() - Method in class ome.xml.model.ObjectiveSettings
 
getCount() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the number of data items present in the field.

getCount() - Method in class loci.formats.FilePattern
 
getCount() - Method in class loci.poi.hssf.record.FnGroupCountRecord

get the number of built-in functions

getCreateDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the creation time (or null).

getCreator() - Method in class ome.xml.model.OME
 
getCropInfo() - Method in class loci.plugins.in.ImporterOptions
 
getCropRegion(int) - Method in class loci.plugins.in.ImporterOptions
 
getCropRegion(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCrossingPoint() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the crossing point field for the AxisOptions record.

getCrossingPoint() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the crossing point field for the CategorySeriesAxis record.

getCStep(int) - Method in class loci.plugins.in.ImporterOptions
 
getCStep(int) - Method in class loci.plugins.in.ImportProcess
 
getCurrentColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
 
getCurrentCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the current country

getCurrentFile() - Method in class loci.formats.FormatReader
 
getCurrentFile() - Method in interface loci.formats.IFormatReader

Returns the current file.

getCurrentFile() - Method in class loci.formats.ImageReader
 
getCurrentFile() - Method in class loci.formats.ReaderWrapper
 
getCurrentFile() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getCurrentFile(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getCurrentPos() - Method in class loci.formats.cache.Cache

Gets the current dimensional position.

getCustomColor(int, int) - Method in class loci.plugins.in.ImporterOptions
 
getCustomColorKey(int, int) - Method in class loci.plugins.in.ImporterOptions
 
getCustomMenuLength() - Method in class loci.poi.hssf.record.NameRecord

gets the custom menu length

getCustomMenuText() - Method in class loci.poi.hssf.record.NameRecord

get the custom menu text

getCustomPalette() - Method in class loci.poi.hssf.model.Workbook

Returns the custom palette in use for this workbook; if a custom palette record
 does not exist, then it is created.

getCustomPalette() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
 
getCustomProperties() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Gets the custom properties.

getCutIn(Integer) - Static method in class loci.formats.FormatTools
 
getCutIn() - Method in class ome.xml.model.TransmittanceRange
 
getCutInTolerance() - Method in class ome.xml.model.TransmittanceRange
 
getCutOut(Integer) - Static method in class loci.formats.FormatTools
 
getCutOut() - Method in class ome.xml.model.TransmittanceRange
 
getCutOutTolerance() - Method in class ome.xml.model.TransmittanceRange
 
getCycle() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the cycle associated with this Sequence.

getCycleCount() - Method in class loci.formats.in.PrairieMetadata

Gets the number of recorded cycles.

getCycleMax() - Method in class loci.formats.in.PrairieMetadata

Gets the maximum cycle value.

getCycleMin() - Method in class loci.formats.in.PrairieMetadata

Gets the minimum cycle value.

getData() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a reference to the data object associated with the field.

getData() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the entire image in a single Raster.

getData(Rectangle) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an arbitrary rectangular region of the RenderedImage
 in a Raster.

getData() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Returns the UUID data of this box.

getData() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getData(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getData() - Method in class jj2000.j2k.image.DataBlk

Returns the array containing the data, or null if there is no
 data.

getData() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no
 data array.

getData() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no
 data array.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the array containing the data, or null if there is no data.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no
 data array.

getData() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no
 data array.

getData() - Method in class loci.formats.gui.SignedByteBuffer
 
getData(int) - Method in class loci.formats.gui.SignedByteBuffer
 
getData() - Method in class loci.formats.gui.SignedShortBuffer
 
getData(int) - Method in class loci.formats.gui.SignedShortBuffer
 
getData() - Method in class loci.formats.gui.UnsignedIntBuffer
 
getData(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getData() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The BLIP data

getData() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns any extra data associated with this record.

getData() - Method in class loci.poi.ddf.UnknownEscherRecord
 
getData() - Method in class loci.poi.hssf.record.ContinueRecord

get the data for continuation

getData() - Method in class loci.poi.hssf.record.DrawingRecord
 
getData() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getData() - Method in class loci.poi.hssf.usermodel.HSSFPictureData

Gets the picture data.

getData() - Method in interface loci.poi.poifs.storage.ListManagedBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.RawDataBlock

Get the data from the block

getData() - Method in class loci.poi.poifs.storage.SmallDocumentBlock

Get the data from the block

getData() - Method in interface mdbtools.dbengine.Table
 
getDataElements(int, Object) - Method in class loci.formats.gui.Index16ColorModel
 
getDataElements(int, Object) - Method in class loci.formats.gui.SignedColorModel
 
getDataElements(int, Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getDataFloat() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the array containing the data, or null if there is no
 data array.

getDataFloat() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the array containing the data, or null if there is no
 data array.

getDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index of the format

getDataFormatString(Workbook) - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

Get the contents of the format string, by looking up
  the DataFormat against the supplied workbook

getDataInt() - Method in class jj2000.j2k.image.DataBlkInt

Returns the array containing the data, or null if there is no
 data array.

getDataInt() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the array containing the data, or null if there is no
 data array.

getDataLabelPlacement() - Method in class loci.poi.hssf.record.TextRecord
 
getDataset(int) - Method in class ome.xml.model.OME
 
getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetCount() - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetCount() - Method in class ome.xml.meta.DummyMetadata
 
getDatasetCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetID(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetImageRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetImageRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetImageRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetImageRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetImageRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetImageRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetImageRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetImageRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetName(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDatasetRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getDatasetRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDatasetRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDatasetStructureDescription() - Method in class loci.formats.FormatReader
 
getDatasetStructureDescription() - Method in interface loci.formats.IFormatReader

Returns a short description of the dataset structure.

getDatasetStructureDescription() - Method in class loci.formats.ImageReader
 
getDatasetStructureDescription() - Method in class loci.formats.ReaderWrapper
 
getDataType() - Method in class jj2000.j2k.image.DataBlk

Returns the data type of the DataBlk object, as
 defined in this class.

getDataType() - Method in class jj2000.j2k.image.DataBlkFloat

Returns the identifier of this data type, TYPE_FLOAT,
 as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.image.DataBlkInt

Returns the identifier of this data type, TYPE_INT,
 as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat

Returns the type of data on which this filter works, as defined
 in the DataBlk interface, which is always TYPE_FLOAT for this
 class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt

Returns the type of data on which this filter works, as defined
 in the DataBlk interface, which is always TYPE_INT for this
 class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData

Returns the data type of the CBlkWTData object, as
 defined in the DataBlk class.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat

Returns the identifier of this data type, TYPE_FLOAT,
 as defined in DataBlk.

getDataType() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt

Returns the data type of this object, always DataBlk.TYPE_INT.

getDataType(int, int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Return the data type of this CBlkWTDataSrc for the given
  component in the current tile.

getDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Return the data type of this CBlkWTDataSrc.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat

Returns the type of data on which this filter works, as defined
 in the DataBlk interface, which is always TYPE_FLOAT for this
 class.

getDataType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt

Returns the type of data on which this filter works, as defined
 in the DataBlk interface, which is always TYPE_INT for this
 class.

getDataType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the type of data on which this filter works, as defined
 in the DataBlk interface.

getDataTypes() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns a bit mask indicating the set of data types that may
 be used to store the data associated with the tag.

getDate() - Method in class loci.formats.in.MetamorphHandler
 
getDate() - Method in class loci.formats.in.ND2Handler
 
getDate() - Method in class loci.formats.in.PrairieMetadata

Gets the date of the acquisition.

getDate() - Method in class loci.tests.testng.Configuration
 
getDateCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a date.

getDatestamp() - Method in class loci.formats.in.SVSReader
 
getDbcellAt(int) - Method in class loci.poi.hssf.record.IndexRecord
 
getDebugInfo() - Method in class loci.poi.hssf.record.UnicodeString

return a character representation of the fields of this record

getDecoderSpecs() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the DecoderSpecs instance filled when reading the headers

getDecodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets decodingRate.

getDecomp(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the wavelet tree decomposition.

getDecomp(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the wavelet tree decomposition.

getDecompLevels(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the number of decomposition levels that are applied to
 obtain the LL band, in the specified tile-component.

getDecompLevels(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the number of decomposition levels that are applied to the LL
 band, in the specified tile-component.

getDecompositionLevel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets decompositionLevel

getDecompType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition type to be used in component 'n' and tile
 't'.

getDecSpecType(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the type of specification for the decomposition in the
 specified component and tile.

getDefault() - Method in class jj2000.j2k.ModuleSpec

Gets default value for this module.

getDefault() - Method in class loci.plugins.prefs.BooleanOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.DoubleOption

Gets the default value of the option.

getDefault() - Method in class loci.plugins.prefs.StringOption

Gets the default value of the option.

getDefaultColorModel() - Method in class loci.plugins.util.RecordedImageProcessor
 
getDefaultColumnWidth() - Method in class loci.poi.hssf.model.Sheet

get the default column width for the sheet (if the columns do not define their own width)

getDefaultColumnWidth() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default column width for the sheet (if the columns do not define their own width) in
 characters

getDefaultConfiguration() - Static method in class loci.formats.gui.AWTImageTools

Gets the default graphics configuration for the environment.

getDefaultCountry() - Method in class loci.poi.hssf.record.CountryRecord

gets the default country

getDefaultCustomColor(int) - Method in class loci.plugins.in.ImporterOptions
 
getDefaultHeader() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display a default header

getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
getDefaultImageMetadata(ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ArrayPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.BoolPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ErrPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.IntPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the default operands class value

getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NamePtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NameXPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.NumberPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.OperationPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ptg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.StringPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getDefaultOperandClass() - Method in class loci.poi.hssf.record.formula.UnknownPtg
 
getDefaultOptions() - Static method in class loci.formats.codec.CodecOptions

Return CodecOptions with reasonable default values.

getDefaultOptions() - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions with reasonable default values.

getDefaultOptions(CodecOptions) - Static method in class loci.formats.codec.JPEG2000CodecOptions

Return JPEG2000CodecOptions using the given CodecOptions as the default.

getDefaultReaderClasses() - Static method in class loci.formats.ImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getDefaultReadParam() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet

get the default row height for the sheet (if the rows do not define their own height)

getDefaultRowHeight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in
 twips (1/20 of  a point)

getDefaultRowHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get the default row height for the sheet (if the rows do not define their own height) in
 points.

getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
getDefaultStreamMetadata(ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
 
getDefaultValue(String) - Method in class loci.plugins.prefs.OptionsList

Gets the default value of the string option with the given key.

getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getDefaultWriteParam() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
 
getDefaultWriterClasses() - Static method in class loci.formats.ImageWriter
 
getDefinitionLength() - Method in class loci.poi.hssf.record.NameRecord

get the definition length

getDelMenuCount() - Method in class loci.poi.hssf.record.MMSRecord

get number of add del options (should be 0)

getDeltaT() - Method in class ome.xml.model.Plane
 
getDenominator() - Method in class loci.formats.tiff.TiffRational

Gets this number's denominator.

getDenominator() - Method in class loci.poi.hssf.record.SCLRecord

Get the denominator field for the SCL record.

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.DequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDequantizerType() - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

Returns the type of the dequantizer for which the parameters are.

getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
 
getDescription(Locale) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
 
getDescription() - Method in class loci.formats.gui.ComboFileFilter

Returns the filter's description.

getDescription() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.FormatFileFilter

Gets the filter's description.

getDescription() - Method in class loci.formats.gui.NoExtensionFileFilter

Gets the filter's description.

getDescription() - Method in class loci.poi.ddf.EscherPropertyMetaData
 
getDescription() - Method in class ome.xml.model.Annotation
 
getDescription() - Method in class ome.xml.model.Dataset
 
getDescription() - Method in class ome.xml.model.Experiment
 
getDescription() - Method in class ome.xml.model.ExperimenterGroup
 
getDescription() - Method in class ome.xml.model.Image
 
getDescription() - Method in class ome.xml.model.MicrobeamManipulation
 
getDescription() - Method in class ome.xml.model.Plate
 
getDescription() - Method in class ome.xml.model.PlateAcquisition
 
getDescription() - Method in class ome.xml.model.Project
 
getDescription() - Method in class ome.xml.model.Reagent
 
getDescription() - Method in class ome.xml.model.ROI
 
getDescription() - Method in class ome.xml.model.Screen
 
getDescriptionText() - Method in class loci.poi.hssf.record.NameRecord

gets the description text

getDescriptionTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the description text length

getDeser() - Method in class loci.formats.Memoizer

Returns a configured Kryo instance.

getDestination(ImageReadParam, Iterator, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getDestinationRegion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getDestinationType(ImageReadParam, Iterator) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Gets the destination image type.

getDetector(int) - Method in class loci.tests.testng.Configuration
 
getDetector() - Method in class ome.xml.model.DetectorSettings
 
getDetector(int) - Method in class ome.xml.model.Instrument
 
getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorAmplificationGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorAmplificationGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorGain(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorGain(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorOffset(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorOffset(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorOffset(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorOffset(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettings() - Method in class ome.xml.model.Channel
 
getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsBinning(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsBinning(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsGain(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsGain(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettingsID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsIntegration(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsIntegration(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsOffset(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsOffset(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsReadOutRate(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsReadOutRate(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsVoltage(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsVoltage(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorSettingsZoom(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorSettingsZoom(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorType(String) - Method in class loci.formats.FormatReader

Retrieves an DetectorType enumeration
 value for the given String.

getDetectorType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorVoltage(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorVoltage(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorVoltage(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorVoltage(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDetectorZoom(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDetectorZoom(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDetectorZoom(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDetectorZoom(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getDeviceConfiguration() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getDgg() - Method in class loci.poi.hssf.model.DrawingManager
 
getDgg() - Method in class loci.poi.hssf.model.DrawingManager2
 
getDiag() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Not sure what this is for (maybe fill lines?) 1 = down, 2 = up, 3 = both, 0 for none..

getDialog() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether sheet is a dialog sheet or not

getDialog() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether sheet is a dialog sheet or not

getDichroic(int) - Method in class ome.xml.model.Instrument
 
getDichroicCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDichroicCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getDichroicCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDichroicCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDichroicID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDichroicID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDichroicID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDichroicID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDichroicLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDichroicLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDichroicLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDichroicLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDichroicManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDichroicManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDichroicManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDichroicManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDichroicModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDichroicModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDichroicModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDichroicModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDichroicSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDichroicSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDictionary() - Method in class loci.poi.hpsf.Section

Gets the section's dictionary.

getDigitPart(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getDim() - Method in class loci.poi.hssf.util.AreaReference

return the dimensions of this area

getDimension(String) - Method in interface loci.formats.services.NetCDFService

Retrieves the length of a dimension.

getDimension(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getDimensionOrder() - Method in class loci.formats.ChannelMerger
 
getDimensionOrder() - Method in class loci.formats.ChannelSeparator
 
getDimensionOrder() - Method in class loci.formats.DimensionSwapper
 
getDimensionOrder() - Method in class loci.formats.FileStitcher
 
getDimensionOrder() - Method in class loci.formats.FormatReader
 
getDimensionOrder(String) - Method in class loci.formats.FormatReader

Retrieves an DimensionOrder enumeration
 value for the given String.

getDimensionOrder() - Method in interface loci.formats.IFormatReader

Gets a five-character string representing the
 dimension order in which planes will be returned.

getDimensionOrder() - Method in class loci.formats.ImageReader
 
getDimensionOrder() - Method in class loci.formats.ReaderWrapper
 
getDimensionOrder(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getDimensionOrder() - Method in class loci.tests.testng.Configuration
 
getDimensionOrder() - Method in class ome.xml.model.Pixels
 
getDimensionSwapper() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getDimsLoc() - Method in class loci.poi.hssf.model.Sheet

get the location of the DimensionsRecord (which is the last record before the value section)

getDirectory() - Method in class loci.poi.hssf.usermodel.HSSFObjectData

Gets the object data.

getDisplayedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the displayed tab number

getDisplayedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

sets the first tab that is displayed in the list of tabs
 in excel.

getDisplayFormulas() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display formulas

getDisplayGridlines() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display gridlines

getDisplayGuts() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the outline symbols are displaed

getDisplayGuts() - Method in class loci.poi.hssf.record.WSBoolRecord

get whether to display the guts or not

getDisplayGuts() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether to display the guts or not

getDisplayHorizontalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the horizontal scrollbar or not

getDisplayMode() - Method in class loci.poi.hssf.record.TextRecord

Get the display mode field for the Text record.

getDisplayRowColHeadings() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display row and column headings

getDisplayTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the tabs or not

getDisplayVerticalScrollbar() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether to display the vertical scrollbar or not

getDisplayZeros() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should display zero values

getDocparts() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the doc parts (or null)
 when this method is implemented.


getDocument() - Method in class loci.formats.gui.XMLWindow

Gets the XML document currently being displayed within the window.

getDocument() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the POIFSDocument

getDocument() - Method in class loci.poi.poifs.property.DocumentProperty

get the POIFSDocument

getDocumentBytes(String) - Method in interface loci.formats.services.POIService

Retrieve all of the raw bytes that correspond to the given file name.

getDocumentBytes(String, int) - Method in interface loci.formats.services.POIService

Retrieve at most 'length' bytes that correspond to the given file name.

getDocumentBytes(String) - Method in class loci.formats.services.POIServiceImpl
 
getDocumentBytes(String, int) - Method in class loci.formats.services.POIServiceImpl
 
getDocumentList() - Method in interface loci.formats.services.POIService

Retrieve a list of all files in the current POI file system.

getDocumentList() - Method in class loci.formats.services.POIServiceImpl
 
getDocumentStream(String) - Method in interface loci.formats.services.POIService

Retrieve a RandomAccessInputStream corresponding to the given file name.

getDocumentStream(String) - Method in class loci.formats.services.POIServiceImpl
 
getDocumentSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Document Summary Information of the document

getDocumentSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

Returns the Document Summary Information properties
 singleton.

getDomains() - Method in class loci.formats.FormatReader
 
getDomains() - Method in interface loci.formats.IFormatReader

Returns the list of domains represented by the current file.

getDomains() - Method in class loci.formats.ImageReader
 
getDomains() - Method in class loci.formats.in.CellomicsReader
 
getDomains() - Method in class loci.formats.in.ICSReader
 
getDomains() - Method in class loci.formats.in.MetamorphTiffReader
 
getDomains() - Method in class loci.formats.in.NiftiReader
 
getDomains() - Method in class loci.formats.in.OMETiffReader
 
getDomains() - Method in class loci.formats.in.OMEXMLReader
 
getDomains() - Method in class loci.formats.ReaderWrapper
 
getDouble(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a double value from a byte array, reads it in little endian format
  then converts the resulting revolting IEEE 754 (curse them) floating
  point number to a happy java double

getDouble(byte[]) - Static method in class loci.poi.util.LittleEndian

get a double value from the beginning of a byte array

getDoubleAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubleAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubleAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubleAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getDoubleAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getDoubleAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getDoubleAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getDoubles(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDoubles(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of doubles, one per channel.

getDraft() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getDraft() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the draft mode.

getDrawAreaHeight() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getDrawAreaWidth() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getDrawingGroupId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
getDrawingGroupId() - Method in class loci.poi.ddf.EscherDgRecord

Gets the drawing group id for this record.

getDrawingManager() - Method in class loci.poi.hssf.model.Workbook
 
getDrawingsSaved() - Method in class loci.poi.ddf.EscherDggRecord
 
getDsf() - Method in class loci.poi.hssf.record.DSFRecord

get the DSF flag

getDT(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getDX(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getDx1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the top left point.

getDx1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset within the top-left cell.

getDx1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDx2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Retrieves offset within the parent coordinate space for the bottom right point.

getDx2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The x offset withing the cell for the bottom-right corner of this shape.

getDx2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDY(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getDy1() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets offset within the parent coordinate space for the top left point.

getDy1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset within the top-left corner of the current shape.

getDy1() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDy2() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Gets the offset within the parent coordinate space for the bottom right point.

getDy2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The y offset withing the cell for the bottom-right corner of this shape.

getDy2() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
getDZ(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getEditTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the total time spent in editing the document (or
 0).

getEffectiveSizeC() - Method in class loci.formats.FormatReader
 
getEffectiveSizeC() - Method in interface loci.formats.IFormatReader

Gets the effective size of the C dimension, guaranteeing that
 getEffectiveSizeC() * getSizeZ() * getSizeT() == getImageCount()
 regardless of the result of isRGB().

getEffectiveSizeC() - Method in class loci.formats.ImageReader
 
getEffectiveSizeC() - Method in class loci.formats.ReaderWrapper
 
getEffectiveSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getElem(int) - Method in class loci.formats.gui.SignedByteBuffer
 
getElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer
 
getElem(int, int) - Method in class loci.formats.gui.SignedShortBuffer
 
getElem(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElemDouble(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElemDouble(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElement(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getElement(int) - Method in class loci.poi.ddf.EscherArrayProperty
 
getElementDescription(String, Locale) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getElementMaxChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getElementMinChildren(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

This method will be called by the getNativeNodeForSimpleBox of the
  class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

This method will be called by the getNativeNodeForSimpleBox of the
  class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

This method will be called by the getNativeNodeForSimpleBox of the
  class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

This method will be called by the getNativeNodeForSimpleBox of the
  class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

This method will be called by the getNativeNodeForSimpleBox of the
  class Box to get the element names.

getElementNames() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

This method will be called by the getNativeNodeForSimpleBox of the
  class Box to get the element names.

getElements() - Method in class loci.formats.FilePattern
 
getElements() - Method in class loci.formats.FilePatternBlock
 
getElementSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getElemFloat(int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getElemFloat(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
 
getEllipseFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseRadiusX(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseRadiusX(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseRadiusX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseRadiusX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseRadiusY(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseRadiusY(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseRadiusY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseRadiusY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseX(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseX(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEllipseY(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getEllipseY(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getEllipseY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getEllipseY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getEmail() - Method in class ome.xml.model.Experimenter
 
getEmission() - Method in class loci.formats.in.SVSReader
 
getEmissionWavelength(Integer) - Static method in class loci.formats.FormatTools
 
getEmissionWavelength(int) - Method in class loci.tests.testng.Configuration
 
getEmissionWavelength() - Method in class ome.xml.model.Channel
 
getEmissionWavelengths() - Method in class loci.formats.in.ND2Handler
 
getEmpty() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the empty field for the SheetProperties record.

getEncoding() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.
As of 3-Jan-06 POI now automatically handles Unicode without forcing the encoding.


getEncodingRate() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets encodingRate.

getEncodingRate() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getEndRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the end row in a block

getEndTime() - Method in class ome.xml.model.PlateAcquisition
 
getEntity() - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.BinningEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler
 
getEntity() - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Retrieve the entity corresponding to this handler.

getEntity() - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MediumEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler
 
getEntity() - Method in class ome.xml.model.enums.handlers.PulseEnumHandler
 
getEntries() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get an iterator of the Entry instances contained directly in
 this instance (in other words, children only; no grandchildren
 etc.)

getEntries() - Method in class loci.poi.poifs.filesystem.DirectoryNode

get an iterator of the Entry instances contained directly in
 this instance (in other words, children only; no grandchildren
 etc.)

getEntry(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

get a specified Entry by name

getEntry(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode

get a specified Entry by name

getEntryCount() - Method in class loci.common.ZipHandle

Returns the number of entries.

getEntryCount() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

find out how many Entry instances are contained directly within
 this DirectoryEntry

getEntryCount() - Method in class loci.poi.poifs.filesystem.DirectoryNode

find out how many Entry instances are contained directly within
 this DirectoryEntry

getEntryName() - Method in class loci.common.ZipHandle

Get the name of the backing Zip entry.

getEnumeratedColorSpace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the enumerated color space.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ArcTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.BinningEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CompressionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ContrastMethodEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.CorrectionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DetectorTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.DimensionOrderEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ExperimentTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilamentTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FillRuleEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FilterTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontFamilyEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.FontStyleEnumHandler
 
getEnumeration(String) - Method in interface ome.xml.model.enums.handlers.IEnumerationHandler

Attempt to find an enumeration from a list of enumeration values.

getEnumeration(String) - Method in class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.ImmersionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserMediumEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LaserTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.LineCapEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MarkerEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MediumEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.NamingConventionEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PixelTypeEnumHandler
 
getEnumeration(String) - Method in class ome.xml.model.enums.handlers.PulseEnumHandler
 
getEofLoc() - Method in class loci.poi.hssf.model.Sheet
 
getEPH() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets EPH.

getEPH() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets EPH

getEqualsToIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord
 
getEquation() - Method in class mdbtools.dbengine.sql.Join
 
getErrorCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as an error code.

getErrorCount() - Method in class loci.common.xml.ValidationErrorHandler
 
getErrorMessage() - Method in class loci.formats.FilePattern

Gets the file pattern error message, if any.

getErrorValue() - Method in class loci.poi.hssf.record.BoolErrRecord

get the error value for the cell

getEscherProperties() - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherProperty(int) - Method in class loci.poi.ddf.EscherOptRecord

The list of properties stored by this record.

getEscherRecord(int) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getEscherTextbox() - Method in class loci.poi.hssf.model.TextboxShape
 
getExcelDate(Date) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a Date, converts it into a double representing its internal Excel representation,
   which is the number of days since 1/1/1900.

getExcitation() - Method in class loci.formats.in.SVSReader
 
getExcitationWavelength(Integer) - Static method in class loci.formats.FormatTools
 
getExcitationWavelength(int) - Method in class loci.tests.testng.Configuration
 
getExcitationWavelength() - Method in class ome.xml.model.Channel
 
getExcitationWavelengths() - Method in class loci.formats.in.ND2Handler
 
getExFormatAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the ExtendedFormatRecord at the given 0-based index

getExifIFDs() - Method in class loci.formats.tiff.TiffParser

Returns EXIF IFDs.

getExifTagName(int) - Static method in class loci.formats.in.BaseTiffReader
 
getExperiment() - Method in class ome.xml.model.MicrobeamManipulation
 
getExperiment(int) - Method in class ome.xml.model.OME
 
getExperimentCount() - Method in class ome.xml.meta.AggregateMetadata
 
getExperimentCount() - Method in class ome.xml.meta.DummyMetadata
 
getExperimentCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimentCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimentDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimentDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimentDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimentDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenter(int) - Method in class ome.xml.model.OME
 
getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterCount() - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterCount() - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterEmail(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterEmail(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterEmail(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterEmail(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterFirstName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterFirstName(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterFirstName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterFirstName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroup(int) - Method in class ome.xml.model.OME
 
getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupCount() - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupCount() - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupExperimenterRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupExperimenterRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupExperimenterRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupExperimenterRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupID(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupLeader(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupLeader(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterGroupName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterGroupName(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterGroupName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterGroupName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterID(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterInstitution(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterInstitution(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterInstitution(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterInstitution(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterLastName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterLastName(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterLastName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterLastName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterMiddleName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterMiddleName(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterMiddleName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterMiddleName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimenterUserName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimenterUserName(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimenterUserName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimenterUserName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimentExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimentExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimentExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimentExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimentID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimentID(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimentID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimentID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExperimentType(String) - Method in class loci.formats.FormatReader

Retrieves an ExperimentType enumeration
 value for the given String.

getExperimentType(int) - Method in class ome.xml.meta.AggregateMetadata
 
getExperimentType(int) - Method in class ome.xml.meta.DummyMetadata
 
getExperimentType(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getExperimentType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getExposures() - Method in class loci.formats.in.MetamorphHandler
 
getExposureTime() - Method in class loci.formats.in.SVSReader
 
getExposureTime(int) - Method in class loci.tests.testng.Configuration
 
getExposureTime() - Method in class ome.xml.model.Plane
 
getExposureTimes() - Method in class loci.formats.in.ND2Handler
 
getExpressionLength() - Method in class loci.poi.hssf.record.FormulaRecord

get the length (in number of tokens) of the expression

getExpressionLength() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getExtendedRst() - Method in class loci.poi.hssf.record.UnicodeString
 
getExtension() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's first valid extension.

getExtensionFunctions() - Method in class loci.plugins.macro.MacroFunctions
 
getExtensions() - Method in class loci.formats.gui.ExtensionFileFilter

Gets the filter's valid extensions.

getExternal() - Method in class ome.xml.model.BinaryFile
 
getExternalDescription() - Method in class ome.xml.model.Well
 
getExternalIdentifier() - Method in class ome.xml.model.Plate
 
getExternalIdentifier() - Method in class ome.xml.model.Well
 
getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getExternSheetIndex() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getExternSheetNumber() - Method in class loci.poi.hssf.record.NameRecord

gets the extern sheet number

getExternsheetPos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the externsheetPos.

getExtraLayers(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of extra layers to add after the optimization point
 'n', but before optimization point 'n+1'.

getExtraLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box extra length.

getf(int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getf(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getFailureClass() - Method in exception loci.common.services.DependencyException

Returns the class that was used during a failed instantiation.

getFamily() - Method in class loci.poi.hssf.record.FontRecord

get the font family (TODO)

getFieldIndex() - Method in class loci.formats.in.ND2Handler
 
getFieldIndex() - Method in class ome.xml.model.Plate
 
getFieldName(Class<?>, int) - Static method in class loci.common.DebugTools

This method uses reflection to scan the values of the given class's
 static fields, returning the first matching field's name.

getFieldName(int) - Static method in class loci.formats.tiff.IFD

This method uses reflection to scan the values of this class's
 static fields, returning the first matching field's name.

getFilamentID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilamentID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilamentID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilamentID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilamentLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilamentLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilamentLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilamentLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilamentManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilamentManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilamentManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilamentManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilamentModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilamentModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilamentModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilamentModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilamentPower(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilamentPower(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilamentPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilamentPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilamentSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilamentSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilamentType(String) - Method in class loci.formats.FormatReader

Retrieves an FilamentType enumeration
 value for the given String.

getFilamentType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilamentType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilamentType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilamentType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFile(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the File with the given channel.

getFile(int, int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle, index,
 channel).

getFile(int, int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame at the given (cycle, index,
 channel).

getFile() - Method in interface loci.formats.services.NetCDFService

Retrieves the current initialized file path.

getFile() - Method in class loci.formats.services.NetCDFServiceImpl
 
getFile() - Method in class loci.tests.testng.Configuration
 
getFileAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getFileAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFileAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFileAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFileAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getFileAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFileAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFileAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getFileAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getFileAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getFileAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFileAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getFileAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getFileAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFileAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFileAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getFileAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getFileAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFileAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFileAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getFileAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getFileAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFileAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFileChannel() - Method in class loci.common.NIOFileHandle

Gets the FileChannel from this FileHandle.

getFileIdClusters() - Method in class loci.poi.ddf.EscherDggRecord
 
getFilename(int, int, IFormatReader, String) - Static method in class loci.formats.FormatTools
 
getFilename() - Method in class loci.formats.in.PrairieMetadata.PFile

Gets the filename associated with this File.

getFileName() - Method in class ome.xml.model.BinaryFile
 
getFileName() - Method in class ome.xml.model.UUID
 
getFilenames(String, IFormatReader) - Static method in class loci.formats.FormatTools
 
getFilePattern() - Method in class loci.formats.AxisGuesser

Gets the file pattern.

getFilePattern() - Method in class loci.formats.FileStitcher

Gets the file pattern object used to build the list of files.

getFilePointer() - Method in class loci.common.ByteArrayHandle
 
getFilePointer() - Method in class loci.common.FileHandle
 
getFilePointer() - Method in interface loci.common.IRandomAccess

Returns the current offset in this stream.

getFilePointer() - Method in class loci.common.NIOFileHandle
 
getFilePointer() - Method in class loci.common.NIOInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessInputStream

Gets the current (absolute) file pointer.

getFilePointer() - Method in class loci.common.RandomAccessOutputStream

Returns the current offset within the stream.

getFilePointer() - Method in class loci.common.StreamHandle
 
getFiles() - Method in class loci.formats.FilePattern

Gets a listing of all files matching the given file pattern.

getFiles(String, List, ConfigurationTree, String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[]) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFiles(String, List, ConfigurationTree, String, String[], String) - Static method in class loci.tests.testng.TestTools

Recursively generate a list of files to test.

getFileSharing() - Method in class loci.poi.hssf.model.Workbook
 
getFileSize(String) - Method in interface loci.formats.services.POIService

Retrieve the total number of bytes in the given file.

getFileSize(String) - Method in class loci.formats.services.POIServiceImpl
 
getFileStitcher() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getFileTimestamp() - Static method in class loci.common.DateTools

Returns a timestamp for the current timezone in a format suitable
 for a filename in a locale-independent format
 ("YYYY-MM-DD_HH-MM-SS")

getFillBackground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the background palette color index

getFillBackgroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the background fill color

getFillByte() - Static method in class loci.poi.poifs.storage.DocumentBlock
 
getFillColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color used to fill this shape.

getFillColor() - Method in class ome.xml.model.Shape
 
getFillForeground() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the foreground palette color index

getFillForegroundColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the foreground fill color

getFillPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the fill palette options bitmask (see indivdual bit getters that
 reference this method)

getFillPattern() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the fill pattern (??) - set to 1 to fill with foreground color

getFillRule(String) - Method in class loci.formats.FormatReader

Retrieves an FillRule enumeration
 value for the given String.

getFillRule() - Method in class ome.xml.model.Shape
 
getFilter() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets filters.

getFilter() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Filter should always be 0

getFilter(int) - Method in class ome.xml.model.Instrument
 
getFilterCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterFilterWheel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterFilterWheel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterFilterWheel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterFilterWheel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets filters

getFilters() - Method in class loci.formats.gui.ComboFileFilter

Gets the list of file filters forming this filter combination.

getFilterSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSet(int) - Method in class ome.xml.model.Instrument
 
getFilterSetCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetDichroicRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetDichroicRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetEmissionFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetEmissionFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetExcitationFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetExcitationFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterSetSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterSetSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the type of filter used according to the FilterTypes
 interface.

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the type of filter used according to the FilterTypes
 interface(W9x7).

getFilterType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the type of filter used according to the FilterTypes interface
 (W5x3).

getFilterType(String) - Method in class loci.formats.FormatReader

Retrieves an FilterType enumeration
 value for the given String.

getFilterType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getFilterType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getFilterType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getFilterType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getFilterWheel() - Method in class ome.xml.model.Filter
 
getFinalCRC() - Method in class loci.common.CRC
 
getFirst() - Method in class loci.formats.FilePattern
 
getFirst() - Method in class loci.formats.FilePatternBlock
 
getFirstC() - Method in class ome.xml.model.TiffData
 
getFirstCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getFirstCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the number of the first cell contained in this row.

getFirstChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getFirstCodeStreamLength() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the length of the first contiguous codestreams in
 the file

getFirstCodeStreamPos() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader

This method returns the position of the first contiguous codestreams in
 the file

getFirstCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first column number for the sheet

getFirstCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the first cell this row (0 based index)

getFirstColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the first column this record defines formatting info for

getFirstColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getFirstColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getFirstColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.MulRKRecord

starting column (first cell this holds in the row)

getFirstColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getFirstColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getFirstColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getFirstFile() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the first File of the Sequence.

getFirstFrame() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the first Frame of the Sequence.

getFirstIFD() - Method in class loci.formats.tiff.TiffParser

Gets the first IFD within the TIFF file, or null
 if the input source is not a valid TIFF file.

getFirstIFDEntry(int) - Method in class loci.formats.tiff.TiffParser

Retrieve a given entry from the first IFD in the stream.

getFirstName() - Method in class ome.xml.model.Experimenter
 
getFirstOffset() - Method in class loci.formats.tiff.TiffParser

Gets offset to the first IFD, or -1 if stream is not TIFF.

getFirstRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the first row number for the sheet

getFirstRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getFirstRow() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getFirstRow() - Method in class loci.poi.hssf.record.IndexRecord
 
getFirstRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getFirstRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getFirstRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getFirstRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the first row on the sheet

getFirstSection() - Method in class loci.poi.hpsf.PropertySet

Gets the PropertySet's first section.

getFirstSection() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getFirstSequence() - Method in class loci.formats.in.PrairieMetadata

Gets the first Sequence.

getFirstT() - Method in class ome.xml.model.TiffData
 
getFirstTimeInfo() - Method in class loci.plugins.in.ImporterOptions
 
getFirstZ() - Method in class ome.xml.model.TiffData
 
getFitHeight() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getFitHeight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages high to fit the sheet in.

getFitToPage() - Method in class loci.poi.hssf.record.WSBoolRecord

fit to page option is on

getFitToPage() - Method in class loci.poi.hssf.usermodel.HSSFSheet

fit to page option is on

getFitWidth() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getFitWidth() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the number of pages wide to fit sheet in.

getFixedPoint(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the position of the fixed point in the specified component
 (i.e.

getFixedPoint(int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns the position of the fixed point in the specified component, or
 equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the position of the fixed point in the specified
 component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns the position of the fixed point in the specified
 component.

getFixedPoint(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the position of the fixed point in the specified
 component.

getFixedPoint(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the position of the fixed point in the specified component
 (i.e.

getFixedPoint(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the position of the fixed point in the specified
 component.

getFixedPoint(int) - Method in class jj2000.j2k.image.Tiler

Returns the position of the fixed point in the specified
 component.

getFixedPoint(int) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the position of the fixed point in the output data for the
 specified component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the position of the fixed point in the specified component, or
 equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the position of the fixed point in the specified
 component.

getFixedPoint(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the position of the fixed point in the specified component, or
 equivalently the number of fractional bits.

getFixedPoint(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the position of the fixed point in the specified
 component.

getFlag() - Method in class loci.poi.ddf.EscherClientAnchorRecord

0 = Move and size with Cells, 2 = Move but don't size with cells, 3 = Don't move or size with cells.

getFlag() - Method in class loci.poi.hssf.record.SupBookRecord
 
getFlag() - Method in class loci.poi.hssf.record.UseSelFSRecord

returns whether we use natural language formulas or not

getFlags() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the Flags data element.

getFlags() - Method in class loci.poi.ddf.EscherSpRecord

The flags that apply to this shape.

getFlags() - Method in class loci.poi.hssf.record.NoteRecord

Options flags.

getFlags() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Get the flags field for the SheetProperties record.

getFlexFiles() - Method in class loci.formats.in.FlexReader.MeaHandler
 
getFloatArray() - Method in class loci.plugins.util.RecordedImageProcessor
 
getFloats(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFloats(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of floats, one per channel.

getFluor() - Method in class ome.xml.model.Channel
 
getFlushedPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getFnGroup() - Method in class loci.poi.hssf.record.NameRecord
 
getFont() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getFont() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getFontAt(short) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the font at the given index number

getFontAtIndex(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the font in use at a particular index.

getFontFamily(String) - Method in class loci.formats.FormatReader

Retrieves an FontFamily enumeration
 value for the given String.

getFontFamily() - Method in class ome.xml.model.Shape
 
getFontHeight() - Method in class loci.poi.hssf.record.FontRecord

gets the height of the font in 1/20th point units

getFontHeight() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height in unit's of 1/20th of a point.

getFontHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the font height

getFontIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the FONT record (which font to use 0 based)

getFontIndex() - Method in class loci.poi.hssf.record.FontIndexRecord

Get the font index field for the FontIndex record.

getFontIndex() - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
 
getFontIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle
 
getFontMetrics() - Method in class loci.plugins.util.RecordedImageProcessor
 
getFontMetrics() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics
 
getFontMetrics(Font) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getFontName() - Method in class loci.poi.hssf.record.FontRecord

get the name of the font

getFontName() - Method in class loci.poi.hssf.usermodel.FontDetails
 
getFontName() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the name for the font (i.e.

getFontNameLength() - Method in class loci.poi.hssf.record.FontRecord

get the length of the fontname string

getFontOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Gets the font used in a particular formatting run.

getFontpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getFontRecordAt(int) - Method in class loci.poi.hssf.model.Workbook

gets the font record at the given index in the font table.

getFontRenderContext() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getFontRenderContext() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getFontSize(Integer) - Static method in class loci.formats.FormatTools
 
getFontSize() - Method in class ome.xml.model.Shape
 
getFontStyle(String) - Method in class loci.formats.FormatReader

Retrieves an FontStyle enumeration
 value for the given String.

getFontStyle() - Method in class ome.xml.model.Shape
 
getFooter(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable
 
getFooter() - Method in class loci.poi.hssf.model.Sheet

Returns the FooterRecord.

getFooter() - Method in class loci.poi.hssf.record.FooterRecord

get the footer string

getFooter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document footer.

getFooterLength() - Method in class loci.poi.hssf.record.FooterRecord

get the length of the footer string

getFooterMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getFooterMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the footer margin.

getForceThumbnailsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getForecolorIndex() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the forecolor index field for the AreaFormat record.

getForegroundColor() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the foreground color field for the AreaFormat record.

getFormat() - Method in class loci.formats.FormatHandler
 
getFormat() - Method in interface loci.formats.IFormatHandler

Gets the name of this file format.

getFormat(String) - Method in class loci.formats.ImageReader

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageReader
 
getFormat(String) - Method in class loci.formats.ImageWriter

Gets a string describing the file format for the given file.

getFormat() - Method in class loci.formats.ImageWriter
 
getFormat() - Method in class loci.formats.ReaderWrapper
 
getFormat() - Method in class loci.formats.WriterWrapper
 
getFormat(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getFormat() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "format"
 field.

getFormat() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getFormat(String, boolean) - Method in class loci.poi.hssf.model.Workbook

Returns a format index that matches the passed in format.

getFormat() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the format field for the LineFormat record.

getFormat(String) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format index that matches the given format string.

getFormat(short) - Method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the format string that matches the given format index

getFormatFlags() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the format flags field for the AreaFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.AreaRecord

Get the format flags field for the Area record.

getFormatFlags() - Method in class loci.poi.hssf.record.BarRecord

Get the format flags field for the Bar record.

getFormatFlags() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the format flags field for the DataFormat record.

getFormatFlags() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Get the format flags field for the SeriesLabels record.

getFormatID() - Method in class loci.poi.hpsf.Section

Returns the format ID.

getFormatIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the index to the Format record (which FORMAT to use 0-based)

getFormatIndex() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Get the format index field for the NumberFormatIndex record.

getFormatLine(PrintFormatTable.PrintStyles, String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getFormatName() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getFormatRun(int) - Method in class loci.poi.hssf.record.UnicodeString
 
getFormatRunCount() - Method in class loci.poi.hssf.record.UnicodeString
 
getFormats() - Method in class loci.poi.hssf.model.Workbook

Returns the list of FormatRecords in the workbook.

getFormatString() - Method in class loci.poi.hssf.record.FormatRecord

get the format string

getFormatted() - Method in class loci.poi.hssf.record.RowRecord

get whether the row has been formatted (even if its got all blank cells)

getFormattingRunLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the formatting run length field for the TextObjectBase record.

getFormulaOfLink() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the formula of link field for the LinkedData record.

getFormulaRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getFormulaTokens() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
 
getFrame(int, int) - Method in class loci.formats.in.PrairieMetadata

Gets the Frame at the given (cycle and index).

getFrame(int) - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the Frame with the given index.

getFramesPerSecond() - Method in class loci.formats.FormatWriter
 
getFramesPerSecond() - Method in interface loci.formats.IFormatWriter

Gets the frames per second to use when writing.

getFramesPerSecond() - Method in class loci.formats.ImageWriter
 
getFramesPerSecond() - Method in class loci.formats.WriterWrapper
 
getFreezePanes() - Method in class loci.poi.hssf.record.WindowTwoRecord

get whether the window should freeze panes

getFreezePanesNoSplit() - Method in class loci.poi.hssf.record.WindowTwoRecord

freeze unsplit panes or not

getFrequencyMultiplication() - Method in class ome.xml.model.Laser
 
getFromCell() - Method in class loci.poi.hssf.util.RangeAddress
 
getFromCompressedUnicode(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Read 8 bit data (in ISO-8859-1 codepage) into a (unicode) Java
 String and return.

getFromUnicodeBE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian
  format (most important byte first), return a Java String representation
  of it.

getFromUnicodeBE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in big endian
  format (most important byte first), return a Java String representation
  of it.

getFromUnicodeLE(byte[], int, int) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in Little Endian
  format (most important byte last), return a Java String representation
  of it.

getFromUnicodeLE(byte[]) - Static method in class loci.poi.util.StringUtil

Given a byte array of 16-bit unicode characters in little endian
  format (most important byte last), return a Java String representation
  of it.

getFullPrecision() - Method in class loci.poi.hssf.record.PrecisionRecord

get whether to use full precision or just skew all you figures all to hell.

getFunction() - Method in class mdbtools.dbengine.sql.FunctionDef
 
getFunctionIndex() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getGain() - Method in class loci.formats.in.MetamorphHandler
 
getGain(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth gain for this Frame.

getGain() - Method in class ome.xml.model.Detector
 
getGain() - Method in class ome.xml.model.DetectorSettings
 
getGains() - Method in class loci.formats.in.ND2Handler
 
getGlobalCRC() - Method in class loci.common.CRC
 
getGlobalMeta(String) - Method in class loci.formats.FormatReader

Gets a value from the global metadata table.

getGlobalMetadata() - Method in class loci.formats.FormatReader
 
getGlobalMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing the metadata field/value pairs from
 the current file.

getGlobalMetadata() - Method in class loci.formats.ImageReader
 
getGlobalMetadata() - Method in class loci.formats.in.LeicaHandler
 
getGlobalMetadata() - Method in class loci.formats.ReaderWrapper
 
getGreen(int) - Method in class loci.formats.gui.Index16ColorModel
 
getGreen(int) - Method in class loci.formats.gui.SignedColorModel
 
getGreen(Object) - Method in class loci.formats.gui.SignedColorModel
 
getGreen(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getGreen(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getGreen() - Method in class loci.poi.ddf.EscherRGBProperty
 
getGreen() - Method in class ome.xml.model.primitives.Color

Returns the green component of this color.

getGreens() - Method in class loci.formats.gui.Index16ColorModel

Return the array of green color components.

getGridset() - Method in class loci.poi.hssf.record.GridsetRecord

get whether the gridlines are shown during printing.

getGridsetRecord() - Method in class loci.poi.hssf.model.Sheet

Gets the gridset record for this sheet.

getGroupBy(int) - Method in class mdbtools.dbengine.sql.Select
 
getGroupByCount() - Method in class mdbtools.dbengine.sql.Select
 
getGroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getGuardBits() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets guardBits

getHandle(String) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from the given file.

getHandle(String, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHandle(String, boolean, boolean) - Static method in class loci.common.Location

Gets an IRandomAccess object that can read from or write to the given file.

getHashSHA1() - Method in class ome.xml.model.Plane
 
getHCenter() - Method in class loci.poi.hssf.record.HCenterRecord

get whether or not to horizonatally center this sheet.

getHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getHeader(PrintFormatTable.PrintStyles) - Static method in class loci.formats.tools.PrintFormatTable
 
getHeader() - Method in class loci.poi.hssf.model.Sheet

Returns the HeaderRecord.

getHeader() - Method in class loci.poi.hssf.record.HeaderRecord

get the header string

getHeader() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the user model for the document header.

getHeaderColor() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the palette index for the header color

getHeaderLength() - Method in class loci.poi.hssf.record.HeaderRecord

get the length of the header string

getHeaderMargin() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getHeaderMargin() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the header margin.

getHeaderPixelType() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the pixel type as specified in the header.

getHeaders() - Method in class loci.common.IniList

Gets the table names (headers) in the list.

getHeaderSizeC() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of channels the image has as specified in the header.

getHeaderSizeX() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the width of the image as specified in the header.

getHeaderSizeY() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the height of the image as specified in the header.

getHeadingPair() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the heading pair (or null)
 when this method is implemented.


getHeight() - Method in class com.luratech.lwf.lwfDecoder
 
getHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the height of the image.

getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getHeight(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getHeight() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Returns the number of leafs along the vertical direction.

getHeight() - Method in class loci.formats.codec.JPEGTileDecoder
 
getHeight(int) - Method in class loci.formats.in.LegacyND2Reader
 
getHeight() - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.getHeight()

getHeight() - Method in class loci.formats.services.LuraWaveServiceImpl
 
getHeight(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack
 
getHeight() - Method in class loci.plugins.util.BFVirtualStack
 
getHeight() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHeight() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the height of the metafile in EMU's (English Metric Units).

getHeight() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the height field for the AxisParent record.

getHeight() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getHeight() - Method in class loci.poi.hssf.record.ChartRecord

Get the height field for the Chart record.

getHeight() - Method in class loci.poi.hssf.record.RowRecord

get the height of the row

getHeight() - Method in class loci.poi.hssf.record.TextRecord

Get the height field for the Text record.

getHeight() - Method in class loci.poi.hssf.record.WindowOneRecord

get the height of the window

getHeight() - Method in class loci.poi.hssf.usermodel.FontDetails
 
getHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in twips (1/20th of a point)

getHeight() - Method in class loci.poi.hssf.util.RangeAddress
 
getHeight() - Method in class ome.xml.model.Mask
 
getHeight() - Method in class ome.xml.model.Rectangle
 
getHeightBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the height basis field for the FontBasis record.

getHeightInPoints() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the row's height or ff (-1) for undefined/default-height in points (20*getHeight())

getHelpTopicLength() - Method in class loci.poi.hssf.record.NameRecord

gets the help topic length

getHelpTopicText() - Method in class loci.poi.hssf.record.NameRecord

get the help topic text

getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AQUA
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLACK
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.BROWN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORAL
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GOLD
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.LIME
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.MAROON
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PINK
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.PLUM
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.RED
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROSE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TAN
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TEAL
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.WHITE
 
getHexString() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW
 
getHFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and
 tile 't'.

getHFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the horizontal analysis filters to be used in component 'n' and
 tile 't'.

getHH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.Subband

Returns the HH child subband of this subband.

getHH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HH child subband of this subband.

getHidden() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get whether or not these cells are hidden

getHidden() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window is hidden or not

getHidden() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be hidden

getHiddenCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the hidden count or 0 if the DocumentSummaryInformation does not contain a hidden
 count.

getHideObj() - Method in class loci.poi.hssf.record.HideObjRecord

get hide object options

getHistogram() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistogramMax() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistogramMin() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistogramSize() - Method in class loci.plugins.util.RecordedImageProcessor
 
getHistoryBitMask() - Method in class loci.poi.hssf.record.BOFRecord

get the history bit mask (not very useful)

getHL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the HL (horizontal high-pass) child subband of this
 subband.

getHL() - Method in class jj2000.j2k.wavelet.Subband

Returns the HL (horizontal high-pass) child subband of this subband.

getHL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the HL (horizontal high-pass) child subband of this
 subband.

getHorAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the horizontal analysis wavelet filters used in each
 level, for the specified tile-component.

getHorAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the horizontal analysis wavelet filters used in each level, for
 the specified component and tile.

getHorizontalAlignment() - Method in class loci.poi.hssf.record.TextRecord

Get the horizontal alignment field for the Text record.

getHorizontalHold() - Method in class loci.poi.hssf.record.WindowOneRecord

get the horizontal position of the window (in 1/20ths of a point)

getHorizontallyCenter() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determine whether printed output for this sheet will be horizontally centered.

getHorizontalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Return the horizontal resolution.

getHorizontalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Get the horizontalScale field for the PlotGrowth record.

getHorizontalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation

Returns the horizontal position of the split.

getHorizontalSplitTopRow() - Method in class loci.poi.hssf.util.PaneInformation

For a horizontal split returns the top row in the BOTTOM pane.

getHorizontalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getHorWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

This function returns the horizontal wavelet filter relevant to this
 subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.Subband

This function returns the horizontal wavelet filter relevant to this
 subband

getHorWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

This function returns the horizontal wavelet filter relevant to this
 subband

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed high-pass synthesis waveform of the
 filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed high-pass synthesis waveform of the
 filter, which is the high-pass filter.

getHPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed high-pass synthesis waveform of the filter,
 which is the high-pass filter.

getHPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent high-pass synthesis waveform of a
 cascade of filters, given the syhthesis waveform of the
 previous stage.

gethref() - Method in class ome.xml.model.External
 
getHResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getHResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the horizontal resolution.

getHtmlFooter() - Static method in class loci.formats.tools.PrintFormatTable
 
getHtmlFormatLine(String, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getHtmlHeader() - Static method in class loci.formats.tools.PrintFormatTable
 
getHumidity() - Method in class ome.xml.model.ImagingEnvironment
 
getICCProfile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the ICC color profile in this color specification box.

getIconic() - Method in class loci.poi.hssf.record.WindowOneRecord

get whether the window has been iconized or not

getId() - Method in class loci.plugins.in.ImporterOptions
 
getId() - Method in class loci.poi.ddf.EscherProperty
 
getID() - Method in class loci.poi.hpsf.Property

Returns the property's ID.

getId() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the id field for the SeriesText record.

getID() - Method in class loci.tests.testng.FormatReaderTest
 
getID() - Method in class ome.xml.model.Annotation
 
getID() - Method in class ome.xml.model.AnnotationRef
 
getID() - Method in class ome.xml.model.Channel
 
getID() - Method in class ome.xml.model.ChannelRef
 
getID() - Method in class ome.xml.model.Dataset
 
getID() - Method in class ome.xml.model.DatasetRef
 
getID() - Method in class ome.xml.model.Detector
 
getID() - Method in class ome.xml.model.DetectorSettings
 
getID() - Method in class ome.xml.model.Dichroic
 
getID() - Method in class ome.xml.model.DichroicRef
 
getID() - Method in class ome.xml.model.Experiment
 
getID() - Method in class ome.xml.model.Experimenter
 
getID() - Method in class ome.xml.model.ExperimenterGroup
 
getID() - Method in class ome.xml.model.ExperimenterGroupRef
 
getID() - Method in class ome.xml.model.ExperimenterRef
 
getID() - Method in class ome.xml.model.ExperimentRef
 
getID() - Method in class ome.xml.model.Filter
 
getID() - Method in class ome.xml.model.FilterRef
 
getID() - Method in class ome.xml.model.FilterSet
 
getID() - Method in class ome.xml.model.FilterSetRef
 
getID() - Method in class ome.xml.model.Image
 
getID() - Method in class ome.xml.model.ImageRef
 
getID() - Method in class ome.xml.model.Instrument
 
getID() - Method in class ome.xml.model.InstrumentRef
 
getID() - Method in class ome.xml.model.Leader
 
getID() - Method in class ome.xml.model.LightSource
 
getID() - Method in class ome.xml.model.LightSourceSettings
 
getID() - Method in class ome.xml.model.MicrobeamManipulation
 
getID() - Method in class ome.xml.model.MicrobeamManipulationRef
 
getID() - Method in class ome.xml.model.Objective
 
getID() - Method in class ome.xml.model.ObjectiveSettings
 
getID() - Method in class ome.xml.model.Pixels
 
getID() - Method in class ome.xml.model.Plate
 
getID() - Method in class ome.xml.model.PlateAcquisition
 
getID() - Method in class ome.xml.model.PlateRef
 
getID() - Method in class ome.xml.model.Project
 
getID() - Method in class ome.xml.model.ProjectRef
 
getID() - Method in class ome.xml.model.Pump
 
getID() - Method in class ome.xml.model.Reagent
 
getID() - Method in class ome.xml.model.ReagentRef
 
getID() - Method in class ome.xml.model.Reference

Retrieves the reference's target object ID.

getID() - Method in class ome.xml.model.ROI
 
getID() - Method in class ome.xml.model.ROIRef
 
getID() - Method in class ome.xml.model.Screen
 
getID() - Method in class ome.xml.model.Shape
 
getID() - Method in class ome.xml.model.Well
 
getID() - Method in class ome.xml.model.WellSample
 
getID() - Method in class ome.xml.model.WellSampleRef
 
getIdInfo() - Method in class loci.plugins.in.ImporterOptions
 
getIdLocation() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIdMap() - Static method in class loci.common.Location

Return the id mapping.

getIdName() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getIFD(long) - Method in class loci.formats.tiff.TiffParser

Gets the IFD stored at the given offset.

getIFD() - Method in class ome.xml.model.TiffData
 
getIFDIntArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in int format
 from this IFD, performing some error checking.

getIFDIntValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD,
 or -1 if the given directory does not exist.

getIFDIntValue(int, int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in int format from this IFD,
 performing some error checking.

getIFDLongArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in long format
 from this IFD, performing some error checking.

getIFDLongValue(int, long) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in long format from this IFD,
 performing some error checking.

getIFDOffsets() - Method in class loci.formats.tiff.TiffParser

Gets the offsets to every IFD in the file.

getIFDRationalValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value in rational format from this IFD,
 performing some error checking.

getIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's image planes.

getIFDs() - Method in class loci.formats.tiff.TiffParser

Returns all IFDs in the file.

getIFDShortArray(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry values in short format
 from this IFD, performing some error checking.

getIFDStringValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string from this IFD,
 performing some error checking.

getIFDTagName(int) - Static method in class loci.formats.tiff.IFD

Gets the name of the IFD tag encoded by the given number.

getIFDTextValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value as a string (regardless of type).

getIFDValue(int) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD.

getIFDValue(int, Class) - Method in class loci.formats.tiff.IFD

Gets the given directory entry value from this IFD,
 performing some error checking.

getIFDValue(TiffIFDEntry) - Method in class loci.formats.tiff.TiffParser

Retrieve the value corresponding to the given TiffIFDEntry.

getIlluminationType(String) - Method in class loci.formats.FormatReader

Retrieves an IlluminationType enumeration
 value for the given String.

getIlluminationType() - Method in class ome.xml.model.Channel
 
getImage() - Method in class loci.formats.gui.ImageViewer

Gets the currently displayed image.

getImage(byte[], int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getImage(int) - Method in class ome.xml.model.OME
 
getImageAcquisitionDate(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageAcquisitionDate(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageAcquisitionDate(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageAcquisitionDate(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getImageAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageCount() - Method in class loci.formats.ChannelMerger
 
getImageCount() - Method in class loci.formats.ChannelSeparator
 
getImageCount() - Method in class loci.formats.FileStitcher
 
getImageCount() - Method in class loci.formats.FormatReader
 
getImageCount() - Method in interface loci.formats.IFormatReader

Determines the number of image planes in the current file.

getImageCount() - Method in class loci.formats.ImageReader
 
getImageCount() - Method in class loci.formats.ReaderWrapper
 
getImageCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getImageCount() - Method in class ome.xml.meta.AggregateMetadata
 
getImageCount() - Method in class ome.xml.meta.DummyMetadata
 
getImageCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageCreationDate() - Method in class loci.formats.in.BaseTiffReader

Retrieves the image creation date.

getImageCreationDate(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getImageDescription() - Method in class loci.tests.testng.Configuration
 
getImageDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageDimension(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the dimnsion of the imageIndexth image.

getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageExperimentRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageExperimentRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageExperimentRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageExperimentRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageID(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageIndex() - Method in class loci.formats.gui.ImageViewer

Gets the index of the currently displayed image.

getImageInstrumentRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageInstrumentRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageInstrumentRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageInstrumentRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageLength() - Method in class loci.formats.tiff.IFD

Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.

getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getImageMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getImageMicrobeamManipulationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageMicrobeamManipulationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageName() - Method in class loci.formats.in.MetamorphHandler
 
getImageName() - Method in class loci.tests.testng.Configuration
 
getImageName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageName(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image offset of the imageIndexth image.

getImageReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getImageROIRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageROIRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getImageROIRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageROIRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImageROIRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImageROIRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getImageROIRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImageROIRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImagesPerFile(String, IFormatReader) - Static method in class loci.formats.FormatTools
 
getImageType() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the image type.

getImageType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getImageTypes(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getImageWidth() - Method in class loci.formats.tiff.IFD

Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.

getImagingDevice() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the imaging device associated with this Frame.

getImagingEnvironment() - Method in class ome.xml.model.Image
 
getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.DummyMetadata
 
getImagingEnvironmentAirPressure(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImagingEnvironmentAirPressure(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.DummyMetadata
 
getImagingEnvironmentCO2Percent(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImagingEnvironmentCO2Percent(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.DummyMetadata
 
getImagingEnvironmentHumidity(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImagingEnvironmentHumidity(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.AggregateMetadata
 
getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.DummyMetadata
 
getImagingEnvironmentTemperature(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getImagingEnvironmentTemperature(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getImgHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall height of the image in pixels, for the given
 resolution level.

getImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image height in the reference grid.

getImgHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall height of the image in pixels.

getImgHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall height of the image in pixels.

getImgHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall height of the image in pixels, for the given
 resolution level.

getImgHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall height of the image in pixels, for the given
 resolution level.

getImgRes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the image resolution level to reconstruct from the
 codestream.

getImgULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid at the specified
 resolution level.

getImgULX() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the horizontal upper-left coordinate of the image in the
 reference grid.

getImgULX() - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.image.Tiler

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULX(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid at the specified
 resolution level.

getImgULX(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid at the specified
 resolution level.

getImgULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid at the specified
 resolution level.

getImgULY() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the vertical upper-left coordinate of the image in the reference
 grid.

getImgULY() - Method in interface jj2000.j2k.image.ImgData

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.image.Tiler

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid.

getImgULY(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid at the specified
 resolution level.

getImgULY(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the image origin, the top-left
 corner, in the canvas system, on the reference grid at the specified
 resolution level.

getImgWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall width of the image in pixels, for the given (image)
 resolution level.

getImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the image width in the reference grid.

getImgWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall width of the image in pixels.

getImgWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall width of the image in pixels.

getImgWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall width of the image in pixels, for the given
 resolution level.

getImgWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall width of the image in pixels, for the given
 resolution level.

getImmersion(String) - Method in class loci.formats.FormatReader

Retrieves an Immersion enumeration
 value for the given String.

getImmersion() - Method in class loci.formats.in.ND2Handler
 
getImmersion() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the immersion from the objective lens string.

getImmersion() - Method in class ome.xml.model.Objective
 
getImplementationType(int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL
 (full-page based transform).

getImplementationType(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the implementation type of this wavelet transform, WT_IMPL_FULL
 (full-page based transform).

getImplementationType(int) - Method in interface jj2000.j2k.wavelet.WaveletTransform

Returns the implementation type of this wavelet transform
 (WT_IMPL_LINE or WT_IMPL_FRAME) for the specified component, 
 in the current tile.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in
 this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
 WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this
 class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
 WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the implementation type of this filter, as defined in this
 class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
 WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the implementation type of this filter, as defined in this
 class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
 WT_FILTER_FLOAT_CONVOL.

getImplType() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the implementation type of this filter, as defined in
 this class, such as WT_FILTER_INT_LIFT, WT_FILTER_FLOAT_LIFT,
 WT_FILTER_FLOAT_CONVOL.

getIndent() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get indention (not sure of the units, think its spaces)

getIndention() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the number of spaces to indent the text in the cell

getIndentionOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the indent options bitmask  (see corresponding bit getters that reference
 this field)

getIndex() - Method in class loci.formats.cache.CacheEvent

Gets the index relevant to the cache update, if any.

getIndex(int, int, int) - Method in class loci.formats.ChannelMerger
 
getIndex(int, int, int) - Method in class loci.formats.ChannelSeparator
 
getIndex(int, int, int) - Method in class loci.formats.DimensionSwapper
 
getIndex(int, int, int) - Method in class loci.formats.FileStitcher
 
getIndex(int, int, int) - Method in class loci.formats.FormatReader
 
getIndex(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding
 to the given Z, C and T coordinates.

getIndex(String, int, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the rasterized index corresponding
 to the given Z, C and T coordinates.

getIndex(int, int, int) - Method in interface loci.formats.IFormatReader

Gets the rasterized index corresponding
 to the given Z, C and T coordinates.

getIndex(int, int, int) - Method in class loci.formats.ImageReader
 
getIndex() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getIndex() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the index associated with this Frame.

getIndex(int, int, int) - Method in class loci.formats.ReaderWrapper
 
getIndex(Double, Double, Double, Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getIndex() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Get the index field for the SeriesIndex record.

getIndex() - Method in class loci.poi.hssf.record.StyleRecord

get the entire index field (including the type) (see bit getters that reference this method)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the index within the HSSFWorkbook (sequence within the collection of ExtnededFormat objects)

getIndex() - Method in class loci.poi.hssf.usermodel.HSSFFont

get the index within the HSSFWorkbook (sequence within the collection of Font objects)

getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AQUA
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLACK
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.BROWN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORAL
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GOLD
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.LIME
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.MAROON
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PINK
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.PLUM
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.RED
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROSE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TAN
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TEAL
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.WHITE
 
getIndex() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW
 
getIndex() - Method in class loci.poi.poifs.property.Property

get the index for this Property

getIndex(Object) - Method in class loci.poi.util.IntMapper
 
getIndex() - Method in class ome.xml.model.WellSample
 
getIndexCode() - Method in class loci.poi.hssf.record.FormatRecord

get the format index code (for built in formats)

getIndexColorModel() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
getIndexCount() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the number of recorded indices at this Sequence.

getIndexedImage() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
getIndexHash() - Static method in class loci.poi.hssf.util.HSSFColor

this function returns all colors in a hastable.

getIndexMax() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the maximum index value.

getIndexMin() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the minimum index value.

getIndexNumberFmtRecord() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the index number fmt record field for the LinkedData record.

getIndexOfColorValue() - Method in class loci.poi.hssf.record.TextRecord

Get the index of color value field for the Text record.

getIndexOfFormattingRun(int) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

The index within the string to which the specified formatting run applies.

getIndexToFirstSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to first sheet from supbook

getIndexToFontTable() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the index to font table field for the FontBasis record.

getIndexToLastSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to last sheet in supbook

getIndexToSheet() - Method in class loci.poi.hssf.record.NameRecord

Convenience method to retrieve the index the name refers to.

getIndexToSupBook() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

gets the index to sup book

getInfo() - Method in class loci.formats.in.SDTReader

Gets object containing SDT header information.

getInfo() - Method in class loci.plugins.prefs.Option

Gets documentation about the option.

getInfo(String) - Method in class loci.plugins.prefs.OptionsList

Gets the documentation for the option with the given key.

getInfoRecordAt(int) - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getINI() - Method in class loci.tests.testng.Configuration
 
getInputOrder() - Method in class loci.formats.DimensionSwapper
 
getInputOrder(int) - Method in class loci.plugins.in.ImporterOptions
 
getInputStream() - Method in class loci.common.NIOInputStream

Returns the underlying InputStream.

getInputStream() - Method in class loci.common.ZipHandle

Returns the DataInputStream corresponding to the backing Zip entry.

getInputStream(String) - Method in interface loci.formats.services.POIService

Retrieve an InputStream corresponding to the given file name.

getInputStream(String) - Method in class loci.formats.services.POIServiceImpl
 
getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

Returns a shared instance of a BaselineTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

Returns a shared instance of an EXIFGPSTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

Returns the shared instance of
 EXIFInteroperabilityTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet

Returns a shared instance of an EXIFParentTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

Returns a shared instance of an EXIFTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet

Returns a shared instance of a FaxTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet

Returns a shared instance of a GeoTIFFTagSet.

getInstance() - Static method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
 
getInstance() - Static method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
 
getInstance() - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
 
getInstance(Class<T>) - Method in class loci.common.services.ServiceFactory

Retrieves an instance of a given service.

getInstance(int) - Static method in class loci.formats.gui.TwoChannelColorSpace
 
getInstance() - Method in class loci.poi.ddf.EscherRecord

Returns the instance part of the option record.

getInstance() - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the singleton instance of the default SectionIDMap.

getInstance() - Static method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getInstance(int) - Static method in class loci.poi.util.BitFieldFactory
 
getInstitution() - Method in class ome.xml.model.Experimenter
 
getInstrument() - Method in class ome.xml.model.Detector
 
getInstrument() - Method in class ome.xml.model.Dichroic
 
getInstrument() - Method in class ome.xml.model.Filter
 
getInstrument() - Method in class ome.xml.model.FilterSet
 
getInstrument() - Method in class ome.xml.model.LightSource
 
getInstrument() - Method in class ome.xml.model.Objective
 
getInstrument(int) - Method in class ome.xml.model.OME
 
getInstrumentCount() - Method in class ome.xml.meta.AggregateMetadata
 
getInstrumentCount() - Method in class ome.xml.meta.DummyMetadata
 
getInstrumentCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getInstrumentCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getInstrumentID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getInstrumentID(int) - Method in class ome.xml.meta.DummyMetadata
 
getInstrumentID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getInstrumentID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an int value from a byte array

getInt(byte[]) - Static method in class loci.poi.util.LittleEndian

get an int value from the beginning of a byte array

getIntArray() - Method in class loci.plugins.util.RecordedImageProcessor
 
getIntArrayElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets the integer array from an IIOMetadataNode.

getIntegration() - Method in class ome.xml.model.DetectorSettings
 
getIntElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its integer value from an IIOMetadataNode.

getIntellectualProperty() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the IntellectualProperty flag.

getInterleaved() - Method in class ome.xml.model.Pixels
 
getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder

Returns the specified code-block in the current tile for the specified
 component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.quantization.dequantizer.CBlkQuantDataSrcDec

Returns the specified code-block in the current tile for the specified
 component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.quantization.dequantizer.StdDequantizer

Returns the specified code-block in the current tile for the specified
 component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the specified code-block in the current tile for the specified
 component (as a reference or copy).

getInternCodeBlock(int, int, int, SubbandSyn, DataBlk) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the specified code-block in the current tile for the specified
 component (as a reference or copy).

getInternCompData(DataBlk, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns, in the blk argument, the block of image data containing the
 specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in interface jj2000.j2k.image.BlkImgDataSrc

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Apply the component transformation associated with the current tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataConverter

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component, using the
 'transfer type' defined in the block given as argument.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns, in the blk argument, the block of image data containing the
 specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Apply the inverse component transformation associated with the current
 tile.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.image.Tiler

Returns, in the blk argument, a block of image data containing the
 specifed rectangular area, in the specified component.

getInternCompData(DataBlk, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns a block of image data containing the specifed rectangular area,
 in the specified component, as a reference to the internal buffer (see
 below).

getInterpolate() - Method in class loci.plugins.util.RecordedImageProcessor
 
getInterpolatedPixel(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
 
getInts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getInts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of signed integers, one per channel.

getIris() - Method in class ome.xml.model.Objective
 
getItalic() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use italics or not

getIteration() - Method in class loci.poi.hssf.record.IterationRecord

get whether or not to iterate for calculations

getIterations() - Method in class loci.poi.hssf.record.CalcCountRecord

get the number of iterations to perform

getIterator() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getIterator() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getIterator() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getJavaDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a excel date, converts it into a Date.

getJavaDate(double, boolean) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given an Excel date with either 1900 or 1904 date windowing,
  converts it to a java.util.Date.

getJDKImageReaderWriterSPI(ServiceRegistry, String, boolean) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getJustifyLast() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

Dunno.

getKerSpecType(int) - Method in class jj2000.j2k.wavelet.WTFilterSpec

Returns the type of specification for the filters in the specified
 component and tile.

getKey() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag

Return the string corresponding to the given ID.

getKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation
 
getKey() - Method in class loci.plugins.prefs.Option

Gets the option's key name.

getKeyboardShortcut() - Method in class loci.poi.hssf.record.NameRecord

returns the keyboard shortcut

getKeyForValue(Object) - Method in class loci.poi.util.BinaryTree

Returns the key to which this map maps the specified value.

getKeywords() - Method in class loci.poi.hpsf.SummaryInformation

Returns the keywords (or null).

getLabel() - Method in class loci.plugins.prefs.Option

Gets label describing the option.

getLabel(String) - Method in class loci.plugins.prefs.OptionsList

Gets the label for the option with the given key.

getLabelColorRgb() - Method in class loci.poi.hssf.record.TickRecord

Get the label color rgb field for the Tick record.

getLabelFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the label frequency field for the CategorySeriesAxis record.

getLabelID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelPosition() - Method in class loci.poi.hssf.record.TickRecord

Get the label position field for the Tick record.

getLabels() - Method in class loci.plugins.config.FlexWidgets
 
getLabels() - Method in interface loci.plugins.config.IFormatWidgets
 
getLabels() - Method in class loci.plugins.config.ND2Widgets
 
getLabels() - Method in class loci.plugins.config.PictWidgets
 
getLabels() - Method in class loci.plugins.config.QTWidgets
 
getLabels() - Method in class loci.plugins.config.SDTWidgets
 
getLabels() - Method in class loci.plugins.config.TiffDelegateWidgets
 
getLabelStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelX(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelX(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLabelY(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLabelY(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLabelY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLabelY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLandscape() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getLandscape() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the landscape mode.

getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserFrequencyMultiplication(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserFrequencyMultiplication(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserLaserMedium(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserLaserMedium(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserLaserMedium(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserLaserMedium(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserMedium(String) - Method in class loci.formats.FormatReader

Retrieves an LaserMedium enumeration
 value for the given String.

getLaserMedium() - Method in class ome.xml.model.Laser
 
getLaserModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserPockelCell(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserPockelCell(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserPockelCell(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserPockelCell(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserPower() - Method in class loci.formats.in.PrairieMetadata

Gets the laserPower_0 recorded in the configuration.

getLaserPower(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserPower(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserPower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserPower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserPulse(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserPulse(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserPulse(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserPulse(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserPump(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserPump(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserPump(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserPump(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserRepetitionRate(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserRepetitionRate(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserTuneable(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserTuneable(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserTuneable(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserTuneable(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserType(String) - Method in class loci.formats.FormatReader

Retrieves an LaserType enumeration
 value for the given String.

getLaserType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLaserWavelength(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLaserWavelength(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLaserWavelength(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLaserWavelength(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLast() - Method in class loci.formats.FilePattern
 
getLast() - Method in class loci.formats.FilePatternBlock
 
getLastAuthor() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last author (or null).

getLastBodyBuf() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the buffer of the body of the last encoded packet.

getLastBodyLen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the length of the body of the last encoded packet, in
 bytes.

getLastCellNum() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getLastCellNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of the last cell contained in this row PLUS ONE.

getLastChild() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getLastCol() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last col number for the sheet

getLastCol() - Method in class loci.poi.hssf.record.RowRecord

get the logical col number for the last cell this row plus one (0 based index)

getLastColumn() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the last column this record defines formatting info for

getLastColumn() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getLastColumn() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getLastColumn() - Method in class loci.poi.hssf.record.MulBlankRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.MulRKRecord

ending column (last cell this holds in the row)

getLastColumn() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getLastColumn() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getLastColumnRaw() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getLastMSOSPID() - Method in class loci.poi.ddf.EscherDgRecord

The last shape id used in this drawing group.

getLastName() - Method in class ome.xml.model.Experimenter
 
getLastPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getLastPrinted() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last printed time (or null).

getLastRow() - Method in class loci.poi.hssf.record.DimensionsRecord

get the last row number for the sheet

getLastRow() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getLastRow() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getLastRow() - Method in class loci.poi.hssf.record.SelectionRecord.Reference
 
getLastRow() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getLastRowAdd1() - Method in class loci.poi.hssf.record.IndexRecord
 
getLastRowNum() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getLastRowNum() - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the last row on the sheet

getLastSaveDateTime() - Method in class loci.poi.hpsf.SummaryInformation

Returns the last save time (or null).

getLatestVersion() - Method in interface loci.formats.services.OMEXMLService

Retrieves the latest supported version of the OME-XML schema.

getLatestVersion() - Method in class loci.formats.services.OMEXMLServiceImpl
 
getLayers() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets layers

getLeaderCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLeaderCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getLeaderCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLeaderCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLeafChildCount() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
getLeft() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the left side of the footer.

getLeft() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the left side of the header.

getLeft() - Method in class mdbtools.dbengine.sql.Condition
 
getLeft() - Method in class mdbtools.dbengine.sql.Equation
 
getLeft() - Method in class mdbtools.dbengine.sql.Join
 
getLeftBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getLeftBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the left border color

getLeftCol() - Method in class loci.poi.hssf.model.Sheet
 
getLeftCol() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the leftmost column displayed in the window

getLeftCol() - Method in class loci.poi.hssf.usermodel.HSSFSheet

The left col in the visible view when the sheet is 
 first viewed after opening it in a viewer

getLeftColumn() - Method in class loci.poi.hssf.record.PaneRecord

Get the left column field for the Pane record.

getLeftRowGutter() - Method in class loci.poi.hssf.record.GutsRecord

get the size of the gutter that appears at the left of the rows

getLeftToRight() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getLeftToRight() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the left to right print order.

getLength() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box length.

getLength() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getLength() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer

Returns the current length of the buffer, in bytes.

getLength() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the current length of the entire bit stream.

getLength() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder

Returns the length of the header.

getLength() - Method in class loci.poi.hssf.record.RecordInputStream
 
getLength() - Method in class loci.poi.poifs.storage.RawDataBlock
 
getLength() - Method in class ome.xml.model.BinData
 
getLengths() - Method in class loci.formats.cache.CacheStrategy
 
getLengths() - Method in interface loci.formats.cache.ICacheStrategy

Gets the lengths of all the axes.

getLenRefSubexpression() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getLensNA() - Method in class ome.xml.model.Objective
 
getLetter() - Method in class loci.formats.ResourceNamer

Returns a String representing a single letter (in the case
 where the class instance has been initialized with a resource count lower
 than 26) or a concatenation of two letters (if resource count is higher
 than 26).

getLevels(int) - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the decomposition number of levels in component 'n' and tile
 't'.

getLH() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LH (vertical high-pass) child subband of this
 subband.

getLH() - Method in class jj2000.j2k.wavelet.Subband

Returns the LH (vertical high-pass) child subband of this subband.

getLH() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LH (vertical high-pass) child subband of this
 subband.

getLicenseCode() - Method in interface loci.formats.services.LuraWaveService

Retrieves the current license code as a string.

getLicenseCode() - Method in class loci.formats.services.LuraWaveServiceImpl
 
getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightEmittingDiodeID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightEmittingDiodeID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightEmittingDiodeLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightEmittingDiodeLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightEmittingDiodeManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightEmittingDiodeManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightEmittingDiodeModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightEmittingDiodeModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightEmittingDiodePower(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightEmittingDiodePower(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightEmittingDiodeSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightEmittingDiodeSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightPath() - Method in class ome.xml.model.Channel
 
getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightPathDichroicRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightPathDichroicRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightPathEmissionFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightPathEmissionFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightPathEmissionFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightPathEmissionFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightPathExcitationFilterRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightPathExcitationFilterRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightPathExcitationFilterRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightPathExcitationFilterRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightSource(int) - Method in class loci.tests.testng.Configuration
 
getLightSource(int) - Method in class ome.xml.model.Instrument
 
getLightSource() - Method in class ome.xml.model.LightSourceSettings
 
getLightSourceCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightSourceCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getLightSourceCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightSourceCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLightSourceSettings() - Method in class ome.xml.model.Channel
 
getLightSourceSettings(int) - Method in class ome.xml.model.MicrobeamManipulation
 
getLightSourceType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLightSourceType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLightSourceType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLightSourceType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLimit() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getLine(double, double, double, double) - Method in class loci.plugins.util.RecordedImageProcessor
 
getLineCap(String) - Method in class loci.formats.FormatReader

Retrieves an LineCap enumeration
 value for the given String.

getLineCap() - Method in class ome.xml.model.Shape
 
getLineColor() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line color field for the LineFormat record.

getLineCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the line count or 0 if the DocumentSummaryInformation does not contain a line count.

getLineFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineMarkerEnd(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineMarkerEnd(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineMarkerEnd(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineMarkerEnd(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineMarkerStart(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineMarkerStart(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineMarkerStart(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineMarkerStart(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLinePattern() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the line pattern field for the LineFormat record.

getLinesPerFrame() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the lines per frame for this Frame.

getLineStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineStyle() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
getLineStyleColor() - Method in class loci.poi.hssf.usermodel.HSSFShape

The color applied to the lines of this shape.

getLineText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineWidth() - Method in class jj2000.j2k.util.MsgPrinter

Returns the line width that is used for formatting.

getLineWidth() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
getLineX1(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineX1(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineX1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineX1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineX2(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineX2(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineX2(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineX2(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineY1(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineY1(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineY1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineY1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLineY2(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLineY2(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLineY2(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLineY2(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLink1() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 1 field for the ObjectLink record.

getLink2() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Get the link 2 field for the ObjectLink record.

getLinkedAnnotation(int) - Method in class ome.xml.model.Annotation
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Channel
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Dataset
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Experimenter
 
getLinkedAnnotation(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Image
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Pixels
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Plane
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Plate
 
getLinkedAnnotation(int) - Method in class ome.xml.model.PlateAcquisition
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Project
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Reagent
 
getLinkedAnnotation(int) - Method in class ome.xml.model.ROI
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Screen
 
getLinkedAnnotation(int) - Method in class ome.xml.model.Well
 
getLinkedAnnotation(int) - Method in class ome.xml.model.WellSample
 
getLinkedChannel(int) - Method in class ome.xml.model.Annotation
 
getLinkedChannel(int) - Method in class ome.xml.model.FilterSet
 
getLinkedDataset(int) - Method in class ome.xml.model.Annotation
 
getLinkedDataset(int) - Method in class ome.xml.model.Experimenter
 
getLinkedDataset(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedDataset(int) - Method in class ome.xml.model.Image
 
getLinkedDataset(int) - Method in class ome.xml.model.Project
 
getLinkedDichroic() - Method in class ome.xml.model.FilterSet
 
getLinkedDichroic() - Method in class ome.xml.model.LightPath
 
getLinkedEmissionFilter(int) - Method in class ome.xml.model.FilterSet
 
getLinkedEmissionFilter(int) - Method in class ome.xml.model.LightPath
 
getLinkedExcitationFilter(int) - Method in class ome.xml.model.FilterSet
 
getLinkedExcitationFilter(int) - Method in class ome.xml.model.LightPath
 
getLinkedExperiment(int) - Method in class ome.xml.model.Experimenter
 
getLinkedExperiment() - Method in class ome.xml.model.Image
 
getLinkedExperimenter(int) - Method in class ome.xml.model.Annotation
 
getLinkedExperimenter() - Method in class ome.xml.model.Dataset
 
getLinkedExperimenter() - Method in class ome.xml.model.Experiment
 
getLinkedExperimenter(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedExperimenter() - Method in class ome.xml.model.Image
 
getLinkedExperimenter() - Method in class ome.xml.model.MicrobeamManipulation
 
getLinkedExperimenter() - Method in class ome.xml.model.Project
 
getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Annotation
 
getLinkedExperimenterGroup() - Method in class ome.xml.model.Dataset
 
getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Experimenter
 
getLinkedExperimenterGroup() - Method in class ome.xml.model.Image
 
getLinkedExperimenterGroup(int) - Method in class ome.xml.model.Leader
 
getLinkedExperimenterGroup() - Method in class ome.xml.model.Project
 
getLinkedFilterSet() - Method in class ome.xml.model.Channel
 
getLinkedFilterSet(int) - Method in class ome.xml.model.Dichroic
 
getLinkedFilterSetEmissionFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedFilterSetExcitationFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedImage(int) - Method in class ome.xml.model.Annotation
 
getLinkedImage(int) - Method in class ome.xml.model.Dataset
 
getLinkedImage(int) - Method in class ome.xml.model.Experiment
 
getLinkedImage(int) - Method in class ome.xml.model.Experimenter
 
getLinkedImage(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedImage(int) - Method in class ome.xml.model.Instrument
 
getLinkedImage(int) - Method in class ome.xml.model.MicrobeamManipulation
 
getLinkedImage(int) - Method in class ome.xml.model.ROI
 
getLinkedImage() - Method in class ome.xml.model.WellSample
 
getLinkedInstrument() - Method in class ome.xml.model.Image
 
getLinkedLaser(int) - Method in class ome.xml.model.Pump
 
getLinkedLeader(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedLightPath(int) - Method in class ome.xml.model.Dichroic
 
getLinkedLightPathEmissionFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedLightPathExcitationFilter(int) - Method in class ome.xml.model.Filter
 
getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Experimenter
 
getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.Image
 
getLinkedMicrobeamManipulation(int) - Method in class ome.xml.model.ROI
 
getLinkedPixels(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlane(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlate(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlate(int) - Method in class ome.xml.model.Screen
 
getLinkedPlateAcquisition(int) - Method in class ome.xml.model.Annotation
 
getLinkedPlateAcquisition(int) - Method in class ome.xml.model.WellSample
 
getLinkedProject(int) - Method in class ome.xml.model.Annotation
 
getLinkedProject(int) - Method in class ome.xml.model.Dataset
 
getLinkedProject(int) - Method in class ome.xml.model.Experimenter
 
getLinkedProject(int) - Method in class ome.xml.model.ExperimenterGroup
 
getLinkedPump() - Method in class ome.xml.model.Laser
 
getLinkedReagent(int) - Method in class ome.xml.model.Annotation
 
getLinkedReagent() - Method in class ome.xml.model.Well
 
getLinkedROI(int) - Method in class ome.xml.model.Annotation
 
getLinkedROI(int) - Method in class ome.xml.model.Image
 
getLinkedROI(int) - Method in class ome.xml.model.MicrobeamManipulation
 
getLinkedScreen(int) - Method in class ome.xml.model.Annotation
 
getLinkedScreen(int) - Method in class ome.xml.model.Plate
 
getLinkedWell(int) - Method in class ome.xml.model.Annotation
 
getLinkedWell(int) - Method in class ome.xml.model.Reagent
 
getLinkedWellSample(int) - Method in class ome.xml.model.Annotation
 
getLinkedWellSample(int) - Method in class ome.xml.model.Image
 
getLinkedWellSample(int) - Method in class ome.xml.model.PlateAcquisition
 
getLinksDirty() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true if the custom links are dirty.

getLinkType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the link type field for the LinkedData record.

getListAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getListAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getListAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getListAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getListAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getListAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getListAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getListAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getListAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getListAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getListAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getListAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getListAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getListAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getListAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getListAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getListAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getListAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getListAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getListAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getListAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getListAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getListAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getListAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getListAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLL() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.Subband

Returns the LL child subband of this subband.

getLL() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the LL child subband of this subband.

getLoadList(int[]) - Method in class loci.formats.cache.CacheStrategy
 
getLoadList(int[]) - Method in interface loci.formats.cache.ICacheStrategy

Gets the indices of the objects to cache,
 surrounding the object at the given position.

getLoc() - Method in class loci.poi.hssf.model.Sheet

Returns the location pointer to the first record to look for when adding rows/values

getLocation() - Method in class loci.plugins.in.ImporterOptions
 
getLocationFromResourceName(Location, String, int, String) - Method in class loci.formats.ResourceNamer

Creates a new Location instance using the provided parent path and
 child node name.

getLocationInfo() - Method in class loci.plugins.in.ImporterOptions
 
getLocations() - Method in class loci.plugins.in.ImporterOptions
 
getLocked() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the cell's using this style are to be locked

getLocked() - Method in class ome.xml.model.Shape
 
getLogger(Class) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a class name

getLogger(String) - Static method in class loci.poi.util.POILogFactory

Get a logger, based on a String

getLong(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a long value from a byte array

getLong(byte[]) - Static method in class loci.poi.util.LittleEndian

get a long value from the beginning of a byte array

getLongAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLongAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLongAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLongAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLongAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLongAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getLongAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getLongAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getLongAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getLookupTable(ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Convers an Index16ColorModel to a 2D short array.

getLookupTable() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the color lookup table stored in the file, or null if a lookup
 table is not present.

getLossless() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets lossless.

getLossless() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets encodingRate

getLotNumber() - Method in class ome.xml.model.ManufacturerSpec
 
getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the time-reversed low-pass synthesis waveform of the
 filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the time-reversed low-pass synthesis waveform of the
 filter, which is the low-pass filter.

getLPSynthesisFilter() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the time-reversed low-pass synthesis waveform of the filter,
 which is the low-pass filter.

getLPSynWaveForm(float[], float[]) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the equivalent low-pass synthesis waveform of a cascade
 of filters, given the syhthesis waveform of the previous
 stage.

getLUT() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the LUT.

getLutNames() - Method in class loci.formats.in.LeicaHandler
 
getLutUpdateMode() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMagnification(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getMagnification() - Method in class loci.formats.in.ND2Handler
 
getMagnification() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the magnification from the objective lens string.

getMainDefDecompType() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition type.

getMainDefLevels() - Method in class jj2000.j2k.wavelet.WTDecompSpec

Returns the main default decomposition number of levels.

getMajorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the major increment field for the ValueRange record.

getMajorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the major tick type field for the Tick record.

getMajorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit field for the AxisOptions record.

getMajorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the major unit value field for the AxisOptions record.

getManager() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the manager (or null).

getManufacturer() - Method in class ome.xml.model.ManufacturerSpec
 
getMap() - Method in class loci.formats.tools.AmiraParameters
 
getMappedFile(String) - Static method in class loci.common.Location

Gets the random access handle for the given id.

getMappedId(String) - Static method in class loci.common.Location

Gets the actual filename on disk for the given id.

getMargin(short) - Method in class loci.poi.hssf.model.Sheet

Gets the size of the margin in inches.

getMargin() - Method in class loci.poi.hssf.record.BottomMarginRecord

Get the margin field for the BottomMargin record.

getMargin() - Method in class loci.poi.hssf.record.LeftMarginRecord

Get the margin field for the LeftMargin record.

getMargin() - Method in interface loci.poi.hssf.record.Margin

Get the margin field for the Margin.

getMargin() - Method in class loci.poi.hssf.record.RightMarginRecord

Get the margin field for the RightMargin record.

getMargin() - Method in class loci.poi.hssf.record.TopMarginRecord

Get the margin field for the TopMargin record.

getMargin(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the size of the margin in inches.

getMarginBottom() - Method in class loci.poi.hssf.usermodel.HSSFTextbox

Gets the bottom margin within the textbox.

getMarginLeft() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getMarginRight() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getMargins() - Method in class loci.poi.hssf.model.Sheet

Returns the array of margins.

getMarginTop() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getMarker(String) - Method in class loci.formats.FormatReader

Retrieves an Marker enumeration
 value for the given String.

getMarker() - Method in class loci.poi.ddf.EscherBitmapBlip
 
getMarkerEnd() - Method in class ome.xml.model.Line
 
getMarkerEnd() - Method in class ome.xml.model.Polyline
 
getMarkerStart() - Method in class ome.xml.model.Line
 
getMarkerStart() - Method in class ome.xml.model.Polyline
 
getMask() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMask() - Method in class ome.xml.model.BinData
 
getMaskArray() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMaskFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskHeight(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskHeight(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskHeight(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskHeight(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskX(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskX(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMaskY(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMaskY(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMaskY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMaskY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMax() - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile-component

getMax() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxAvailableBytes() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Returns the number of bytes remaining available in the bit stream.

getMaxCBlkHeight() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's height

getMaxCBlkWidth() - Method in class jj2000.j2k.entropy.CBlkSizeSpec

Returns the maximum code-block's width

getMaxChange() - Method in class loci.poi.hssf.record.DeltaRecord

get the maximum change

getMaxCompHeight() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getMaxCompImgHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum height among all components

getMaxCompImgWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the maximum width among all components

getMaxCompWidth() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getMaxFieldCount(Integer) - Static method in class loci.formats.FormatTools
 
getMaximumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the maximum axis value field for the ValueRange record.

getMaximumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the maximum category field for the AxisOptions record.

getMaximumFieldCount() - Method in class ome.xml.model.PlateAcquisition
 
getMaximumSize() - Method in class loci.formats.gui.CacheIndicator
 
getMaxInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each tile for specified component

getMaxInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the maximum value of each component in specified tile

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the maximum number of magnitude bits in any subband in the
 current tile.

getMaxMagBits(int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the maximum number of magnitude bits in any subband of the
 current tile.

getMaxThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMaxTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the rightmost column of tiles.

getMaxTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the bottom row of tiles.

getMaxValue() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getMaxX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the column immediatetely to the
 right of the rightmost column of the image.

getMaxY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the Y coordinate of the row immediately below the
 bottom row of the image.

getMD5() - Method in class loci.tests.testng.Configuration
 
getMedium(String) - Method in class loci.formats.FormatReader

Retrieves an Medium enumeration
 value for the given String.

getMedium() - Method in class ome.xml.model.ObjectiveSettings
 
getMemoFile(String) - Method in class loci.formats.Memoizer

Constructs a File object from setId string.

getMemory() - Method in class loci.tests.testng.Configuration
 
getMemoryUsage() - Method in class loci.plugins.in.ImportProcess

Gets a projection of required memory in bytes.

getMergeCells() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to merge cells

getMergedRegionAt(int) - Method in class loci.poi.hssf.model.Sheet
 
getMergedRegionAt(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

gets the region at a particular index

getMessage() - Method in enum loci.plugins.in.ImportStep
 
getMetadata() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the current IIOMetadata object.

getMetadata() - Method in class loci.formats.in.ND2Handler
 
getMetadataFile() - Method in class ome.xml.model.BinaryOnly
 
getMetadataLevel() - Method in class loci.formats.in.DefaultMetadataOptions
 
getMetadataLevel() - Method in interface loci.formats.in.MetadataOptions
 
getMetadataOnly() - Method in class ome.xml.model.Pixels
 
getMetadataOptions() - Method in class loci.formats.DelegateReader
 
getMetadataOptions() - Method in class loci.formats.FormatReader
 
getMetadataOptions() - Method in class loci.formats.ImageReader
 
getMetadataOptions() - Method in interface loci.formats.IMetadataConfigurable
 
getMetadataOptions() - Method in class loci.formats.ReaderWrapper
 
getMetadataRetrieve() - Method in class loci.formats.FormatWriter
 
getMetadataRetrieve() - Method in interface loci.formats.IFormatWriter

Retrieves the current metadata retrieval object for this writer.

getMetadataRetrieve() - Method in class loci.formats.ImageWriter
 
getMetadataRetrieve() - Method in class loci.formats.WriterWrapper
 
getMetadataStore() - Method in class loci.formats.FileStitcher
 
getMetadataStore() - Method in class loci.formats.FormatReader
 
getMetadataStore() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store for this reader.

getMetadataStore() - Method in class loci.formats.ImageReader
 
getMetadataStore() - Method in class loci.formats.Memoizer
 
getMetadataStore() - Method in class loci.formats.ReaderWrapper
 
getMetadataStoreForConversion() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to be
 usable by an IFormatWriter.

getMetadataStoreForDisplay() - Method in class loci.formats.in.OMETiffReader

Returns a MetadataStore that is populated in such a way as to
 produce valid OME-XML.

getMetadataStoreRoot() - Method in class loci.formats.FileStitcher
 
getMetadataStoreRoot() - Method in class loci.formats.FormatReader
 
getMetadataStoreRoot() - Method in interface loci.formats.IFormatReader

Retrieves the current metadata store's root object.

getMetadataStoreRoot() - Method in class loci.formats.ImageReader
 
getMetadataStoreRoot() - Method in class loci.formats.ReaderWrapper
 
getMetadataString(String) - Method in class loci.plugins.in.ImporterMetadata

Returns a string with each key/value pair on its own line.

getMetadataType() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the metadata type of the photometric interpretation.

getMetadataValue(String) - Method in class loci.formats.FormatReader
 
getMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current file.

getMetadataValue(String) - Method in class loci.formats.ImageReader
 
getMetadataValue(String) - Method in class loci.formats.ReaderWrapper
 
getMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getMethod() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns the method to define the color space.

getMethodForMQLengthCalc() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQLengthCalc

getMethodForMQTermination() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets methodForMQTermination

getMethodStack() - Method in class loci.plugins.util.BFVirtualStack
 
getMethodStack() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMicrobeamManipulation(int) - Method in class ome.xml.model.Experiment
 
getMicrobeamManipulation() - Method in class ome.xml.model.LightSourceSettings
 
getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationExperimenterRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsAttenuation(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsID(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationLightSourceSettingsWavelength(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationROIRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationROIRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationROIRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationROIRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicrobeamManipulationType(String) - Method in class loci.formats.FormatReader

Retrieves an MicrobeamManipulationType
 enumeration value for the given String.

getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getMicrobeamManipulationType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicrobeamManipulationType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicronsPerPixelX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along X for this Frame.

getMicronsPerPixelY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the microns per pixel along Y for this Frame.

getMicroscope() - Method in class ome.xml.model.Instrument
 
getMicroscopeLotNumber(int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicroscopeLotNumber(int) - Method in class ome.xml.meta.DummyMetadata
 
getMicroscopeLotNumber(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicroscopeLotNumber(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicroscopeManufacturer(int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicroscopeManufacturer(int) - Method in class ome.xml.meta.DummyMetadata
 
getMicroscopeManufacturer(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicroscopeManufacturer(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicroscopeModel(int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicroscopeModel(int) - Method in class ome.xml.meta.DummyMetadata
 
getMicroscopeModel(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicroscopeModel(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.DummyMetadata
 
getMicroscopeSerialNumber(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicroscopeSerialNumber(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMicroscopeType(String) - Method in class loci.formats.FormatReader

Retrieves an MicroscopeType enumeration
 value for the given String.

getMicroscopeType(int) - Method in class ome.xml.meta.AggregateMetadata
 
getMicroscopeType(int) - Method in class ome.xml.meta.DummyMetadata
 
getMicroscopeType(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getMicroscopeType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getMiddleName() - Method in class ome.xml.model.Experimenter
 
getMillisFromTicks(long, long) - Static method in class loci.common.DateTools

Converts from two-word tick representation to milliseconds.

getMIMEType() - Method in class ome.xml.model.BinaryFile
 
getMin() - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile-component

getMin() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMinimumAxisValue() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minimum axis value field for the ValueRange record.

getMinimumCategory() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minimum category field for the AxisOptions record.

getMinimumSize() - Method in class loci.formats.gui.CacheIndicator
 
getMinInComp(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each tile for specified component

getMinInTile(int) - Method in class jj2000.j2k.IntegerSpec

Get the minimum value of each component in specified tile

getMinMaxCalculator() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getMinMaxStore() - Method in class loci.formats.MinMaxCalculator

Retrieves the current active min-max store for the calculator.

getMinorIncrement() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the minor increment field for the ValueRange record.

getMinorTickType() - Method in class loci.poi.hssf.record.TickRecord

Get the minor tick type field for the Tick record.

getMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit field for the AxisOptions record.

getMinorUnitValue() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the minor unit value field for the AxisOptions record.

getMinorVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Returns the minor version of this file type box.

getMinThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
 
getMinTileX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the horizontal index of the leftmost column of tiles.

getMinTileX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMinTileY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the vertical index of the uppermost row of tiles.

getMinTileY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMinX() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the leftmost column of the image.

getMinX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minX

getMinX() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMinY() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the uppermost row of the image.

getMinY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets minY

getMinY() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getMMClipCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the mmclip count or 0 if the DocumentSummaryInformation does not contain a mmclip
 count.

getModalities() - Method in class loci.formats.in.ND2Handler
 
getModality(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getMode() - Method in class loci.poi.hssf.record.RefModeRecord

get the reference mode to use (HSSF uses/assumes A1)

getModel() - Method in class ome.xml.model.ManufacturerSpec
 
getModelObject(String) - Method in interface ome.xml.model.OMEModel
 
getModelObject(String) - Method in class ome.xml.model.OMEModelImpl
 
getModelObjects() - Method in interface ome.xml.model.OMEModel
 
getModelObjects() - Method in class ome.xml.model.OMEModelImpl
 
getModuloAlongC(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongC annotation in the given Image in the given
 OME-XML metadata object.

getModuloAlongC(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getModuloAlongT(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongT annotation in the given Image in the given
 OME-XML metadata object.

getModuloAlongT(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getModuloAlongZ(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService

Retrieve the ModuloAlongZ annotation in the given Image in the given
 OME-XML metadata object.

getModuloAlongZ(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getModuloC() - Method in class loci.formats.FormatReader
 
getModuloC() - Method in interface loci.formats.IFormatReader
 
getModuloC() - Method in class loci.formats.ImageReader
 
getModuloC() - Method in class loci.formats.ReaderWrapper
 
getModuloT() - Method in class loci.formats.FormatReader
 
getModuloT() - Method in interface loci.formats.IFormatReader
 
getModuloT() - Method in class loci.formats.ImageReader
 
getModuloT() - Method in class loci.formats.ReaderWrapper
 
getModuloZ() - Method in class loci.formats.FormatReader
 
getModuloZ() - Method in interface loci.formats.IFormatReader
 
getModuloZ() - Method in class loci.formats.ImageReader
 
getModuloZ() - Method in class loci.formats.ReaderWrapper
 
getMsgLogger() - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the current thread (the
 thread that calls this method).

getMsgLogger(Thread) - Static method in class jj2000.j2k.util.FacilityManager

Returns the MsgLogger registered with the thread 't' (the thread
 that calls this method).

getNA(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getName() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the name of the tag, as it will appear in image metadata.

getName(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the XML tag name defined in JP2 XML xsd/dtd for the box
  with the provided type.

getName() - Method in class loci.common.Location

Returns the name of this file, i.e.

getName() - Method in enum loci.formats.codec.JPEG2000BoxType

Returns the name of the box type.

getName() - Method in enum loci.formats.codec.JPEG2000SegmentMarker

Returns the name of the segment marker.

getName(int) - Method in class loci.formats.gui.TwoChannelColorSpace
 
getName() - Method in enum loci.formats.tiff.PhotoInterp

Retrieves the given name of the photometric interpretation.

getName() - Method in class loci.poi.ddf.EscherBSERecord

The length in characters of the blip name.

getName() - Method in class loci.poi.ddf.EscherProperty
 
getName() - Method in class loci.poi.hpsf.CustomProperty

Gets the property's name.

getName() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getName() - Method in class loci.poi.hssf.record.StyleRecord

get the style's name

getName() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent
 
getName() - Method in interface loci.poi.poifs.filesystem.Entry

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.EntryNode

get the name of the Entry

getName() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getName() - Method in class loci.poi.poifs.property.Property

Get the name of this property

getName() - Method in interface mdbtools.dbengine.Table
 
getName() - Method in class ome.metakit.Column

Retrieve the name of the column.

getName() - Method in class ome.xml.model.Channel
 
getName() - Method in class ome.xml.model.Dataset
 
getName() - Method in class ome.xml.model.ExperimenterGroup
 
getName() - Method in class ome.xml.model.Image
 
getName() - Method in class ome.xml.model.Plate
 
getName() - Method in class ome.xml.model.PlateAcquisition
 
getName() - Method in class ome.xml.model.Project
 
getName() - Method in class ome.xml.model.Reagent
 
getName() - Method in class ome.xml.model.ROI
 
getName() - Method in class ome.xml.model.Screen
 
getName() - Method in class ome.xml.model.StageLabel
 
getNameAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the Named range

getNameDefinition() - Method in class loci.poi.hssf.record.NameRecord

gets the definition, reference (Formula)

getNameIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range index by his name
 Note:Excel named ranges are case-insensitive and
 this method performs a case-insensitive search.

getNameLength() - Method in class loci.poi.hssf.record.StyleRecord

if this is a user defined record get the length of the style name

getNameName() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the name of the named range

getNameName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the named range name

getNamepos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the namepos.

getNameRecord(int) - Method in class loci.poi.hssf.model.Workbook

gets the name record

getNamespace() - Method in class ome.xml.model.Annotation
 
getNamespace() - Method in class ome.xml.model.ROI
 
getNameText() - Method in class loci.poi.hssf.record.NameRecord

gets the name

getNameTextLength() - Method in class loci.poi.hssf.record.NameRecord

gets the name length

getNamingConvention(String) - Method in class loci.formats.FormatReader

Retrieves an NamingConvention enumeration
 value for the given String.

getNANData() - Method in class loci.poi.hssf.record.RecordInputStream
 
getNativeDataType() - Method in class loci.formats.ChannelFiller
 
getNativeDataType() - Method in class loci.formats.ChannelMerger
 
getNativeDataType() - Method in class loci.formats.ChannelSeparator
 
getNativeDataType() - Method in class loci.formats.FormatHandler
 
getNativeDataType() - Method in interface loci.formats.IFormatHandler

Returns the native data type of image planes for this reader, as returned
 by IFormatReader.openPlane(int, int, int, int, int) or IFormatWriter.savePlane(int, java.lang.Object).

getNativeDataType() - Method in class loci.formats.ImageReader
 
getNativeDataType() - Method in class loci.formats.ImageWriter
 
getNativeDataType() - Method in class loci.formats.in.BIFormatReader
 
getNativeDataType() - Method in class loci.formats.in.TextReader
 
getNativeDataType() - Method in class loci.formats.MinMaxCalculator
 
getNativeDataType() - Method in class loci.formats.out.ImageIOWriter
 
getNativeDataType() - Method in class loci.formats.out.LegacyQTWriter
 
getNativeDataType() - Method in class loci.formats.ReaderWrapper
 
getNativeDataType() - Method in class loci.formats.TileStitcher
 
getNativeDataType() - Method in class loci.formats.WriterWrapper
 
getNativeDataType() - Method in class loci.plugins.util.ImageProcessorReader
 
getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Creates an IIOMetadataNode from this channel definition
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Creates an IIOMetadataNode from this color specification
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox

Creates an IIOMetadataNode from this component mapping
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Creates an IIOMetadataNode from this data entry URL
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox

Creates an IIOMetadataNode from this file type box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Creates an IIOMetadataNode from this image header box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

creates an IIOMetadataNode from this palette box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Creates an IIOMetadataNode from this resolution
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox

Creates an IIOMetadataNode from this signature
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Creates an IIOMetadataNode from this UUID
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox

Creates an IIOMetadataNode from this UUID list
  box.

getNativeNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox

Creates an IIOMetadataNode from this XML
  box.

getNativeNodeForSimpleBox() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Creates an IIOMetadataNode from this
  box.

getNChannels() - Method in class loci.plugins.util.RecordedImageProcessor
 
getNDFilter() - Method in class ome.xml.model.Channel
 
getNewCOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COC

getNewCOD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COD

getNewCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of COM

getNewCRG() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of CRG

getNewPOC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of POC

getNewQCC() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCC

getNewQCD() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of QCD

getNewRGN() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of RGN

getNewSIZ() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SIZ

getNewSOT() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns a new instance of SOT

getNextChild() - Method in interface loci.poi.poifs.property.Child

Get the next Child, if any

getNextChild() - Method in class loci.poi.poifs.property.Property

Get the next Child, if any

getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
 
getNextCode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
 
getNextCodeBlock(int, CBlkRateDistStats) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the next coded code-block in the current tile for the specified
 component, as a copy (see below).

getNextCodeBlock(int, CBlkRateDistStats) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the next coded code-block in the current tile for the specified
 component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified
 component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified
 component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified
 component, as a copy (see below).

getNextCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified
 component, as a copy (see below).

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.quantization.quantizer.CBlkQuantDataSrcEnc

Returns the next code-block in the current tile for the specified
 component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the next code-block in the current tile for the specified
 component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function gets a datablk from the entropy coder.

getNextInternCodeBlock(int, CBlkWTData) - Method in interface jj2000.j2k.wavelet.analysis.CBlkWTDataSrc

Returns the next code-block in the current tile for the specified
 component.

getNextInternCodeBlock(int, CBlkWTData) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the next code-block in the current tile for the specified
 component.

getNextResLevel() - Method in class jj2000.j2k.wavelet.Subband

Returns the first leaf subband element in the next higher resolution
 level.

getNextRow() - Method in class loci.poi.hssf.model.Sheet

get the NEXT RowRecord (from LOC).

getNextSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getNextValueRecord() - Method in class loci.poi.hssf.model.Sheet

get the NEXT value record (from LOC).

getNoColor() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getNoColor() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the black and white setting.

getNominalMagnification() - Method in class ome.xml.model.Objective
 
getNomRangeBits(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of bits corresponding to the nominal range of the
 data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the data in the specified
 component and in the current tile.

getNomRangeBits(int) - Method in interface jj2000.j2k.image.ImgData

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the image data in the specified
 component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the image data in the specified
 component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the data in the specified
 component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns the number of bits corresponding to the nominal range of the
 data in the specified component.

getNomRangeBits(int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the data in the specified
 component.

getNomRangeBits(int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the data in the specified
 component.

getNomRangeBits(int) - Method in interface jj2000.j2k.wavelet.synthesis.CBlkWTDataSrcDec

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the data in the specified
 component.

getNomRangeBits(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the number of bits, referred to as the "range bits",
 corresponding to the nominal range of the data in the specified
 component.

getNomTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile height

getNomTileHeight() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal height of tiles

getNomTileHeight() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles height

getNomTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles height

getNomTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the nominal tile width

getNomTileWidth() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.image.Tiler

Returns the nominal width of the tiles in the reference grid.

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the nominal width of tiles

getNomTileWidth() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the nominal tiles width

getNomTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the nominal tiles width

getNonThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns non-thumbnail IFDs.

getNoOrientation() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getNoOrientation() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the no orientation.

getNOptPoints() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the number of layers to optimize, or optimization points, as
 specified by this object.

getNormalZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the zoom magnification in normal view

getNoROIDescaling() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets noROIDescaling

getNoteCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the note count or 0 if the DocumentSummaryInformation does not contain a note count.

getNoteRecord() - Method in class loci.poi.hssf.model.CommentShape

Return the NoteRecord holding the comment attributes

getNotes() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getNotes() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the print notes.

getNoWlzMsg() - Method in interface loci.formats.services.WlzService

Gets the text string for when Woolz has not been found.

getNoWlzMsg() - Method in class loci.formats.services.WlzServiceImpl
 
getNumAreas() - Method in class loci.poi.hssf.record.MergeCellsRecord

get the number of merged areas.

getNumAxis() - Method in class loci.poi.hssf.record.AxisUsedRecord

Get the num axis field for the AxisUsed record.

getNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the integer used to represent the tag.

getNumber(String) - Method in class loci.formats.NumberFilter

Gets numbers filling the asterisk positions.

getNumberOfBuiltinBuiltinFormats() - Static method in class loci.poi.hssf.usermodel.HSSFDataFormat

get the number of builtin and reserved builtinFormats

getNumberOfElementsInArray() - Method in class loci.poi.ddf.EscherArrayProperty
 
getNumberOfElementsInMemory() - Method in class loci.poi.ddf.EscherArrayProperty
 
getNumberOfExpressionTokens() - Method in class loci.poi.hssf.record.FormulaRecord

get the size of the stack

getNumberOfFontRecords() - Method in class loci.poi.hssf.model.Workbook

gets the number of font records

getNumberOfFonts() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of fonts in the font table

getNumberOfInfoRecsForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord
 
getNumberOfNames() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the total number of named ranges in the workboko

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ConcatPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.DividePtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.EqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the number of operands for the Less than operator

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.OperationPtg

The number of operands expected by the operations

getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.PowerPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.RangePtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.SubtractPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getNumberOfOperands() - Method in class loci.poi.hssf.record.formula.UnionPtg
 
getNumberOfSheets() - Method in class loci.poi.hssf.record.SupBookRecord
 
getNumberOfSheets() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of spreadsheets in the workbook (this will be three after serialization)

getNumBreaks() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getNumBubbleValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num bubble values field for the Series record.

getNumCategories() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num categories field for the Series record.

getNumCellOffsets() - Method in class loci.poi.hssf.record.DBCellRecord

get the number of cell offsets in the celloffset array

getNumCellStyles() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the number of styles the workbook contains

getNumCodedBytes() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of bytes that are necessary from the compressed
 output stream to decode all the symbols that have been coded this
 far.

getNumColumnBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of column page breaks

getNumColumns() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getNumColumns() - Method in class loci.poi.hssf.record.MulBlankRecord

get the number of columns this contains (last-first +1)

getNumColumns() - Method in class loci.poi.hssf.record.MulRKRecord

get the number of columns this contains (last-first +1)

getNumCOM() - Method in class jj2000.j2k.codestream.HeaderInfo

Returns the number of found COM marker segments

getNumComp() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of color components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the number of image components.

getNumComponents() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of components

getNumComponents() - Method in class loci.formats.gui.TwoChannelColorSpace
 
getNumComps() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.image.ImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of components in the image.

getNumComps() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of components in the image.

getNumComps() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of components in the image.

getNumCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Returns the number of contexts in the arithmetic coder.

getNumCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder

Returns the number of contexts in the arithmetic coder.

getNumDbcells() - Method in class loci.poi.hssf.record.IndexRecord
 
getNumDecompositionLevels() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets numDecompositionLevels.

getNumEntries() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox

Return the number of palette entries.

getNumerator() - Method in class loci.formats.tiff.TiffRational

Gets this number's numerator.

getNumerator() - Method in class loci.poi.hssf.record.SCLRecord

Get the numerator field for the SCL record.

getNumericalAperture() - Method in class loci.formats.in.ND2Handler
 
getNumericCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a number.

getNumericFields(GenericDialog) - Static method in class loci.plugins.util.WindowTools
 
getNumExFormats() - Method in class loci.poi.hssf.model.Workbook

get the number of ExtendedFormat records contained in this workbook.

getNumFoundMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the number of found marker segments in the current header.

getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC
 
getNumGuardBits() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD
 
getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the number of guard bits used by this quantizer in the
 given tile-component.

getNumGuardBits(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the number of guard bits used by this quantizer in the given
 tile-component.

getNumIdClusters() - Method in class loci.poi.ddf.EscherDggRecord

Number of id clusters + 1

getNumImages() - Method in class com.sun.media.imageio.stream.RawImageInputStream

Retrieves the number of images in the ImageInputStream.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader

Overrides the method defined in the superclass.

getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getNumImages(boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader

Overrides the method defined in the superclass.

getNumInfoRecords() - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getNumLayers() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the number of layers that are actually generated.

getNumMergedRegions() - Method in class loci.poi.hssf.model.Sheet
 
getNumMergedRegions() - Method in class loci.poi.hssf.usermodel.HSSFSheet

returns the number of merged regions

getNumNames() - Method in class loci.poi.hssf.model.Workbook

gets the total number of names

getNumOfREFRecords() - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the number of REF Records, which is in model

getNumOfREFStructures() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the number of the REF structors , that is in Excel file

getNumPrecinct(int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Gets the number of precincts in a given component and resolution level.

getNumRecords() - Method in class loci.poi.hssf.model.Sheet

Returns the number of low level binary records in this sheet.

getNumRecords() - Method in class loci.poi.hssf.model.Workbook
 
getNumRefs() - Method in class loci.poi.hssf.record.SelectionRecord

get the number of cell refs (we don't support selection so set to 0

getNumRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns the number of row page breaks

getNumSelectedTabs() - Method in class loci.poi.hssf.record.WindowOneRecord

get the number of selected tabs

getNumSeries() - Method in class loci.formats.in.LegacyND2Reader
 
getNumShapeIdsUsed() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
getNumShapes() - Method in class loci.poi.ddf.EscherDgRecord

The number of shapes in this drawing group.

getNumShapesSaved() - Method in class loci.poi.ddf.EscherDggRecord
 
getNumSheets() - Method in class loci.poi.hssf.model.Workbook

returns the number of boundsheet objects contained in this workbook.

getNumStrings() - Method in class loci.poi.hssf.record.SSTRecord
 
getNumStringsPerBucket() - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getNumThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getNumTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the number of TIFFFields in this directory.

getNumTileParts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Returns the number of tile-part found for a given tile

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets the number of tiles

getNumTiles(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the number of tiles in the horizontal and vertical
 directions.

getNumTiles() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getNumTiles(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the total number of tiles in the image.

getNumTiles() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the number of tiles in the image

getNumTiles(Point) - Method in interface jj2000.j2k.image.ImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.image.ImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the number of tiles in the horizontal and vertical
 directions.

getNumTiles() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.input.ImgReader

Returns the number of tiles in the horizontal and vertical
 directions.

getNumTiles() - Method in class jj2000.j2k.image.input.ImgReader

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.image.Tiler

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.image.Tiler

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the total number of tiles in the image.

getNumTiles(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the number of tiles in the horizontal and vertical directions.

getNumTiles() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the total number of tiles in the image.

getNumUniqueStrings() - Method in class loci.poi.hssf.record.SSTRecord
 
getNumValues() - Method in class loci.poi.hssf.record.SeriesRecord

Get the num values field for the Series record.

getNumXTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the
 horizontal direction.

getNumXTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getNumYTiles() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the number of tiles along the tile grid in the vertical
 direction.

getNumYTiles() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getObject(int) - Method in class loci.formats.cache.ByteArraySource
 
getObject(int[]) - Method in class loci.formats.cache.Cache

Gets the cached object at the given dimensional position.

getObject(int) - Method in class loci.formats.cache.CacheSource
 
getObject(int) - Method in interface loci.formats.cache.ICacheSource

Get the object corresponding to the given index.

getObject(int) - Method in class loci.formats.gui.BufferedImageSource
 
getObject(int) - Method in class loci.plugins.util.ImageProcessorSource
 
getObjectArrayMaxLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectArrayMinLength(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectClass(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectCount() - Method in class loci.formats.cache.CacheSource
 
getObjectCount() - Method in interface loci.formats.cache.ICacheSource

Get the total number of objects that this source can retrieve.

getObjectCount() - Method in class loci.formats.gui.BufferedImageSource
 
getObjectCount() - Method in class loci.plugins.util.ImageProcessorSource
 
getObjectDefaultValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectEnumerations(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectId() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object id field for the CommonObjectData record.

getObjective(int) - Method in class ome.xml.model.Instrument
 
getObjective() - Method in class ome.xml.model.ObjectiveSettings
 
getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveCalibratedMagnification(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveCalibratedMagnification(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveCorrection(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveCorrection(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveCorrection(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveCorrection(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveImmersion(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveImmersion(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveImmersion(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveImmersion(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveIris(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveIris(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveIris(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveIris(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveLens() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the objective lens string for this Frame.

getObjectiveLensNA() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the numerical aperture of the lens for this Frame.

getObjectiveLensNA(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveLensNA(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveLensNA(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveLensNA(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveLotNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveLotNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveManufacturer() - Method in class loci.formats.in.PrairieMetadata.Frame

Extracts the objective manufacturer from the objective lens string.

getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveManufacturer(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveManufacturer(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveModel() - Method in class loci.formats.in.ND2Handler
 
getObjectiveModel(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveModel(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveModel(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveModel(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveName(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveNominalMagnification(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveNominalMagnification(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveSerialNumber(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveSerialNumber(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveSettings() - Method in class ome.xml.model.Image
 
getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveSettingsCorrectionCollar(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveSettingsCorrectionCollar(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveSettingsID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveSettingsID(int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveSettingsID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveSettingsID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveSettingsMedium(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveSettingsMedium(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveSettingsRefractiveIndex(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveSettingsRefractiveIndex(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getObjectiveWorkingDistance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getObjectiveWorkingDistance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getObjectMaxValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectMinValue(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjectProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether object protection is enabled or disabled

getObjectType() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the object type field for the CommonObjectData record.

getObjectValueType(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getObjRecord() - Method in class loci.poi.hssf.model.AbstractShape
 
getObjRecord() - Method in class loci.poi.hssf.model.LineShape
 
getObjRecord() - Method in class loci.poi.hssf.model.PictureShape
 
getObjRecord() - Method in class loci.poi.hssf.model.PolygonShape
 
getObjRecord() - Method in class loci.poi.hssf.model.SimpleFilledShape
 
getObjRecord() - Method in class loci.poi.hssf.model.TextboxShape
 
getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffLastROIPkt() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter

Gives the offset of the end of last packet containing ROI information

getOffset(int) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the cth offset for this Frame.

getOffset() - Method in class loci.poi.ddf.EscherBSERecord

File offset in the delay stream.

getOffset() - Method in class loci.poi.hpsf.Section

Returns the offset of the section in the stream.

getOffset() - Method in class loci.poi.poifs.storage.RawDataBlock
 
getOffset() - Method in class ome.xml.model.Detector
 
getOffset() - Method in class ome.xml.model.DetectorSettings
 
getOMEMetadata(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Returns a OMEXMLMetadata object with the same
 contents as the given MetadataRetrieve, converting it if necessary.

getOMEMetadata(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOMEMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getOMEXML(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService

Extracts an OME-XML metadata string from the given metadata object,
 by converting to an OME-XML metadata object if necessary.

getOMEXML(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOMEXML() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.READER.

getOmeXmlMetadata() - Method in class loci.formats.in.FakeReader
 
getOmeXmlService() - Method in class loci.formats.in.FakeReader
 
getOMEXMLVersion(Object) - Method in interface loci.formats.services.OMEXMLService

Gets the schema version for the given OME-XML metadata or root object
 (e.g., "2007-06" or "2003-FC").

getOMEXMLVersion(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOnDemandStripOffsets() - Method in class loci.formats.tiff.IFD
 
getOpenAllSeriesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getOperator() - Method in class mdbtools.dbengine.sql.Condition
 
getOperator() - Method in class mdbtools.dbengine.sql.Equation
 
getOpticalZoom() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the optical zoom associatetd with this Frame.

getOptimalTileHeight() - Method in class loci.formats.DelegateReader
 
getOptimalTileHeight() - Method in class loci.formats.FormatReader
 
getOptimalTileHeight() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image height for use with openBytes.

getOptimalTileHeight() - Method in class loci.formats.ImageReader
 
getOptimalTileHeight() - Method in class loci.formats.in.AFIReader
 
getOptimalTileHeight() - Method in class loci.formats.in.AmiraReader
 
getOptimalTileHeight() - Method in class loci.formats.in.APLReader
 
getOptimalTileHeight() - Method in class loci.formats.in.BaseZeissReader
 
getOptimalTileHeight() - Method in class loci.formats.in.BDReader
 
getOptimalTileHeight() - Method in class loci.formats.in.BioRadReader
 
getOptimalTileHeight() - Method in class loci.formats.in.CellSensReader
 
getOptimalTileHeight() - Method in class loci.formats.in.EPSReader
 
getOptimalTileHeight() - Method in class loci.formats.in.FlexReader
 
getOptimalTileHeight() - Method in class loci.formats.in.FV1000Reader
 
getOptimalTileHeight() - Method in class loci.formats.in.HamamatsuVMSReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ImageIOReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ImarisHDFReader
 
getOptimalTileHeight() - Method in class loci.formats.in.InCellReader
 
getOptimalTileHeight() - Method in class loci.formats.in.IPWReader
 
getOptimalTileHeight() - Method in class loci.formats.in.L2DReader
 
getOptimalTileHeight() - Method in class loci.formats.in.LeicaReader
 
getOptimalTileHeight() - Method in class loci.formats.in.LeicaSCNReader
 
getOptimalTileHeight() - Method in class loci.formats.in.LIFReader
 
getOptimalTileHeight() - Method in class loci.formats.in.MIASReader
 
getOptimalTileHeight() - Method in class loci.formats.in.MicromanagerReader
 
getOptimalTileHeight() - Method in class loci.formats.in.MinimalTiffReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ND2Reader
 
getOptimalTileHeight() - Method in class loci.formats.in.NDPIReader
 
getOptimalTileHeight() - Method in class loci.formats.in.NDPISReader
 
getOptimalTileHeight() - Method in class loci.formats.in.NRRDReader
 
getOptimalTileHeight() - Method in class loci.formats.in.OMETiffReader
 
getOptimalTileHeight() - Method in class loci.formats.in.OpenlabReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PCIReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PerkinElmerReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PrairieReader
 
getOptimalTileHeight() - Method in class loci.formats.in.PyramidTiffReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ScanrReader
 
getOptimalTileHeight() - Method in class loci.formats.in.SVSReader
 
getOptimalTileHeight() - Method in class loci.formats.in.TrestleReader
 
getOptimalTileHeight() - Method in class loci.formats.in.VisitechReader
 
getOptimalTileHeight() - Method in class loci.formats.in.ZeissLSMReader
 
getOptimalTileHeight() - Method in class loci.formats.ReaderWrapper
 
getOptimalTileWidth() - Method in class loci.formats.DelegateReader
 
getOptimalTileWidth() - Method in class loci.formats.FormatReader
 
getOptimalTileWidth() - Method in interface loci.formats.IFormatReader

Returns the optimal sub-image width for use with openBytes.

getOptimalTileWidth() - Method in class loci.formats.ImageReader
 
getOptimalTileWidth() - Method in class loci.formats.in.AFIReader
 
getOptimalTileWidth() - Method in class loci.formats.in.APLReader
 
getOptimalTileWidth() - Method in class loci.formats.in.BDReader
 
getOptimalTileWidth() - Method in class loci.formats.in.CellSensReader
 
getOptimalTileWidth() - Method in class loci.formats.in.EPSReader
 
getOptimalTileWidth() - Method in class loci.formats.in.FlexReader
 
getOptimalTileWidth() - Method in class loci.formats.in.FV1000Reader
 
getOptimalTileWidth() - Method in class loci.formats.in.HamamatsuVMSReader
 
getOptimalTileWidth() - Method in class loci.formats.in.ImarisHDFReader
 
getOptimalTileWidth() - Method in class loci.formats.in.InCellReader
 
getOptimalTileWidth() - Method in class loci.formats.in.IPWReader
 
getOptimalTileWidth() - Method in class loci.formats.in.L2DReader
 
getOptimalTileWidth() - Method in class loci.formats.in.LeicaReader
 
getOptimalTileWidth() - Method in class loci.formats.in.LeicaSCNReader
 
getOptimalTileWidth() - Method in class loci.formats.in.MIASReader
 
getOptimalTileWidth() - Method in class loci.formats.in.MicromanagerReader
 
getOptimalTileWidth() - Method in class loci.formats.in.MinimalTiffReader
 
getOptimalTileWidth() - Method in class loci.formats.in.NDPIReader
 
getOptimalTileWidth() - Method in class loci.formats.in.NDPISReader
 
getOptimalTileWidth() - Method in class loci.formats.in.OMETiffReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PCIReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PerkinElmerReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PrairieReader
 
getOptimalTileWidth() - Method in class loci.formats.in.PyramidTiffReader
 
getOptimalTileWidth() - Method in class loci.formats.in.ScanrReader
 
getOptimalTileWidth() - Method in class loci.formats.in.SVSReader
 
getOptimalTileWidth() - Method in class loci.formats.in.TrestleReader
 
getOptimalTileWidth() - Method in class loci.formats.ReaderWrapper
 
getOptimalWidth() - Method in class loci.formats.in.ZeissLSMReader
 
getOptimize() - Method in class loci.poi.hssf.record.RowRecord

get whether to optimize or not (set to 0)

getOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the option with the given key.

getOption() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the option field for the CommonObjectData record.

getOptionFlag() - Method in class loci.poi.hssf.record.NameRecord

gets the option flag

getOptionFlags() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the option flags (unimportant for HSSF supported sheets)

getOptionFlags() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the (currently unimportant to HSSF) option flags

getOptionFlags() - Method in class loci.poi.hssf.record.RowRecord

gets the option bitmask.

getOptionFlags() - Method in class loci.poi.hssf.record.UnicodeString

get the option flags which among other things return if this is a 16-bit or
 8 bit string

getOptions() - Method in class loci.plugins.in.ImportProcess
 
getOptions() - Method in class loci.poi.ddf.EscherOptRecord

Automatically recalculate the correct option

getOptions() - Method in class loci.poi.ddf.EscherRecord
 
getOptions() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Get the options field for the AxisOptions record.

getOptions() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the options field for the CategorySeriesAxis record.

getOptions() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the options bitfield - use the bitsetters instead

getOptions() - Method in class loci.poi.hssf.record.DatRecord

Get the options field for the Dat record.

getOptions() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getOptions() - Method in class loci.poi.hssf.record.FormulaRecord

get the option flags

getOptions() - Method in class loci.poi.hssf.record.FrameRecord

Get the options field for the Frame record.

getOptions() - Method in class loci.poi.hssf.record.LegendRecord

Get the options field for the Legend record.

getOptions() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the options field for the LinkedData record.

getOptions() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getOptions() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the options field for the TextObjectBase record.

getOptions() - Method in class loci.poi.hssf.record.TickRecord

Get the options field for the Tick record.

getOptions() - Method in class loci.poi.hssf.record.ValueRangeRecord

Get the options field for the ValueRange record.

getOptions() - Method in class loci.poi.hssf.record.WindowOneRecord

get the options bitmask (see bit setters)

getOptions() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the options bitmask or just use the bit setters.

getOptions() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the bit flags for the options.

getOptions1() - Method in class loci.poi.hssf.record.TextRecord

Get the options1 field for the Text record.

getOptions2() - Method in class loci.poi.hssf.record.TextRecord

Get the options2 field for the Text record.

getOrder() - Method in class loci.common.ByteArrayHandle
 
getOrder() - Method in class loci.common.FileHandle
 
getOrder() - Method in interface loci.common.IRandomAccess

Returns the current order of the stream.

getOrder() - Method in class loci.common.NIOFileHandle
 
getOrder() - Method in class loci.common.StreamHandle
 
getOrder() - Method in class loci.formats.cache.CacheStrategy
 
getOrder() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the order in which objects should be loaded along each axis.

getOrderBy(int) - Method in class mdbtools.dbengine.sql.Select
 
getOrderByCount() - Method in class mdbtools.dbengine.sql.Select
 
getOrgX() - Method in interface loci.formats.services.WlzService

Gets column origin.

getOrgX() - Method in class loci.formats.services.WlzServiceImpl
 
getOrgY() - Method in interface loci.formats.services.WlzService

Gets line origin.

getOrgY() - Method in class loci.formats.services.WlzServiceImpl
 
getOrgZ() - Method in interface loci.formats.services.WlzService

Gets plane origin.

getOrgZ() - Method in class loci.formats.services.WlzServiceImpl
 
getOrigBitDepth(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
getOriginalBitDepth(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the original bitdepth of the specified component.

getOriginalIndex(int) - Method in class loci.formats.ChannelMerger

Returns the image number in the original dataset that corresponds to the
 given image number.

getOriginalIndex(int) - Method in class loci.formats.ChannelSeparator

Returns the image number in the original dataset that corresponds to the
 given image number.

getOriginalMetadata(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Parse any OriginalMetadata annotations from the given OME-XML metadata
 object and store them in a Hashtable.

getOriginalMetadata(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
 
getOriginalMetadata() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.METADATA.

getOriginalOrder() - Method in class loci.formats.AxisGuesser

Gets the original dimension order.

getOSVersion() - Method in class loci.poi.hpsf.PropertySet

Returns the property set stream's low-level "OS version"
 field.

getOSVersion() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getOutlineLevel() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the outline level for the cells

getOutlineLevel() - Method in class loci.poi.hssf.record.RowRecord

get the outline level of this row

getOutlineStyleLevel() - Method in class loci.poi.hssf.record.StyleRecord

get the row or column level of the style (if builtin 1||2)

getPackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

For the case of binary data (isBinary() returns
 true), return the binary data as a packed byte array.

getPackedPktHead(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Return the packed packet headers for a given tile.

getPacketPerTilePart() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packetPerTilePart

getPackPacketHeaderInMain() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInMain

getPackPacketHeaderInTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets packPacketHeaderInTile

getPageBreakZoom() - Method in class loci.poi.hssf.record.WindowTwoRecord

zoom magification in page break view

getPageCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the page count or 0 if the SummaryInformation does
 not contain a page count.

getPaged() - Method in class loci.poi.hssf.record.WindowTwoRecord

is the sheet currently displayed in the window

getPageStart() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getPageStart() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the page start.

getPaint() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getPaint() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getPaletteOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette options bitmask (see the individual bit getter methods that
 reference this one)

getPalettepos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getPane() - Method in class loci.poi.hssf.record.SelectionRecord

get which window pane this is for

getPaneInformation() - Method in class loci.poi.hssf.model.Sheet

Returns the information regarding the currently configured pane (split or freeze).

getPaneInformation() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the information regarding the currently configured pane (split or freeze).

getPaperSize() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getPaperSize() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the paper size.

getParameterClass(int) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the parameters that are used in this class and implementing
 classes.

getParameterInfo() - Static method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the parameters that are used in this class.

getParameterInfo() - Static method in class jj2000.j2k.codestream.writer.PktEncoder

Returns the parameters that are used in this class and implementing
 classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the parameters that are used in this class and
 implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the parameters that are used in this class and
 implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Returns the parameters that are used in this class and implementing
 classes.

getParameterInfo() - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns the parameters that are used in this class and implementing
 classes.

getParameterInfo() - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns the parameters that are used in this class and implementing
 classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the parameters that are used in this class and
 implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns the parameters that are used in this class and implementing
 classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.encoder.ROIScaler

Returns the parameters that are used in this class and
 implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.roi.ROIDeScaler

Returns the parameters that are used in this class and implementing
 classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter

Returns the parameters that are used in this class and
 implementing classes.

getParameterInfo() - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT

Returns the parameters that are used in this class and implementing
 classes.

getParCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the par count or 0 if the DocumentSummaryInformation does not contain a par count.

getParent(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
 
getParent(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
 
getParent() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.Subband

Returns the parent of this subband.

getParent() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

Returns the parent of this subband.

getParent() - Method in class loci.common.Location

Returns the name of this file's parent directory, i.e.

getParent() - Method in class loci.poi.hssf.usermodel.HSSFShape

Gets the parent shape.

getParent() - Method in interface loci.poi.poifs.filesystem.Entry

get this Entry's parent (the DirectoryEntry that owns this
 Entry).

getParent() - Method in class loci.poi.poifs.filesystem.EntryNode

get this Entry's parent (the DocumentEntry that owns this
 Entry).

getParent() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

Returns the path's parent or null if this path
 is the root path.

getParentFile() - Method in class loci.common.Location
 
getParentIndex() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

for cell XF types this is the parent style (usually 0/normal).

getParentTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the parent TIFFTag of this directory if one
 has been defined or null otherwise.

getParsedExpression() - Method in class loci.poi.hssf.record.FormulaRecord

get the stack as a list

getParsingEnabled() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Gets parsingEnabled

getPassword() - Method in class loci.poi.hssf.model.Sheet

Returns the PasswordRecord.

getPassword() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getPassword() - Method in class loci.poi.hssf.record.PasswordRecord

get the password

getPassword() - Method in class loci.poi.hssf.record.PasswordRev4Record

get the password

getPassword() - Method in class loci.poi.hssf.usermodel.HSSFSheet
 
getPath() - Method in class loci.common.Location
 
getPath() - Method in class loci.plugins.util.BFVirtualStack
 
getPath() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent
 
getPath() - Method in class loci.poi.poifs.filesystem.DirectoryNode
 
getPath() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getPatriarch() - Method in class loci.poi.hssf.record.EscherAggregate
 
getPattern() - Method in class loci.formats.FilePattern

Gets the file pattern string.

getPattern() - Method in class loci.poi.hssf.record.AreaFormatRecord

Get the pattern field for the AreaFormat record.

getPhotometricInterpretation() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the current value that will be written to the
 Photometricinterpretation tag.

getPhotometricInterpretation() - Method in class loci.formats.tiff.IFD

Retrieves the image's photometric interpretation (TIFF tag
 PhotometricInterpretation) from this IFD.

getPhysicalNumberOfCells() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getPhysicalNumberOfCells() - Method in class loci.poi.hssf.usermodel.HSSFRow

gets the number of defined cells (NOT number of cells in the actual row!).

getPhysicalNumberOfRows() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getPhysicalNumberOfRows() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the number of phsyically defined rows (NOT the number of rows in the sheet)

getPhysicalSizeX(Double) - Static method in class loci.formats.FormatTools
 
getPhysicalSizeX() - Method in class loci.tests.testng.Configuration
 
getPhysicalSizeX() - Method in class ome.xml.model.Pixels
 
getPhysicalSizeY(Double) - Static method in class loci.formats.FormatTools
 
getPhysicalSizeY() - Method in class loci.tests.testng.Configuration
 
getPhysicalSizeY() - Method in class ome.xml.model.Pixels
 
getPhysicalSizeZ(Double) - Static method in class loci.formats.FormatTools
 
getPhysicalSizeZ() - Method in class loci.tests.testng.Configuration
 
getPhysicalSizeZ() - Method in class ome.xml.model.Pixels
 
getPictDimensions(byte[]) - Method in class loci.formats.gui.LegacyQTTools

Gets width and height for the given PICT bytes.

getPicturedata() - Method in class loci.poi.ddf.EscherBlipRecord
 
getPictureIndex() - Method in class loci.poi.hssf.usermodel.HSSFPicture
 
getPIDString(long) - Method in class loci.poi.hpsf.Section

Returns the PID string associated with a property ID.

getPIDString(byte[], long) - Static method in class loci.poi.hpsf.wellknown.SectionIDMap

Returns the property ID string that is associated with a
 given property ID in a section format ID's namespace.

getPinholeSize() - Method in class loci.formats.in.ND2Handler
 
getPinholeSize() - Method in class ome.xml.model.Channel
 
getPixel(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixel(int, int, int[]) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixelBytes(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelBytes(WritableRaster, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Return a 2D array of bytes representing the image.

getPixelCount() - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixelInterpolated(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(BufferedImage, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the image's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets the raster's pixel data as arrays of primitives, one per channel.

getPixels() - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixels() - Method in class ome.xml.model.BinData
 
getPixels() - Method in class ome.xml.model.Channel
 
getPixels() - Method in class ome.xml.model.Image
 
getPixels() - Method in class ome.xml.model.Plane
 
getPixels() - Method in class ome.xml.model.TiffData
 
getPixelsAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsBigEndian(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsBigEndian(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsBigEndian(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsBigEndian(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsBinDataBigEndian(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsBinDataBigEndian(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsBinDataCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsBinDataCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsBinDataCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsBinDataCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsCopy() - Method in class loci.plugins.util.RecordedImageProcessor
 
getPixelsDimensionOrder(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsDimensionOrder(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsDimensionOrder(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsDimensionOrder(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsID(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsInterleaved(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsInterleaved(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsInterleaved(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsInterleaved(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelSizeX() - Method in class loci.formats.in.MetamorphHandler
 
getPixelSizeX() - Method in class loci.formats.in.ND2Handler
 
getPixelSizeY() - Method in class loci.formats.in.MetamorphHandler
 
getPixelSizeY() - Method in class loci.formats.in.ND2Handler
 
getPixelSizeZ() - Method in class loci.formats.in.ND2Handler
 
getPixelsPerLine() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the pixels per line for this Frame.

getPixelsPhysicalSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsPhysicalSizeX(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsPhysicalSizeX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsPhysicalSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsPhysicalSizeY(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsPhysicalSizeY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsPhysicalSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsPhysicalSizeZ(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsPhysicalSizeZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsSignificantBits(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsSignificantBits(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsSignificantBits(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsSignificantBits(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsSizeC(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsSizeC(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsSizeC(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsSizeC(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsSizeT(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsSizeT(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsSizeT(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsSizeT(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsSizeX(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsSizeX(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsSizeX(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsSizeX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsSizeY(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsSizeY(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsSizeY(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsSizeY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsSizeZ(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsSizeZ(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsSizeZ(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsSizeZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsTimeIncrement(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelsTimeIncrement(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsTimeIncrement(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsTimeIncrement(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsTimeIncrement(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelsType(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPixelsType(int) - Method in class ome.xml.meta.DummyMetadata
 
getPixelsType(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPixelsType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPixelType() - Method in class loci.formats.FileStitcher
 
getPixelType() - Method in class loci.formats.FormatReader
 
getPixelType(String) - Method in class loci.formats.FormatReader

Retrieves an PixelType enumeration
 value for the given String.

getPixelType(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Gets the pixel type of the given image.

getPixelType() - Method in interface loci.formats.IFormatReader

Gets the pixel type.

getPixelType() - Method in class loci.formats.ImageReader
 
getPixelType() - Method in class loci.formats.ReaderWrapper
 
getPixelType() - Method in interface loci.formats.services.WlzService

Gets the image pixel type.

getPixelType() - Method in class loci.formats.services.WlzServiceImpl
 
getPixelType() - Method in class loci.formats.tiff.IFD

Retrieves the image's pixel type based on the BitsPerSample tag.

getPixelType(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getPixelType() - Method in class loci.tests.testng.Configuration
 
getPixelTypes() - Method in class loci.formats.FormatWriter
 
getPixelTypes(String) - Method in class loci.formats.FormatWriter
 
getPixelTypes() - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types.

getPixelTypes(String) - Method in interface loci.formats.IFormatWriter

Gets the supported pixel types for the given codec.

getPixelTypes() - Method in class loci.formats.ImageWriter
 
getPixelTypes(String) - Method in class loci.formats.ImageWriter
 
getPixelTypes(String) - Method in class loci.formats.out.APNGWriter
 
getPixelTypes(String) - Method in class loci.formats.out.AVIWriter
 
getPixelTypes(String) - Method in class loci.formats.out.EPSWriter
 
getPixelTypes(String) - Method in class loci.formats.out.ICSWriter
 
getPixelTypes(String) - Method in class loci.formats.out.ImageIOWriter
 
getPixelTypes(String) - Method in class loci.formats.out.JavaWriter
 
getPixelTypes(String) - Method in class loci.formats.out.JPEG2000Writer

Overridden to return the formats supported by the writer.

getPixelTypes(String) - Method in class loci.formats.out.JPEGWriter
 
getPixelTypes(String) - Method in class loci.formats.out.OMEXMLWriter
 
getPixelTypes(String) - Method in class loci.formats.out.QTWriter
 
getPixelTypes(String) - Method in class loci.formats.out.TiffWriter
 
getPixelTypes(String) - Method in class loci.formats.out.WlzWriter
 
getPixelTypes() - Method in class loci.formats.WriterWrapper
 
getPixelTypes(String) - Method in class loci.formats.WriterWrapper
 
getPixelTypeString(int) - Static method in class loci.formats.FormatTools

Takes a pixel type value and gets a corresponding string representation.

getPixelValue(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getPlanarConfiguration() - Method in class loci.formats.tiff.IFD

Retrieves the image's planar configuration (TIFF tag PlanarConfiguration)
 from this IFD.

getPlane(int) - Method in class ome.xml.model.Pixels
 
getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneByteOffset(int, int, int) - Method in class loci.formats.in.DeltavisionReader

Given any specific Z, W, and T of a plane, determine the absolute
 byte offset of the plane in the file.

getPlaneCount() - Method in class loci.formats.FormatWriter

Retrieve the total number of planes in the current series.

getPlaneCount() - Method in class loci.formats.out.TiffWriter
 
getPlaneCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneCount() - Method in class ome.xml.model.TiffData
 
getPlaneDeltaT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneDeltaT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneDeltaT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneDeltaT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneExposureTime(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneExposureTime(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneExposureTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneExposureTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneHashSHA1(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneHashSHA1(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneMaximum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the maximum pixel value for the specified plane.

getPlaneMinimum(int) - Method in class loci.formats.MinMaxCalculator

Retrieves the minimum pixel value for the specified plane.

getPlanePositionX(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlanePositionX(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlanePositionX(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlanePositionX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlanePositionX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlanePositionY(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlanePositionY(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlanePositionY(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlanePositionY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlanePositionY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlanePositionZ(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlanePositionZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlanePositionZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlanePositionZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlanePositionZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneSize(IFormatReader) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a single plane.

getPlaneSize(IFormatReader, int, int) - Static method in class loci.formats.FormatTools

Returns the size in bytes of a w * h tile.

getPlaneTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlaneTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlaneTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlaneTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlaneTimingDeltaT(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlaneTimingExposureTime(Double[], Double) - Method in class loci.plugins.macro.LociFunctions
 
getPlate(int) - Method in class ome.xml.model.OME
 
getPlate() - Method in class ome.xml.model.PlateAcquisition
 
getPlate() - Method in class ome.xml.model.Well
 
getPlateAcquisition(int) - Method in class ome.xml.model.Plate
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionEndTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionEndTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionMaximumFieldCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionStartTime(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionStartTime(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAcquisitionWellSampleRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateColumnNamingConvention(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateColumnNamingConvention(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateColumns(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateColumns(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateColumns(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateColumns(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateCount() - Method in class ome.xml.meta.AggregateMetadata
 
getPlateCount() - Method in class ome.xml.meta.DummyMetadata
 
getPlateCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateExternalIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateExternalIdentifier(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateExternalIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateExternalIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateFieldIndex(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateFieldIndex(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateFieldIndex(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateFieldIndex(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateID(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateName(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateRowNamingConvention(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateRowNamingConvention(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateRowNamingConvention(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateRowNamingConvention(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateRows(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateRows(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateRows(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateRows(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateStatus(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateStatus(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateStatus(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateStatus(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateWellOriginX(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateWellOriginX(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateWellOriginX(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateWellOriginX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPlateWellOriginY(int) - Method in class ome.xml.meta.AggregateMetadata
 
getPlateWellOriginY(int) - Method in class ome.xml.meta.DummyMetadata
 
getPlateWellOriginY(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPlateWellOriginY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPockelCell() - Method in class ome.xml.model.Laser
 
getPockelCellSetting() - Method in class ome.xml.model.Channel
 
getPointFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the point number field for the DataFormat record.

getPoints() - Method in class ome.xml.model.Polygon
 
getPoints() - Method in class ome.xml.model.Polyline
 
getPointStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointX(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointX(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPointY(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPointY(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPointY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPointY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonPoints(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonPoints(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonPoints(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonPoints(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolygonVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolygonVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolygonVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolygonVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineMarkerEnd(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineMarkerEnd(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineMarkerStart(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineMarkerStart(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylinePoints(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylinePoints(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylinePoints(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylinePoints(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPolylineVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getPolylineVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getPolylineVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getPolylineVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getPos() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Returns the stream position clamped to a maximum of
 Integer.MAX_VALUE.

getPos() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the current offset in the file

getPos() - Method in interface jj2000.j2k.io.RandomAccessIO

Returns the current position in the stream, which is the position from
 where the next byte of data would be read.

getPos() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the current position in the stream, which is the
 position from where the next byte of data would be read.

getPos() - Method in class loci.poi.hssf.record.RecordInputStream
 
getPositionNames() - Method in class loci.formats.in.ND2Handler
 
getPositionOfBof() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the offset in bytes of the Beginning of File Marker within the HSSF Stream part of the POIFS file

getPositionX() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the X stage position associated with this Frame.

getPositionX() - Method in class ome.xml.model.Plane
 
getPositionX() - Method in class ome.xml.model.WellSample
 
getPositionY() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Y stage position associated with this Frame.

getPositionY() - Method in class ome.xml.model.Plane
 
getPositionY() - Method in class ome.xml.model.WellSample
 
getPositionZ() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the Z stage position associated with this Frame.

getPositionZ() - Method in class ome.xml.model.Plane
 
getPossible(String) - Method in class loci.plugins.prefs.OptionsList

Gets the possible values for the string option with the given key.

getPossible() - Method in class loci.plugins.prefs.StringOption

Gets the list of possible values.

getPossibleDomains(String) - Method in class loci.formats.FormatReader
 
getPossibleDomains(String) - Method in interface loci.formats.IFormatReader

Returns a list of scientific domains in which this format is used.

getPossibleDomains(String) - Method in class loci.formats.ImageReader
 
getPossibleDomains(String) - Method in class loci.formats.ReaderWrapper
 
getPossiblePositions() - Method in class loci.formats.cache.CacheStrategy

Gets positions to consider for possible inclusion in the cache,
 assuming a current position at the origin (0).

getPossiblePositions() - Method in class loci.formats.cache.CrosshairStrategy
 
getPossiblePositions() - Method in class loci.formats.cache.RectangleStrategy
 
getPower() - Method in class ome.xml.model.LightSource
 
getPowers() - Method in class loci.formats.in.ND2Handler
 
getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition width for the specified tile-component
 and (tile-component) resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition width for the specified tile-component
 and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition width for the specified component,
 resolution level and tile.

getPPX(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the width of a packet for the specified tile-
 component and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition width for the specified
 component, tile and resolution level.

getPPX(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition width in component 'n' and tile 't' at
 resolution level 'rl'.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the precinct partition height for the specified tile-component
 and (tile-component) resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the precinct partition height for the specified component, tile
 and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Returns the precinct partition height for the specified component,
 resolution level and tile.

getPPY(int, int, int) - Method in interface jj2000.j2k.entropy.encoder.CodedCBlkDataSrcEnc

Returns the height of a packet for the specified tile-
 component and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Returns the precinct partition height for the specified
 component, tile and resolution level.

getPPY(int, int, int) - Method in class jj2000.j2k.entropy.PrecinctSizeSpec

Returns the precinct partition height in component 'n' and tile 't' at
 resolution level 'rl'.

getPrecedence() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox

Returns Precedence.

getPrecinctPartition() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets precinctPartition

getPrecInfo(int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder

Get PrecInfo instance of the specified resolution level, component and
 precinct.

getPrecInfo(int, int, int, int) - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns information about a given precinct

getPreferredEncoding() - Static method in class loci.poi.util.StringUtil
 
getPreferredSize() - Method in class loci.formats.gui.CacheIndicator
 
getPreferredSize() - Method in class loci.formats.gui.PreviewPane
 
getPreferredSize() - Method in class loci.poi.hssf.usermodel.HSSFPicture

Calculate the preferred size for this picture.

getPreferredSize() - Method in class loci.tests.ImageTester
 
getPrefix() - Method in class loci.formats.FilePattern

Gets the pattern's text string before any numerical ranges.

getPrefix(int) - Method in class loci.formats.FilePattern

Gets the pattern's text string before the given numerical block.

getPrefix(String) - Method in class loci.formats.in.ZeissTIFFReader
 
getPrefixes() - Method in class loci.formats.FilePattern

Gets the pattern's text string before each numerical block.

getPreOffset() - Method in class loci.poi.hssf.model.Sheet

get the preoffset when using DBCELL records (currently unused) - this is
 the position of this sheet within the whole file.

getPresentationFormat() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the presentation format (or
 null).

getPreviousChild() - Method in interface loci.poi.poifs.property.Child

Get the previous Child, if any

getPreviousChild() - Method in class loci.poi.poifs.property.Property

Get the previous Child, if any

getPreviousSibling() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
getPrintArea(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Retrieves the reference for the printarea of the specified sheet, the sheet name is appended to the reference even if it was not specified.

getPrintGridlines() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintGridlinesRecord.

getPrintGridlines() - Method in class loci.poi.hssf.record.PrintGridlinesRecord

get whether or not to print the gridlines (and make your spreadsheet ugly)

getPrintHeaders() - Method in class loci.poi.hssf.record.PrintHeadersRecord

get whether to print the headers - y/n

getPrintSetup() - Method in class loci.poi.hssf.model.Sheet

Returns the PrintSetupRecord.

getPrintSetup() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Gets the print setup object.

getPriorities() - Method in class loci.formats.cache.CacheStrategy
 
getPriorities() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the priority for caching each axis.

getProcessor(int) - Method in class loci.plugins.util.BFVirtualStack
 
getProgressionName() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressionType() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets progressionType.

getProgressionType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets progressionType

getProgressMaximum() - Method in class loci.common.StatusEvent

Gets progress maximum.

getProgressValue() - Method in class loci.common.StatusEvent

Gets progress value.

getProgressWatch() - Static method in class jj2000.j2k.util.FacilityManager

Returns the ProgressWatch instance registered with the current
 thread (the thread that calls this method).

getProject(int) - Method in class ome.xml.model.OME
 
getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectCount() - Method in class ome.xml.meta.AggregateMetadata
 
getProjectCount() - Method in class ome.xml.meta.DummyMetadata
 
getProjectCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectDatasetRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectDatasetRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectDatasetRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectDatasetRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectExperimenterGroupRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectExperimenterGroupRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectExperimenterRef(int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectExperimenterRef(int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectExperimenterRef(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectExperimenterRef(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectID(int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProjectName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getProjectName(int) - Method in class ome.xml.meta.DummyMetadata
 
getProjectName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getProjectName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getProperties() - Method in class loci.poi.hpsf.MutableSection

Gets this section's properties.

getProperties() - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the Property array
 contained in this property set.

getProperties() - Method in class loci.poi.hpsf.Section

Returns this section's properties.

getProperties() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getProperty(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Gets a property from the property set of this image.

getProperty(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getProperty(long) - Method in class loci.poi.hpsf.MutableSection

Gets a property.

getProperty(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the property with
 the specified ID.

getProperty(long) - Method in class loci.poi.hpsf.Section

Returns the value of the property with the specified ID.

getProperty(int) - Method in class loci.poi.hpsf.SpecialPropertySet
 
getProperty() - Method in class loci.poi.poifs.filesystem.EntryNode

grant access to the property

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of a boolean property
 with the specified ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.Section

Returns the value of the boolean property with the specified
 ID.

getPropertyBooleanValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet
 
getPropertyCount() - Method in class loci.poi.hpsf.MutableSection

Overwrites the super class' method to cope with a redundancy:
 the property count is maintained in a separate member variable, but
 shouldn't.

getPropertyCount() - Method in class loci.poi.hpsf.Section

Returns the number of properties in this section.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.PropertySet

Convenience method returning the value of the numeric
 property with the specified ID.

getPropertyIntValue(long) - Method in class loci.poi.hpsf.Section

Returns the value of the numeric property with the specified
 ID.

getPropertyIntValue(int) - Method in class loci.poi.hpsf.SpecialPropertySet
 
getPropertyName(short) - Static method in class loci.poi.ddf.EscherProperties
 
getPropertyNames() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns a list of the properties recognized by this image.

getPropertyNames(String) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns an array of Strings recognized as names by
 this property source that begin with the supplied prefix.

getPropertyNames() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getPropertyNumber() - Method in class loci.poi.ddf.EscherProperty
 
getPropertySet(String) - Method in class loci.poi.POIDocument

For a given named property entry, either return it or null if
  if it wasn't found

getPropertySize() - Method in class loci.poi.ddf.EscherComplexProperty

Caclulates the number of bytes required to serialize this property.

getPropertySize() - Method in class loci.poi.ddf.EscherProperty

Most properties are just 6 bytes in length.

getPropertyStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader

get start of Property Table

getPropertyType(short) - Static method in class loci.poi.ddf.EscherProperties
 
getPropertyValue() - Method in class loci.poi.ddf.EscherSimpleProperty
 
getProtect() - Method in class loci.poi.hssf.model.Sheet

Returns the ProtectRecord.

getProtect() - Method in class loci.poi.hssf.record.ObjectProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ProtectionRev4Record

get whether the this is protected shared/tracked workbook or not

getProtect() - Method in class loci.poi.hssf.record.ProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.ScenarioProtectRecord

get whether the sheet is protected or not

getProtect() - Method in class loci.poi.hssf.record.WindowProtectRecord

is this window protected or not

getProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether protection is enabled or disabled

getProtocolDescription() - Method in class ome.xml.model.Screen
 
getProtocolIdentifier() - Method in class ome.xml.model.Screen
 
getProtpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getPtgClass() - Method in class loci.poi.hssf.record.formula.Ptg

returns the class (REF/VALUE/ARRAY) for this Ptg

getPulse(String) - Method in class loci.formats.FormatReader

Retrieves an Pulse enumeration
 value for the given String.

getPulse() - Method in class ome.xml.model.Laser
 
getQTVersion() - Method in class loci.formats.gui.LegacyQTTools

Gets the QuickTime for Java version number.

getQuantizationStep() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationStep

getQuantizationType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets quantizationType

getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC
 
getQuantType() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD
 
getQuantTypeSpec() - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns the quantization type spec object associated to the quantizer.

getQuietInfo() - Method in class loci.plugins.in.ImporterOptions
 
getRadiusX() - Method in class ome.xml.model.Ellipse
 
getRadiusY() - Method in class ome.xml.model.Ellipse
 
getRandomAccessFile() - Method in class loci.common.FileHandle

Gets the random access file object backing this FileHandle.

getRandomAccessFile() - Method in class loci.common.NIOFileHandle

Gets the random access file object backing this FileHandle.

getRange() - Method in class loci.formats.cache.CacheStrategy
 
getRange() - Method in interface loci.formats.cache.ICacheStrategy

Retrieves the number of objects to cache along each axis.

getRange() - Method in class loci.poi.hssf.util.RangeAddress
 
getRasterLength(int[]) - Static method in class loci.formats.FormatTools

Computes the number of raster values for a positional array
 with the given lengths.

getRaw() - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam

Returns the value of the raw parameter.

getRawData() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getRawDataSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord
 
getRawImageType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

Returns an ImageTypeSpecifier describing an image
 whose underlying data array has the same format as the raw
 source pixel data.

getRawImageTypeSpecifier(int, int, int, int[], int[], int[], char[]) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

A utility method that returns an
 ImageTypeSpecifier suitable for decoding an image
 with the given parameters.

getRawSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the raw sheetname in characters
 the length depends on the unicode flag

getRawValue(int) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getReader() - Method in class loci.formats.FileStitcher

Gets the wrapped reader prototype.

getReader(int) - Method in class loci.formats.FileStitcher

Gets the reader appropriate for use with the given image plane.

getReader(int, int) - Method in class loci.formats.FileStitcher

Gets the reader that should be used with the given series and image plane.

getReader(IFormatReader, Class<? extends IFormatReader>) - Static method in class loci.formats.FormatTools

Recursively look for the first underlying reader that is an
 instance of the given class.

getReader() - Method in class loci.formats.gui.FormatFileFilter

Returns the filter's reader.

getReader(String) - Method in class loci.formats.ImageReader

Gets the reader used to open the given file.

getReader() - Method in class loci.formats.ImageReader

Gets the reader used to open the current file.

getReader(Class<? extends IFormatReader>) - Method in class loci.formats.ImageReader

Gets the file format reader instance matching the given class.

getReader() - Method in class loci.formats.ReaderWrapper

Gets the wrapped reader.

getReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getReader() - Method in class loci.plugins.util.BFVirtualStack
 
getReader() - Method in class loci.tests.testng.Configuration
 
getReaders() - Method in class loci.formats.ImageReader

Gets all constituent file format readers.

getReadingOrder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the reading order for far east versions (0 - Context, 1 - Left to right,
 2 - right to left) - We could use some help with support for the far east.

getReadOnly() - Method in class loci.poi.hssf.record.FileSharingRecord

get the readonly

getReadOutRate() - Method in class loci.formats.in.MetamorphHandler
 
getReadOutRate() - Method in class ome.xml.model.DetectorSettings
 
getReagent(int) - Method in class ome.xml.model.Screen
 
getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getReagentAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getReagentAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getReagentAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getReagentAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getReagentCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getReagentCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getReagentCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getReagentCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getReagentDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getReagentDescription(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getReagentDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getReagentDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getReagentID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getReagentID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getReagentID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getReagentID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getReagentIdentifier() - Method in class ome.xml.model.Reagent
 
getReagentName(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getReagentName(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getReagentName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getReagentName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getReagentReagentIdentifier(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getReagentReagentIdentifier(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getReagentSetDescription() - Method in class ome.xml.model.Screen
 
getReagentSetIdentifier() - Method in class ome.xml.model.Screen
 
getReason() - Method in exception loci.poi.hpsf.HPSFException

Returns the Throwable that caused this exception to
 be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hpsf.HPSFRuntimeException

Returns the Throwable that caused this exception to
 be thrown or null if there was no such Throwable.

getReason() - Method in exception loci.poi.hssf.eventusermodel.HSSFUserException

Returns the Throwable that caused this exception to
 be thrown or null if there was no such Throwable.

getRecalc() - Method in class loci.poi.hssf.record.SaveRecalcRecord

get whether to recalculate formulas/etc before saving or not

getRecalcIdArray() - Method in class loci.poi.hssf.record.RecalcIdRecord

get the recalc array.

getRecordedProcessor() - Method in class loci.plugins.util.BFVirtualStack
 
getRecordId() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The record id for the EscherChildAnchorRecord.

getRecordId() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The record id for this record.

getRecordId() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the identifier of this record.

getRecordId() - Method in class loci.poi.ddf.EscherDggRecord
 
getRecordId() - Method in class loci.poi.ddf.EscherDgRecord
 
getRecordId() - Method in class loci.poi.ddf.EscherRecord

Return the current record id.

getRecordId() - Method in class loci.poi.ddf.EscherSpgrRecord

The 16 bit identifier of this shape group record.

getRecordId() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord
 
getRecordId() - Method in class loci.poi.ddf.EscherSpRecord
 
getRecordName() - Method in class loci.poi.ddf.EscherBlipRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBlipWMFRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherBSERecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherChildAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherClientDataRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherContainerRecord
 
getRecordName() - Method in class loci.poi.ddf.EscherDggRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherDgRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherOptRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherRecord

Subclasses should return the short name for this escher record.

getRecordName() - Method in class loci.poi.ddf.EscherSpgrRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherSpRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.EscherTextboxRecord

The short name for this record

getRecordName() - Method in class loci.poi.ddf.UnknownEscherRecord

The short name for this record

getRecordName() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getRecordName() - Method in class loci.poi.hssf.record.DrawingGroupRecord
 
getRecordName() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
getRecordName() - Method in class loci.poi.hssf.record.DrawingSelectionRecord
 
getRecordName() - Method in class loci.poi.hssf.record.EscherAggregate
 
getRecordOffset() - Method in class loci.poi.hssf.record.RecordInputStream
 
getRecords() - Method in class loci.poi.hssf.model.Sheet
 
getRecords() - Method in class loci.poi.hssf.model.Workbook
 
getRecords() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getRecordSize() - Method in class loci.poi.ddf.EscherBitmapBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherBSERecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherChildAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherClientDataRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherContainerRecord
 
getRecordSize() - Method in class loci.poi.ddf.EscherDggRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherDgRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherMetafileBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherOptRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherPictBlip

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherRecord

Subclasses should effeciently return the number of bytes required to
 serialize the record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpgrRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSplitMenuColorsRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherSpRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.EscherTextboxRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.ddf.UnknownEscherRecord

Returns the number of bytes that are required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Size of record (including 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
getRecordSize() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getRecordSize() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
getRecordSize() - Method in class loci.poi.hssf.record.AreaFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisLineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisOptionsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisParentRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.AxisUsedRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BackupRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BarRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BeginRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BlankRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BOFRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BookBoolRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.BottomMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.BoundSheetRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CalcCountRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CalcModeRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ChartRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CodepageRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ColumnInfoRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.CountryRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DataFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DateWindow1904Record
 
getRecordSize() - Method in class loci.poi.hssf.record.DatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DBCellRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DeltaRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DimensionsRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DrawingGroupRecord

Size of record (including 4 byte headers for all sections)

getRecordSize() - Method in class loci.poi.hssf.record.DrawingRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.DSFRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EndRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.EndSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.EOFRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.EscherAggregate

The number of bytes required to serialize this record.

getRecordSize() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ExtSSTRecord

Returns the size of this record

getRecordSize() - Method in class loci.poi.hssf.record.FilePassRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FnGroupCountRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FontBasisRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.FontRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FooterRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FormatRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FormulaRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.FrameRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GridsetRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.GutsRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.HCenterRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.HeaderRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.HideObjRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.IndexRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.InterfaceEndRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.InterfaceHdrRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.IterationRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.LeftMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LegendRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LineFormatRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.LinkedDataRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.MergeCellsRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.MMSRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.NameRecord

returns the record size

getRecordSize() - Method in class loci.poi.hssf.record.NoteRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NoteStructureSubRecord

Size of record

getRecordSize() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.NumberRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ObjectLinkRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.ObjectProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ObjRecord

Size of record (excluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PaletteRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PaneRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PasswordRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PasswordRev4Record
 
getRecordSize() - Method in class loci.poi.hssf.record.PlotAreaRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.PrecisionRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PrintHeadersRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ProtectionRev4Record
 
getRecordSize() - Method in class loci.poi.hssf.record.ProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.RecalcIdRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.Record

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.RefModeRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.RefreshAllRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.RightMarginRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.RowRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SaveRecalcRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SCLRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SelectionRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesIndexRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesListRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesTextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.SSTRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.StringRecord

gives the current serialized size of the record.

getRecordSize() - Method in class loci.poi.hssf.record.StyleRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.SupBookRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.TabIdRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TextObjectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.TextRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TickRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.TopMarginRecord

Size of record (exluding 4 byte header)

getRecordSize(UnicodeString.UnicodeRecordStats) - Method in class loci.poi.hssf.record.UnicodeString
 
getRecordSize() - Method in class loci.poi.hssf.record.UnitsRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.UnknownRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.UseSelFSRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.ValueRangeRecord

Size of record (exluding 4 byte header)

getRecordSize() - Method in class loci.poi.hssf.record.VCenterRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WindowOneRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WindowProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WindowTwoRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WriteAccessRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WriteProtectRecord
 
getRecordSize() - Method in class loci.poi.hssf.record.WSBoolRecord
 
getRecordSizeForBlockCount(int) - Static method in class loci.poi.hssf.record.IndexRecord

Returns the size of an INdexRecord when it needs to index the specified number of blocks

getRecordSizeForRows(int) - Static method in class loci.poi.hssf.record.DBCellRecord

Returns the size of a DBCellRecord when it needs to reference a certain number of rows

getRecordSizeForStrings(int) - Static method in class loci.poi.hssf.record.ExtSSTRecord

Given a number of strings (in the sst), returns the size of the extsst record

getRectangleFillColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleFillColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleFillColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleFillColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleFillRule(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleFillRule(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleFillRule(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleFillRule(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleFontFamily(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleFontFamily(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleFontFamily(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleFontFamily(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleFontSize(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleFontSize(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleFontSize(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleFontSize(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleFontStyle(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleFontStyle(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleFontStyle(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleFontStyle(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleHeight(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleHeight(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleHeight(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleHeight(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleLineCap(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleLineCap(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleLineCap(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleLineCap(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleLocked(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleLocked(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleLocked(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleLocked(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleStrokeColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleStrokeColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleStrokeDashArray(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleStrokeDashArray(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleStrokeWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleStrokeWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleText(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleText(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleText(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleText(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleTheC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleTheC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleTheC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleTheC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleTheT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleTheT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleTheT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleTheT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleTheZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleTheZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleTheZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleTheZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleTransform(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleTransform(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleTransform(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleTransform(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleVisible(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleVisible(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleVisible(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleVisible(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleWidth(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleWidth(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleWidth(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleWidth(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleX(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleX(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleX(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleX(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectangleY(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getRectangleY(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getRectangleY(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRectangleY(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRectX1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectX2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRectY1() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting top-left coordinate of child records.

getRectY2() - Method in class loci.poi.ddf.EscherSpgrRecord

The starting bottom-right coordinate of child records.

getRed(int) - Method in class loci.formats.gui.Index16ColorModel
 
getRed(int) - Method in class loci.formats.gui.SignedColorModel
 
getRed(Object) - Method in class loci.formats.gui.SignedColorModel
 
getRed(int) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getRed(Object) - Method in class loci.formats.gui.UnsignedIntColorModel
 
getRed() - Method in class loci.poi.ddf.EscherRGBProperty
 
getRed() - Method in class ome.xml.model.primitives.Color

Returns the red component of this color.

getReds() - Method in class loci.formats.gui.Index16ColorModel

Return the array of red color components.

getRef() - Method in class loci.poi.ddf.EscherBSERecord

The reference count of this blip.

getReference() - Method in class loci.poi.hssf.usermodel.HSSFName

gets the reference of the named range

getReferences() - Method in interface ome.xml.model.OMEModel
 
getReferences() - Method in class ome.xml.model.OMEModelImpl
 
getReferenceType() - Method in class loci.poi.hssf.record.LinkedDataRecord

Get the reference type field for the LinkedData record.

getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefAPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNAPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefNVPtg
 
getRefPtgName() - Method in class loci.poi.hssf.record.formula.RefVPtg
 
getRefractiveIndex() - Method in class loci.formats.in.ND2Handler
 
getRefractiveIndex() - Method in class ome.xml.model.ObjectiveSettings
 
getREFRecordAt(int) - Method in class loci.poi.hssf.record.ExternSheetRecord

returns the REF record (ExternSheetSubRecord)

getRefreshAll() - Method in class loci.poi.hssf.record.RefreshAllRecord

get whether to refresh all external data when loading a sheet

getRelativeTime() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the relativeTime associated with this Frame.

getRemainingData() - Method in class loci.poi.ddf.EscherBSERecord

Any remaining data in this record.

getRemainingData() - Method in class loci.poi.ddf.EscherClientAnchorRecord

Any remaining data in the record

getRemainingData() - Method in class loci.poi.ddf.EscherClientDataRecord

Any data recording this record.

getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getRenderingHint(RenderingHints.Key) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getRenderingHints() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getRenderingHints() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getReorderedIndex(IFormatReader, String, int) - Static method in class loci.formats.FormatTools

Converts index from the given dimension order to the reader's native one.

getReorderedIndex(String, String, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Converts index from one dimension order to another.

getRepetitionRate() - Method in class ome.xml.model.Laser
 
getRequiredDirectories(String[]) - Method in class loci.formats.FormatReader
 
getRequiredDirectories(String[]) - Method in interface loci.formats.IFormatReader

Returns the number of parent directories that are important when
 processing the given list of files.

getRequiredDirectories(String[]) - Method in class loci.formats.ImageReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.BrukerReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.CellVoyagerReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.L2DReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.MIASReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.in.OperettaReader
 
getRequiredDirectories(String[]) - Method in class loci.formats.ReaderWrapper
 
getRequiredVersion() - Method in class loci.poi.hssf.record.BOFRecord

get the minimum version required to read this file

getReserved() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getReserved() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
 
getReserved() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the reserved bits - why would you do this?

getReserved1() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved1 field for the Axis record.

getReserved1() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved1 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved2 field for the Axis record.

getReserved2() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved2 field for the CommonObjectData record.

getReserved2() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getReserved3() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved3 field for the Axis record.

getReserved3() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

Get the reserved3 field for the CommonObjectData record.

getReserved3() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getReserved4() - Method in class loci.poi.hssf.record.AxisRecord

Get the reserved4 field for the Axis record.

getReserved4() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved4 field for the TextObjectBase record.

getReserved5() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved5 field for the TextObjectBase record.

getReserved6() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved6 field for the TextObjectBase record.

getReserved7() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the reserved7 field for the TextObjectBase record.

getResetMQ() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets resetMQ

getResolution() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Gets resolution.

getResolution() - Method in class loci.formats.FormatReader
 
getResolution() - Method in interface loci.formats.IFormatReader

Get the current resolution level.

getResolution() - Method in class loci.formats.ImageReader
 
getResolution() - Method in class loci.formats.ReaderWrapper
 
getResolution(ImageReader) - Method in class loci.poi.hssf.usermodel.HSSFPicture

The metadata of PNG and JPEG can contain the width of a pixel in millimeters.

getResolutionCount() - Method in class loci.formats.FormatReader
 
getResolutionCount() - Method in interface loci.formats.IFormatReader

Return the number of resolutions for the current series.

getResolutionCount() - Method in class loci.formats.ImageReader
 
getResolutionCount() - Method in class loci.formats.ReaderWrapper
 
getResolutionLevels() - Method in class loci.formats.in.JPEG2000MetadataParser

Returns the number of resolution levels the file JPEG 2000 data has.

getResolutionMultiplier() - Method in class loci.formats.tiff.IFD

Retrieve the value by which to multiply the X and Y resolution so that
 the resolutions are in microns per pixel.

getRestartMarkers() - Method in interface loci.formats.services.JPEGTurboService
 
getRestartMarkers() - Method in class loci.formats.services.JPEGTurboServiceImpl
 
getResult() - Method in interface mdbtools.dbengine.functions.Aggregate
 
getResult() - Method in class mdbtools.dbengine.functions.Count
 
getResult() - Method in class mdbtools.dbengine.functions.Max
 
getResult() - Method in class mdbtools.dbengine.functions.Min
 
getResult() - Method in class mdbtools.dbengine.functions.Sum
 
getResult() - Method in class mdbtools.dbengine.tasks.AggregateQuery
 
getResult() - Method in class mdbtools.dbengine.tasks.FilterData
 
getResult() - Method in class mdbtools.dbengine.tasks.LoadData
 
getResult() - Method in class mdbtools.dbengine.tasks.NonAggregateQuery
 
getResult() - Method in class mdbtools.dbengine.tasks.SimpleSort
 
getResult() - Method in interface mdbtools.dbengine.tasks.Task
 
getResULX(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal coordinate of the upper-left corner of the
 specified resolution in the given component of the current tile.

getResULX(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal coordinate of the upper-left corner of the
 specified resolution in the given component of the current tile.

getResULX(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal coordinate of the upper-left corner of the
 specified resolution level in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical coordinate of the upper-left corner of the
 specified component in the given component of the current tile.

getResULY(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical coordinate of the upper-left corner of the
 specified resolution in the given component of the current tile.

getResULY(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical coordinate of the upper-left corner of the
 specified resolution in the given component of the current tile.

getRevision(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getRevNumber() - Method in class loci.poi.hpsf.SummaryInformation

Returns the revision number (or null).

getRGB() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
getRGBChannelCount() - Method in class loci.formats.FormatReader
 
getRGBChannelCount() - Method in interface loci.formats.IFormatReader

Gets the number of channels returned with each call to openBytes.

getRGBChannelCount() - Method in class loci.formats.ImageReader
 
getRGBChannelCount() - Method in class loci.formats.ReaderWrapper
 
getRGBChannelCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getRgbColor() - Method in class loci.poi.ddf.EscherRGBProperty
 
getRgbColor() - Method in class loci.poi.hssf.record.TextRecord

Get the rgbColor field for the Text record.

getRichStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

get the value of the cell as a string - for numeric cells we throw an exception.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFFooter

Get the right side of the footer.

getRight() - Method in class loci.poi.hssf.usermodel.HSSFHeader

Get the right side of the header.

getRight() - Method in class mdbtools.dbengine.sql.Condition
 
getRight() - Method in class mdbtools.dbengine.sql.Equation
 
getRight() - Method in class mdbtools.dbengine.sql.Join
 
getRightBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the left border

getRightBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the right border color

getRights() - Method in class ome.xml.model.OME
 
getRightsHeld() - Method in class ome.xml.model.Rights
 
getRightsHolder() - Method in class ome.xml.model.Rights
 
getRightsRightsHeld(int) - Method in class ome.xml.meta.AggregateMetadata
 
getRightsRightsHeld(int) - Method in class ome.xml.meta.DummyMetadata
 
getRightsRightsHeld(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRightsRightsHeld(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRightsRightsHolder(int) - Method in class ome.xml.meta.AggregateMetadata
 
getRightsRightsHolder(int) - Method in class ome.xml.meta.DummyMetadata
 
getRightsRightsHolder(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getRightsRightsHolder(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRKField() - Method in class loci.poi.hssf.record.RKRecord
 
getRKNumber() - Method in class loci.poi.hssf.record.RKRecord

Extract the value of the number

getRKNumberAt(int) - Method in class loci.poi.hssf.record.MulRKRecord

returns the rk number for column (coffset = column - field_2_first_col)

getRKType() - Method in class loci.poi.hssf.record.RKRecord

Get the type of the number

getRoi() - Method in class loci.plugins.util.RecordedImageProcessor
 
getROI(int) - Method in class ome.xml.model.OME
 
getROIAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getROIAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getROIAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getROIAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getROIAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getROIAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getROIAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getROIAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getROICount() - Method in class ome.xml.meta.AggregateMetadata
 
getROICount() - Method in class ome.xml.meta.DummyMetadata
 
getROICount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getROICount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getROIDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getROIDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getROIDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getROIDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getROIID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getROIID(int) - Method in class ome.xml.meta.DummyMetadata
 
getROIID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getROIID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getROILen() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Gives the length to read in current packet body to get all ROI
 information

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This functions gets a DataBlk the size of the current code-block an
 fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This functions gets a DataBlk the size of the current code-block and
 fills this block with the ROI mask.

getROIMask(DataBlkInt, Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This functions gets a DataBlk with the size of the current code-block
 and fills it with the ROI mask.

getROIMaskGenerator() - Method in class jj2000.j2k.roi.encoder.ROIScaler

This function returns the ROI mask generator.

getROIName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getROIName(int) - Method in class ome.xml.meta.DummyMetadata
 
getROIName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getROIName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getROINamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getROINamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getROINamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getROINamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getROIs() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets ROIs

getROIs() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function returns the ROIs in the image

getROIs() - Method in class loci.formats.in.ND2Handler
 
getRoot() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

get the root entry

getRoot() - Method in class loci.poi.poifs.property.PropertyTable

Get the root property

getRoot() - Method in class ome.xml.meta.AggregateMetadata

Unsupported with an AggregateMetadata.

getRoot() - Method in class ome.xml.meta.DummyMetadata
 
getRoot() - Method in class ome.xml.meta.FilterMetadata
 
getRoot() - Method in interface ome.xml.meta.MetadataStore
 
getRoot() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getRootIFD() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getRootName() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
getRotation() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the degree of rotation.

getRotation() - Method in class loci.poi.hssf.record.TextRecord
 
getRotation() - Method in class loci.poi.hssf.record.TickRecord

rotate text (0=none, 1=normal, 2=90 degrees counterclockwise, 3=90 degrees clockwise)

getRotation() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the degree of rotation for the text in the cell

getRotationTransform(double) - Method in class loci.formats.FormatReader
 
getRow(int, int, int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
 
getRow(int) - Method in class loci.poi.hssf.model.Sheet

get the NEXT (from LOC) RowRecord where rownumber matches the given rownum.

getRow() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getRow() - Method in class loci.poi.hssf.record.BlankRecord

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getRow() - Method in interface loci.poi.hssf.record.CellValueRecordInterface

get the row this cell occurs on

getRow() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getRow() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getRow() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as a short, which will be
  wrapped (negative) for values between 32769 and 65535

getRow() - Method in class loci.poi.hssf.record.FormulaRecord
 
getRow() - Method in class loci.poi.hssf.record.LabelRecord
 
getRow() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getRow() - Method in class loci.poi.hssf.record.MulBlankRecord

get the row number of the cells this represents

getRow() - Method in class loci.poi.hssf.record.MulRKRecord
 
getRow() - Method in class loci.poi.hssf.record.NoteRecord

Return the row that contains the comment

getRow() - Method in class loci.poi.hssf.record.NumberRecord
 
getRow() - Method in class loci.poi.hssf.record.RKRecord
 
getRow() - Method in class loci.poi.hssf.usermodel.HSSFComment

Return the row of the cell that contains the comment

getRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns the logical row (not physical) 0-based.

getRow() - Method in class loci.poi.hssf.util.CellReference
 
getRow(int) - Method in class mdbtools.dbengine.MemoryData
 
getRow() - Method in class ome.xml.model.Well
 
getRow1() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the top-left corner of the shape.

getRow1() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getRow2() - Method in class loci.poi.ddf.EscherClientAnchorRecord

The row number for the bottom-right corner of the current shape.

getRow2() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
getRowAsInt() - Method in class loci.poi.hssf.record.formula.ReferencePtg

Returns the row number as an int, between 0 and 65535

getRowBlockCount() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of row blocks.

getRowBlockSize(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
getRowBreaks() - Method in class loci.poi.hssf.model.Sheet

Returns all the row page breaks

getRowBreaks() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Retrieves all the horizontal page breaks

getRowCellBlockSize(int, int) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

Tallies a count of the size of the cell records
  that are attached to the rows in the range specified.

getRowCount(int) - Method in interface loci.formats.services.MetakitService
 
getRowCount(String) - Method in interface loci.formats.services.MetakitService
 
getRowCount(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowCount(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowCount() - Method in class loci.poi.hssf.record.formula.ArrayPtg
 
getRowCount(int) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the table with the given index.

getRowCount(String) - Method in class ome.metakit.MetakitReader

Retrieve the number of rows in the named table.

getRowCountForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the number of physical rows within a block

getRowData(int, String) - Method in interface loci.formats.services.MetakitService
 
getRowData(int, int) - Method in interface loci.formats.services.MetakitService
 
getRowData(int, String) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowData(int, int) - Method in class loci.formats.services.MetakitServiceImpl
 
getRowData(int, int) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the table with the given index.

getRowData(int, String) - Method in class ome.metakit.MetakitReader

Retrieve the given row of data from the named table.

getRowFrom() - Method in class loci.poi.hssf.util.Region

get the upper left hand corner row number

getRowHeight() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord

get the default row height

getRowLevelMax() - Method in class loci.poi.hssf.record.GutsRecord

get the maximum outline level for the row gutter.

getRowNamingConvention() - Method in class ome.xml.model.Plate
 
getRowNum() - Method in class loci.poi.hssf.usermodel.HSSFRow

get row number this row represents

getRowNumber() - Method in class loci.poi.hssf.record.RowRecord

get the logical row number for this row (0 based index)

getRowOffset() - Method in class loci.poi.hssf.record.DBCellRecord

gets offset from the start of this DBCellRecord to the start of the first cell in
 the next DBCell block.

getRowRecord() - Method in class loci.poi.hssf.usermodel.HSSFRow

get the lowlevel RowRecord represented by this object - should only be called
 by other parts of the high level API

getRows() - Method in class ome.xml.model.Plate
 
getRowsPerStrip() - Method in class loci.formats.tiff.IFD

Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip)
 from this IFD.

getRowSumsBelow() - Method in class loci.poi.hssf.record.WSBoolRecord

get if row summaries appear below detail in the outline

getRowSumsBelow() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if row summaries appear below detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.record.WSBoolRecord

get if col summaries appear right of the detail in the outline

getRowSumsRight() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get if col summaries appear right of the detail in the outline

getRowTo() - Method in class loci.poi.hssf.util.Region

get the lower right hand corner row number

getRPNPtg() - Method in class loci.poi.hssf.model.FormulaParser

API call to retrive the array of Ptgs created as 
 a result of the parsing

getRPNPtg(int) - Method in class loci.poi.hssf.model.FormulaParser
 
getSample(BitBuffer, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
 
getSampleModel() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the SampleModel of the image.

getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getSampleModel() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getSamples(IFD, byte[]) - Method in class loci.formats.tiff.TiffParser
 
getSamples(IFD, byte[], int, int, long, long) - Method in class loci.formats.tiff.TiffParser
 
getSamples(IFD, byte[], int, int, long, long, int, int) - Method in class loci.formats.tiff.TiffParser
 
getSamplesPerPixel() - Method in class loci.formats.FormatWriter

Retrieve the number of samples per pixel for the current series.

getSamplesPerPixel() - Method in class loci.formats.tiff.IFD

Retrieves the number of samples per pixel for the image (TIFF tag
 SamplesPerPixel) from this IFD.

getSamplesPerPixel() - Method in class ome.xml.model.Channel
 
getSavedInPageBreakPreview() - Method in class loci.poi.hssf.record.WindowTwoRecord

was the sheet saved in page break view

getSaveLinkValues() - Method in class loci.poi.hssf.record.BookBoolRecord

get the save ext links flag

getSBAT() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the SBAT

getSBATBlockCount() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter

Get the number of SBAT blocks

getSBATStart() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getScale() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns true when scaling of the thumbnail is
 desired, false if cropping is desired.

getScale() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the scale field for the FontBasis record.

getScale() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getScale() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the scale.

getScanline(int) - Method in class loci.formats.codec.JPEGTileDecoder
 
getScenarioProtect() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Answer whether scenario protection is enabled or disabled

getScreen(int) - Method in class ome.xml.model.OME
 
getScreen() - Method in class ome.xml.model.Reagent
 
getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenAnnotationRefCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenAnnotationRefCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenCount() - Method in class ome.xml.meta.AggregateMetadata
 
getScreenCount() - Method in class ome.xml.meta.DummyMetadata
 
getScreenCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenID(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenName(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenPlateRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenPlateRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenPlateRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenPlateRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenProtocolDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenProtocolDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenProtocolDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenProtocolDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenProtocolIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenProtocolIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenReagentSetDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenReagentSetDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenReagentSetDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenReagentSetDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenReagentSetIdentifier(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenReagentSetIdentifier(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getScreenType(int) - Method in class ome.xml.meta.AggregateMetadata
 
getScreenType(int) - Method in class ome.xml.meta.DummyMetadata
 
getScreenType(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getScreenType(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getSecondaryUID() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the secondary UID

getSectionCount() - Method in class loci.poi.hpsf.PropertySet

Returns the number of Sections in the property
 set.

getSectionCount() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getSections() - Method in class loci.poi.hpsf.PropertySet

Returns the Sections in the property set.

getSections() - Method in class loci.poi.hpsf.SpecialPropertySet
 
getSecurity() - Method in class loci.poi.hpsf.SummaryInformation

Returns a security code which is one of the following values:

getSegmentLength() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the length of the segment.

getSelected() - Method in class loci.poi.hssf.record.WindowTwoRecord

sheet tab is selected

getSelectedTab() - Method in class loci.poi.hssf.record.WindowOneRecord

get the selected tab number

getSelectedTab() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

gets the tab whose data is actually seen when the sheet is opened.

getSelection() - Method in class loci.poi.hssf.model.Sheet
 
getSequence(int) - Method in class loci.formats.in.PrairieMetadata

Gets the Sequence at the given cycle.

getSequences() - Method in class loci.formats.in.PrairieMetadata

Gets all Sequences, ordered by cycle.

getSerialNumber() - Method in class ome.xml.model.ManufacturerSpec
 
getSeries() - Method in class loci.formats.FileStitcher
 
getSeries() - Method in class loci.formats.FormatReader
 
getSeries() - Method in class loci.formats.FormatWriter
 
getSeries() - Method in interface loci.formats.IFormatReader

Gets the currently active series.

getSeries() - Method in interface loci.formats.IFormatWriter

Returns the current series.

getSeries() - Method in class loci.formats.ImageReader
 
getSeries() - Method in class loci.formats.ImageWriter
 
getSeries() - Method in class loci.formats.ReaderWrapper
 
getSeries() - Method in class loci.formats.WriterWrapper
 
getSeries(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesCount() - Method in class loci.formats.FileStitcher
 
getSeriesCount() - Method in class loci.formats.FormatReader
 
getSeriesCount() - Method in interface loci.formats.IFormatReader

Gets the number of series in this file.

getSeriesCount() - Method in class loci.formats.ImageReader
 
getSeriesCount() - Method in class loci.formats.in.ND2Handler
 
getSeriesCount() - Method in class loci.formats.ReaderWrapper
 
getSeriesCount() - Method in class loci.formats.TileStitcher
 
getSeriesCount() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesCount() - Method in class loci.tests.testng.Configuration
 
getSeriesIndex() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series index field for the DataFormat record.

getSeriesLabel(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getSeriesMeta(String) - Method in class loci.formats.FormatReader

Gets an entry from the metadata table for the current series.

getSeriesMetadata() - Method in class loci.formats.FileStitcher
 
getSeriesMetadata() - Method in class loci.formats.FormatReader
 
getSeriesMetadata() - Method in interface loci.formats.IFormatReader

Obtains the hashtable containing metadata field/value pairs from the
 current series in the current file.

getSeriesMetadata() - Method in class loci.formats.ImageReader
 
getSeriesMetadata() - Method in class loci.formats.ReaderWrapper
 
getSeriesMetadataValue(String) - Method in class loci.formats.FormatReader
 
getSeriesMetadataValue(String) - Method in interface loci.formats.IFormatReader

Obtains the specified metadata field's value for the current series
 in the current file.

getSeriesMetadataValue(String) - Method in class loci.formats.ImageReader
 
getSeriesMetadataValue(String) - Method in class loci.formats.ReaderWrapper
 
getSeriesMetadataValue(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesName(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getSeriesNumber() - Method in class loci.poi.hssf.record.DataFormatRecord

Get the series number field for the DataFormat record.

getSeriesNumbers() - Method in class loci.poi.hssf.record.SeriesListRecord

Get the series numbers field for the SeriesList record.

getSeriesUsedFiles() - Method in class loci.formats.FileStitcher
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getSeriesUsedFiles() - Method in class loci.formats.FormatReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getSeriesUsedFiles() - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open the current series.

getSeriesUsedFiles() - Method in class loci.formats.ImageReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AFIReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.AnalyzeReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.APLReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BDReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BioRadReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.BrukerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellomicsReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellSensReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellVoyagerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.CellWorxReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DeltavisionReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.DicomReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FakeReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FlexReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FujiReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.FV1000Reader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.HitachiReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ICSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImagicReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.InCellReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.JEOLReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.L2DReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.LeicaReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MetamorphReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MIASReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.MicromanagerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NDPISReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NiftiReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.NRRDReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OMETiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.OperettaReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PCORAWReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PDSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PerkinElmerReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.PrairieReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScanrReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ScreenReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.SlidebookTiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TCSReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TiffReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TillVisionReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.TrestleReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VarianFDFReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VisitechReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.VolocityReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissCZIReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissLSMReader
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.in.ZeissTIFFReader
 
getSeriesUsedFiles() - Method in class loci.formats.ReaderWrapper
 
getSeriesUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getService() - Method in class loci.formats.Memoizer
 
getSHA1() - Method in class ome.xml.model.External
 
getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

Returns a TIFFIFD wherein all fields from the
 BaselineTIFFTagSet are copied by value and all other
 fields copied by reference.

getShallowClone() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata

Returns a TIFFImageMetadata wherein all fields in the
 root IFD from the BaselineTIFFTagSet are copied by value
 and all other fields copied by reference.

getShape(int) - Method in class ome.xml.model.Union
 
getShapeCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getShapeCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getShapeCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getShapeCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getShapeId() - Method in class loci.poi.ddf.EscherSpRecord
 
getShapeId() - Method in class loci.poi.hssf.record.NoteRecord

Object id for OBJ record that contains the comment

getShapeIdMax() - Method in class loci.poi.ddf.EscherDggRecord
 
getShapeType() - Method in class loci.poi.hssf.usermodel.HSSFSimpleShape

Gets the shape type.

getShapeType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getShapeType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getShapeType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getShapeType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getSheet() - Method in class loci.poi.hssf.usermodel.HSSFSheet

used internally in the API to get the low level Sheet record represented by this
 Object.

getSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get sheet with the given name

getSheetAt(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Get the HSSFSheet object at the given index.

getSheetIndex(String) - Method in class loci.poi.hssf.model.Workbook

get the sheet's index

getSheetIndex(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the sheet by his name

getSheetIndex(HSSFSheet) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Returns the index of the given sheet

getSheetIndexFromExternSheetIndex(int) - Method in class loci.poi.hssf.model.Workbook

Finds the sheet index for a particular external sheet number.

getSheetName(int) - Method in class loci.poi.hssf.model.Workbook

gets the name for a given sheet.

getSheetname() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the sheetname for this sheet.

getSheetName() - Method in class loci.poi.hssf.usermodel.HSSFName

Get the sheets name which this named range is referenced to

getSheetName(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

get the sheet name

getSheetName() - Method in class loci.poi.hssf.util.CellReference
 
getSheetName() - Method in class loci.poi.hssf.util.RangeAddress
 
getSheetName(int) - Method in class loci.poi.hssf.util.SheetReferences
 
getSheetnameLength() - Method in class loci.poi.hssf.record.BoundSheetRecord

get the length of the sheetname in characters

getSheetReferences() - Method in class loci.poi.hssf.model.Workbook
 
getShort(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short value from a byte array

getShort(byte[]) - Static method in class loci.poi.util.LittleEndian

get a short value from the beginning of a byte array

getShortArray(byte[], int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getShortDescription() - Method in interface loci.poi.poifs.dev.POIFSViewable

Provides a short description of the object, to be used when a
 POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Provides a short description of the object, to be used when a
 POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.DocumentNode

Provides a short description of the object, to be used when a
 POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Provides a short description of the object, to be used when a
 POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Provides a short description of the object, to be used when a
 POIFSViewable object has not provided its contents.

getShortDescription() - Method in class loci.poi.poifs.property.Property

Provides a short description of the object, to be used when a
 POIFSViewable object has not provided its contents.

getShortElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its short value from an IIOMetadataNode.

getShortRawValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, unshifted

getShorts(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShorts(WritableRaster, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Extracts pixel data as arrays of unsigned shorts, one per channel.

getShortValue(short) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, appropriately
 shifted right, as a short.

getShowMetadataInfo() - Method in class loci.plugins.in.ImporterOptions
 
getShowOMEXMLInfo() - Method in class loci.plugins.in.ImporterOptions
 
getShowROIsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getShrinkToFit() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to shrink the text to fit

getSid() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
 
getSid() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

It's an aggregate...

getSid() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.AreaFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.AreaRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisOptionsRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisParentRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisRecord
 
getSid() - Method in class loci.poi.hssf.record.AxisUsedRecord
 
getSid() - Method in class loci.poi.hssf.record.BackupRecord
 
getSid() - Method in class loci.poi.hssf.record.BarRecord
 
getSid() - Method in class loci.poi.hssf.record.BeginRecord
 
getSid() - Method in class loci.poi.hssf.record.BlankRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.BOFRecord
 
getSid() - Method in class loci.poi.hssf.record.BookBoolRecord
 
getSid() - Method in class loci.poi.hssf.record.BoolErrRecord
 
getSid() - Method in class loci.poi.hssf.record.BottomMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.BoundSheetRecord
 
getSid() - Method in class loci.poi.hssf.record.CalcCountRecord
 
getSid() - Method in class loci.poi.hssf.record.CalcModeRecord
 
getSid() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
 
getSid() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.ChartRecord
 
getSid() - Method in class loci.poi.hssf.record.CodepageRecord
 
getSid() - Method in class loci.poi.hssf.record.ColumnInfoRecord
 
getSid() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
getSid() - Method in class loci.poi.hssf.record.ContinueRecord
 
getSid() - Method in class loci.poi.hssf.record.CountryRecord
 
getSid() - Method in class loci.poi.hssf.record.DataFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.DateWindow1904Record
 
getSid() - Method in class loci.poi.hssf.record.DatRecord
 
getSid() - Method in class loci.poi.hssf.record.DBCellRecord
 
getSid() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
 
getSid() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
 
getSid() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
 
getSid() - Method in class loci.poi.hssf.record.DeltaRecord
 
getSid() - Method in class loci.poi.hssf.record.DimensionsRecord
 
getSid() - Method in class loci.poi.hssf.record.DrawingGroupRecord
 
getSid() - Method in class loci.poi.hssf.record.DrawingRecord
 
getSid() - Method in class loci.poi.hssf.record.DrawingRecordForBiffViewer
 
getSid() - Method in class loci.poi.hssf.record.DrawingSelectionRecord
 
getSid() - Method in class loci.poi.hssf.record.DSFRecord
 
getSid() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord
 
getSid() - Method in class loci.poi.hssf.record.EndRecord
 
getSid() - Method in class loci.poi.hssf.record.EndSubRecord
 
getSid() - Method in class loci.poi.hssf.record.EOFRecord
 
getSid() - Method in class loci.poi.hssf.record.EscherAggregate
 
getSid() - Method in class loci.poi.hssf.record.ExtendedFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.ExternSheetRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExternSheetSubRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getSid() - Method in class loci.poi.hssf.record.ExtSSTRecord
 
getSid() - Method in class loci.poi.hssf.record.FilePassRecord
 
getSid() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getSid() - Method in class loci.poi.hssf.record.FnGroupCountRecord
 
getSid() - Method in class loci.poi.hssf.record.FontBasisRecord
 
getSid() - Method in class loci.poi.hssf.record.FontIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.FontRecord
 
getSid() - Method in class loci.poi.hssf.record.FooterRecord
 
getSid() - Method in class loci.poi.hssf.record.FormatRecord
 
getSid() - Method in class loci.poi.hssf.record.FormulaRecord
 
getSid() - Method in class loci.poi.hssf.record.FrameRecord
 
getSid() - Method in class loci.poi.hssf.record.GridsetRecord
 
getSid() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
 
getSid() - Method in class loci.poi.hssf.record.GutsRecord
 
getSid() - Method in class loci.poi.hssf.record.HCenterRecord
 
getSid() - Method in class loci.poi.hssf.record.HeaderRecord
 
getSid() - Method in class loci.poi.hssf.record.HideObjRecord
 
getSid() - Method in class loci.poi.hssf.record.HorizontalPageBreakRecord
 
getSid() - Method in class loci.poi.hssf.record.IndexRecord
 
getSid() - Method in class loci.poi.hssf.record.InterfaceEndRecord
 
getSid() - Method in class loci.poi.hssf.record.InterfaceHdrRecord
 
getSid() - Method in class loci.poi.hssf.record.IterationRecord
 
getSid() - Method in class loci.poi.hssf.record.LabelRecord
 
getSid() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
getSid() - Method in class loci.poi.hssf.record.LeftMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.LegendRecord
 
getSid() - Method in class loci.poi.hssf.record.LineFormatRecord
 
getSid() - Method in class loci.poi.hssf.record.LinkedDataRecord
 
getSid() - Method in class loci.poi.hssf.record.MergeCellsRecord
 
getSid() - Method in class loci.poi.hssf.record.MMSRecord
 
getSid() - Method in class loci.poi.hssf.record.MulBlankRecord
 
getSid() - Method in class loci.poi.hssf.record.MulRKRecord
 
getSid() - Method in class loci.poi.hssf.record.NameRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.NoteRecord
 
getSid() - Method in class loci.poi.hssf.record.NoteStructureSubRecord
 
getSid() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.NumberRecord
 
getSid() - Method in class loci.poi.hssf.record.ObjectLinkRecord
 
getSid() - Method in class loci.poi.hssf.record.ObjectProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.ObjRecord
 
getSid() - Method in class loci.poi.hssf.record.PageBreakRecord
 
getSid() - Method in class loci.poi.hssf.record.PaletteRecord
 
getSid() - Method in class loci.poi.hssf.record.PaneRecord
 
getSid() - Method in class loci.poi.hssf.record.PasswordRecord
 
getSid() - Method in class loci.poi.hssf.record.PasswordRev4Record
 
getSid() - Method in class loci.poi.hssf.record.PlotAreaRecord
 
getSid() - Method in class loci.poi.hssf.record.PlotGrowthRecord
 
getSid() - Method in class loci.poi.hssf.record.PrecisionRecord
 
getSid() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
 
getSid() - Method in class loci.poi.hssf.record.PrintHeadersRecord
 
getSid() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getSid() - Method in class loci.poi.hssf.record.ProtectionRev4Record
 
getSid() - Method in class loci.poi.hssf.record.ProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.RecalcIdRecord
 
getSid() - Method in class loci.poi.hssf.record.Record

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.RecordInputStream
 
getSid() - Method in class loci.poi.hssf.record.RefModeRecord
 
getSid() - Method in class loci.poi.hssf.record.RefreshAllRecord
 
getSid() - Method in class loci.poi.hssf.record.RightMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.RKRecord
 
getSid() - Method in class loci.poi.hssf.record.RowRecord
 
getSid() - Method in class loci.poi.hssf.record.SaveRecalcRecord
 
getSid() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.SCLRecord
 
getSid() - Method in class loci.poi.hssf.record.SelectionRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesIndexRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesListRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesTextRecord
 
getSid() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
 
getSid() - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
getSid() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
 
getSid() - Method in class loci.poi.hssf.record.SSTRecord
 
getSid() - Method in class loci.poi.hssf.record.StringRecord

return the non static version of the id for this record.

getSid() - Method in class loci.poi.hssf.record.StyleRecord
 
getSid() - Method in class loci.poi.hssf.record.SupBookRecord
 
getSid() - Method in class loci.poi.hssf.record.TabIdRecord
 
getSid() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getSid() - Method in class loci.poi.hssf.record.TextRecord
 
getSid() - Method in class loci.poi.hssf.record.TickRecord
 
getSid() - Method in class loci.poi.hssf.record.TopMarginRecord
 
getSid() - Method in class loci.poi.hssf.record.UnicodeString
 
getSid() - Method in class loci.poi.hssf.record.UnitsRecord
 
getSid() - Method in class loci.poi.hssf.record.UnknownRecord
 
getSid() - Method in class loci.poi.hssf.record.UseSelFSRecord
 
getSid() - Method in class loci.poi.hssf.record.ValueRangeRecord
 
getSid() - Method in class loci.poi.hssf.record.VCenterRecord
 
getSid() - Method in class loci.poi.hssf.record.VerticalPageBreakRecord
 
getSid() - Method in class loci.poi.hssf.record.WindowOneRecord
 
getSid() - Method in class loci.poi.hssf.record.WindowProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.WindowTwoRecord
 
getSid() - Method in class loci.poi.hssf.record.WriteAccessRecord
 
getSid() - Method in class loci.poi.hssf.record.WriteProtectRecord
 
getSid() - Method in class loci.poi.hssf.record.WSBoolRecord
 
getSignificantBits() - Method in class ome.xml.model.Pixels
 
getSimpleShortArray(byte[], int, int) - Static method in class loci.poi.util.LittleEndian

get a short array from a byte array.

getSingleSection() - Method in class loci.poi.hpsf.PropertySet

If the PropertySet has only a single section this
 method returns it.

getSize(int) - Static method in class jj2000.j2k.image.DataBlk

Returns the size in bits, given the data type.

getSize() - Method in class jj2000.j2k.util.ThreadPool

Returns the size of the pool.

getSize(Image) - Static method in class loci.formats.gui.AWTImageTools

Gets the width and height of the given AWT image,
 waiting for it to finish loading if necessary.

getSize() - Method in class loci.plugins.util.BFVirtualStack
 
getSize() - Method in class loci.poi.ddf.EscherBSERecord

Blip size in stream.

getSize() - Method in class loci.poi.hpsf.MutableSection

Returns the section's size.

getSize() - Method in class loci.poi.hpsf.Property

Returns the property's size in bytes.

getSize() - Method in class loci.poi.hpsf.Section

Returns the section's size in bytes.

getSize() - Method in class loci.poi.hssf.model.Sheet
 
getSize() - Method in class loci.poi.hssf.model.Workbook
 
getSize() - Method in interface loci.poi.hssf.record.CustomField
 
getSize() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ArrayPtg

This size includes the size of the array Ptg plus the Array Ptg Token value size

getSize() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.BoolPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ConcatPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.DividePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.EqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ErrPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ExpPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.FuncPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.IntPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the size of the sid

getSize() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NamePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NameXPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.NumberPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.PowerPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.Ptg
 
getSize() - Method in class loci.poi.hssf.record.formula.RangePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
getSize() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.StringPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.SubtractPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnionPtg
 
getSize() - Method in class loci.poi.hssf.record.formula.UnknownPtg
 
getSize() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
 
getSize() - Method in interface loci.poi.poifs.filesystem.DocumentEntry

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.DocumentNode

get the zize of the document, in bytes

getSize() - Method in class loci.poi.poifs.filesystem.POIFSDocument
 
getSize() - Method in class loci.poi.poifs.property.Property

find out the document size

getSize() - Method in class ome.xml.model.BinaryFile
 
getSizeC() - Method in class loci.formats.ChannelFiller
 
getSizeC() - Method in class loci.formats.DimensionSwapper
 
getSizeC() - Method in class loci.formats.FileStitcher
 
getSizeC() - Method in class loci.formats.FormatReader
 
getSizeC() - Method in interface loci.formats.IFormatReader

Gets the size of the C dimension.

getSizeC() - Method in class loci.formats.ImageReader
 
getSizeC() - Method in class loci.formats.ReaderWrapper
 
getSizeC() - Method in interface loci.formats.services.WlzService

Gets number of channels.

getSizeC() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeC(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeC() - Method in class loci.tests.testng.Configuration
 
getSizeC() - Method in class ome.xml.model.Pixels
 
getSizeEMU() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getSizeEMU() - Method in class loci.poi.ddf.EscherPictBlip
 
getSizeOfElements() - Method in class loci.poi.ddf.EscherArrayProperty
 
getSizeOfType(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the number of bytes used to store a value of the given
 data type.

getSizeT() - Method in class loci.formats.DimensionSwapper
 
getSizeT() - Method in class loci.formats.FileStitcher
 
getSizeT() - Method in class loci.formats.FormatReader
 
getSizeT() - Method in interface loci.formats.IFormatReader

Gets the size of the T dimension.

getSizeT() - Method in class loci.formats.ImageReader
 
getSizeT() - Method in class loci.formats.ReaderWrapper
 
getSizeT() - Method in interface loci.formats.services.WlzService

Gets number of time samples.

getSizeT() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeT(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeT() - Method in class loci.tests.testng.Configuration
 
getSizeT() - Method in class ome.xml.model.Pixels
 
getSizeX() - Method in class loci.formats.DimensionSwapper
 
getSizeX() - Method in class loci.formats.FileStitcher
 
getSizeX() - Method in class loci.formats.FormatReader
 
getSizeX() - Method in interface loci.formats.IFormatReader

Gets the size of the X dimension.

getSizeX() - Method in class loci.formats.ImageReader
 
getSizeX() - Method in class loci.formats.ReaderWrapper
 
getSizeX() - Method in interface loci.formats.services.WlzService

Gets width in pixels/voxels.

getSizeX() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeX() - Method in class loci.formats.TileStitcher
 
getSizeX(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeX() - Method in class loci.tests.testng.Configuration
 
getSizeX() - Method in class ome.xml.model.Pixels
 
getSizeY() - Method in class loci.formats.DimensionSwapper
 
getSizeY() - Method in class loci.formats.FileStitcher
 
getSizeY() - Method in class loci.formats.FormatReader
 
getSizeY() - Method in interface loci.formats.IFormatReader

Gets the size of the Y dimension.

getSizeY() - Method in class loci.formats.ImageReader
 
getSizeY() - Method in class loci.formats.ReaderWrapper
 
getSizeY() - Method in interface loci.formats.services.WlzService

Gets height in pixels/voxels.

getSizeY() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeY() - Method in class loci.formats.TileStitcher
 
getSizeY(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeY() - Method in class loci.tests.testng.Configuration
 
getSizeY() - Method in class ome.xml.model.Pixels
 
getSizeZ() - Method in class loci.formats.DimensionSwapper
 
getSizeZ() - Method in class loci.formats.FileStitcher
 
getSizeZ() - Method in class loci.formats.FormatReader
 
getSizeZ() - Method in interface loci.formats.IFormatReader

Gets the size of the Z dimension.

getSizeZ() - Method in class loci.formats.ImageReader
 
getSizeZ() - Method in class loci.formats.ReaderWrapper
 
getSizeZ() - Method in interface loci.formats.services.WlzService

Gets depth (number of x-y planes) in voxels.

getSizeZ() - Method in class loci.formats.services.WlzServiceImpl
 
getSizeZ(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getSizeZ() - Method in class loci.tests.testng.Configuration
 
getSizeZ() - Method in class ome.xml.model.Pixels
 
getSlideCount() - Method in class loci.poi.hpsf.DocumentSummaryInformation

Returns the slide count or 0 if the DocumentSummaryInformation does not contain a slide count.

getSmallBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument

return the array of SmallDocumentBlocks used

getSmallDocumentBlocks(RawDataBlockList, RootProperty, int) - Static method in class loci.poi.poifs.storage.SmallBlockTableReader

fetch the small document block list from an existing file

getSnapshotPixels() - Method in class loci.plugins.util.RecordedImageProcessor
 
getSOP() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets SOP.

getSOP() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets SOP

getSort() - Method in class mdbtools.dbengine.sql.OrderBy
 
getSource() - Method in class loci.formats.cache.Cache

Gets the cache's caching source.

getSource() - Method in class loci.formats.cache.CacheEvent

Gets the source of the cache update.

getSources() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
 
getSources() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getSpacing() - Method in class loci.poi.hssf.record.LegendRecord

Get the spacing field for the Legend record.

getSpContainer() - Method in class loci.poi.hssf.model.AbstractShape
 
getSpContainer() - Method in class loci.poi.hssf.model.LineShape
 
getSpContainer() - Method in class loci.poi.hssf.model.PictureShape
 
getSpContainer() - Method in class loci.poi.hssf.model.PolygonShape
 
getSpContainer() - Method in class loci.poi.hssf.model.SimpleFilledShape
 
getSpContainer() - Method in class loci.poi.hssf.model.TextboxShape
 
getSpec(int, int) - Method in class jj2000.j2k.ModuleSpec

Gets value of specified tile-component without knowing if a
 specific tile-component value has been previously entered.

getSpecificationTitle() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return the Specification Title string for the package.

getSpecificBuiltinRecord(byte, int) - Method in class loci.poi.hssf.model.Workbook

Retrieves the Builtin NameRecord that matches the name and index
 There shouldn't be too many names to make the sequential search too slow

getSpecified() - Method in class jj2000.j2k.roi.MaxShiftSpec
 
getSpecified() - Method in class jj2000.j2k.StringSpec
 
getSpecifyRangesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSpecValType(int, int) - Method in class jj2000.j2k.ModuleSpec

Return the spec type of the given tile-component.

getSpeeds() - Method in class loci.formats.in.ND2Handler
 
getSplitChannelsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSplitFocalPlanesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSplitTimepointsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSSTIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord

get the index to the string in the SSTRecord

getSSTString(int) - Method in class loci.poi.hssf.model.Workbook

given an index into the SST table, this function returns the corresponding String value

getSSTString(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Deprecated.
Do not call this method from your applications. Use the methods
  available in the HSSFRow to get string HSSFCells


getStackFormat() - Method in class loci.plugins.in.ImporterOptions
 
getStackFormatInfo() - Method in class loci.plugins.in.ImporterOptions
 
getStackFormats() - Method in class loci.plugins.in.ImporterOptions
 
getStackOrder() - Method in class loci.plugins.in.ImporterOptions
 
getStackOrder() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getStackOrderInfo() - Method in class loci.plugins.in.ImporterOptions
 
getStackOrders() - Method in class loci.plugins.in.ImporterOptions
 
getStackTrace(Throwable) - Static method in class loci.common.DebugTools

Extracts the given exception's corresponding stack trace to a string.

getStageLabel() - Method in class loci.formats.in.MetamorphHandler
 
getStageLabel() - Method in class ome.xml.model.Image
 
getStageLabelName(int) - Method in class ome.xml.meta.AggregateMetadata
 
getStageLabelName(int) - Method in class ome.xml.meta.DummyMetadata
 
getStageLabelName(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getStageLabelName(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getStageLabelX(int) - Method in class ome.xml.meta.AggregateMetadata
 
getStageLabelX(int) - Method in class ome.xml.meta.DummyMetadata
 
getStageLabelX(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getStageLabelX(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getStageLabelY(int) - Method in class ome.xml.meta.AggregateMetadata
 
getStageLabelY(int) - Method in class ome.xml.meta.DummyMetadata
 
getStageLabelY(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getStageLabelY(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getStageLabelZ(int) - Method in class ome.xml.meta.AggregateMetadata
 
getStageLabelZ(int) - Method in class ome.xml.meta.DummyMetadata
 
getStageLabelZ(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getStageLabelZ(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getStagePositionX() - Method in class loci.formats.in.MetamorphHandler
 
getStagePositionY() - Method in class loci.formats.in.MetamorphHandler
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardChromaNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardCompressionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardDataNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardDimensionNode() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
getStandardDocumentNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getStandardTextNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
getStandardTransparencyNode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getStartBlock() - Method in class loci.poi.poifs.property.Property
 
getStartBlock() - Method in class loci.poi.poifs.property.PropertyTable

Get the start block for the property table

getStartBlock() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter

get the starting block

getStartLevelROI() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets startLevel

getStartPos() - Method in class com.sun.media.imageio.stream.StreamSegment

Returns the starting position of the segment.

getStartRowNumberForBlock(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate

Returns the physical row number of the first row in a block

getStartTime() - Method in class ome.xml.model.PlateAcquisition
 
getStatistics(int, int, double, double) - Method in class loci.plugins.util.VirtualImagePlus
 
getStatus() - Method in class ome.xml.model.Plate
 
getStatusBarLength() - Method in class loci.poi.hssf.record.NameRecord

get the status bar text length

getStatusBarText() - Method in class loci.poi.hssf.record.NameRecord

gets the status bar text

getStatusMessage() - Method in class loci.common.StatusEvent

Gets status message.

getStep() - Method in class loci.formats.FilePattern
 
getStep() - Method in class loci.formats.FilePatternBlock
 
getStep(int) - Static method in enum loci.plugins.in.ImportStep
 
getStep() - Method in enum loci.plugins.in.ImportStep
 
getStitchTilesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getStorageClsid() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Gets the storage clsid of the directory entry

getStorageClsid() - Method in class loci.poi.poifs.property.Property

Sets the storage clsid, which is the Class ID of a COM object which
   reads and writes this stream

getStr() - Method in class loci.poi.hssf.record.TextObjectRecord
 
getStrategy() - Method in class loci.formats.cache.Cache

Gets the cache's caching strategy.

getStream() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the ImageOutputStream that will be written.

getStream() - Method in class loci.formats.tiff.TiffParser

Gets the stream from which TIFF data is being parsed.

getStream() - Method in class loci.formats.tiff.TiffSaver

Gets the stream from which TIFF data is being saved.

getStream() - Method in class loci.poi.poifs.eventfilesystem.POIFSReaderEvent
 
getStream() - Method in class loci.poi.poifs.filesystem.POIFSWriterEvent
 
getStreamId() - Method in class loci.poi.hssf.record.EmbeddedObjectRefSubRecord

Gets the stream ID containing the actual data.

getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getStreamMetadata(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getStreamMetadata() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getStreamPos() - Method in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
getStreamPosition() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
getStreams() - Method in class loci.formats.tools.AmiraParameters
 
getStreamSegment(long, int) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Returns a StreamSegment object indicating the
 location of the initial portion of a desired segment in the
 source stream.

getStreamSegment(long, int, StreamSegment) - Method in interface com.sun.media.imageio.stream.StreamSegmentMapper

Sets the values of a StreamSegment object
 indicating the location of the initial portion of a desired
 segment in the source stream.

getStrikeout() - Method in class loci.poi.hssf.usermodel.HSSFFont

get whether to use a strikeout horizontal line through the text or not

getString(String, String) - Static method in class com.sun.media.imageioimpl.common.I18NImpl

Returns the message string with the specified key from the
 "properties" file in the package containing the class with
 the specified name.

getString(int) - Method in class loci.poi.hssf.record.SSTRecord

Get a particular string by its index

getString() - Method in class loci.poi.hssf.record.StringRecord
 
getString() - Method in class loci.poi.hssf.record.UnicodeString

get the actual string this contains as a java String object

getString() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString

Returns the plain string representation.

getString() - Method in class loci.poi.hssf.usermodel.HSSFTextbox
 
getStringCellValue() - Method in class loci.poi.hssf.usermodel.HSSFCell

Deprecated.
Use the HSSFRichTextString return


getStringElementValue(Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Gets its String value from an IIOMetadataNode.

getStringLength() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getStringLength() - Method in class loci.poi.hssf.record.LabelRecord

get the number of characters this string contains

getStringOption(String) - Method in class loci.plugins.prefs.OptionsList

Gets the string option with the given key.

getStringRecord() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getStringValue() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getStringWidth(String) - Method in class loci.plugins.util.RecordedImageProcessor
 
getStringWidth(String) - Method in class loci.poi.hssf.usermodel.FontDetails

Gets the width of all characters in a string.

getStripByteCounts() - Method in class loci.formats.tiff.IFD

Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from
 this IFD.

getStripOffsets() - Method in class loci.formats.tiff.IFD

Retrieves the strip offsets for the image (TIFF tag StripOffsets) from
 this IFD.

getStripOrTileByteCountsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getStripOrTileOffsetsPosition() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getStroke() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getStroke() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getStrokeColor() - Method in class ome.xml.model.Shape
 
getStrokeDashArray() - Method in class ome.xml.model.Shape
 
getStrokeWidth() - Method in class ome.xml.model.Shape
 
getStructuredAnnotations() - Method in class ome.xml.model.BooleanAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.CommentAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.DoubleAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.FileAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.ListAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.LongAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.OME
 
getStructuredAnnotations() - Method in class ome.xml.model.TagAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.TermAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.TimestampAnnotation
 
getStructuredAnnotations() - Method in class ome.xml.model.XMLAnnotation
 
getStylesheet(String, Class<?>) - Static method in class loci.common.xml.XMLTools

Gets an XSLT template from the given resource location.

getSubband(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a reference to the Subband element to which the specified point
 belongs.

getSubbandByIdx(int, int) - Method in class jj2000.j2k.wavelet.Subband

Returns a subband element in the tree, given its resolution level and
 subband index.

getSubbandRectROIMask(int, int) - Method in class jj2000.j2k.roi.encoder.SubbandROIMask

Returns a reference to the Subband mask element to which the specified
 point belongs.

getSubexpressionLength() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
 
getSubimage(BufferedImage, boolean, int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools

Returns a subimage of the specified image.

getSubimage(byte[], byte[], int, int, int, int, int, int, int, int, boolean) - Static method in class loci.formats.ImageTools
 
getSubject() - Method in class loci.poi.hpsf.SummaryInformation

Returns the subject (or null).

getSubRecords() - Method in class loci.poi.hssf.record.ObjRecord
 
getSuffix() - Method in class loci.formats.FilePattern

Gets the pattern's text string after all numerical ranges.

getSuffixes() - Method in class loci.formats.FormatHandler
 
getSuffixes() - Method in interface loci.formats.IFormatHandler

Gets the default file suffixes for this file format.

getSuffixes() - Method in class loci.formats.ImageReader
 
getSuffixes() - Method in class loci.formats.ImageWriter
 
getSuffixes() - Method in class loci.formats.ReaderWrapper
 
getSuffixes() - Method in class loci.formats.WriterWrapper
 
getSummaryInformation() - Method in class loci.poi.POIDocument

Fetch the Summary Information of the document

getSummaryInformationProperties() - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap
 
getSupbookpos() - Method in class loci.poi.hssf.model.WorkbookRecordList

Returns the supbookpos.

getSuperSubScript() - Method in class loci.poi.hssf.record.FontRecord

get the type of super or subscript for the font

getSupPixelTypes() - Method in interface loci.formats.services.WlzService

Gets supported pixel types.

getSupPixelTypes() - Method in class loci.formats.services.WlzServiceImpl
 
getSupportedMetadataLevels() - Method in class loci.formats.DelegateReader
 
getSupportedMetadataLevels() - Method in class loci.formats.FormatReader
 
getSupportedMetadataLevels() - Method in class loci.formats.ImageReader
 
getSupportedMetadataLevels() - Method in interface loci.formats.IMetadataConfigurable
 
getSupportedMetadataLevels() - Method in class loci.formats.ReaderWrapper
 
getSwapDimensionsInfo() - Method in class loci.plugins.in.ImporterOptions
 
getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis
 filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the high-pass synthesis filter.

getSynHighNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the high-pass synthesis
 filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis
 filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the high-pass synthesis filter.

getSynHighPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the high-pass synthesis
 filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis
 filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the negative support of the low-pass synthesis filter.

getSynLowNegSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the negative support of the low-pass synthesis
 filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis
 filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the positive support of the low-pass synthesis filter.

getSynLowPosSupport() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the positive support of the low-pass synthesis
 filter.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.entropy.decoder.EntropyDecoder

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.roi.ROIDeScaler

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the specified synthesis subband tree

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWTData

Returns the subband tree, for the specified tile-component.

getSynSubbandTree(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the specified synthesis subband tree

getT() - Method in class loci.formats.gui.ImageViewer

Gets the T value of the currently displayed image.

getTabIdArray() - Method in class loci.poi.hssf.record.TabIdRecord

get the tab array.

getTable(String) - Method in class loci.common.IniList

Gets the table with the given name (header).

getTable(int) - Method in interface mdbtools.dbengine.DataSource
 
getTable() - Method in class mdbtools.dbengine.sql.FQColumn
 
getTable(int) - Method in class mdbtools.dbengine.sql.Select
 
getTableCount() - Method in interface loci.formats.services.MetakitService
 
getTableCount() - Method in class loci.formats.services.MetakitServiceImpl
 
getTableCount() - Method in interface mdbtools.dbengine.DataSource
 
getTableCount() - Method in class mdbtools.dbengine.sql.Select
 
getTableCount() - Method in class ome.metakit.MetakitReader

Retrieve the number of tables in this database file.

getTableData(String) - Method in interface loci.formats.services.MetakitService
 
getTableData(int) - Method in interface loci.formats.services.MetakitService
 
getTableData(String) - Method in class loci.formats.services.MetakitServiceImpl
 
getTableData(int) - Method in class loci.formats.services.MetakitServiceImpl
 
getTableData(int) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the table with the given index.

getTableData(String) - Method in class ome.metakit.MetakitReader

Retrieve all of the tabular data for the named table.

getTableNames() - Method in interface loci.formats.services.MetakitService
 
getTableNames() - Method in class loci.formats.services.MetakitServiceImpl
 
getTableNames() - Method in class ome.metakit.MetakitReader

Retrieve the name of every table in this database file.

getTabpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getTabWidthRatio() - Method in class loci.poi.hssf.record.WindowOneRecord

ratio of the width of the tabs to the horizontal scrollbar

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTag which has tag number equal to
 tagNumber or null if no such tag
 exists in the TIFFTagSets associated with this
 directory.

getTag() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag associated with this field.

getTag(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag from this set that is
 associated with the given tag number, or null if
 no tag exists for that number.

getTag(String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Returns the TIFFTag having the given tag name, or
 null if the named tag does not belong to this tag set.

getTag(int, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getTag(String, List) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getTag() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's Tag value.

getTag() - Method in class loci.poi.ddf.EscherBSERecord

unused

getTagAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTagAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getTagAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTagAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTagNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable lexicographically increasing set of tag names.

getTagNumber() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Retrieves the tag number in the range [0, 65535].

getTagNumbers() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTagSet

Retrieves an unmodifiable numerically increasing set of tag numbers.

getTagSet() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the TIFFTagSet of which this tag is a part.

getTagSetList() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
getTagSets() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Returns the TIFFTagSets of which this directory is aware.

getTargetBitrate(int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the target bitrate of the optmimization point 'n'.

getTargetNbytes() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target number of read bytes.

getTargetRate() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Return the target decoding rate in bits per pixel.

getTBegin(int) - Method in class loci.plugins.in.ImporterOptions
 
getTBegin(int) - Method in class loci.plugins.in.ImportProcess
 
getTCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getTemperature() - Method in class loci.formats.in.MetamorphHandler
 
getTemperature() - Method in class ome.xml.model.ImagingEnvironment
 
getTemperatures() - Method in class loci.formats.in.ND2Handler
 
getTemplate() - Method in class loci.poi.hpsf.SummaryInformation

Returns the template (or null).

getTEnd(int) - Method in class loci.plugins.in.ImporterOptions
 
getTEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getTermAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTermAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTermAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTermAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTermAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTermAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTermAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getTermAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTermAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTerminateOnByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Gets terminateOnByte

getText() - Method in class loci.poi.hssf.extractor.ExcelExtractor

Retreives the text contents of the file

getText() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text field for the SeriesText record.

getText() - Method in class loci.poi.POITextExtractor

Retrieves all the text from the document.

getText() - Method in class ome.xml.model.Shape
 
getTextFooter() - Static method in class loci.formats.tools.PrintFormatTable
 
getTextFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getTextHeader() - Static method in class loci.formats.tools.PrintFormatTable
 
getTextLength() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the text length field for the SeriesText record.

getTextLength() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text length field for the TextObjectBase record.

getTextObjectRecord() - Method in class loci.poi.hssf.model.TextboxShape
 
getTextOrientation() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Get the text orientation field for the TextObjectBase record.

getTextRotation() - Method in class loci.poi.hssf.record.TextRecord

Get the text rotation field for the Text record.

getTextsLength() - Method in class loci.poi.hssf.record.NameRecord

gets the length of all texts

getTFrames(int) - Method in class loci.formats.in.LegacyND2Reader
 
getTheC() - Method in class ome.xml.model.Plane
 
getTheC() - Method in class ome.xml.model.Shape
 
getTheT() - Method in class ome.xml.model.Plane
 
getTheT() - Method in class ome.xml.model.Shape
 
getTheZ() - Method in class ome.xml.model.Plane
 
getTheZ() - Method in class ome.xml.model.Shape
 
getThreadConcurrency() - Static method in class jj2000.j2k.util.NativeServices

Returns the current concurrency level.

getThumbnail() - Method in class loci.poi.hpsf.SummaryInformation

Returns the thumbnail (or null) when this
 method is implemented.


getThumbnail() - Method in class loci.poi.hpsf.Thumbnail

Returns the thumbnail as a byte[] in VT_CF format.

getThumbnailAsWMF() - Method in class loci.poi.hpsf.Thumbnail

Returns the Thumbnail as a byte[] of WMF data
 if the Thumbnail's Clipboard Format Tag is CFTAG_WINDOWS and its Clipboard Format is
 CF_METAFILEPICT

getThumbnailIFDs() - Method in class loci.formats.in.MinimalTiffReader

Gets the list of IFDs associated with the current TIFF's thumbnails.

getThumbnailIFDs() - Method in class loci.formats.tiff.TiffParser

Returns thumbnail IFDs.

getThumbSizeX() - Method in class loci.formats.FileStitcher
 
getThumbSizeX() - Method in class loci.formats.FormatReader
 
getThumbSizeX() - Method in interface loci.formats.IFormatReader

Get the size of the X dimension for the thumbnail.

getThumbSizeX() - Method in class loci.formats.ImageReader
 
getThumbSizeX() - Method in class loci.formats.in.LeicaSCNReader
 
getThumbSizeX() - Method in class loci.formats.in.MinimalTiffReader
 
getThumbSizeX() - Method in class loci.formats.ReaderWrapper
 
getThumbSizeX() - Method in class loci.tests.testng.Configuration
 
getThumbSizeY() - Method in class loci.formats.FileStitcher
 
getThumbSizeY() - Method in class loci.formats.FormatReader
 
getThumbSizeY() - Method in interface loci.formats.IFormatReader

Get the size of the Y dimension for the thumbnail.

getThumbSizeY() - Method in class loci.formats.ImageReader
 
getThumbSizeY() - Method in class loci.formats.in.LeicaSCNReader
 
getThumbSizeY() - Method in class loci.formats.in.MinimalTiffReader
 
getThumbSizeY() - Method in class loci.formats.ReaderWrapper
 
getThumbSizeY() - Method in class loci.tests.testng.Configuration
 
getTickColor() - Method in class loci.poi.hssf.record.TickRecord

Get the tick color field for the Tick record.

getTickMarkFrequency() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

Get the tick mark frequency field for the CategorySeriesAxis record.

getTIFFCompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam

Returns the TIFFCompressor that is currently set
 to be used by the ImageWriter to encode each image
 strip or tile, or null if none has been set.

getTiffData(int) - Method in class ome.xml.model.Pixels
 
getTiffDataCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTiffDataCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getTiffDataCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTiffDataCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTiffDataFirstC(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTiffDataFirstC(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTiffDataFirstC(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTiffDataFirstC(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTiffDataFirstT(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTiffDataFirstT(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTiffDataFirstT(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTiffDataFirstT(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTiffDataFirstZ(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTiffDataFirstZ(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTiffDataIFD(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTiffDataIFD(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTiffDataIFD(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTiffDataIFD(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTiffDataPlaneCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTiffDataPlaneCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTIFFDecompressor() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam

Returns the TIFFDecompressor that is currently set
 to be used by the ImageReader to decode each image
 strip or tile, or null if none has been set.

getTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Retrieves a TIFF field from the directory.

getTIFFField(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
getTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory

Retrieves all TIFF fields from the directory.

getTile(int, int) - Method in class com.sun.media.imageioimpl.common.SingleTileRenderedImage

Returns the image's Raster as tile (0, 0).

getTile(int, int, WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
getTile(Point) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the coordinates of the current tile.

getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
 
getTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTile(Point) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the indexes of the current tile.

getTile(Point) - Method in interface jj2000.j2k.image.ImgData

Returns the indixes of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the coordinates of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.input.ImgReader

Returns the coordinates of the current tile.

getTile(Point) - Method in class jj2000.j2k.image.Tiler

Returns the horizontal and vertical indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the indixes of the current tile.

getTile(Point) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the indexes of the current tile.

getTile(Point) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the indexes of the current tile.

getTile(byte[], int, int, int, int) - Method in interface loci.formats.services.JPEGTurboService
 
getTile(int, int) - Method in interface loci.formats.services.JPEGTurboService
 
getTile(byte[], int, int, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
 
getTile(int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
 
getTile(IFD, byte[], int, int) - Method in class loci.formats.tiff.TiffParser
 
getTileAlternateMD5() - Method in class loci.tests.testng.Configuration
 
getTileCompHeight(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileCompHeight(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the height in pixels of the specified tile-component for the
 given (tile-component) resolution level.

getTileCompHeight(int, int) - Method in interface jj2000.j2k.image.ImgData

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.image.Tiler

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the height in pixels of the specified tile-component.

getTileCompHeight(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the height in pixels of the specified tile-component for the
 given resolution level.

getTileCompHeight(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the height in pixels of the specified tile-component for the
 given resolution level.

getTileCompVal(int, int) - Method in class jj2000.j2k.ModuleSpec

Gets value of specified tile-component.

getTileCompWidth(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileCompWidth(int, int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the width in pixels of the specified tile-component for the
 given (tile-component) resolution level.

getTileCompWidth(int, int) - Method in interface jj2000.j2k.image.ImgData

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the width in pixels of the specified tile-component
 tile.

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.input.ImgReader

Returns the width in pixels of the specified tile-component.

getTileCompWidth(int, int) - Method in class jj2000.j2k.image.Tiler

Returns the width in pixels of the specified tile-component.

getTileCompWidth(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the width in pixels of the specified tile-component

getTileCompWidth(int, int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the width in pixels of the specified tile-component for the
 given resolution level.

getTileCompWidth(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the width in pixels of the specified tile-component for the
 given resolution level.

getTileDef(int) - Method in class jj2000.j2k.ModuleSpec

Gets default value of the specified tile.

getTileGridXOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the X coordinate of the upper-left pixel of tile (0, 0).

getTileGridXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileGridXOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileGridYOffset() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the Y coordinate of the upper-left pixel of tile (0, 0).

getTileGridYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTileGridYOffset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileHeight() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the height of a tile.

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the overall height of the current tile in pixels.

getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getTileHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getTileHeight() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileHeight(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall height of the current tile in pixels, for the given
 resolution level.

getTileHeight() - Method in interface jj2000.j2k.image.ImgData

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.image.input.ImgReader

Returns the overall height of the current tile in pixels, assuming
 there is no-tiling.

getTileHeight() - Method in class jj2000.j2k.image.Tiler

Returns the overall height of the current tile in pixels.

getTileHeight() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall height of the current tile in pixels.

getTileHeight(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall height of the current tile in pixels, for the given
 resolution level.

getTileHeight(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall height of the current tile in pixels, for the given
 resolution level.

getTileIdx() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in interface jj2000.j2k.image.ImgData

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in class jj2000.j2k.image.input.ImgReader

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in class jj2000.j2k.image.Tiler

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileIdx() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the index of the current tile, relative to a standard scan-line
 order.

getTileLength() - Method in class loci.formats.tiff.IFD

Returns the length of an image tile.

getTileMD5() - Method in class loci.tests.testng.Configuration
 
getTileOff(Point, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the horizontal and vertical offset of the upper-left corner of
 the current tile, in the specified component, relative to the canvas
 origin, in the component coordinates (not in the reference grid
 coordinates).

getTilePartULX() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTilePartULX() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the horizontal offset of tile partition

getTilePartULX() - Method in interface jj2000.j2k.image.ImgData

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.input.ImgReader

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.image.Tiler

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the horizontal tile partition offset in the reference grid

getTilePartULX() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the horizontal tile partition offset in the reference grid

getTilePartULY() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
 
getTilePartULY() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the vertical offset of tile partition

getTilePartULY() - Method in interface jj2000.j2k.image.ImgData

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the vertical tile offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.input.ImgReader

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.image.Tiler

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the vertical tile partition offset in the reference grid

getTilePartULY() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the vertical tile partition offset in the reference grid

getTileSize(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
getTilesPerColumn() - Method in class loci.formats.tiff.IFD

Returns the number of image tiles per column.

getTilesPerRow() - Method in class loci.formats.tiff.IFD

Returns the number of image tiles per row.

getTileWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the width of a tile.

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns the width of the current tile in pixels.

getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getTileWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getTileWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getTileWidth(int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Returns the overall width of the current tile in pixels for the given
 (tile) resolution level.

getTileWidth() - Method in interface jj2000.j2k.image.ImgData

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.ImgDataAdapter

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.ImgDataJoiner

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.image.input.ImgReader

Returns the width of the current tile in pixels, assuming there is
 no-tiling.

getTileWidth() - Method in class jj2000.j2k.image.Tiler

Returns the overall width of the current tile in pixels.

getTileWidth() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Returns the overall width of the current tile in pixels.

getTileWidth(int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Returns the overall width of the current tile in pixels for the given
 resolution level.

getTileWidth(int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Returns the overall width of the current tile in pixels, for the given
 resolution level.

getTileWidth() - Method in class loci.formats.tiff.IFD

Returns the width of an image tile.

getTilingOrigin(Point) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns the tiling origin, referred to as '(Px,Py)' in the 'ImgData'
 interface.

getTilingOrigin(Point) - Method in class jj2000.j2k.image.Tiler

Returns the tiling origin, referred to as '(xt0siz,yt0siz)' in the
 codestream header (SIZ marker segment).

getTime(String, String) - Static method in class loci.common.DateTools

Converts a string date in the given format to a long timestamp
 (in Unix format: milliseconds since January 1, 1970).

getTimeBinCount() - Method in class loci.formats.in.SDTReader

Gets the number of bins in the lifetime histogram.

getTimeIncrement() - Method in class loci.tests.testng.Configuration
 
getTimeIncrement() - Method in class ome.xml.model.Pixels
 
getTimepoint() - Method in class ome.xml.model.WellSample
 
getTimepoints() - Method in class loci.formats.in.ND2Handler
 
getTimestamp() - Static method in class loci.common.DateTools

Returns a timestamp for the current timezone in a
 human-readable locale-independent format ("YYYY-MM-DD HH:MM:SS")

getTimestampAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getTimestampAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestampAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestampAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestampAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestampAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestampAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestampAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestampAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getTimestampAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getTimestampAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTimestampAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTimestamps() - Method in class loci.formats.in.MetamorphHandler
 
getTitle() - Method in class loci.poi.hpsf.SummaryInformation

Returns the title (or null).

getToCell() - Method in class loci.poi.hssf.util.RangeAddress
 
getTopBorderColor() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the color to use for the top border

getTopBorderPaletteIdx() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the palette index for the top border

getTopColGutter() - Method in class loci.poi.hssf.record.GutsRecord

get the size of the gutter that appears at the above the columns

getTopRow() - Method in class loci.poi.hssf.model.Sheet
 
getTopRow() - Method in class loci.poi.hssf.record.PaneRecord

Get the top row field for the Pane record.

getTopRow() - Method in class loci.poi.hssf.record.WindowTwoRecord

get the top row visible in the window

getTopRow() - Method in class loci.poi.hssf.usermodel.HSSFSheet

The top row in the visible view when the sheet is 
 first viewed after opening it in a viewer

getTotBitrate() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the overall target bitrate for the entire bit stream.

getTotNumLayers() - Method in class jj2000.j2k.entropy.encoder.LayersInfo

Returns the total number of layers, according to the layer
 specification of this object and the overall target bitrate.

getTransform() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
getTransform() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
getTransform() - Method in class ome.xml.model.Shape
 
getTransmittance() - Method in class ome.xml.model.TransmittanceRange
 
getTransmittanceRange() - Method in class ome.xml.model.Filter
 
getTransmittanceRangeCutIn(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTransmittanceRangeCutIn(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTransmittanceRangeCutIn(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTransmittanceRangeCutIn(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTransmittanceRangeCutInTolerance(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTransmittanceRangeCutInTolerance(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTransmittanceRangeCutInTolerance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTransmittanceRangeCutInTolerance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTransmittanceRangeCutOut(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTransmittanceRangeCutOut(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTransmittanceRangeCutOut(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTransmittanceRangeCutOut(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTransmittanceRangeCutOutTolerance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTransmittanceRangeTransmittance(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getTransmittanceRangeTransmittance(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getTransmittanceRangeTransmittance(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getTransmittanceRangeTransmittance(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class loci.formats.gui.XMLCellRenderer
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AQUA
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLACK
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.BROWN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORAL
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GOLD
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.INDIGO
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.LIME
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.MAROON
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORANGE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ORCHID
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PINK
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.PLUM
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.RED
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROSE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TAN
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TEAL
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.VIOLET
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.WHITE
 
getTriplet() - Method in class loci.poi.hssf.util.HSSFColor.YELLOW
 
getTripletHash() - Static method in class loci.poi.hssf.util.HSSFColor

this function returns all colors in a hastable.

getTStep(int) - Method in class loci.plugins.in.ImporterOptions
 
getTStep(int) - Method in class loci.plugins.in.ImportProcess
 
getTuneable() - Method in class ome.xml.model.Laser
 
getType() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the type of the data stored in the field.

getType() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the box type.

getType() - Method in class loci.formats.cache.CacheEvent

Gets the type of cache update.

getType() - Method in class loci.formats.gui.TwoChannelColorSpace
 
getType() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets the type associated with this Sequence.

getType() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's Type value.

getType() - Method in class loci.poi.ddf.EscherPropertyMetaData
 
getType() - Method in class loci.poi.hpsf.Property

Returns the property's type.

getType() - Method in class loci.poi.hssf.record.BOFRecord

type of object this marks

getType() - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
getType() - Method in class loci.poi.hssf.record.formula.AddPtg
 
getType() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
getType() - Method in class loci.poi.hssf.record.formula.ConcatPtg
 
getType() - Method in class loci.poi.hssf.record.formula.DividePtg
 
getType() - Method in class loci.poi.hssf.record.formula.EqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg

Get the type of PTG for Greater Than

getType() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
 
getType() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.LessThanPtg

Get the type of PTG for Less Than

getType() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
 
getType() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
 
getType() - Method in class loci.poi.hssf.record.formula.OperationPtg
 
getType() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
 
getType() - Method in class loci.poi.hssf.record.formula.PercentPtg
 
getType() - Method in class loci.poi.hssf.record.formula.PowerPtg
 
getType() - Method in class loci.poi.hssf.record.formula.RangePtg
 
getType() - Method in class loci.poi.hssf.record.formula.SubtractPtg
 
getType() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
 
getType() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
 
getType() - Method in class loci.poi.hssf.record.formula.UnionPtg
 
getType() - Method in class loci.poi.hssf.record.LegendRecord

Get the type field for the Legend record.

getType() - Method in class loci.poi.hssf.record.StyleRecord

get the type of the style (builtin or user-defined)

getType() - Method in class mdbtools.dbengine.sql.Join
 
getType() - Method in class ome.metakit.Column

Retrieve the Class corresponding to the column's type.

getType() - Method in class ome.xml.model.Arc
 
getType() - Method in class ome.xml.model.Detector
 
getType() - Method in class ome.xml.model.Experiment
 
getType() - Method in class ome.xml.model.Filament
 
getType() - Method in class ome.xml.model.Filter
 
getType() - Method in class ome.xml.model.Laser
 
getType() - Method in class ome.xml.model.MicrobeamManipulation
 
getType() - Method in class ome.xml.model.Microscope
 
getType() - Method in class ome.xml.model.Pixels
 
getType() - Method in class ome.xml.model.Screen
 
getType() - Method in class ome.xml.model.Well
 
getTypeByName(String) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the data type constant corresponding to the supplied data
 type name.

getTypeByName(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Returns the type String based on the provided name.

getTypeInt(String) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Converts the box type from integer to string.

getTypeName(int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns the name of the supplied data type constant.

getTypeOffset() - Method in class loci.poi.hssf.usermodel.HSSFFont

get normal,super or subscript.

getTypes() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox

Returns the channel types.

getTypeString(int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Converts the box type from integer to string.

getTypeString() - Method in class ome.metakit.Column

Retrieve a string representation of the type.

getUID() - Method in class loci.poi.ddf.EscherBitmapBlip
 
getUid() - Method in class loci.poi.ddf.EscherBSERecord

16 byte MD4 checksum.

getUID() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getUID() - Method in class loci.poi.ddf.EscherPictBlip
 
getUInt(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an unsigned int value from a byte array

getUInt(byte[]) - Static method in class loci.poi.util.LittleEndian

get an unsigned int value from a byte array

getULong(byte[], int) - Static method in class loci.poi.util.LittleEndian

Gets an unsigned int value (8 bytes) from a byte array.

getUncompressedSize() - Method in class loci.poi.ddf.EscherMetafileBlip
 
getUncompressedSize() - Method in class loci.poi.ddf.EscherPictBlip
 
getUnderline() - Method in class loci.poi.hssf.record.FontRecord

get the type of underlining for the font

getUnderline() - Method in class loci.poi.hssf.usermodel.HSSFFont

get type of text underlining to use

getUnderlyingReaders() - Method in class loci.formats.FileStitcher
 
getUnderlyingReaders() - Method in class loci.formats.FormatReader
 
getUnderlyingReaders() - Method in interface loci.formats.IFormatReader

Retrieves all underlying readers.

getUnderlyingReaders() - Method in class loci.formats.ImageReader
 
getUnderlyingReaders() - Method in class loci.formats.ReaderWrapper
 
getUndocumented() - Method in class loci.poi.hssf.record.SeriesTextRecord

Get the undocumented field for the SeriesText record.

getUngroupFilesInfo() - Method in class loci.plugins.in.ImporterOptions
 
getUnicodeFlag() - Method in class loci.poi.hssf.record.FormatRecord

get whether the string is unicode

getUnion() - Method in class ome.xml.model.ROI
 
getUnion() - Method in class ome.xml.model.Shape
 
getUnits() - Method in class loci.poi.hssf.record.UnitsRecord

Get the units field for the Units record.

getUniverse() - Method in class loci.formats.gui.LegacyQTTools

Gets QuickTime for Java reflected universe.

getUnknown() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getUnknownColorspace() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the UnknowColorspace flag.

getUnpackedBinaryData(Raster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns the binary data unpacked into an array of bytes.

getUnsignedByte(byte[], int) - Static method in class loci.poi.util.LittleEndian

get the unsigned value of a byte.

getUnsignedByte(byte[]) - Static method in class loci.poi.util.LittleEndian

get the unsigned value of a byte.

getUnused() - Method in class loci.poi.hssf.record.NameRecord

gets the index to extern sheet

getUnused2() - Method in class loci.poi.ddf.EscherBSERecord
 
getUnused3() - Method in class loci.poi.ddf.EscherBSERecord
 
getUpgradeCheckInfo() - Method in class loci.plugins.in.ImporterOptions
 
getURL() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the URL data element.

getUsage() - Method in class loci.poi.ddf.EscherBSERecord

Defines the way this blip is used.

getUsedFile(Double, String[]) - Method in class loci.plugins.macro.LociFunctions
 
getUsedFileCount(Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getUsedFiles() - Method in class loci.formats.FileStitcher
 
getUsedFiles(boolean) - Method in class loci.formats.FileStitcher
 
getUsedFiles() - Method in class loci.formats.FormatReader
 
getUsedFiles(boolean) - Method in class loci.formats.FormatReader
 
getUsedFiles() - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open this dataset.

getUsedFiles(boolean) - Method in interface loci.formats.IFormatReader

Returns an array of filenames needed to open this dataset.

getUsedFiles() - Method in class loci.formats.ImageReader
 
getUsedFiles(boolean) - Method in class loci.formats.ImageReader
 
getUsedFiles(boolean) - Method in class loci.formats.in.InveonReader
 
getUsedFiles(boolean) - Method in class loci.formats.in.MetamorphTiffReader
 
getUsedFiles(boolean) - Method in class loci.formats.in.UnisokuReader
 
getUsedFiles() - Method in class loci.formats.ReaderWrapper
 
getUsedFiles(boolean) - Method in class loci.formats.ReaderWrapper
 
getUsedMemory() - Static method in class loci.tests.testng.TestTools

Gets the quantity of used memory, in MB.

getUsePage() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getUsePage() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the use page numbers.

getUsername() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getUsername() - Method in class loci.poi.hssf.record.WriteAccessRecord

get the username for the user that created the report.

getUserName() - Method in class ome.xml.model.Experimenter
 
getUsernameLength() - Method in class loci.poi.hssf.record.FileSharingRecord
 
getUShort(byte[], int) - Static method in class loci.poi.util.LittleEndian

get an unsigned short value from a byte array

getUShort(byte[]) - Static method in class loci.poi.util.LittleEndian

get an unsigned short value from the beginning of a byte array

getUUID() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox

Returns the UUID of this box.

getUUID() - Method in class ome.xml.meta.AggregateMetadata

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class ome.xml.meta.DummyMetadata

Gets the UUID associated with this collection of metadata.

getUUID() - Method in interface ome.xml.meta.MetadataRetrieve

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class ome.xml.meta.OMEXMLMetadataImpl

Gets the UUID associated with this collection of metadata.

getUUID() - Method in class ome.xml.model.BinaryOnly
 
getUUID() - Method in class ome.xml.model.OME
 
getUUID() - Method in class ome.xml.model.TiffData
 
getUUIDFileName(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getUUIDFileName(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getUUIDFileName(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getUUIDFileName(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getUUIDValue(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getUUIDValue(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getUUIDValue(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getUUIDValue(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getValidSettings() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getValidSettings() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the valid settings.

getValue(int, int) - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the current value of the specified element in the tag
 tree.

getValue() - Method in class loci.formats.in.BaseZeissReader.Tag
 
getValue(String) - Method in class loci.formats.in.PrairieMetadata.Frame

Gets the value of the given Key, beneath this
 Frame.

getValue() - Method in class loci.plugins.prefs.BooleanOption

Gets the current value of the option.

getValue() - Method in class loci.plugins.prefs.DoubleOption

Gets the current value of the option.

getValue(String) - Method in class loci.plugins.prefs.OptionsList

Gets the value of the string option with the given key.

getValue() - Method in class loci.plugins.prefs.StringOption

Gets the current value of the option.

getValue() - Method in class loci.poi.hpsf.Property

Returns the property's value.

getValue() - Method in exception loci.poi.hpsf.VariantTypeException

Returns the value who's variant type caused the problem.

getValue() - Method in class loci.poi.hssf.record.formula.BoolPtg
 
getValue() - Method in class loci.poi.hssf.record.formula.IntPtg
 
getValue() - Method in class loci.poi.hssf.record.formula.NumberPtg
 
getValue() - Method in class loci.poi.hssf.record.formula.StringPtg
 
getValue() - Method in class loci.poi.hssf.record.FormulaRecord

get the calculated value of the formula

getValue() - Method in class loci.poi.hssf.record.LabelRecord

get the value

getValue() - Method in class loci.poi.hssf.record.NumberRecord

get the value for the cell

getValue(int) - Method in class loci.poi.util.BitField

Obtain the value for the specified BitField, appropriately
 shifted right.

getValue() - Method in class ome.xml.model.BooleanAnnotation
 
getValue() - Method in class ome.xml.model.CommentAnnotation
 
getValue() - Method in class ome.xml.model.DoubleAnnotation
 
getValue() - Method in enum ome.xml.model.enums.AcquisitionMode
 
getValue() - Method in enum ome.xml.model.enums.ArcType
 
getValue() - Method in enum ome.xml.model.enums.Binning
 
getValue() - Method in enum ome.xml.model.enums.Compression
 
getValue() - Method in enum ome.xml.model.enums.ContrastMethod
 
getValue() - Method in enum ome.xml.model.enums.Correction
 
getValue() - Method in enum ome.xml.model.enums.DetectorType
 
getValue() - Method in enum ome.xml.model.enums.DimensionOrder
 
getValue() - Method in enum ome.xml.model.enums.ExperimentType
 
getValue() - Method in enum ome.xml.model.enums.FilamentType
 
getValue() - Method in enum ome.xml.model.enums.FillRule
 
getValue() - Method in enum ome.xml.model.enums.FilterType
 
getValue() - Method in enum ome.xml.model.enums.FontFamily
 
getValue() - Method in enum ome.xml.model.enums.FontStyle
 
getValue() - Method in enum ome.xml.model.enums.IlluminationType
 
getValue() - Method in enum ome.xml.model.enums.Immersion
 
getValue() - Method in enum ome.xml.model.enums.LaserMedium
 
getValue() - Method in enum ome.xml.model.enums.LaserType
 
getValue() - Method in enum ome.xml.model.enums.LineCap
 
getValue() - Method in enum ome.xml.model.enums.Marker
 
getValue() - Method in enum ome.xml.model.enums.Medium
 
getValue() - Method in enum ome.xml.model.enums.MicrobeamManipulationType
 
getValue() - Method in enum ome.xml.model.enums.MicroscopeType
 
getValue() - Method in enum ome.xml.model.enums.NamingConvention
 
getValue() - Method in enum ome.xml.model.enums.PixelType
 
getValue() - Method in enum ome.xml.model.enums.Pulse
 
getValue() - Method in class ome.xml.model.LongAnnotation
 
getValue() - Method in class ome.xml.model.primitives.PrimitiveType

Retrieves the concrete delegate value.

getValue() - Method in class ome.xml.model.TagAnnotation
 
getValue() - Method in class ome.xml.model.TermAnnotation
 
getValue() - Method in class ome.xml.model.TimestampAnnotation
 
getValue() - Method in class ome.xml.model.UUID
 
getValue() - Method in class ome.xml.model.XMLAnnotation
 
getValueAsString(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Returns a String containing a human-readable
 version of the data item.

getValueCount() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's ValueCount value.

getValueForKey() - Method in class loci.formats.meta.OriginalMetadataAnnotation

Return just the value (i.e.

getValueList() - Method in class ome.metakit.ColumnMap

Return the list of values in this map's column.

getValueName(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns the mnemonic name associated with a particular value
 that this tag's data may take on, or null if
 no name is present.

getValueOffset() - Method in class loci.formats.tiff.TiffIFDEntry

Retrieves the entry's ValueOffset value.

getValues() - Method in class loci.formats.in.PrairieMetadata.Frame

Gets a read-only map of Frame key/value pairs.

getValues() - Method in class ome.metakit.ColumnMap

Return an array of the values in this map's column.

getValuesDataType() - Method in class loci.poi.hssf.record.SeriesRecord

Get the values data type field for the Series record.

getVar(String) - Method in class loci.common.ReflectedUniverse

Deprecated.
Returns the value of a variable or field in the universe.

getVariableAttributes(String) - Method in interface loci.formats.services.NetCDFService

Retrieves all of a variable's attributes.

getVariableAttributes(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getVariableList() - Method in interface loci.formats.services.NetCDFService

Retrieves an exhaustive list of the HDF paths for all variables in the
 HDF document.

getVariableList() - Method in class loci.formats.services.NetCDFServiceImpl
 
getVariableValue(String) - Method in interface loci.formats.services.NetCDFService

Retrieves a variable's value.

getVariableValue(String) - Method in class loci.formats.services.NetCDFServiceImpl
 
getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getVariant() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
getVariantLength(long) - Static method in class loci.poi.hpsf.Variant

Returns a variant type's length.

getVariantName(long) - Static method in class loci.poi.hpsf.Variant

Returns the variant type name associated with a variant type
 number.

getVariantType() - Method in exception loci.poi.hpsf.VariantTypeException

Returns the offending variant type.

getVaryDisplayPattern() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getVCenter() - Method in class loci.poi.hssf.record.VCenterRecord

get whether to center vertically or not

getVendor() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return a vendor string for the package.

getVersion() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Deprecated. 

getVersion() - Static method in class com.sun.media.imageioimpl.common.PackageUtil

Return a version string for the package.

getVersion() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox

Returns the Version data element.

getVersion() - Method in class loci.poi.hssf.record.BOFRecord

Version number - for BIFF8 should be 0x06

getVersionNumber(String[]) - Method in class loci.plugins.macro.LociFunctions
 
getVertAnWaveletFilters(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWT

Returns the vertical analysis wavelet filters used in each
 level, for the specified tile-component.

getVertAnWaveletFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the vertical analysis wavelet filters used in each level, for
 the specified component and tile.

getVerticalAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get the vertical alignment of text in the cell

getVerticalAlignment() - Method in class loci.poi.hssf.record.TextRecord

Get the vertical alignment field for the Text record.

getVerticalAlignment() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get the type of vertical alignment for the cell

getVerticalHold() - Method in class loci.poi.hssf.record.WindowOneRecord

get the vertical position of the window (in 1/20ths of a point)

getVerticallyCenter(boolean) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determine whether printed output for this sheet will be vertically centered.

getVerticalResolution() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox

Return the vertical resolution.

getVerticalScale() - Method in class loci.poi.hssf.record.PlotGrowthRecord

Get the verticalScale field for the PlotGrowth record.

getVerticalSplitLeftColumn() - Method in class loci.poi.hssf.util.PaneInformation

For a vertical split returns the left column in the RIGHT pane.

getVerticalSplitPosition() - Method in class loci.poi.hssf.util.PaneInformation

Returns the vertical position of the split.

getVerticalTextAlignment() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
 
getVerWFilter() - Method in class jj2000.j2k.wavelet.analysis.SubbandAn

This function returns the vertical wavelet filter relevant to this
 subband

getVerWFilter() - Method in class jj2000.j2k.wavelet.Subband

This function returns the vertical wavelet filter relevant to this
 subband

getVerWFilter() - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn

This function returns the vertical wavelet filter relevant to this
 subband

getVFilters(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the vertical analysis filters to be used in component 'n' and
 tile 't'.

getVFilters(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the vertical analysis filters to be used in component 'n' and
 tile 't'.

getViewableArray() - Method in interface loci.poi.poifs.dev.POIFSViewable

Get an array of objects, some of which may implement
 POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Get an array of objects, some of which may implement
 POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.DocumentNode

Get an array of objects, some of which may implement
 POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get an array of objects, some of which may implement
 POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Get an array of objects, some of which may implement
 POIFSViewable

getViewableArray() - Method in class loci.poi.poifs.property.Property

Get an array of objects, some of which may implement
 POIFSViewable

getViewableIterator() - Method in interface loci.poi.poifs.dev.POIFSViewable

Get an Iterator of objects, some of which may implement
 POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.DirectoryNode

Get an Iterator of objects, some of which may implement
 POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.DocumentNode

Get an Iterator of objects, some of which may implement
 POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSDocument

Get an Iterator of objects, some of which may implement
 POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.filesystem.POIFSFileSystem

Get an Iterator of objects, some of which may implement
 POIFSViewable

getViewableIterator() - Method in class loci.poi.poifs.property.Property

Get an Iterator of objects, some of which may implement
 POIFSViewable

getVirtualInfo() - Method in class loci.plugins.in.ImporterOptions
 
getVirtualReader() - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getVisible() - Method in class ome.xml.model.Shape
 
getVoltage() - Method in class loci.formats.in.ND2Handler
 
getVoltage() - Method in class ome.xml.model.Detector
 
getVoltage() - Method in class ome.xml.model.DetectorSettings
 
getVoxSzX() - Method in interface loci.formats.services.WlzService

Gets voxel width.

getVoxSzX() - Method in class loci.formats.services.WlzServiceImpl
 
getVoxSzY() - Method in interface loci.formats.services.WlzService

Gets voxel height.

getVoxSzY() - Method in class loci.formats.services.WlzServiceImpl
 
getVoxSzZ() - Method in interface loci.formats.services.WlzService

Gets voxel depth.

getVoxSzZ() - Method in class loci.formats.services.WlzServiceImpl
 
getVResolution() - Method in class loci.poi.hssf.record.PrintSetupRecord
 
getVResolution() - Method in class loci.poi.hssf.usermodel.HSSFPrintSetup

Returns the vertical resolution.

getWaitTime() - Method in class loci.formats.in.PrairieMetadata

Gets the waitTime recorded in the configuration.

getWavelength(Integer) - Static method in class loci.formats.FormatTools
 
getWavelength(int, int, int, int) - Method in class loci.formats.in.LegacyND2Reader
 
getWavelength() - Method in class ome.xml.model.Laser
 
getWavelength() - Method in class ome.xml.model.LightSourceSettings
 
getWavelengths() - Method in class loci.formats.in.MetamorphHandler
 
getWeight() - Method in class loci.poi.hssf.record.LineFormatRecord

Get the weight field for the LineFormat record.

getWell(int) - Method in class ome.xml.model.Plate
 
getWell() - Method in class ome.xml.model.WellSample
 
getWellAnnotationRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellAnnotationRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellAnnotationRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellAnnotationRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellAnnotationRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellAnnotationRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellAnnotationRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellAnnotationRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellColor(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellColor(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellColor(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellColor(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellColumn(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellColumn(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellColumn(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellColumn(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getWellCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellExternalDescription(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellExternalDescription(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellExternalDescription(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellExternalDescription(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellExternalIdentifier(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellExternalIdentifier(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellExternalIdentifier(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellExternalIdentifier(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellID(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellID(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellID(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellID(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellOriginX() - Method in class ome.xml.model.Plate
 
getWellOriginY() - Method in class ome.xml.model.Plate
 
getWellReagentRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellReagentRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellReagentRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellReagentRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellRow(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellRow(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellRow(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellRow(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSample(int) - Method in class ome.xml.model.Well
 
getWellSampleAnnotationRef(int, int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleAnnotationRef(int, int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleAnnotationRef(int, int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleAnnotationRef(int, int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSampleAnnotationRefCount(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleAnnotationRefCount(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleAnnotationRefCount(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleAnnotationRefCount(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSampleCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSampleID(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleID(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleID(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleID(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSampleImageRef(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleImageRef(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleImageRef(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleImageRef(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSampleIndex(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleIndex(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleIndex(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleIndex(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSamplePositionX(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSamplePositionX(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSamplePositionX(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSamplePositionX(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSamplePositionY(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSamplePositionY(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSamplePositionY(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSamplePositionY(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSampleRefCount(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleRefCount(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleRefCount(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleRefCount(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellSampleTimepoint(int, int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellSampleTimepoint(int, int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellSampleTimepoint(int, int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellSampleTimepoint(int, int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWellType(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getWellType(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getWellType(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getWellType(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getWhere() - Method in class mdbtools.dbengine.sql.Select
 
getWidgets() - Method in class loci.plugins.config.FlexWidgets
 
getWidgets() - Method in interface loci.plugins.config.IFormatWidgets
 
getWidgets() - Method in class loci.plugins.config.ND2Widgets
 
getWidgets() - Method in class loci.plugins.config.PictWidgets
 
getWidgets() - Method in class loci.plugins.config.QTWidgets
 
getWidgets() - Method in class loci.plugins.config.SDTWidgets
 
getWidgets() - Method in class loci.plugins.config.TiffDelegateWidgets
 
getWidth() - Method in class com.luratech.lwf.lwfDecoder
 
getWidth() - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage

Returns the width of the image.

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Returns the width of the image.

getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
getWidth() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
 
getWidth(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
getWidth() - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder

Returns the number of leafs along the horizontal direction.

getWidth() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder

Returns the number of leafs along the horizontal direction.

getWidth() - Method in class loci.formats.codec.JPEGTileDecoder
 
getWidth(int) - Method in class loci.formats.in.LegacyND2Reader
 
getWidth() - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.getWidth()

getWidth() - Method in class loci.formats.services.LuraWaveServiceImpl
 
getWidth(IFormatReader, String, int) - Static method in class loci.plugins.util.BFVirtualStack
 
getWidth() - Method in class loci.plugins.util.BFVirtualStack
 
getWidth() - Method in class loci.plugins.util.RecordedImageProcessor
 
getWidth() - Method in class loci.poi.ddf.EscherBlipWMFRecord

Retrieve the width of the metafile in EMU's (English Metric Units).

getWidth() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the width field for the AxisParent record.

getWidth() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getWidth() - Method in class loci.poi.hssf.record.ChartRecord

Get the width field for the Chart record.

getWidth() - Method in class loci.poi.hssf.record.TextRecord

Get the width field for the Text record.

getWidth() - Method in class loci.poi.hssf.record.WindowOneRecord

get the width of the window

getWidth() - Method in class loci.poi.hssf.util.RangeAddress
 
getWidth() - Method in class ome.xml.model.Mask
 
getWidth() - Method in class ome.xml.model.Rectangle
 
getWindowing() - Method in class loci.poi.hssf.record.DateWindow1904Record

gets whether or not to use 1904 date windowing (which means you'll be screwed in 2004)

getWindowlessInfo() - Method in class loci.plugins.in.ImporterOptions
 
getWindowOne() - Method in class loci.poi.hssf.model.Workbook
 
getWlzOrgLabelName() - Method in interface loci.formats.services.WlzService

Gets the text string used for the Woolz origin label.

getWlzOrgLabelName() - Method in class loci.formats.services.WlzServiceImpl
 
getWordCount() - Method in class loci.poi.hpsf.SummaryInformation

Returns the word count or 0 if the SummaryInformation does
 not contain a word count.

getWorkbook() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
 
getWorkingDistance() - Method in class ome.xml.model.Objective
 
getWrappedStream() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
getWrapText() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether to wrap the text in the cell

getWrapText() - Method in class loci.poi.hssf.usermodel.HSSFCellStyle

get whether the text should be wrapped

getWriteAccess() - Method in class loci.poi.hssf.model.Workbook
 
getWriteCodeStreamOnly() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Gets writeCodeStreamOnly.

getWriteProtect() - Method in class loci.poi.hssf.model.Workbook
 
getWriter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Returns the current ImageWriter.

getWriter(String) - Method in class loci.formats.ImageWriter

Gets the writer used to save the given file.

getWriter() - Method in class loci.formats.ImageWriter

Gets the writer used to save the current file.

getWriter(Class<? extends IFormatWriter>) - Method in class loci.formats.ImageWriter

Gets the file format writer instance matching the given class.

getWriter() - Method in class loci.formats.WriterWrapper

Gets the wrapped writer.

getWriterList() - Method in class loci.tests.testng.FormatWriterTest
 
getWriters() - Method in class loci.formats.ImageWriter

Gets all constituent file format writers.

getWSBool1() - Method in class loci.poi.hssf.record.WSBoolRecord

get first byte (see bit getters)

getWSBool2() - Method in class loci.poi.hssf.record.WSBoolRecord

get the second byte (see bit getters)

getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Returns the data type used by the filters in this object, as defined in
 the 'DataBlk' interface for specified tile-component.

getWTDataType(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Returns the data type used by the filters in this object, as defined in
 the 'DataBlk' interface for specified tile-component.

getWTDataType() - Method in class jj2000.j2k.wavelet.WTFilterSpec

Returns the data type used by the filters in this object, as defined in 
 the 'DataBlk' interface.

getX() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the x field for the AxisParent record.

getX() - Method in class loci.poi.hssf.record.ChartRecord

Get the x field for the Chart record.

getX() - Method in class loci.poi.hssf.record.PaneRecord

Get the x field for the Pane record.

getX() - Method in class loci.poi.hssf.record.TextRecord

Get the x field for the Text record.

getX() - Method in class ome.xml.model.Ellipse
 
getX() - Method in class ome.xml.model.Label
 
getX() - Method in class ome.xml.model.Mask
 
getX() - Method in class ome.xml.model.Point
 
getX() - Method in class ome.xml.model.Rectangle
 
getX() - Method in class ome.xml.model.StageLabel
 
getX1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The top left x coordinate of this group.

getX1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The top left x coordinate of this group.

getX1() - Method in class ome.xml.model.Line
 
getX2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The bottom right x coordinate of this group.

getX2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The bottom right x coordinate of this group.

getX2() - Method in class ome.xml.model.Line
 
getXAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord

Get the x axis upper left field for the Legend record.

getXBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the x Basis field for the FontBasis record.

getXBATChainOffset(int) - Static method in class loci.poi.poifs.storage.BATBlock
 
getXBATCount() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getXBATIndex() - Method in class loci.poi.poifs.storage.HeaderBlockReader
 
getXFAt(int) - Method in class loci.poi.hssf.record.MulBlankRecord

returns the xf index for column (coffset = column - field_2_first_col)

getXFAt(int) - Method in class loci.poi.hssf.record.MulRKRecord

returns the xf index for column (coffset = column - field_2_first_col)

getXFields() - Method in class loci.formats.in.ND2Handler
 
getXFIndex() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
getXFIndex() - Method in class loci.poi.hssf.record.BlankRecord

get the index of the extended format record to style this cell with

getXFIndex() - Method in class loci.poi.hssf.record.BoolErrRecord

get the index to the ExtendedFormat

getXFIndex() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
 
getXFIndex() - Method in class loci.poi.hssf.record.ColumnInfoRecord

get the columns' default format info

getXFIndex() - Method in class loci.poi.hssf.record.FormulaRecord
 
getXFIndex() - Method in class loci.poi.hssf.record.LabelRecord
 
getXFIndex() - Method in class loci.poi.hssf.record.LabelSSTRecord

get the index to the extended format record

getXFIndex() - Method in class loci.poi.hssf.record.NumberRecord

get the index to the ExtendedFormat

getXFIndex() - Method in class loci.poi.hssf.record.RKRecord
 
getXFIndex() - Method in class loci.poi.hssf.record.RowRecord

if the row is formatted then this is the index to the extended format record

getXFIndex() - Method in class loci.poi.hssf.record.StyleRecord

get the actual index of the style extended format record

getXFIndexForColAt(short) - Method in class loci.poi.hssf.model.Sheet

get the index to the ExtendedFormatRecord "associated" with 
 the column at specified 0-based index.

getXfpos() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
getXFType() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is a cell or style XFRecord

getXML(Document) - Static method in class loci.common.xml.XMLTools

Converts the given DOM back to a string.

getXML() - Method in class loci.formats.tools.EditTiffG
 
getXMLAnnotation(int) - Method in class ome.xml.model.StructuredAnnotations
 
getXMLAnnotationAnnotationCount(int) - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationAnnotationCount(int) - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationAnnotationCount(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationAnnotationCount(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXMLAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationAnnotationRef(int, int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationAnnotationRef(int, int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXMLAnnotationAnnotator(int) - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationAnnotator(int) - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationAnnotator(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationAnnotator(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXMLAnnotationCount() - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationCount() - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationCount() - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationCount() - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXMLAnnotationDescription(int) - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationDescription(int) - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationDescription(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationDescription(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXMLAnnotationID(int) - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationID(int) - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationID(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationID(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXMLAnnotationNamespace(int) - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationNamespace(int) - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationNamespace(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationNamespace(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXMLAnnotationValue(int) - Method in class ome.xml.meta.AggregateMetadata
 
getXMLAnnotationValue(int) - Method in class ome.xml.meta.DummyMetadata
 
getXMLAnnotationValue(int) - Method in interface ome.xml.meta.MetadataRetrieve
 
getXMLAnnotationValue(int) - Method in class ome.xml.meta.OMEXMLMetadataImpl
 
getXmlFooter() - Static method in class loci.formats.tools.PrintFormatTable
 
getXmlFormatLine(String, boolean, boolean, boolean, String) - Static method in class loci.formats.tools.PrintFormatTable
 
getXmlHeader() - Static method in class loci.formats.tools.PrintFormatTable
 
getXPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getXPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getXPosition(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getXPositions() - Method in class loci.formats.in.ND2Handler
 
getXResolution() - Method in class loci.formats.tiff.IFD

Retrieve the X resolution (TIFF tag XResolution) from this IFD.

getXSize() - Method in class loci.poi.hssf.record.LegendRecord

Get the x size field for the Legend record.

getY() - Method in class loci.poi.hssf.record.AxisParentRecord

Get the y field for the AxisParent record.

getY() - Method in class loci.poi.hssf.record.ChartRecord

Get the y field for the Chart record.

getY() - Method in class loci.poi.hssf.record.PaneRecord

Get the y field for the Pane record.

getY() - Method in class loci.poi.hssf.record.TextRecord

Get the y field for the Text record.

getY() - Method in class ome.xml.model.Ellipse
 
getY() - Method in class ome.xml.model.Label
 
getY() - Method in class ome.xml.model.Mask
 
getY() - Method in class ome.xml.model.Point
 
getY() - Method in class ome.xml.model.Rectangle
 
getY() - Method in class ome.xml.model.StageLabel
 
getY1() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The top left y coordinate of this group.

getY1() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The top left y coordinate of this group.

getY1() - Method in class ome.xml.model.Line
 
getY2() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch

The bottom right y coordinate of this group.

getY2() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup

The bottom right y coordinate of this group.

getY2() - Method in class ome.xml.model.Line
 
getYAxisUpperLeft() - Method in class loci.poi.hssf.record.LegendRecord

Get the y axis upper left field for the Legend record.

getYBasis() - Method in class loci.poi.hssf.record.FontBasisRecord

Get the y Basis field for the FontBasis record.

getYPoints() - Method in class loci.poi.hssf.usermodel.HSSFPolygon
 
getYPosition() - Method in class loci.poi.hssf.record.ChartFormatRecord
 
getYPosition(String) - Method in class loci.poi.hssf.util.RangeAddress
 
getYPositions() - Method in class loci.formats.in.ND2Handler
 
getYResolution() - Method in class loci.formats.tiff.IFD

Retrieve the Y resolution (TIFF tag YResolution) from this IFD.

getYSize() - Method in class loci.poi.hssf.record.LegendRecord

Get the y size field for the Legend record.

getZ() - Method in class loci.formats.gui.ImageViewer

Gets the Z value of the currently displayed image.

getZ() - Method in class ome.xml.model.StageLabel
 
getZBegin(int) - Method in class loci.plugins.in.ImporterOptions
 
getZBegin(int) - Method in class loci.plugins.in.ImportProcess
 
getZCount(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.SERIES.

getZCTCoords(int) - Method in class loci.formats.ChannelMerger
 
getZCTCoords(int) - Method in class loci.formats.ChannelSeparator
 
getZCTCoords(int) - Method in class loci.formats.DimensionSwapper
 
getZCTCoords(int) - Method in class loci.formats.FileStitcher
 
getZCTCoords(int) - Method in class loci.formats.FormatReader
 
getZCTCoords(IFormatReader, int) - Static method in class loci.formats.FormatTools

Gets the Z, C and T coordinates corresponding
 to the given rasterized index value.

getZCTCoords(String, int, int, int, int, int) - Static method in class loci.formats.FormatTools

Gets the Z, C and T coordinates corresponding to the given rasterized
 index value.

getZCTCoords(int) - Method in interface loci.formats.IFormatReader

Gets the Z, C and T coordinates corresponding
 to the given rasterized index value.

getZCTCoords(int) - Method in class loci.formats.ImageReader
 
getZCTCoords(int) - Method in class loci.formats.ReaderWrapper
 
getZCTCoords(Double, Double[], Double[], Double[]) - Method in class loci.plugins.macro.LociFunctions
 
getZEnd(int) - Method in class loci.plugins.in.ImporterOptions
 
getZEnd(int) - Method in class loci.plugins.in.ImportProcess

Valid only after ImportStep.STACK.

getZero1() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 1 field for the Tick record.

getZero2() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 2 field for the Tick record.

getZero3() - Method in class loci.poi.hssf.record.TickRecord

Get the zero 3 field for the Tick record.

getZeroHeight() - Method in class loci.poi.hssf.record.RowRecord

get whether or not to display this row with 0 height

getZeroHeight() - Method in class loci.poi.hssf.usermodel.HSSFRow

get whether or not to display this row with 0 height

getZoom() - Method in class loci.formats.in.MetamorphHandler
 
getZoom() - Method in class ome.xml.model.Detector
 
getZoom() - Method in class ome.xml.model.DetectorSettings
 
getZPositions() - Method in class loci.formats.in.MetamorphHandler
 
getZPositions() - Method in class loci.formats.in.ND2Handler
 
getZSections() - Method in class loci.formats.in.ND2Handler
 
getZSlices(int) - Method in class loci.formats.in.LegacyND2Reader
 
getZStep(int) - Method in class loci.plugins.in.ImporterOptions
 
getZStep(int) - Method in class loci.plugins.in.ImportProcess
 
GIF_MAGIC_STRING - Static variable in class loci.formats.in.GIFReader
 
GIFImageMetadata - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
GIFImageMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
GIFImageMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormatResources
 
GIFImageWriter - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageWriter(GIFImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
 
GIFImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
 
GIFReader - Class in loci.formats.in

GIFReader is the file format reader for Graphics Interchange Format
 (GIF) files.

GIFReader() - Constructor for class loci.formats.in.GIFReader

Constructs a new GIF reader.

GIFStreamMetadata - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFStreamMetadata(boolean, String, String, String[], String[]) - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
GIFStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
GIFStreamMetadataFormat - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFStreamMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.gif
 
GIFStreamMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormatResources
 
globalColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
GPS_VERSION_2_2 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

An array of bytes containing the values {'2', '2', '0',
 '0'} to be used with the "GPSVersionID" tag to indicate
 GPS version 2.2.

GRAPHICS_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the graphics domain.

GRAY_RESPONSE_CURVE - Static variable in class loci.formats.tiff.IFD
 
GRAY_RESPONSE_UNIT - Static variable in class loci.formats.tiff.IFD
 
GRAY_RESPONSE_UNIT_HUNDRED_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_HUNDREDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_TEN_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_TENTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GRAY_RESPONSE_UNIT_THOUSANDTHS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "GrayResponseUnit" tag.

GREATER_THAN - Static variable in class mdbtools.dbengine.sql.Equation
 
GREATER_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation
 
GreaterEqualPtg - Class in loci.poi.hssf.record.formula

PTG class to implement greater or equal to

GreaterEqualPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg

Creates new GreaterEqualPtg

GreaterEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterEqualPtg
 
GreaterThanPtg - Class in loci.poi.hssf.record.formula

Greater than operator PTG ">"

GreaterThanPtg() - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg

Constructor.

GreaterThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.GreaterThanPtg

Constructor.

green - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
green - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
greenZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
gridset - Variable in class loci.poi.hssf.model.Sheet
 
GridsetRecord - Class in loci.poi.hssf.record

Title:        Gridset Record.

GridsetRecord() - Constructor for class loci.poi.hssf.record.GridsetRecord
 
GridsetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GridsetRecord

Constructs a GridSet record and sets its fields appropriately.

group - Variable in class loci.formats.FormatReader

Whether or not to group multi-file formats.

groupColumn(short, short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Create an outline for the provided column range.

groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.model.Sheet

Creates an outline group for the specified columns.

groupColumnRange(short, short, boolean) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Creates an outline group for the specified columns.

groupFilesBox - Variable in class loci.plugins.in.MainDialog
 
GroupMarkerSubRecord - Class in loci.poi.hssf.record

The group marker record is used as a position holder for groups.

GroupMarkerSubRecord() - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord
 
GroupMarkerSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GroupMarkerSubRecord

Constructs a group marker record and sets its fields appropriately.

groupRow(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
 
groupRowRange(int, int, boolean) - Method in class loci.poi.hssf.model.Sheet
 
GROUPSHAPE__1DADJUSTMENT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__BEHINDDOCUMENT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__DESCRIPTION - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__EDITEDWRAP - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__HIDDEN - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__HYPERLINK - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__ISBUTTON - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__ONDBLCLICKNOTIFY - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__PRINT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__REGROUPID - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__SHAPENAME - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTLEFT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTRIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPDISTTOP - Static variable in class loci.poi.ddf.EscherProperties
 
GROUPSHAPE__WRAPPOLYGONVERTICES - Static variable in class loci.poi.ddf.EscherProperties
 
GuardBitsSpec - Class in jj2000.j2k.quantization

This class extends ModuleSpec class in order to hold specifications about
 number of guard bits in each tile-component.

GuardBitsSpec(int, int, byte) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec

Constructs an empty 'GuardBitsSpec' with specified number of tile and
 components.

GuardBitsSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.quantization.GuardBitsSpec

Constructs a new 'GuardBitsSpec' for the specified number of components
 and tiles and the arguments of "-Qguard_bits" option.

GUITools - Class in loci.formats.gui

A utility class for working with graphical user interfaces.

GutsRecord - Class in loci.poi.hssf.record

Title:        Guts Record

GutsRecord() - Constructor for class loci.poi.hssf.record.GutsRecord
 
GutsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.GutsRecord

Constructs a Guts record and sets its fields appropriately.

GZipHandle - Class in loci.common

StreamHandle implementation for reading from gzip-compressed files
 or byte arrays.

GZipHandle(String) - Constructor for class loci.common.GZipHandle

Construct a new GZipHandle for the given file.





H

h - Variable in class jj2000.j2k.codestream.CoordInfo

Object's height

h - Variable in class jj2000.j2k.codestream.PrecInfo

Precinct height in the corresponding resolution level

h - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Height of the code-block

h - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The vertical dimensions of the base level

h - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The vertical dimensions of the base level

h - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The height of the code-block

h - Variable in class jj2000.j2k.image.DataBlk

The height of the block, in pixels.

h - Variable in class jj2000.j2k.image.input.ImgReader

The height of the image

h - Variable in class jj2000.j2k.roi.encoder.ROI

height of rectangular ROI

h - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Height of the subband mask

h - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The height of the code-block

h - Variable in class jj2000.j2k.wavelet.Subband

The height of the subband

HAIR - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
HALFTONE_HINTS - Static variable in class loci.formats.tiff.IFD
 
HamamatsuVMSReader - Class in loci.formats.in

HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.

HamamatsuVMSReader() - Constructor for class loci.formats.in.HamamatsuVMSReader

Constructs a new Hamamatsu VMS reader.

handleException(Throwable) - Static method in class jj2000.j2k.JJ2KExceptionHandler

Handles the exception.

HandleException - Exception in loci.common

HandleException is the exception thrown when something goes wrong in
 one of the custom I/O classes.

HandleException() - Constructor for exception loci.common.HandleException
 
HandleException(String) - Constructor for exception loci.common.HandleException
 
HandleException(String, Throwable) - Constructor for exception loci.common.HandleException
 
HandleException(Throwable) - Constructor for exception loci.common.HandleException
 
handleExtension(String, Object[]) - Method in class loci.plugins.macro.MacroFunctions
 
handleMetadataStore(IFormatReader) - Method in class loci.formats.Memoizer

:

 
  Serialization: If an unknown MetadataStore
  implementation is passed in when no memo file exists, then a replacement
  MetadataStore will be created and set on the ReaderWrapper.reader
  delegate before calling ReaderWrapper.setId(String).

harvestResults(GenericDialog) - Method in class loci.plugins.in.ColorDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.CropDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.FilePatternDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.IdDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.ImporterDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.LocationDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.MainDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.MemoryDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.RangeDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.SeriesDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.SwapDialog
 
harvestResults(GenericDialog) - Method in class loci.plugins.in.UpgradeDialog
 
hasCell() - Method in class loci.poi.hssf.util.RangeAddress
 
hasChildNodes() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
hasCompanionFiles - Variable in class loci.formats.FormatReader

Whether this format supports multi-file datasets.

hasCompanionFiles() - Method in class loci.formats.FormatReader
 
hasCompanionFiles() - Method in interface loci.formats.IFormatReader

Returns true if this format supports multi-file datasets.

hasCompanionFiles() - Method in class loci.formats.ImageReader
 
hasCompanionFiles() - Method in class loci.formats.ReaderWrapper
 
hasExposureTime(int) - Method in class loci.tests.testng.Configuration
 
hasExtendedMeasureInfo - Variable in class loci.formats.in.SDTInfo
 
hasFlattenedResolutions() - Method in class loci.formats.FormatReader
 
hasFlattenedResolutions() - Method in interface loci.formats.IFormatReader

Return whether or not resolution flattening is enabled.

hasFlattenedResolutions() - Method in class loci.formats.ImageReader
 
hasFlattenedResolutions() - Method in class loci.formats.ReaderWrapper
 
Hash(short, byte) - Static method in class com.sun.media.imageioimpl.common.LZWStringTable
 
hashCode() - Method in class loci.common.Location
 
hashCode() - Method in class loci.common.Region
 
hashCode() - Method in class loci.formats.tiff.TiffRational

Reasonable hash value for use with hashtables.

hashCode() - Method in class loci.plugins.config.FormatEntry
 
hashCode() - Method in class loci.plugins.prefs.OptionsList
 
hashCode() - Method in class loci.poi.ddf.EscherComplexProperty

Calculates a hashcode for this property.

hashCode() - Method in class loci.poi.ddf.EscherSimpleProperty

Returns a hashcode so that this object can be stored in collections that
 require the use of such things.

hashCode() - Method in class loci.poi.hpsf.ClassID
 
hashCode() - Method in class loci.poi.hpsf.CustomProperty
 
hashCode() - Method in class loci.poi.hpsf.Property
 
hashCode() - Method in class loci.poi.hpsf.PropertySet
 
hashCode() - Method in class loci.poi.hpsf.Section
 
hashCode() - Method in class loci.poi.hpsf.SpecialPropertySet
 
hashCode() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
hashCode() - Method in class loci.poi.hssf.record.SSTRecord
 
hashCode() - Method in class loci.poi.hssf.record.UnicodeString
 
hashCode() - Method in class loci.poi.poifs.filesystem.DocumentDescriptor

calculate and return the hashcode

hashCode() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath

calculate and return the hashcode

hashCode() - Method in class loci.poi.util.DoubleList

THIS MOST LIKELY DOES NOT WORK
 Returns the hash code value for this list.

hashCode() - Method in class loci.poi.util.IntList

Returns the hash code value for this list.

hashCode() - Method in class loci.poi.util.ShortList

Returns the hash code value for this list.

hashCode() - Method in class loci.tests.testng.Configuration
 
hashPassword(String) - Static method in class loci.poi.hssf.record.FileSharingRecord
 
hashPassword(String) - Static method in class loci.poi.hssf.record.PasswordRecord
 
hasImageDescription() - Method in class loci.tests.testng.Configuration
 
hasJPEGTables - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
hasMeasFCSInfo - Variable in class loci.formats.in.SDTInfo
 
hasMeasHISTInfo - Variable in class loci.formats.in.SDTInfo
 
hasMeasStopInfo - Variable in class loci.formats.in.SDTInfo
 
hasMeasureInfo - Variable in class loci.formats.in.SDTInfo
 
hasMultibyte(String) - Static method in class loci.poi.util.StringUtil

check the parameter has multibyte character

hasNext() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator
 
hasNextRecord() - Method in class loci.poi.hssf.record.RecordInputStream
 
hasPlainTextExtension - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
hasRange() - Method in class loci.poi.hssf.util.RangeAddress
 
hasSheetName() - Method in class loci.poi.hssf.util.RangeAddress
 
hasThumbnails(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
hasValueNames() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if there are mnemonic names associated with
 the set of legal values for the data associated with this tag.

hbuf - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The DataOutputStream to store header data.

HCenterRecord - Class in loci.poi.hssf.record

Title:        HCenter record

HCenterRecord() - Constructor for class loci.poi.hssf.record.HCenterRecord
 
HCenterRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HCenterRecord

Constructs an HCenter record and sets its fields appropriately.

HCS_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the high content screening domain.

hd - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The decoded bit stream header

HDF_MAGIC_STRING - Static variable in class loci.formats.in.ImarisHDFReader
 
header - Variable in class loci.poi.hssf.model.Sheet
 
HEADER_KEY - Static variable in class loci.common.IniTable

Key to use for storing header value (in brackets).

HEADER_MARKER - Static variable in class loci.formats.in.VisitechReader
 
HEADER_SIZE - Static variable in class loci.formats.in.UBMReader
 
HeaderBlockConstants - Interface in loci.poi.poifs.storage

Constants used in reading/writing the Header block

HeaderBlockReader - Class in loci.poi.poifs.storage

The block containing the archive header

HeaderBlockReader(InputStream, int) - Constructor for class loci.poi.poifs.storage.HeaderBlockReader

create a new HeaderBlockReader from an InputStream

HeaderBlockWriter - Class in loci.poi.poifs.storage

The block containing the archive header

HeaderBlockWriter(int) - Constructor for class loci.poi.poifs.storage.HeaderBlockWriter

Create a single instance initialized with default values

HeaderBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is defined to represent an Image Header Box of JPEG JP2 file
  format.

HeaderBox(int, int, int, int, int, int, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Create an Image Header Box from the element values.

HeaderBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Create an Image Header Box using the content data.

HeaderBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox

Constructs an Image Header Box from a Node.

HeaderDecoder - Class in jj2000.j2k.codestream.reader

This class reads Main and Tile-part headers from the codestream.

HeaderDecoder(RandomAccessIO, J2KImageReadParamJava, HeaderInfo) - Constructor for class jj2000.j2k.codestream.reader.HeaderDecoder

Creates a HeaderDecoder instance and read in two passes the main header
 of the codestream.

HeaderEncoder - Class in jj2000.j2k.codestream.writer

This class writes almost of the markers and marker segments in main header
 and in tile-part headers.

HeaderEncoder(ImgData, boolean[], ForwardWT, Tiler, J2KImageWriteParamJava, ROIScaler, PostCompRateAllocator) - Constructor for class jj2000.j2k.codestream.writer.HeaderEncoder

Initializes the header writer with the references to the coding chain.

headerIFDs - Variable in class loci.formats.in.LeicaReader

Array of IFD-like structures containing metadata.

HeaderInfo - Class in jj2000.j2k.codestream

Classe that holds information found in the marker segments of the main and
 tile-part headers.

HeaderInfo() - Constructor for class jj2000.j2k.codestream.HeaderInfo
 
HeaderInfo.COC - Class in jj2000.j2k.codestream

Internal class holding information found in the COC marker segments

HeaderInfo.COC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COC
 
HeaderInfo.COD - Class in jj2000.j2k.codestream

Internal class holding information found in the COD marker segments

HeaderInfo.COD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COD
 
HeaderInfo.COM - Class in jj2000.j2k.codestream

Internal class holding information found in the COM marker segments

HeaderInfo.COM() - Constructor for class jj2000.j2k.codestream.HeaderInfo.COM
 
HeaderInfo.CRG - Class in jj2000.j2k.codestream

Internal class holding information found in the CRG marker segment

HeaderInfo.CRG() - Constructor for class jj2000.j2k.codestream.HeaderInfo.CRG
 
HeaderInfo.POC - Class in jj2000.j2k.codestream

Internal class holding information found in the POC marker segments

HeaderInfo.POC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.POC
 
HeaderInfo.QCC - Class in jj2000.j2k.codestream

Internal class holding information found in the QCC marker segments

HeaderInfo.QCC() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCC
 
HeaderInfo.QCD - Class in jj2000.j2k.codestream

Internal class holding information found in the QCD marker segments

HeaderInfo.QCD() - Constructor for class jj2000.j2k.codestream.HeaderInfo.QCD
 
HeaderInfo.RGN - Class in jj2000.j2k.codestream

Internal class holding information found in the RGN marker segments

HeaderInfo.RGN() - Constructor for class jj2000.j2k.codestream.HeaderInfo.RGN
 
HeaderInfo.SIZ - Class in jj2000.j2k.codestream

Internal class holding information found in the SIZ marker segment

HeaderInfo.SIZ() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SIZ
 
HeaderInfo.SOT - Class in jj2000.j2k.codestream

Internal class holding information found in the SOt marker segments

HeaderInfo.SOT() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SOT
 
HeaderRecord - Class in loci.poi.hssf.record

Title:        Header Record

HeaderRecord() - Constructor for class loci.poi.hssf.record.HeaderRecord
 
HeaderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HeaderRecord

Constructs an Header record and sets its fields appropriately.

headerValid - Variable in class loci.formats.in.SDTInfo
 
height - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The image's height in pixels.

height - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
height - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
height - Variable in class loci.common.Region
 
height - Variable in class loci.formats.codec.CodecOptions

Height, in pixels, of the image.

height - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
 
height - Variable in class loci.formats.in.SDTInfo
 
height - Variable in class loci.formats.tools.AmiraParameters
 
HELIOS_TAG - Static variable in class loci.formats.in.FEITiffReader
 
HELP_MENU - Static variable in class loci.plugins.shortcut.ShortcutPanel

Name of the 'About Plugins' submenu.

HexDump - Class in loci.poi.util

dump data in hexadecimal format; derived from a HexDump utility I
 wrote in June 2001.

HexRead - Class in loci.poi.util

Utilities to read hex from files.

HexRead() - Constructor for class loci.poi.util.HexRead
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.LIME
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PINK
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.RED
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TAN
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE
 
hexString - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW
 
hFilter - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The horizontal analysis filter used to decompose this
        subband.

hFilter - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The horizontal analysis filter used to recompose this subband,
        from its childs.

hh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child HH

HIDE_ALL - Static variable in class loci.poi.hssf.record.HideObjRecord
 
HideObjRecord - Class in loci.poi.hssf.record

Title:        Hide Object Record

HideObjRecord() - Constructor for class loci.poi.hssf.record.HideObjRecord
 
HideObjRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HideObjRecord

Constructs an HideObj record and sets its fields appropriately.

HIGH_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
HIS_MAGIC_STRING - Static variable in class loci.formats.in.HISReader
 
HISReader - Class in loci.formats.in

HISReader is the file format reader for Hamamatsu .his files.

HISReader() - Constructor for class loci.formats.in.HISReader

Constructs a new Hamamatsu .his reader.

HISTOLOGY_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the histology domain.

HISTORY_MASK - Static variable in class loci.poi.hssf.record.BOFRecord

suggested default for a normal sheet (0x41)

hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
hit(Rectangle, Shape, boolean) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
 
HitachiReader - Class in loci.formats.in

HitachiReader is the file format reader for S-4800 files.

HitachiReader() - Constructor for class loci.formats.in.HitachiReader

Constructs a new Hitachi reader.

hitClip(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
 
hl - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child HL

Holder - Class in mdbtools.libmdb
 
Holder() - Constructor for class mdbtools.libmdb.Holder
 
HORIZONTAL_ALIGNMENT_BOTTOM - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_ALIGNMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_ALIGNMENT_JUSTIFY - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_ALIGNMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord
 
HORIZONTAL_SID - Static variable in class loci.poi.hssf.record.PageBreakRecord
 
HORIZONTAL_TEXT_ALIGNMENT_CENTERED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HORIZONTAL_TEXT_ALIGNMENT_JUSTIFIED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HORIZONTAL_TEXT_ALIGNMENT_LEFT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HORIZONTAL_TEXT_ALIGNMENT_RIGHT_ALIGNED - Static variable in class loci.poi.hssf.record.TextObjectBaseRecord
 
HorizontalPageBreakRecord - Class in loci.poi.hssf.record

HorizontalPageBreak record that stores page breaks at rows

HorizontalPageBreakRecord() - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord
 
HorizontalPageBreakRecord(short) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord
 
HorizontalPageBreakRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.HorizontalPageBreakRecord
 
horz - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white horizontal mode table.

horzMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Horizontal mode table.

HOST_COMPUTER - Static variable in class loci.formats.tiff.IFD
 
HPSFException - Exception in loci.poi.hpsf

This exception is the superclass of all other checked exceptions thrown
 in this package.

HPSFException() - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException.

HPSFException(String) - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException with a message string.

HPSFException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFException

Creates a new HPSFException with a reason.

HPSFException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFException

Creates an HPSFException with a message string and a
 reason.

HPSFRuntimeException - Exception in loci.poi.hpsf

This exception is the superclass of all other unchecked
 exceptions thrown in this package.

HPSFRuntimeException() - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException.

HPSFRuntimeException(String) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a message
 string.

HPSFRuntimeException(Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a
 reason.

HPSFRuntimeException(String, Throwable) - Constructor for exception loci.poi.hpsf.HPSFRuntimeException

Creates a new HPSFRuntimeException with a message
 string and a reason.

HRDGDFReader - Class in loci.formats.in

HRDGDFReader is the file format reader for the Gridded Data Format used
 by NOAA's Hurricane Research Division.

HRDGDFReader() - Constructor for class loci.formats.in.HRDGDFReader

Constructs a new Gridded Data Format reader.

HSSF - Class in loci.poi.hssf.dev

File for HSSF testing/examples

 THIS IS NOT THE MAIN HSSF FILE!!  This is a util for testing functionality.

HSSF(String) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - creates an HSSFStream from an InputStream.

HSSF(String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - given a filename this outputs a sample sheet with just
 a set of rows/cells.

HSSF(String, String, boolean) - Constructor for class loci.poi.hssf.dev.HSSF

Constructor HSSF - takes in file - attempts to read it then reconstruct it

HSSFAnchor - Class in loci.poi.hssf.usermodel

An anchor is what specifics the position of a shape within a client object
 or within another containing shape.

HSSFAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor
 
HSSFAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFAnchor
 
HSSFCell - Class in loci.poi.hssf.usermodel

High level representation of a cell in a row of a spreadsheet.

HSSFCell(Workbook, Sheet, int, short) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates new Cell - Should only be called by HSSFRow.

HSSFCell(Workbook, Sheet, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates new Cell - Should only be called by HSSFRow.

HSSFCell(Workbook, Sheet, int, CellValueRecordInterface) - Constructor for class loci.poi.hssf.usermodel.HSSFCell

Creates an HSSFCell from a CellValueRecordInterface.

HSSFCellStyle - Class in loci.poi.hssf.usermodel

High level representation of the style of a cell in a sheet of a workbook.

HSSFCellStyle(short, ExtendedFormatRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFCellStyle

Creates new HSSFCellStyle why would you want to do this??

HSSFChildAnchor - Class in loci.poi.hssf.usermodel
 
HSSFChildAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor
 
HSSFChildAnchor(int, int, int, int) - Constructor for class loci.poi.hssf.usermodel.HSSFChildAnchor
 
HSSFClientAnchor - Class in loci.poi.hssf.usermodel

A client anchor is attached to an excel worksheet.

HSSFClientAnchor() - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor

Creates a new client anchor and defaults all the anchor positions to 0.

HSSFClientAnchor(int, int, int, int, short, int, short, int) - Constructor for class loci.poi.hssf.usermodel.HSSFClientAnchor

Creates a new client anchor and sets the top-left and bottom-right
 coordinates of the anchor.

HSSFColor - Class in loci.poi.hssf.util

Intends to provide support for the very evil index to triplet issue and
 will likely replace the color contants interface for HSSF 2.0.

HSSFColor() - Constructor for class loci.poi.hssf.util.HSSFColor

Creates a new instance of HSSFColor

HSSFColor.AQUA - Class in loci.poi.hssf.util

Class AQUA

HSSFColor.AQUA() - Constructor for class loci.poi.hssf.util.HSSFColor.AQUA
 
HSSFColor.AUTOMATIC - Class in loci.poi.hssf.util

Special Default/Normal/Automatic color.

HSSFColor.AUTOMATIC() - Constructor for class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
HSSFColor.BLACK - Class in loci.poi.hssf.util

Class BLACK

HSSFColor.BLACK() - Constructor for class loci.poi.hssf.util.HSSFColor.BLACK
 
HSSFColor.BLUE - Class in loci.poi.hssf.util

Class BLUE

HSSFColor.BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE
 
HSSFColor.BLUE_GREY - Class in loci.poi.hssf.util

Class BLUE_GREY

HSSFColor.BLUE_GREY() - Constructor for class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
HSSFColor.BRIGHT_GREEN - Class in loci.poi.hssf.util

Class BRIGHT_GREEN

HSSFColor.BRIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
HSSFColor.BROWN - Class in loci.poi.hssf.util

Class BROWN

HSSFColor.BROWN() - Constructor for class loci.poi.hssf.util.HSSFColor.BROWN
 
HSSFColor.CORAL - Class in loci.poi.hssf.util

Class CORAL

HSSFColor.CORAL() - Constructor for class loci.poi.hssf.util.HSSFColor.CORAL
 
HSSFColor.CORNFLOWER_BLUE - Class in loci.poi.hssf.util

Class CORNFLOWER_BLUE

HSSFColor.CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
HSSFColor.DARK_BLUE - Class in loci.poi.hssf.util

Class DARK_BLUE

HSSFColor.DARK_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
HSSFColor.DARK_GREEN - Class in loci.poi.hssf.util

Class DARK_GREEN

HSSFColor.DARK_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
HSSFColor.DARK_RED - Class in loci.poi.hssf.util

Class DARK_RED

HSSFColor.DARK_RED() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_RED
 
HSSFColor.DARK_TEAL - Class in loci.poi.hssf.util

Class DARK_TEAL

HSSFColor.DARK_TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
HSSFColor.DARK_YELLOW - Class in loci.poi.hssf.util

Class DARK_YELLOW

HSSFColor.DARK_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
HSSFColor.GOLD - Class in loci.poi.hssf.util

Class GOLD

HSSFColor.GOLD() - Constructor for class loci.poi.hssf.util.HSSFColor.GOLD
 
HSSFColor.GREEN - Class in loci.poi.hssf.util

Class GREEN

HSSFColor.GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.GREEN
 
HSSFColor.GREY_25_PERCENT - Class in loci.poi.hssf.util

Class GREY_25_PERCENT

HSSFColor.GREY_25_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
HSSFColor.GREY_40_PERCENT - Class in loci.poi.hssf.util

Class GREY_40_PERCENT

HSSFColor.GREY_40_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
HSSFColor.GREY_50_PERCENT - Class in loci.poi.hssf.util

Class GREY_50_PERCENT

HSSFColor.GREY_50_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
HSSFColor.GREY_80_PERCENT - Class in loci.poi.hssf.util

Class GREY_80_PERCENT

HSSFColor.GREY_80_PERCENT() - Constructor for class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
HSSFColor.INDIGO - Class in loci.poi.hssf.util

Class INDIGO

HSSFColor.INDIGO() - Constructor for class loci.poi.hssf.util.HSSFColor.INDIGO
 
HSSFColor.LAVENDER - Class in loci.poi.hssf.util

Class LAVENDER

HSSFColor.LAVENDER() - Constructor for class loci.poi.hssf.util.HSSFColor.LAVENDER
 
HSSFColor.LEMON_CHIFFON - Class in loci.poi.hssf.util

Class LEMON_CHIFFON

HSSFColor.LEMON_CHIFFON() - Constructor for class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
HSSFColor.LIGHT_BLUE - Class in loci.poi.hssf.util

Class LIGHT_BLUE

HSSFColor.LIGHT_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
HSSFColor.LIGHT_CORNFLOWER_BLUE - Class in loci.poi.hssf.util

Class LIGHT_CORNFLOWER_BLUE

HSSFColor.LIGHT_CORNFLOWER_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
HSSFColor.LIGHT_GREEN - Class in loci.poi.hssf.util

Class LIGHT_GREEN

HSSFColor.LIGHT_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
HSSFColor.LIGHT_ORANGE - Class in loci.poi.hssf.util

Class LIGHT_ORANGE

HSSFColor.LIGHT_ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
HSSFColor.LIGHT_TURQUOISE - Class in loci.poi.hssf.util

Class LIGHT_TURQUOISE

HSSFColor.LIGHT_TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
HSSFColor.LIGHT_YELLOW - Class in loci.poi.hssf.util

Class LIGHT_YELLOW

HSSFColor.LIGHT_YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
HSSFColor.LIME - Class in loci.poi.hssf.util

Class LIME

HSSFColor.LIME() - Constructor for class loci.poi.hssf.util.HSSFColor.LIME
 
HSSFColor.MAROON - Class in loci.poi.hssf.util

Class MAROON

HSSFColor.MAROON() - Constructor for class loci.poi.hssf.util.HSSFColor.MAROON
 
HSSFColor.OLIVE_GREEN - Class in loci.poi.hssf.util

Class OLIVE_GREEN

HSSFColor.OLIVE_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
HSSFColor.ORANGE - Class in loci.poi.hssf.util

Class ORANGE

HSSFColor.ORANGE() - Constructor for class loci.poi.hssf.util.HSSFColor.ORANGE
 
HSSFColor.ORCHID - Class in loci.poi.hssf.util

Class ORCHID

HSSFColor.ORCHID() - Constructor for class loci.poi.hssf.util.HSSFColor.ORCHID
 
HSSFColor.PALE_BLUE - Class in loci.poi.hssf.util

Class PALE_BLUE

HSSFColor.PALE_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
HSSFColor.PINK - Class in loci.poi.hssf.util

Class PINK

HSSFColor.PINK() - Constructor for class loci.poi.hssf.util.HSSFColor.PINK
 
HSSFColor.PLUM - Class in loci.poi.hssf.util

Class PLUM

HSSFColor.PLUM() - Constructor for class loci.poi.hssf.util.HSSFColor.PLUM
 
HSSFColor.RED - Class in loci.poi.hssf.util

Class RED

HSSFColor.RED() - Constructor for class loci.poi.hssf.util.HSSFColor.RED
 
HSSFColor.ROSE - Class in loci.poi.hssf.util

Class ROSE

HSSFColor.ROSE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROSE
 
HSSFColor.ROYAL_BLUE - Class in loci.poi.hssf.util

Class ROYAL_BLUE

HSSFColor.ROYAL_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
HSSFColor.SEA_GREEN - Class in loci.poi.hssf.util

Class SEA_GREEN

HSSFColor.SEA_GREEN() - Constructor for class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
HSSFColor.SKY_BLUE - Class in loci.poi.hssf.util

Class SKY_BLUE

HSSFColor.SKY_BLUE() - Constructor for class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
HSSFColor.TAN - Class in loci.poi.hssf.util

Class TAN

HSSFColor.TAN() - Constructor for class loci.poi.hssf.util.HSSFColor.TAN
 
HSSFColor.TEAL - Class in loci.poi.hssf.util

Class TEAL

HSSFColor.TEAL() - Constructor for class loci.poi.hssf.util.HSSFColor.TEAL
 
HSSFColor.TURQUOISE - Class in loci.poi.hssf.util

Class TURQUOISE

HSSFColor.TURQUOISE() - Constructor for class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
HSSFColor.VIOLET - Class in loci.poi.hssf.util

Class VIOLET

HSSFColor.VIOLET() - Constructor for class loci.poi.hssf.util.HSSFColor.VIOLET
 
HSSFColor.WHITE - Class in loci.poi.hssf.util

Class WHITE

HSSFColor.WHITE() - Constructor for class loci.poi.hssf.util.HSSFColor.WHITE
 
HSSFColor.YELLOW - Class in loci.poi.hssf.util

Class YELLOW

HSSFColor.YELLOW() - Constructor for class loci.poi.hssf.util.HSSFColor.YELLOW
 
HSSFComment - Class in loci.poi.hssf.usermodel

Represents a cell comment - a sticky note associated with a cell.

HSSFComment(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFComment

Construct a new comment with the given parent and anchor.

HSSFComment(NoteRecord, TextObjectRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFComment
 
HSSFDataFormat - Class in loci.poi.hssf.usermodel

Utility to identify builtin formats.

HSSFDataFormat(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFDataFormat

Construncts a new data formatter.

HSSFDateUtil - Class in loci.poi.hssf.usermodel

Contains methods for dealing with Excel dates.

HSSFErrorConstants - Interface in loci.poi.hssf.usermodel

contains constants representing Excel error codes.

HSSFEventFactory - Class in loci.poi.hssf.eventusermodel

Low level event based HSSF reader.

HSSFEventFactory() - Constructor for class loci.poi.hssf.eventusermodel.HSSFEventFactory

Creates a new instance of HSSFEventFactory

HSSFFont - Class in loci.poi.hssf.usermodel

Represents a Font used in a workbook.

HSSFFont(short, FontRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFont

Creates a new instance of HSSFFont

HSSFFooter - Class in loci.poi.hssf.usermodel

Class to read and manipulate the footer.

HSSFFooter(FooterRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFFooter

Constructor.

HSSFHeader - Class in loci.poi.hssf.usermodel

Class to read and manipulate the header.

HSSFHeader(HeaderRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFHeader

Constructor.

HSSFListener - Interface in loci.poi.hssf.eventusermodel

Interface for use with the HSSFRequest and HSSFEventFactory.

HSSFName - Class in loci.poi.hssf.usermodel

Title:        High Level Represantion of Named Range

HSSFName(Workbook, NameRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFName

Creates new HSSFName   - called by HSSFWorkbook to create a sheet from
 scratch.

HSSFObjectData - Class in loci.poi.hssf.usermodel

Represents binary object (i.e.

HSSFObjectData(ObjRecord, POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFObjectData

Constructs object data by wrapping a lower level object record.

HSSFPalette - Class in loci.poi.hssf.usermodel

Represents a workbook color palette.

HSSFPalette(PaletteRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPalette
 
HSSFPatriarch - Class in loci.poi.hssf.usermodel

The patriarch is the toplevel container for shapes in a sheet.

HSSFPicture - Class in loci.poi.hssf.usermodel

Represents a escher picture.

HSSFPictureData - Class in loci.poi.hssf.usermodel

Represents binary data stored in the file.

HSSFPolygon - Class in loci.poi.hssf.usermodel
 
HSSFPrintSetup - Class in loci.poi.hssf.usermodel

Used to modify the print setup.

HSSFPrintSetup(PrintSetupRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFPrintSetup

Constructor.

HSSFRequest - Class in loci.poi.hssf.eventusermodel

An HSSFRequest object should be constructed registering an instance or multiple
 instances of HSSFListener with each Record.sid you wish to listen for.

HSSFRequest() - Constructor for class loci.poi.hssf.eventusermodel.HSSFRequest

Creates a new instance of HSSFRequest

HSSFRichTextString - Class in loci.poi.hssf.usermodel

Rich text unicode string.

HSSFRichTextString() - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString
 
HSSFRichTextString(String) - Constructor for class loci.poi.hssf.usermodel.HSSFRichTextString
 
HSSFRow - Class in loci.poi.hssf.usermodel

High level representation of a row of a spreadsheet.

HSSFRow() - Constructor for class loci.poi.hssf.usermodel.HSSFRow
 
HSSFRow(Workbook, Sheet, int) - Constructor for class loci.poi.hssf.usermodel.HSSFRow

Creates new HSSFRow from scratch.

HSSFRow(Workbook, Sheet, RowRecord) - Constructor for class loci.poi.hssf.usermodel.HSSFRow

Creates an HSSFRow from a low level RowRecord object.

HSSFShape - Class in loci.poi.hssf.usermodel

An abstract shape.

HSSFShapeContainer - Interface in loci.poi.hssf.usermodel

An interface that indicates whether a class can contain children.

HSSFShapeGroup - Class in loci.poi.hssf.usermodel

A shape group may contain other shapes.

HSSFShapeGroup(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFShapeGroup
 
HSSFSheet - Class in loci.poi.hssf.usermodel

High level representation of a worksheet.

HSSFSheet(HSSFWorkbook) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet

Creates new HSSFSheet   - called by HSSFWorkbook to create a sheet from
 scratch.

HSSFSheet(HSSFWorkbook, Sheet) - Constructor for class loci.poi.hssf.usermodel.HSSFSheet

Creates an HSSFSheet representing the given Sheet object.

HSSFSimpleShape - Class in loci.poi.hssf.usermodel

Represents a simple shape such as a line, rectangle or oval.

HSSFTextbox - Class in loci.poi.hssf.usermodel

A textbox is a shape that may hold a rich text string.

HSSFTextbox(HSSFShape, HSSFAnchor) - Constructor for class loci.poi.hssf.usermodel.HSSFTextbox

Construct a new textbox with the given parent and anchor.

HSSFUserException - Exception in loci.poi.hssf.eventusermodel

This exception is provided as a way for API users to throw 
 exceptions from their event handling code.

HSSFUserException() - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException.

HSSFUserException(String) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a message
 string.

HSSFUserException(Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a reason.

HSSFUserException(String, Throwable) - Constructor for exception loci.poi.hssf.eventusermodel.HSSFUserException

Creates a new HSSFUserException with a message string
 and a reason.

hssfworkbook - Variable in class loci.poi.hssf.dev.HSSF
 
HSSFWorkbook - Class in loci.poi.hssf.usermodel

High level representation of a workbook.

HSSFWorkbook() - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

Creates new HSSFWorkbook from scratch (start here!)

HSSFWorkbook(Workbook) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
 
HSSFWorkbook(POIFSFileSystem) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
 
HSSFWorkbook(POIFSFileSystem, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

given a POI POIFSFileSystem object, read in its Workbook and populate the high and
 low level models.

HSSFWorkbook(RandomAccessInputStream) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook
 
HSSFWorkbook(RandomAccessInputStream, boolean) - Constructor for class loci.poi.hssf.usermodel.HSSFWorkbook

Companion to HSSFWorkbook(POIFSFileSystem), this constructs the POI filesystem around your
 inputstream.

HTM_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
 
HTML_REGEX - Static variable in class loci.formats.in.PerkinElmerReader
 
HTML_SUFFIX - Static variable in class loci.formats.in.VisitechReader
 
HuffmanCodec - Class in loci.formats.codec

This class implements Huffman decoding.

HuffmanCodec() - Constructor for class loci.formats.codec.HuffmanCodec
 
HuffmanCodecOptions - Class in loci.formats.codec

Options for compressing and decompressing Huffman data.

HuffmanCodecOptions() - Constructor for class loci.formats.codec.HuffmanCodecOptions
 




I

i - Variable in class mdbtools.libmdb.Holder
 
I18NImpl - Class in com.sun.media.imageioimpl.common

Class to simplify use of internationalization message strings.

I18NImpl() - Constructor for class com.sun.media.imageioimpl.common.I18NImpl
 
ICacheSource - Interface in loci.formats.cache

Interface for cache sources.

ICacheStrategy - Interface in loci.formats.cache

Interface for cache strategies.

iccs - Variable in class jj2000.j2k.decoder.DecoderSpecs

ICC Profiling specifications

icon - Variable in class loci.formats.gui.ImageViewer
 
icon - Variable in class loci.formats.gui.PreviewPane
 
iconLabel - Variable in class loci.formats.gui.ImageViewer
 
iconLabel - Variable in class loci.formats.gui.PreviewPane

Labels containing thumbnail and dimensional information.

iconText - Variable in class loci.formats.gui.PreviewPane
 
iconTip - Variable in class loci.formats.gui.PreviewPane
 
ICSReader - Class in loci.formats.in

ICSReader is the file format reader for ICS (Image Cytometry Standard)
 files.

ICSReader() - Constructor for class loci.formats.in.ICSReader

Constructs a new ICSReader.

ICSWriter - Class in loci.formats.out

ICSWriter is the file format writer for ICS files.

ICSWriter() - Constructor for class loci.formats.out.ICSWriter
 
id - Variable in class loci.plugins.util.BFVirtualStack
 
id - Variable in class loci.poi.ddf.EscherProperty
 
id - Variable in class loci.poi.hpsf.Property

The property's ID.

IdDialog - Class in loci.plugins.in

Bio-Formats Importer id chooser dialog box.

IdDialog(ImportProcess) - Constructor for class loci.plugins.in.IdDialog

Creates an id chooser dialog for the Bio-Formats Importer.

idLoc - Variable in class loci.plugins.in.ImportProcess
 
idName - Variable in class loci.plugins.in.ImportProcess
 
idx - Variable in class jj2000.j2k.codestream.CBlkCoordInfo

The code-block horizontal and vertical indexes

idxmap_base_pg - Variable in class mdbtools.libmdb.MdbTableDef
 
idxmap_sz - Variable in class mdbtools.libmdb.MdbTableDef
 
IEnumerationHandler - Interface in ome.xml.model.enums.handlers

An enumeration provider for making OME data model enumerations available.

IFD - Class in loci.formats.tiff

Data structure for working with TIFF Image File Directories (IFDs).

IFD() - Constructor for class loci.formats.tiff.IFD
 
IFD(IFD) - Constructor for class loci.formats.tiff.IFD
 
IFDList - Class in loci.formats.tiff

Data structure for working with a list of TIFF IFDs.

IFDList() - Constructor for class loci.formats.tiff.IFDList
 
ifds - Variable in class loci.formats.in.LeicaReader
 
ifds - Variable in class loci.formats.in.MinimalTiffReader

List of IFDs for the current TIFF.

IFDType - Enum in loci.formats.tiff

An enumeration of IFD types.

IFormatHandler - Interface in loci.formats

Interface for all biological file format readers and writers.

IFormatReader - Interface in loci.formats

Interface for all biological file format readers.

IFormatWidgets - Interface in loci.plugins.config

Interface for defining custom widgets for a specific file format reader.

IFormatWriter - Interface in loci.formats

Interface for all biological file format writers.

IISRandomAccessIO - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A wrapper for converting an ImageInputStream into a
 RandomAccessIO.

IISRandomAccessIO(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Creates a RandomAccessIO instance from the supplied
 ImageInputStream.

IJStatusEchoer - Class in loci.plugins.util

Echoes status messages to the ImageJ status bar.

IJStatusEchoer() - Constructor for class loci.plugins.util.IJStatusEchoer
 
IllegalPropertySetDataException - Exception in loci.poi.hpsf

This exception is thrown when there is an illegal value set in a
 PropertySet.

IllegalPropertySetDataException() - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(String) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalPropertySetDataException(String, Throwable) - Constructor for exception loci.poi.hpsf.IllegalPropertySetDataException

Constructor

IllegalVariantTypeException - Exception in loci.poi.hpsf

This exception is thrown if HPSF encounters a variant type that is illegal
 in the current context.

IllegalVariantTypeException(long, Object, String) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException

Constructor

IllegalVariantTypeException(long, Object) - Constructor for exception loci.poi.hpsf.IllegalVariantTypeException

Constructor

ILLUMINATION - Static variable in class loci.formats.FormatTools

Identifies the Illumination dimensional type,
 representing a dimension consisting of illuminations.

IlluminationType - Enum in ome.xml.model.enums
 
IlluminationTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for IlluminationType.

IlluminationTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.IlluminationTypeEnumHandler
 
ImaconReader - Class in loci.formats.in

ImaconReader is the file format reader for Imacon .fff (TIFF) files.

ImaconReader() - Constructor for class loci.formats.in.ImaconReader

Constructs a new Imacon reader.

image - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The final destination image.

image - Variable in class loci.formats.in.LegacyQTReader

Image containing current frame.

Image - Class in ome.xml.model
 
Image() - Constructor for class ome.xml.model.Image

Default constructor.

Image(Element, OMEModel) - Constructor for class ome.xml.model.Image

Constructs Image recursively from an XML DOM tree.

Image(Image) - Constructor for class ome.xml.model.Image

Copy constructor.

IMAGE_DESCRIPTION - Static variable in class loci.formats.tiff.IFD
 
IMAGE_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

JP2 Header boxes

IMAGE_LENGTH - Static variable in class loci.formats.tiff.IFD
 
IMAGE_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
 
IMAGE_SOURCE_DATA - Static variable in class loci.formats.in.PhotoshopTiffReader
 
IMAGE_WIDTH - Static variable in class loci.formats.tiff.IFD
 
imageCount - Variable in class loci.formats.CoreMetadata

Total number of images.

imageDescription - Variable in class loci.formats.in.BaseZeissReader
 
imageFiles - Variable in class loci.formats.in.BaseZeissReader
 
imageHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
ImageInputStreamWrapper - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is designed to wrap a ImageInputStream into
  a InputStream.


ImageInputStreamWrapper(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper

Constructs an ImageInputStreamWrapper from the provided
  ImageInputStream.

ImageIOReader - Class in loci.formats.in

ImageIOReader is the superclass for file format readers
 that use the javax.imageio package.

ImageIOReader(String, String) - Constructor for class loci.formats.in.ImageIOReader

Constructs a new ImageIOReader.

ImageIOReader(String, String[]) - Constructor for class loci.formats.in.ImageIOReader

Constructs a new ImageIOReader.

ImageIOWriter - Class in loci.formats.out

ImageIOWriter is the superclass for file format writers that use the
 javax.imageio library.

ImageIOWriter(String, String, String) - Constructor for class loci.formats.out.ImageIOWriter

Constructs an ImageIO-based writer with the given name, default suffix
 and output type (e.g., png, jpeg).

ImageIOWriter(String, String[], String) - Constructor for class loci.formats.out.ImageIOWriter

Constructs an ImageIO-based writer with the given name, default suffixes
 and output type (e.g., png, jpeg).

imageIsContiguous(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns whether the image has contiguous data across rows.

IMAGEJ_MSG - Static variable in class loci.plugins.util.LibraryChecker

Message to be displayed if ImageJ is too old for Bio-Formats plugins.

IMAGEJ_TAG - Static variable in class loci.formats.in.TiffReader
 
IMAGEJ_VERSION - Static variable in class loci.plugins.util.LibraryChecker

Minimum version of ImageJ necessary for Bio-Formats plugins.

imageLeftPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
ImagePlusReader - Class in loci.plugins.in

A high-level reader for ImagePlus objects.

ImagePlusReader() - Constructor for class loci.plugins.in.ImagePlusReader

Constructs an ImagePlusReader with the default options.

ImagePlusReader(ImportProcess) - Constructor for class loci.plugins.in.ImagePlusReader

Constructs an ImagePlusReader with the
 given complete import preparation process.

ImageProcessorReader - Class in loci.plugins.util

A low-level reader for ImageProcessor objects.

ImageProcessorReader() - Constructor for class loci.plugins.util.ImageProcessorReader

Constructs an ImageProcessorReader around a new image reader.

ImageProcessorReader(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorReader

Constructs an ImageProcessorReader with the given reader.

ImageProcessorSource - Class in loci.plugins.util

Retrieves ImageJ image processors from an image reader.

ImageProcessorSource(IFormatReader) - Constructor for class loci.plugins.util.ImageProcessorSource
 
ImageReader - Class in loci.formats

ImageReader is the master file format reader for all supported formats.

ImageReader() - Constructor for class loci.formats.ImageReader

Constructs a new ImageReader with the default
 list of reader classes from readers.txt.

ImageReader(ClassList<IFormatReader>) - Constructor for class loci.formats.ImageReader

Constructs a new ImageReader from the given list of reader classes.

ImageRef - Class in ome.xml.model
 
ImageRef() - Constructor for class ome.xml.model.ImageRef

Default constructor.

ImageRef(Element, OMEModel) - Constructor for class ome.xml.model.ImageRef

Constructs ImageRef recursively from an XML DOM tree.

ImageRef(ImageRef) - Constructor for class ome.xml.model.ImageRef

Copy constructor.

imageRX - Variable in class loci.formats.in.SDTInfo
 
imageRY - Variable in class loci.formats.in.SDTInfo
 
images - Variable in class loci.formats.gui.ImageViewer
 
imageSize - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
ImageTester - Class in loci.tests

A class for testing the AWTImageTools.makeImage(byte[], int, int, boolean)
 methods.

ImageTester(BufferedImage[][]) - Constructor for class loci.tests.ImageTester
 
ImageTools - Class in loci.formats

A utility class with convenience methods for manipulating images
 in primitive array form.

imageTopPosition - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
ImageUtil - Class in com.sun.media.imageioimpl.common
 
ImageUtil() - Constructor for class com.sun.media.imageioimpl.common.ImageUtil
 
ImageViewer - Class in loci.formats.gui

ImageViewer is a simple viewer/converter
 for the Bio-Formats image formats.

ImageViewer() - Constructor for class loci.formats.gui.ImageViewer

Constructs an image viewer.

ImageViewer(boolean) - Constructor for class loci.formats.gui.ImageViewer

Constructs an image viewer.

imageWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
ImageWriter - Class in loci.formats

ImageWriter is the master file format writer for all supported formats.

ImageWriter() - Constructor for class loci.formats.ImageWriter

Constructs a new ImageWriter with the default
 list of writer classes from writers.txt.

ImageWriter(ClassList<IFormatWriter>) - Constructor for class loci.formats.ImageWriter

Constructs a new ImageWriter from the given list of writer classes.

imageX - Variable in class loci.formats.in.SDTInfo

4 subsequent fields valid only for Camera mode
 or FIFO_IMAGE mode.

imageY - Variable in class loci.formats.in.SDTInfo
 
ImagicReader - Class in loci.formats.in

ImagicReader is the file format reader for IMAGIC files.

ImagicReader() - Constructor for class loci.formats.in.ImagicReader

Constructs a new IMAGIC reader.

ImagingEnvironment - Class in ome.xml.model
 
ImagingEnvironment() - Constructor for class ome.xml.model.ImagingEnvironment

Default constructor.

ImagingEnvironment(Element, OMEModel) - Constructor for class ome.xml.model.ImagingEnvironment

Constructs ImagingEnvironment recursively from an XML DOM tree.

ImagingEnvironment(ImagingEnvironment) - Constructor for class ome.xml.model.ImagingEnvironment

Copy constructor.

ImarisHDFReader - Class in loci.formats.in

Reader for Bitplane Imaris 5.5 (HDF) files.

ImarisHDFReader() - Constructor for class loci.formats.in.ImarisHDFReader

Constructs a new Imaris HDF reader.

ImarisReader - Class in loci.formats.in

ImarisReader is the file format reader for Bitplane Imaris files.

ImarisReader() - Constructor for class loci.formats.in.ImarisReader

Constructs a new Imaris reader.

ImarisTiffReader - Class in loci.formats.in

ImarisTiffReader is the file format reader for
 Bitplane Imaris 3 files (TIFF variant).

ImarisTiffReader() - Constructor for class loci.formats.in.ImarisTiffReader

Constructs a new Imaris TIFF reader.

IMB_C - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
IMB_IPR - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
IMB_UnkC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
IMB_VERS - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Image Header Box Fields

IMetadata - Interface in loci.formats.meta

Source code:
 Trac,
 Gitweb

IMetadata - Interface in ome.xml.meta

A proxy capable of bidirectional communication of biological image data to
 and from a particular storage medium.

IMetadataConfigurable - Interface in loci.formats

Source code:
 Trac,
 Gitweb

ImgData - Interface in jj2000.j2k.image

This interface defines methods to access image attributes (width, height,
 number of components, etc.).

ImgDataAdapter - Class in jj2000.j2k.image

This class provides a default implementation of the methods in the
 'ImgData' interface.

ImgDataAdapter(ImgData) - Constructor for class jj2000.j2k.image.ImgDataAdapter

Instantiates the ImgDataAdapter object specifying the ImgData source.

ImgDataConverter - Class in jj2000.j2k.image

This class is responsible of all data type conversions.

ImgDataConverter(BlkImgDataSrc, int) - Constructor for class jj2000.j2k.image.ImgDataConverter

Constructs a new ImgDataConverter object that operates on the specified
 source of image data.

ImgDataConverter(BlkImgDataSrc) - Constructor for class jj2000.j2k.image.ImgDataConverter

Constructs a new ImgDataConverter object that operates on the specified
 source of image data.

ImgDataJoiner - Class in jj2000.j2k.image

This class implements the ImgData interface and allows to obtain data from
 different sources.

ImgDataJoiner(BlkImgDataSrc[], int[]) - Constructor for class jj2000.j2k.image.ImgDataJoiner

Class constructor.

imgdatasrc - Variable in class jj2000.j2k.image.ImgDataAdapter

The ImgData source

imgH - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The image width on the hi-res reference grid

ImgReader - Class in jj2000.j2k.image.input

This is the generic interface to be implemented by all image file (or other
 resource) readers for different image file formats.

ImgReader() - Constructor for class jj2000.j2k.image.input.ImgReader
 
ImgReaderPGM - Class in jj2000.j2k.image.input

This class implements the ImgData interface for reading 8 bit unsigned data
 from a binary PGM file.

ImgReaderPGM(File) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified file.

ImgReaderPGM(String) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified file name.

ImgReaderPGM(RandomAccessFile) - Constructor for class jj2000.j2k.image.input.ImgReaderPGM

Creates a new PGM file reader from the specified RandomAccessFile
 object.

imgW - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The image width on the hi-res reference grid

IMinMaxStore - Interface in loci.formats.meta

Interface for consumers of minima and maxima pixel intensities across a
 given wavelength.

Immersion - Enum in ome.xml.model.enums
 
ImmersionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Immersion.

ImmersionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ImmersionEnumHandler
 
IMODReader - Class in loci.formats.in

Reader for IMOD binary files.

IMODReader() - Constructor for class loci.formats.in.IMODReader

Constructs a new IMOD reader.

importData(JComponent, Transferable) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
 
Importer - Class in loci.plugins.in

Core logic for the Bio-Formats Importer ImageJ plugin.

Importer(LociImporter) - Constructor for class loci.plugins.in.Importer
 
ImporterDialog - Class in loci.plugins.in

Abstract superclass of importer dialogs.

ImporterDialog(ImportProcess) - Constructor for class loci.plugins.in.ImporterDialog
 
ImporterMetadata - Class in loci.plugins.in

Helper class for storing original metadata key/value pairs.

ImporterMetadata(IFormatReader, ImportProcess, boolean) - Constructor for class loci.plugins.in.ImporterMetadata
 
ImporterOptions - Class in loci.plugins.in

Helper class for managing Bio-Formats Importer options.

ImporterOptions() - Constructor for class loci.plugins.in.ImporterOptions
 
ImporterPrompter - Class in loci.plugins.in

Helper class for presenting the user with dialog boxes
 for configuring importer options.

ImporterPrompter(ImportProcess) - Constructor for class loci.plugins.in.ImporterPrompter
 
ImportProcess - Class in loci.plugins.in

Manages the import preparation process.

ImportProcess() - Constructor for class loci.plugins.in.ImportProcess
 
ImportProcess(ImporterOptions) - Constructor for class loci.plugins.in.ImportProcess
 
ImportStep - Enum in loci.plugins.in

An enumeration of the steps in the import preparation process.

IMPROVISION_MAGIC_STRING - Static variable in class loci.formats.in.ImprovisionTiffReader
 
ImprovisionTiffReader - Class in loci.formats.in

ImprovisionTiffReader is the file format reader for
 Improvision TIFF files.

ImprovisionTiffReader() - Constructor for class loci.formats.in.ImprovisionTiffReader
 
ImspectorReader - Class in loci.formats.in

ImspectorReader is the file format reader for Imspector .msr files.

ImspectorReader() - Constructor for class loci.formats.in.ImspectorReader

Constructs a new Imspector reader.

in - Variable in class loci.formats.FormatReader

Current file.

in - Variable in class loci.formats.gui.ImageViewer
 
in - Variable in class loci.formats.out.TiffWriter

Input stream to use when overwriting data.

in - Variable in class loci.formats.tiff.TiffParser

Input source from which to parse TIFF data.

in - Variable in class loci.formats.tools.AmiraParameters
 
inCache - Variable in class loci.formats.cache.Cache

Whether each position is currently supposed to be cached.

InCell3000Reader - Class in loci.formats.in

InCell3000Reader is the file format reader for InCell 3000.

InCell3000Reader() - Constructor for class loci.formats.in.InCell3000Reader

Constructs a new InCell 3000 reader.

INCELL_MAGIC_STRING - Static variable in class loci.formats.in.InCellReader
 
InCellReader - Class in loci.formats.in

InCellReader is the file format reader for InCell 1000/2000 datasets.

InCellReader() - Constructor for class loci.formats.in.InCellReader

Constructs a new InCell 1000/2000 reader.

incr - Variable in class loci.formats.in.SDTInfo
 
incrementShapeCount() - Method in class loci.poi.ddf.EscherDgRecord
 
incrementShapeId() - Method in class loci.poi.ddf.EscherDggRecord.FileIdCluster
 
indentXML(String) - Static method in class loci.common.xml.XMLTools

Indents XML to be more readable.

indentXML(String, int) - Static method in class loci.common.xml.XMLTools

Indents XML by the given spacing to be more readable.

indentXML(String, boolean) - Static method in class loci.common.xml.XMLTools

Indents XML to be more readable, avoiding any whitespace
 injection into CDATA if the preserveCData flag is set.

indentXML(String, int, boolean) - Static method in class loci.common.xml.XMLTools

Indents XML by the given spacing to be more readable, avoiding any
 whitespace injection into CDATA if the preserveCData flag is set.

index - Variable in class loci.formats.cache.CacheEvent

Relevant index to the event, if any.

index - Variable in class loci.plugins.util.SearchableWindow
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.AQUA
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.AUTOMATIC
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BLACK
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE_GREY
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.BROWN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.CORAL
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.CORNFLOWER_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_TEAL
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_YELLOW
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GOLD
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_25_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_40_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_50_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.GREY_80_PERCENT
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.INDIGO
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LAVENDER
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LEMON_CHIFFON
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_CORNFLOWER_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_ORANGE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_YELLOW
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.LIME
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.MAROON
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.OLIVE_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ORANGE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ORCHID
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.PALE_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.PINK
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.RED
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ROSE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.ROYAL_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.SEA_GREEN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.SKY_BLUE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.TAN
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.WHITE
 
index - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW
 
Index16ColorModel - Class in loci.formats.gui

ColorModel that handles 16 bits per channel lookup tables.

Index16ColorModel(int, int, short[][], boolean) - Constructor for class loci.formats.gui.Index16ColorModel
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BLUE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.BRIGHT_GREEN
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_BLUE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.DARK_RED
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.LIGHT_TURQUOISE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PINK
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.PLUM
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TEAL
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.TURQUOISE
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.VIOLET
 
index2 - Static variable in class loci.poi.hssf.util.HSSFColor.YELLOW
 
INDEX_EXTERNAL - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
index_start - Variable in class mdbtools.libmdb.MdbTableDef
 
indexed - Variable in class loci.formats.CoreMetadata

Indicates whether or not the images are stored as indexed color.

indexedAsRGB - Variable in class loci.formats.FormatReader

Whether or not MetadataStore sets C = 3 for indexed color images.

indexedToRGB(BufferedImage, boolean) - Static method in class loci.formats.gui.AWTImageTools

Converts an indexed color BufferedImage to an RGB BufferedImage.

indexedToRGB(byte[][], byte[]) - Static method in class loci.formats.ImageTools

Converts a LUT and an array of indices into an array of RGB tuples.

indexedToRGB(short[][], byte[], boolean) - Static method in class loci.formats.ImageTools

Converts a LUT and an array of indices into an array of RGB tuples.

indexOf(int[], int) - Static method in class loci.common.DataTools

Returns the index of the first occurrence of the given value in the given
 array.

indexOf(Object[], Object) - Static method in class loci.common.DataTools

Returns the index of the first occurrence of the given value in the given
 Object array.

indexOf(double) - Method in class loci.poi.util.DoubleList

Returns the index in this list of the first occurrence of the
 specified element, or -1 if this list does not contain this
 element.

indexOf(int) - Method in class loci.poi.util.IntList

Returns the index in this list of the first occurrence of the
 specified element, or -1 if this list does not contain this
 element.

indexOf(short) - Method in class loci.poi.util.ShortList

Returns the index in this list of the first occurrence of the
 specified element, or -1 if this list does not contain this
 element.

IndexRecord - Class in loci.poi.hssf.record

Title:        Index Record

IndexRecord() - Constructor for class loci.poi.hssf.record.IndexRecord
 
IndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IndexRecord

Constructs an Index record and sets its fields appropriately.

INDIVIDUAL_JARS - Static variable in class loci.formats.UpgradeChecker

Names of the individual JARs.

INFO - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

info - Variable in class loci.formats.in.OMETiffReader

Mapping from series and plane numbers to files and IFD entries.

info - Variable in class loci.formats.in.SDTInfo
 
info - Variable in class loci.formats.in.SDTReader

Object containing SDT header information.

info - Variable in class loci.plugins.prefs.Option

Documentation about the option, in HTML.

INFO - Static variable in class loci.poi.util.POILogger
 
INFO_DEFAULT - Static variable in class loci.plugins.in.MainDialog

Initial message to display in help text box.

INFO_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTInfoSubRecord
 
INFO_TABLE - Static variable in class loci.formats.in.LiFlimReader
 
infoLength - Variable in class loci.formats.in.SDTInfo

Length of the info part.

infoOffs - Variable in class loci.formats.in.SDTInfo

Offset of the info part which contains general text
 information (Title, date, time, contents etc.).

infoPane - Variable in class loci.plugins.in.MainDialog
 
infoTable - Variable in class loci.plugins.in.MainDialog
 
INI_DEFAULT - Static variable in class loci.plugins.prefs.Option

INI key indicating option's default value.

INI_INFO - Static variable in class loci.plugins.prefs.Option

INI key indicating option's info.

INI_KEY - Static variable in class loci.plugins.prefs.Option

INI key indicating option's key.

INI_LABEL - Static variable in class loci.plugins.prefs.Option

INI key indicating option's label.

INI_POSSIBLE - Static variable in class loci.plugins.prefs.StringOption

INI key indicating option's possible values.

INI_SAVE - Static variable in class loci.plugins.prefs.Option

INI key indicating whether option should be saved to prefs file.

INI_TYPE - Static variable in class loci.plugins.prefs.OptionsList

INI key indicating option's type.

IniList - Class in loci.common

A data structure containing a parsed list of INI key/value tables.

IniList() - Constructor for class loci.common.IniList
 
IniParser - Class in loci.common

A simple parser for INI configuration files.

IniParser() - Constructor for class loci.common.IniParser
 
init(String) - Method in class loci.tests.testng.FileHandleTest
 
init(String, String) - Method in class loci.tests.testng.OpenBytesPerformanceTest
 
init(String) - Method in class loci.tests.testng.SubResolutionTest
 
INIT_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil

The number of elements to copy initially in an optimized array copy

IniTable - Class in loci.common

A data structure containing a parsed list of INI key/value tables.

IniTable() - Constructor for class loci.common.IniTable
 
initBitBuf() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Initialize bit buffer machinery.

initChilds() - Method in class jj2000.j2k.wavelet.Subband

Initializes the childs of this node with the correct values.

initClass() - Method in class loci.formats.gui.LegacyQTTools

Initializes the class.

initCoreMetadata(int) - Method in class loci.formats.in.LeicaSCNReader
 
initExtraMetadata() - Method in class loci.formats.in.DeltavisionReader
 
initFile(String) - Method in class loci.formats.FileStitcher

Initializes the given file or file pattern.

initFile(String) - Method in class loci.formats.FormatReader

Initializes the given file (parsing header information, etc.).

initFile(String) - Method in class loci.formats.in.AFIReader
 
initFile(String) - Method in class loci.formats.in.AIMReader
 
initFile(String) - Method in class loci.formats.in.AliconaReader
 
initFile(String) - Method in class loci.formats.in.AmiraReader
 
initFile(String) - Method in class loci.formats.in.AnalyzeReader
 
initFile(String) - Method in class loci.formats.in.APLReader
 
initFile(String) - Method in class loci.formats.in.APNGReader
 
initFile(String) - Method in class loci.formats.in.ARFReader
 
initFile(String) - Method in class loci.formats.in.AVIReader
 
initFile(String) - Method in class loci.formats.in.BaseTiffReader
 
initFile(String) - Method in class loci.formats.in.BDReader
 
initFile(String) - Method in class loci.formats.in.BioRadGelReader
 
initFile(String) - Method in class loci.formats.in.BioRadReader
 
initFile(String) - Method in class loci.formats.in.BioRadSCNReader
 
initFile(String) - Method in class loci.formats.in.BMPReader
 
initFile(String) - Method in class loci.formats.in.BrukerReader
 
initFile(String) - Method in class loci.formats.in.BurleighReader
 
initFile(String) - Method in class loci.formats.in.CanonRawReader
 
initFile(String) - Method in class loci.formats.in.CellomicsReader
 
initFile(String) - Method in class loci.formats.in.CellSensReader
 
initFile(String) - Method in class loci.formats.in.CellVoyagerReader
 
initFile(String) - Method in class loci.formats.in.CellWorxReader
 
initFile(String) - Method in class loci.formats.in.DeltavisionReader
 
initFile(String) - Method in class loci.formats.in.DicomReader
 
initFile(String) - Method in class loci.formats.in.DNGReader
 
initFile(String) - Method in class loci.formats.in.Ecat7Reader
 
initFile(String) - Method in class loci.formats.in.EPSReader
 
initFile(String) - Method in class loci.formats.in.FakeReader
 
initFile(String) - Method in class loci.formats.in.FEIReader
 
initFile(String) - Method in class loci.formats.in.FitsReader
 
initFile(String) - Method in class loci.formats.in.FlexReader
 
initFile(String) - Method in class loci.formats.in.FujiReader
 
initFile(String) - Method in class loci.formats.in.FV1000Reader
 
initFile(String) - Method in class loci.formats.in.GatanDM2Reader
 
initFile(String) - Method in class loci.formats.in.GatanReader
 
initFile(String) - Method in class loci.formats.in.GIFReader
 
initFile(String) - Method in class loci.formats.in.HamamatsuVMSReader
 
initFile(String) - Method in class loci.formats.in.HISReader
 
initFile(String) - Method in class loci.formats.in.HitachiReader
 
initFile(String) - Method in class loci.formats.in.HRDGDFReader
 
initFile(String) - Method in class loci.formats.in.ICSReader
 
initFile(String) - Method in class loci.formats.in.ImageIOReader
 
initFile(String) - Method in class loci.formats.in.ImagicReader
 
initFile(String) - Method in class loci.formats.in.ImarisHDFReader
 
initFile(String) - Method in class loci.formats.in.ImarisReader
 
initFile(String) - Method in class loci.formats.in.ImarisTiffReader
 
initFile(String) - Method in class loci.formats.in.IMODReader
 
initFile(String) - Method in class loci.formats.in.ImspectorReader
 
initFile(String) - Method in class loci.formats.in.InCell3000Reader
 
initFile(String) - Method in class loci.formats.in.InCellReader
 
initFile(String) - Method in class loci.formats.in.INRReader
 
initFile(String) - Method in class loci.formats.in.InveonReader
 
initFile(String) - Method in class loci.formats.in.IPLabReader
 
initFile(String) - Method in class loci.formats.in.IPWReader
 
initFile(String) - Method in class loci.formats.in.IvisionReader
 
initFile(String) - Method in class loci.formats.in.JEOLReader
 
initFile(String) - Method in class loci.formats.in.JPEG2000Reader
 
initFile(String) - Method in class loci.formats.in.JPXReader
 
initFile(String) - Method in class loci.formats.in.KhorosReader
 
initFile(String) - Method in class loci.formats.in.KodakReader
 
initFile(String) - Method in class loci.formats.in.L2DReader
 
initFile(String) - Method in class loci.formats.in.LegacyND2Reader
 
initFile(String) - Method in class loci.formats.in.LegacyQTReader
 
initFile(String) - Method in class loci.formats.in.LeicaReader
 
initFile(String) - Method in class loci.formats.in.LiFlimReader
 
initFile(String) - Method in class loci.formats.in.LIFReader
 
initFile(String) - Method in class loci.formats.in.LIMReader
 
initFile(String) - Method in class loci.formats.in.MetamorphReader
 
initFile(String) - Method in class loci.formats.in.MetamorphTiffReader
 
initFile(String) - Method in class loci.formats.in.MIASReader
 
initFile(String) - Method in class loci.formats.in.MicromanagerReader
 
initFile(String) - Method in class loci.formats.in.MINCReader
 
initFile(String) - Method in class loci.formats.in.MinimalTiffReader
 
initFile(String) - Method in class loci.formats.in.MNGReader
 
initFile(String) - Method in class loci.formats.in.MolecularImagingReader
 
initFile(String) - Method in class loci.formats.in.MRCReader
 
initFile(String) - Method in class loci.formats.in.MRWReader
 
initFile(String) - Method in class loci.formats.in.NAFReader
 
initFile(String) - Method in class loci.formats.in.NativeND2Reader
 
initFile(String) - Method in class loci.formats.in.NativeQTReader
 
initFile(String) - Method in class loci.formats.in.NDPIReader
 
initFile(String) - Method in class loci.formats.in.NDPISReader
 
initFile(String) - Method in class loci.formats.in.NiftiReader
 
initFile(String) - Method in class loci.formats.in.NikonReader
 
initFile(String) - Method in class loci.formats.in.NRRDReader
 
initFile(String) - Method in class loci.formats.in.OBFReader
 
initFile(String) - Method in class loci.formats.in.OMETiffReader
 
initFile(String) - Method in class loci.formats.in.OMEXMLReader
 
initFile(String) - Method in class loci.formats.in.OpenlabRawReader
 
initFile(String) - Method in class loci.formats.in.OpenlabReader
 
initFile(String) - Method in class loci.formats.in.OperettaReader
 
initFile(String) - Method in class loci.formats.in.OxfordInstrumentsReader
 
initFile(String) - Method in class loci.formats.in.PCIReader
 
initFile(String) - Method in class loci.formats.in.PCORAWReader
 
initFile(String) - Method in class loci.formats.in.PCXReader
 
initFile(String) - Method in class loci.formats.in.PDSReader
 
initFile(String) - Method in class loci.formats.in.PerkinElmerReader
 
initFile(String) - Method in class loci.formats.in.PGMReader
 
initFile(String) - Method in class loci.formats.in.PhotoshopTiffReader
 
initFile(String) - Method in class loci.formats.in.PictReader
 
initFile(String) - Method in class loci.formats.in.PovrayReader
 
initFile(String) - Method in class loci.formats.in.PrairieReader
 
initFile(String) - Method in class loci.formats.in.PSDReader
 
initFile(String) - Method in class loci.formats.in.QuesantReader
 
initFile(String) - Method in class loci.formats.in.RHKReader
 
initFile(String) - Method in class loci.formats.in.SBIGReader
 
initFile(String) - Method in class loci.formats.in.ScanrReader
 
initFile(String) - Method in class loci.formats.in.ScreenReader
 
initFile(String) - Method in class loci.formats.in.SDTReader
 
initFile(String) - Method in class loci.formats.in.SeikoReader
 
initFile(String) - Method in class loci.formats.in.SIFReader
 
initFile(String) - Method in class loci.formats.in.SlidebookReader
 
initFile(String) - Method in class loci.formats.in.SMCameraReader
 
initFile(String) - Method in class loci.formats.in.SpiderReader
 
initFile(String) - Method in class loci.formats.in.TargaReader
 
initFile(String) - Method in class loci.formats.in.TCSReader
 
initFile(String) - Method in class loci.formats.in.TextReader
 
initFile(String) - Method in class loci.formats.in.TiffJAIReader
 
initFile(String) - Method in class loci.formats.in.TileJPEGReader
 
initFile(String) - Method in class loci.formats.in.TillVisionReader
 
initFile(String) - Method in class loci.formats.in.TopometrixReader
 
initFile(String) - Method in class loci.formats.in.TrestleReader
 
initFile(String) - Method in class loci.formats.in.UBMReader
 
initFile(String) - Method in class loci.formats.in.UnisokuReader
 
initFile(String) - Method in class loci.formats.in.VarianFDFReader
 
initFile(String) - Method in class loci.formats.in.VGSAMReader
 
initFile(String) - Method in class loci.formats.in.VisitechReader
 
initFile(String) - Method in class loci.formats.in.VolocityClippingReader
 
initFile(String) - Method in class loci.formats.in.VolocityReader
 
initFile(String) - Method in class loci.formats.in.WATOPReader
 
initFile(String) - Method in class loci.formats.in.WlzReader
 
initFile(String) - Method in class loci.formats.in.ZeissCZIReader
 
initFile(String) - Method in class loci.formats.in.ZeissLSMReader
 
initFile(String) - Method in class loci.formats.in.ZeissTIFFReader
 
initFile(String) - Method in class loci.formats.in.ZeissZVIReader
 
initFile(String) - Method in class loci.formats.in.ZipReader
 
initFileMain(String) - Method in class loci.formats.in.BaseZeissReader
 
INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFRow
 
INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFSheet

Used for compile-time optimization.

INITIAL_CAPACITY - Static variable in class loci.poi.hssf.usermodel.HSSFWorkbook

used for compile-time performance/memory optimization.

INITIAL_LENGTH - Static variable in class loci.common.ByteArrayHandle

Initial length of a new file.

initialiseCRC() - Method in class loci.common.CRC
 
initialize(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
 
initialize() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator

Initializes the layers array.

initialize() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

Initializes the rate allocation points, taking into account header
 overhead and such.

initialize(String, int) - Method in class loci.formats.codec.JPEGTileDecoder
 
initialize(RandomAccessInputStream, int) - Method in class loci.formats.codec.JPEGTileDecoder
 
initialize(RandomAccessInputStream, int, int, int) - Method in class loci.formats.codec.JPEGTileDecoder
 
initialize(RandomAccessInputStream, int, int) - Method in interface loci.formats.services.JPEGTurboService
 
initialize(RandomAccessInputStream, int, int) - Method in class loci.formats.services.JPEGTurboServiceImpl
 
initialize(InputStream) - Method in interface loci.formats.services.LuraWaveService

Wraps lwfDecoder.lwfDecoder(InputStream, String, String).

initialize(InputStream) - Method in class loci.formats.services.LuraWaveServiceImpl
 
initialize(String) - Method in interface loci.formats.services.MDBService

Prepare the given .mdb file for reading.

initialize(String) - Method in class loci.formats.services.MDBServiceImpl
 
initialize(String) - Method in interface loci.formats.services.MetakitService
 
initialize(RandomAccessInputStream) - Method in interface loci.formats.services.MetakitService
 
initialize(String) - Method in class loci.formats.services.MetakitServiceImpl
 
initialize(RandomAccessInputStream) - Method in class loci.formats.services.MetakitServiceImpl
 
initialize(String) - Method in interface loci.formats.services.POIService

Construct a new POI filesystem around the given file.

initialize(RandomAccessInputStream) - Method in interface loci.formats.services.POIService

Construct a new POI filesystem around the given stream.

initialize(String) - Method in class loci.formats.services.POIServiceImpl
 
initialize(RandomAccessInputStream) - Method in class loci.formats.services.POIServiceImpl
 
initialize(String) - Method in class loci.poi.util.CommonsLogger
 
initialize(String) - Method in class loci.poi.util.NullLogger
 
initialize(String) - Method in class loci.poi.util.POILogger
 
initialize(String) - Method in class loci.poi.util.SystemOutLogger
 
initialized - Variable in class loci.formats.FormatWriter

Whether each plane in each series of the current file has been
 prepped for writing.

initialized - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating this class has been initialized.

initializeFromStream(ImageInputStream, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor

Initialize the string table.

initializeStringTable() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil

Initialize the string table.

initImage() - Method in class loci.formats.in.ImageIOReader
 
initJPEGWriter(boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Initializes the JPEGWriter and JPEGParam instance variables.

initLicenseCode() - Static method in class loci.plugins.util.LuraWave

Reads LuraWave license code from ImageJ preferences, if available.

initMetadata() - Method in class loci.formats.in.BaseTiffReader

Populates the metadata hashtable and metadata store.

initMetadata() - Method in class loci.formats.in.GelReader
 
initMetadata(int) - Method in class loci.formats.in.ZeissLSMReader
 
initMetadataStore() - Method in class loci.formats.in.BaseTiffReader

Populates the metadata store using the data parsed in
 BaseTiffReader.initStandardMetadata() along with some further parsing done in
 the method itself.

initMetadataStore() - Method in class loci.formats.in.FEITiffReader
 
initMetadataStore() - Method in class loci.formats.in.FluoviewReader
 
initMetadataStore() - Method in class loci.formats.in.ImaconReader
 
initMetadataStore() - Method in class loci.formats.in.ImprovisionTiffReader
 
initMetadataStore() - Method in class loci.formats.in.JPKReader
 
initMetadataStore() - Method in class loci.formats.in.LeicaSCNReader
 
initMetadataStore() - Method in class loci.formats.in.LEOReader
 
initMetadataStore() - Method in class loci.formats.in.NDPIReader
 
initMetadataStore() - Method in class loci.formats.in.NikonElementsTiffReader
 
initMetadataStore() - Method in class loci.formats.in.NikonTiffReader
 
initMetadataStore() - Method in class loci.formats.in.PyramidTiffReader
 
initMetadataStore() - Method in class loci.formats.in.SimplePCITiffReader
 
initMetadataStore() - Method in class loci.formats.in.SISReader
 
initMetadataStore() - Method in class loci.formats.in.SlidebookTiffReader
 
initMetadataStore() - Method in class loci.formats.in.SVSReader
 
initMetadataStore() - Method in class loci.formats.in.TiffReader
 
initMetadataStore() - Method in class loci.formats.in.TrestleReader
 
initMinMax() - Method in class loci.formats.MinMaxCalculator

Ensures internal min/max variables are initialized properly.

initPixels() - Method in class loci.formats.in.DeltavisionReader
 
initProgressWatch(int, int, String) - Method in interface jj2000.j2k.util.ProgressWatch

Initialize the progress watching process

initReader(int, int) - Method in class loci.formats.FileStitcher
 
initStandardMetadata() - Method in class loci.formats.in.BaseTiffReader

Parses standard metadata.

initStandardMetadata() - Method in class loci.formats.in.DNGReader
 
initStandardMetadata() - Method in class loci.formats.in.FEITiffReader
 
initStandardMetadata() - Method in class loci.formats.in.FluoviewReader
 
initStandardMetadata() - Method in class loci.formats.in.ImaconReader
 
initStandardMetadata() - Method in class loci.formats.in.ImprovisionTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.JPKReader
 
initStandardMetadata() - Method in class loci.formats.in.LeicaSCNReader
 
initStandardMetadata() - Method in class loci.formats.in.LEOReader
 
initStandardMetadata() - Method in class loci.formats.in.MetamorphReader
 
initStandardMetadata() - Method in class loci.formats.in.NDPIReader
 
initStandardMetadata() - Method in class loci.formats.in.NikonElementsTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.NikonReader
 
initStandardMetadata() - Method in class loci.formats.in.NikonTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.PyramidTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.SEQReader
 
initStandardMetadata() - Method in class loci.formats.in.SimplePCITiffReader
 
initStandardMetadata() - Method in class loci.formats.in.SISReader
 
initStandardMetadata() - Method in class loci.formats.in.SlidebookTiffReader
 
initStandardMetadata() - Method in class loci.formats.in.SVSReader
 
initStandardMetadata() - Method in class loci.formats.in.TiffReader
 
initStandardMetadata() - Method in class loci.formats.in.TrestleReader
 
initSubbandsFields(int, SubbandSyn) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Initialises subbands fields, such as code-blocks dimension and number
 of magnitude bits, in the subband tree.

initTileComp(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Load options, length calculation type and termination type for
 each tile-component.

initVars(String) - Method in class loci.formats.in.BaseZeissReader
 
initVars(String) - Method in class loci.formats.in.ZeissTIFFReader
 
initVars(String) - Method in class loci.formats.in.ZeissZVIReader
 
IniWriter - Class in loci.common

A simple writer for INI configuration files.

IniWriter() - Constructor for class loci.common.IniWriter
 
INK_NAMES - Static variable in class loci.formats.tiff.IFD
 
INK_SET - Static variable in class loci.formats.tiff.IFD
 
INK_SET_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "InkSet" tag.

INK_SET_NOT_CMYK - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "InkSet" tag.

INNER - Static variable in class mdbtools.dbengine.sql.Join
 
inputOrder - Variable in class loci.formats.SwappableMetadata

Order in which dimensions are stored.

InputStreamAdapter - Class in com.sun.media.imageioimpl.plugins.clib
 
InputStreamAdapter(ImageInputStream) - Constructor for class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
INRReader - Class in loci.formats.in

INRReader is the file format reader for INR files.

INRReader() - Constructor for class loci.formats.in.INRReader

Constructs a new INR reader.

insert(ImageProcessor, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
insertBefore(Node, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
 
insertCell(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
 
insertChartRecord() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook

Test only.

insertChartRecords(List) - Method in class loci.poi.hssf.usermodel.HSSFSheet
 
insertColumn(ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Inserts a column into the aggregate (at the end of the list).

insertColumn(int, ColumnInfoRecord) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate

Inserts a column into the aggregate (at the position specified
 by idx.

insertNode(PaletteBuilder.ColorNode, Color, int) - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
 
insertRow(RowRecord) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
insertSST() - Method in class loci.poi.hssf.model.Workbook

use this function to add a Shared String Table to an existing sheet (say
 generated by a different java api) without an sst....

insertUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
 
inspectViewable(Object, boolean, int, String) - Static method in class loci.poi.poifs.dev.POIFSViewEngine

Inspect an object that may be viewable, and drill down if told
 to

install(String, String) - Method in class loci.formats.UpgradeChecker

Download and install a JAR file from the given URL.

install(String) - Static method in class loci.plugins.Updater

Install the tools bundle which can be retrieved from the specified path.

installIndividualJars(String, String) - Method in class loci.formats.UpgradeChecker

Download and install all of the individual JAR files into the given
 directory.

InstallWizard - Class in loci.plugins.config

A wizard for walking users through installation of third party
 libraries and plugins used by the Bio-Formats plugins.

InstallWizard() - Constructor for class loci.plugins.config.InstallWizard
 
Instrument - Class in ome.xml.model
 
Instrument() - Constructor for class ome.xml.model.Instrument

Default constructor.

Instrument(Element, OMEModel) - Constructor for class ome.xml.model.Instrument

Constructs Instrument recursively from an XML DOM tree.

Instrument(Instrument) - Constructor for class ome.xml.model.Instrument

Copy constructor.

InstrumentRef - Class in ome.xml.model
 
InstrumentRef() - Constructor for class ome.xml.model.InstrumentRef

Default constructor.

InstrumentRef(Element, OMEModel) - Constructor for class ome.xml.model.InstrumentRef

Constructs InstrumentRef recursively from an XML DOM tree.

InstrumentRef(InstrumentRef) - Constructor for class ome.xml.model.InstrumentRef

Copy constructor.

INT16 - Static variable in class loci.formats.FormatTools

Identifies the INT16 data type used to store pixel values.

INT32 - Static variable in class loci.formats.FormatTools

Identifies the INT32 data type used to store pixel values.

INT8 - Static variable in class loci.formats.FormatTools

Identifies the INT8 data type used to store pixel values.

INT_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
 
intArraySet(int[], int) - Static method in class jj2000.j2k.util.ArrayUtil

Reinitializes an int array to the given value in an optimized way.

IntegerField - Class in loci.poi.util

representation of an integer (32-bit) field at a fixed location
 within a byte array

IntegerField(int) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing
 byte array

IntegerField(int, int) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing
 byte array and initialize its value

IntegerField(int, byte[]) - Constructor for class loci.poi.util.IntegerField

Construct the IntegerField with its offset into its containing
 byte array and initialize its value from its byte array

IntegerField(int, int, byte[]) - Constructor for class loci.poi.util.IntegerField

construct the IntegerField with its offset into its containing
 byte array, initialize its value, and write the value to a byte
 array

IntegerSpec - Class in jj2000.j2k

This class extends ModuleSpec and is responsible of Integer
 specifications for each tile-component.

IntegerSpec(int, int, byte) - Constructor for class jj2000.j2k.IntegerSpec

Constructs a new 'IntegerSpec' for the specified number of
 tiles and components and with allowed type of
 specifications.

IntegerSpec(int, int, byte, J2KImageWriteParamJava, String, String) - Constructor for class jj2000.j2k.IntegerSpec

Constructs a new 'IntegerSpec' for the specified number of
 tiles and components, the allowed specifications type
 instance.

INTELLECTUAL_PROPERTY_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
intensity - Variable in class loci.formats.in.SDTReader

Whether to combine lifetime bins into single intensity image planes.

intent - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
intercept(List<IMethodInstance>, ITestContext) - Method in class loci.tests.testng.OrderingListener
 
InterfaceEndRecord - Class in loci.poi.hssf.record

Title: Interface End Record

InterfaceEndRecord() - Constructor for class loci.poi.hssf.record.InterfaceEndRecord
 
InterfaceEndRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceEndRecord

Constructs an InterfaceEnd record and sets its fields appropriately.

InterfaceHdrRecord - Class in loci.poi.hssf.record

Title: Interface Header Record

InterfaceHdrRecord() - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord
 
InterfaceHdrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.InterfaceHdrRecord

Constructs an Codepage record and sets its fields appropriately.

interlaced - Variable in class loci.formats.codec.MJPBCodecOptions

Indicates whether or not channels are interlaced.

interlaceFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
interleaved - Variable in class loci.formats.codec.CodecOptions

Indicates whether or not channels are interleaved.

interleaved - Variable in class loci.formats.CoreMetadata

True if channels are stored RGBRGBRGB...; false if channels are stored
 RRR...GGG...BBB...

interleaved - Variable in class loci.formats.FormatWriter

Whether the channels in an RGB image are interleaved.

INTEROPERABILITY_INDEX_R98 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

A value to be used with the "InteroperabilityIndex" tag.

INTEROPERABILITY_INDEX_THM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet

A value to be used with the "InteroperabilityIndex" tag.

interpolate(short[], byte[], int[], int, int, boolean) - Static method in class loci.formats.ImageTools
 
intersection(Region) - Method in class loci.common.Region

Returns a Region representing the intersection of this Region with the
 given Region.

IntersectionPtg - Class in loci.poi.hssf.record.formula
 
IntersectionPtg() - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg
 
IntersectionPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntersectionPtg
 
intersects(Region) - Method in class loci.common.Region

Returns true if this region intersects the given region.

intFormat(int, int) - Static method in class loci.formats.in.MetamorphReader

Formats an integer value with leading 0s if needed.

intFormatMax(int, int) - Static method in class loci.formats.in.MetamorphReader

Formats an integer with leading 0 using maximum sequence number.

IntList - Class in loci.poi.util

A List of int's; as full an implementation of the java.util.List
 interface as possible, with an eye toward minimal creation of
 objects

 the mimicry of List is as follows:
 
  if possible, operations designated 'optional' in the List
      interface are attempted
  wherever the List interface refers to an Object, substitute
      int
  wherever the List interface refers to a Collection or List,
      substitute IntList
 

 the mimicry is not perfect, however:
 
  operations involving Iterators or ListIterators are not
      supported
  remove(Object) becomes removeValue to distinguish it from
      remove(int index)
  subList is not supported
 

IntList() - Constructor for class loci.poi.util.IntList

create an IntList of default size

IntList(int) - Constructor for class loci.poi.util.IntList
 
IntList(IntList) - Constructor for class loci.poi.util.IntList

create a copy of an existing IntList

IntList(int, int) - Constructor for class loci.poi.util.IntList

create an IntList with a predefined initial size

IntList2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of integers.

IntList2d() - Constructor for class loci.poi.util.IntList2d
 
IntMapper - Class in loci.poi.util

A List of objects that are indexed AND keyed by an int; also allows for getting
 the index of a value in the list

IntMapper() - Constructor for class loci.poi.util.IntMapper

create an IntMapper of default size

IntMapper(int) - Constructor for class loci.poi.util.IntMapper
 
IntPtg - Class in loci.poi.hssf.record.formula

Integer (short intger)
 Stores a (java) short value in a formula

IntPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.IntPtg
 
IntPtg(String) - Constructor for class loci.poi.hssf.record.formula.IntPtg
 
intsToBytes(int[], boolean) - Static method in class loci.common.DataTools

Translates an array of int values into an array of byte values.

intToBytes(int, boolean) - Static method in class loci.common.DataTools

Translates the int value into an array of four bytes.

intValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as an int.

INV_ICT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for the Inverse Irreversible Component
        Transformation (INV_ICT).

INV_RCT - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for the Inverse Reversible Component Transformation
        (INV_RCT).

INVALID_LICENSE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl

Message to display if an invalid LuraWave license code is given.

invalidateCache() - Static method in class loci.common.CaseInsensitiveLocation

Remove (invalidate) cached content for all directories.

invalidateCache(File) - Static method in class loci.common.CaseInsensitiveLocation

Remove (invalidate) cached content for the specified directory.

InvCompTransf - Class in jj2000.j2k.image.invcomptransf

This class apply inverse component transformations to the tiles depending
 on specification read from the codestream header.

InvCompTransf(BlkImgDataSrc, DecoderSpecs, int[]) - Constructor for class jj2000.j2k.image.invcomptransf.InvCompTransf

Constructs a new ForwCompTransf object that operates on the
 specified source of image data.

InveonReader - Class in loci.formats.in

InveonReader is the file format reader for Inveon files.

InveonReader() - Constructor for class loci.formats.in.InveonReader

Constructs a new Inveon reader.

inverseFill - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Whether bits are inserted in reverse order (TIFF FillOrder 2).

InverseWT - Class in jj2000.j2k.wavelet.synthesis

This abstract class extends the WaveletTransform one with the specifics of
 inverse wavelet transforms.

InverseWT(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InverseWT

Initializes this object with the given source of wavelet
 coefficients.

invert() - Method in class loci.plugins.util.RecordedImageProcessor
 
InvertedCMYKColorSpace - Class in com.sun.media.imageioimpl.common

Singleton class representing a simple, mathematically defined
 inverted CMYK color space.

invertLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
InvWT - Interface in jj2000.j2k.wavelet.synthesis

This interface extends the WaveletTransform with the
 specifics of inverse wavelet transforms.

InvWTAdapter - Class in jj2000.j2k.wavelet.synthesis

This class provides default implementation of the methods in the 'InvWT'
 interface.

InvWTAdapter(MultiResImgData, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Instantiates the 'InvWTAdapter' object using the specified
 'MultiResImgData' source.

InvWTData - Interface in jj2000.j2k.wavelet.synthesis

This interface extends the MultiResImgData interface with the methods that
 are necessary for inverse wavelet data (i.e.

InvWTFull - Class in jj2000.j2k.wavelet.synthesis

This class implements the InverseWT with the full-page approach for int and
 float data.

InvWTFull(CBlkWTDataSrcDec, DecoderSpecs) - Constructor for class jj2000.j2k.wavelet.synthesis.InvWTFull

Initializes this object with the given source of wavelet
 coefficients.

IOTester - Class in loci.tests

A class for testing RandomAccessInputStream's
 efficiency in various cases.

IOTester() - Constructor for class loci.tests.IOTester
 
IOUtils - Class in loci.poi.util
 
IPLabReader - Class in loci.formats.in

IPLabReader is the file format reader for IPLab (.IPL) files.

IPLabReader() - Constructor for class loci.formats.in.IPLabReader

Constructs a new IPLab reader.

IPW_MAGIC_BYTES - Static variable in class loci.formats.in.IPWReader
 
IPWReader - Class in loci.formats.in

IPWReader is the file format reader for Image-Pro Workspace (IPW) files.

IPWReader() - Constructor for class loci.formats.in.IPWReader

Constructs a new IPW reader.

IRandomAccess - Interface in loci.common

Interface for random access into structures (e.g., files or arrays).

is - Variable in class loci.poi.util.BlockingInputStream
 
is_fixed - Variable in class mdbtools.libmdb.MdbColumn
 
IS_GLITCHED - Static variable in class loci.plugins.prefs.OptionsDialog

Flag indicating whether to invoke workaround for AWT refresh bug.

IS_JET3(MdbHandle) - Static method in class mdbtools.libmdb.macros
 
IS_JET4(MdbHandle) - Static method in class mdbtools.libmdb.macros
 
IS_STUB - Static variable in class com.luratech.lwf.lwfDecoder
 
is_text_type(int) - Static method in class mdbtools.mdb_export
 
isAbsolute() - Method in class loci.common.Location

Tests whether or not this path name is absolute.

isAccessibilityIgnored() - Method in class loci.common.ReflectedUniverse

Deprecated.
Gets whether access modifiers (protected, private, etc.) are ignored.

isADateFormat(int, String) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a format ID and its format String, will check to see if the
  format represents a date format or not.

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord
 
isAfter(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell is after the passed in cell

isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord
 
isAfter(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord
 
isAllocated(int, int) - Method in class loci.poi.util.IntList2d
 
isAllSet(int) - Method in class loci.poi.util.BitField

Are all of the bits set or not? This is a stricter test than
 isSet, in that all of the bits in a multi-bit set must be set
 for this method to return true

isAscending() - Method in class mdbtools.dbengine.sql.OrderBy
 
isAttributeRequired(String, String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
 
isAuto() - Method in class loci.poi.hssf.record.LineFormatRecord

automatic format

isAutoBackground() - Method in class loci.poi.hssf.record.TextRecord
 
isAutoColor() - Method in class loci.poi.hssf.record.TextRecord

true = automaticly selected colour, false = user-selected

isAutofill() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

whether object uses an automatic fill style

isAutoGeneratedText() - Method in class loci.poi.hssf.record.TextRecord
 
isAutoLabelDeleted() - Method in class loci.poi.hssf.record.TextRecord
 
isAutoline() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

whether object uses an automatic line style

isAutomatic() - Method in class loci.poi.hssf.record.AreaFormatRecord

automatic formatting

isAutomaticCategoryCrossing() - Method in class loci.poi.hssf.record.ValueRangeRecord

category crossing point is automatically selected

isAutomaticMajor() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic major unit selected

isAutomaticMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic maximum value selected

isAutomaticMinimum() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic minimum value selected

isAutomaticMinor() - Method in class loci.poi.hssf.record.ValueRangeRecord

automatic minor unit selected

isAutoPlotArea() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

??

isAutoPosition() - Method in class loci.poi.hssf.record.FrameRecord

excel calculates the position automatically

isAutoPosition() - Method in class loci.poi.hssf.record.LegendRecord

automatic positioning (1=docked)

isAutorotate() - Method in class loci.poi.hssf.record.TickRecord

automatically rotate the text

isAutoscale() - Method in class loci.plugins.in.ImporterOptions
 
isAutoSeries() - Method in class loci.poi.hssf.record.LegendRecord

excel 5 only (true)

isAutoSize() - Method in class loci.poi.hssf.record.FrameRecord

excel calculates the size automatically if true

isAutoTextBackground() - Method in class loci.poi.hssf.record.TickRecord

use the quote unquote automatic color for text background

isAutoTextColor() - Method in class loci.poi.hssf.record.TickRecord

use the quote unquote automatic color for text

isAutoXPositioning() - Method in class loci.poi.hssf.record.LegendRecord

position of legend on the x axis is automatic

isAutoYPositioning() - Method in class loci.poi.hssf.record.LegendRecord

position of legend on the y axis is automatic

isBaxcel() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord
 
isBefore(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell is before the passed in cell

isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord
 
isBefore(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord
 
isBigTiff - Variable in class loci.formats.out.TiffWriter

Whether or not the output file is a BigTIFF file.

isBigTiff() - Method in class loci.formats.tiff.IFD

Gets whether this is a BigTIFF IFD.

isBigTiff() - Method in class loci.formats.tiff.TiffParser

Returns whether or not the current TIFF file contains BigTIFF data.

isBigTiff() - Method in class loci.formats.tiff.TiffSaver

Returns whether or not we are writing BigTIFF data.

isBinary(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
 
isBlipId() - Method in class loci.poi.ddf.EscherProperty
 
isBoolean() - Method in class loci.poi.hssf.record.BoolErrRecord

Indicates whether the call holds a boolean value

isBorder() - Method in class loci.poi.hssf.record.DatRecord

data table has a border

isBuiltInName() - Method in class loci.poi.hssf.record.NameRecord

Convenience Function to determine if the name is a built-in name

isBZip2File(String) - Static method in class loci.common.BZip2Handle

Returns true if the given filename is a BZip2 file.

isCached() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
isCachedFile() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
isCachedMemory() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
isCellDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Check if a cell contains a date
  Since dates are stored internally in Excel as double values 
  we infer it is a date if it is formatted as such.

isCellInternalDateFormatted(HSSFCell) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Check if a cell contains a date, checking only for internal
   excel date formats.

isCellOk(String) - Method in class loci.poi.hssf.util.RangeAddress
 
isCertain() - Method in class loci.formats.AxisGuesser

Gets whether the guesser is confident that all axes are correct.

isChartTypeManuallyFormatted() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Has the chart type been manually formatted?

isColAbsolute() - Method in class loci.poi.hssf.util.CellReference
 
isColorLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
isColorModeColorized() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeComposite() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeCustom() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeDefault() - Method in class loci.plugins.in.ImporterOptions
 
isColorModeGrayscale() - Method in class loci.plugins.in.ImporterOptions
 
isColRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
isColRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
isColumnBroken(short) - Method in class loci.poi.hssf.model.Sheet

Queries if the specified column has a page break

isColumnBroken(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determines if there is a page break at the indicated column

isColumnGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
isColumnGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
 
isColumnHidden(short) - Method in class loci.poi.hssf.model.Sheet

Get the hidden property for a given column.

isColumnHidden(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Get the hidden state for a given column.

isCommandName() - Method in class loci.poi.hssf.record.NameRecord
 
isCompatibleRaster(Raster) - Method in class loci.formats.gui.Index16ColorModel
 
isCompatibleRaster(Raster) - Method in class loci.formats.gui.SignedColorModel
 
isCompatibleRaster(Raster) - Method in class loci.formats.gui.UnsignedIntColorModel
 
isComplex() - Method in class loci.poi.ddf.EscherProperty
 
isComplexFunction() - Method in class loci.poi.hssf.record.NameRecord
 
isCompressed() - Method in class loci.poi.ddf.EscherMetafileBlip
 
isCompressed() - Method in class loci.poi.ddf.EscherPictBlip
 
isCompressionLossless - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Whether the compression is lossless.

isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

Retrieves a value indicating whether the compression is lossless.

isCompressionLossless() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
 
isCompressionLossless - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter

Lossless flag for known compression types.

isCompSpecified(int) - Method in class jj2000.j2k.ModuleSpec

Whether or not specifications have been entered for the given
 component.

isCompTransfUsed() - Method in class jj2000.j2k.image.CompTransfSpec

Check if component transformation is used in any of the tiles.

isConcatenate() - Method in class loci.plugins.in.ImporterOptions
 
isContainerRecord() - Method in class loci.poi.ddf.EscherRecord

Determine whether this is a container record by inspecting the option
 field.

isContinueNext() - Method in class loci.poi.hssf.record.RecordInputStream

Returns true iif a Continue record is next in the excel stream

isCrossCategoryAxisAtMaximum() - Method in class loci.poi.hssf.record.ValueRangeRecord

category axis to cross at maximum value

isCrossesFarRight() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

axis crosses at the far right

isCS_sRGB() - Method in class loci.formats.gui.TwoChannelColorSpace
 
isCustomNumberFormat() - Method in class loci.poi.hssf.record.LinkedDataRecord

true if this object has a custom number format

isDataTable() - Method in class loci.poi.hssf.record.LegendRecord

1 if chart contains data table

isDataTypeOK(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if the given data type
 may be used for the data associated with this tag.

isDefaultBase() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default base unit

isDefaultCross() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default crossing point

isDefaultDateSettings() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use default date setttings for this axis

isDefaultMajor() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default major unit

isDefaultMaximum() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default maximum category

isDefaultMinimum() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default minimum category

isDefaultMinorUnit() - Method in class loci.poi.hssf.record.AxisOptionsRecord

use the default minor unit

isDefaultPlotDimensions() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Indicates that the default area dimensions should be used.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.DirectoryNode

extensions use this method to verify internal rules regarding
 deletion of the underlying store.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.DocumentNode

extensions use this method to verify internal rules regarding
 deletion of the underlying store.

isDeleteOK() - Method in class loci.poi.poifs.filesystem.EntryNode

extensions use this method to verify internal rules regarding
 deletion of the underlying store.

isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer

Returns true if the quantizer of given tile-component uses derived
 quantization step sizes.

isDerived(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns true if given tile-component uses derived quantization step
 sizes.

isDerived(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec

Returns true if given tile-component uses derived quantization step
 size.

isDirectory() - Method in class loci.common.Location

Returns true if this pathname exists and represents a directory.

isDirectory() - Method in class loci.poi.poifs.property.DirectoryProperty
 
isDirectory() - Method in class loci.poi.poifs.property.DocumentProperty
 
isDirectory() - Method in class loci.poi.poifs.property.Property
 
isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.DirectoryNode

is this a DirectoryEntry?

isDirectoryEntry() - Method in interface loci.poi.poifs.filesystem.Entry

is this a DirectoryEntry?

isDirectoryEntry() - Method in class loci.poi.poifs.filesystem.EntryNode

is this a DirectoryEntry?

isDisplayAsPercentage() - Method in class loci.poi.hssf.record.AreaRecord

results displayed as percentages

isDisplayAsPercentage() - Method in class loci.poi.hssf.record.BarRecord

display chart values as a percentage

isDisplayFormulas() - Method in class loci.poi.hssf.model.Sheet

Returns if formulas are displayed.

isDisplayFormulas() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if formulas are displayed.

isDisplayGridlines() - Method in class loci.poi.hssf.model.Sheet

Returns if gridlines are displayed.

isDisplayGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if gridlines are displayed.

isDisplayRowColHeadings() - Method in class loci.poi.hssf.model.Sheet

Returns if RowColHeadings are displayed.

isDisplayRowColHeadings() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns if RowColHeadings are displayed.

isDocumentEntry() - Method in class loci.poi.poifs.filesystem.DocumentNode

is this a DocumentEntry?

isDocumentEntry() - Method in interface loci.poi.poifs.filesystem.Entry

is this a DocumentEntry?

isDocumentEntry() - Method in class loci.poi.poifs.filesystem.EntryNode

is this a DocumentEntry?

isDocumentSummaryInformation() - Method in class loci.poi.hpsf.PropertySet

Checks whether this PropertySet is a Document
 Summary Information.

isDocumentSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet
 
isDoNotSizeWithWindow() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Do not size the chart when the window changes size

isDrawTicks() - Method in class loci.poi.hssf.record.LineFormatRecord

draw tick marks

isEmpty() - Method in interface loci.poi.poifs.filesystem.DirectoryEntry

is this DirectoryEntry empty?

isEmpty() - Method in class loci.poi.poifs.filesystem.DirectoryNode

is this DirectoryEntry empty?

isEmpty() - Method in class loci.poi.util.DoubleList

Returns true if this list contains no elements.

isEmpty() - Method in class loci.poi.util.IntList

Returns true if this list contains no elements.

isEmpty() - Method in class loci.poi.util.ShortList

Returns true if this list contains no elements.

isEOFInBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

Whether the end of the file is in the current buffer or not

isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService

Determine whether or not two OMEXMLMetadata objects are equal.

isEqual(OMEXMLMetadata, OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BlankRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.BoolErrRecord
 
isEqual(CellValueRecordInterface) - Method in interface loci.poi.hssf.record.CellValueRecordInterface

returns whether this cell represents the same cell (NOT VALUE)

isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.FormulaRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.NumberRecord
 
isEqual(CellValueRecordInterface) - Method in class loci.poi.hssf.record.RKRecord
 
isError() - Method in class loci.poi.hssf.record.BoolErrRecord

Indicates whether the call holds an error value

isExtendedText() - Method in class loci.poi.hssf.record.UnicodeString
 
isFalse() - Method in class loci.poi.ddf.EscherBoolProperty

Whether this boolean property is false

isFalseColor() - Method in class loci.formats.FileStitcher
 
isFalseColor() - Method in class loci.formats.FormatReader
 
isFalseColor() - Method in interface loci.formats.IFormatReader

Returns false if IFormatReader.isIndexed() is false, or if IFormatReader.isIndexed()
 is true and the lookup table represents "real" color data.

isFalseColor() - Method in class loci.formats.ImageReader
 
isFalseColor() - Method in class loci.formats.ReaderWrapper
 
isFalseColor() - Method in class loci.tests.testng.Configuration
 
isFiji() - Static method in class loci.plugins.Updater

Returns true if the current ImageJ instance is actually a Fiji instance.

isFile() - Method in class loci.common.Location

Returns true if this pathname exists and represents a regular file.

isFilled() - Method in class loci.formats.ChannelFiller

Returns true if the indices are being factored out.

isFirstColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isFirstColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isFirstRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isFirstTime() - Method in class loci.plugins.in.ImporterOptions
 
isFixed() - Method in class loci.formats.FilePatternBlock
 
isFixedMap() - Method in class ome.metakit.ColumnMap

Return whether or not this map represents a fixed-type column.

isFloatingPoint(int) - Static method in class loci.formats.FormatTools

Determines whether the given pixel type is floating point or integer.

isForceThumbnails() - Method in class loci.plugins.in.ImporterOptions
 
isFormulaInShared(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord
 
isFreezePane() - Method in class loci.poi.hssf.util.PaneInformation

Returns true if this is a Freeze pane, false if it is a split pane.

isFullPlane(int, int, int, int) - Method in class loci.formats.FormatWriter

Returns true if the given rectangle coordinates correspond to a full
 image in the given series.

isFullyNonReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the irreversibility of the whole image.

isFullyReversible() - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the reversibility of the whole image.

isFunctionName() - Method in class loci.poi.hssf.record.NameRecord
 
isGenerated() - Method in class loci.poi.hssf.record.TextRecord
 
isGoto() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isGrayscaleMapping(IndexColorModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Tests whether the color indices represent a gray-scale image with
 the indicated number of bits over the color component range [0,255].

isGridsPrinted() - Method in class loci.poi.hssf.model.Sheet

get whether gridlines are printed.

isGridsPrinted() - Method in class loci.poi.hssf.usermodel.HSSFSheet

get whether gridlines are printed.

isGroupFiles() - Method in class loci.formats.FileStitcher
 
isGroupFiles() - Method in class loci.formats.FormatReader
 
isGroupFiles() - Method in interface loci.formats.IFormatReader

Returns true if we should group files in multi-file formats.

isGroupFiles() - Method in class loci.formats.ImageReader
 
isGroupFiles() - Method in class loci.formats.ReaderWrapper
 
isGroupFiles() - Method in class loci.plugins.in.ImporterOptions
 
isGroupFiles(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isGZipFile(String) - Static method in class loci.common.GZipHandle

Returns true if the given filename is a gzip file.

isHidden() - Method in class loci.common.Location

Returns true if the pathname is 'hidden'.

isHidden() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is hidden or not

isHiddenName() - Method in class loci.poi.hssf.record.NameRecord
 
isHorizontal() - Method in class loci.poi.hssf.record.BarRecord

true to display horizontal bar charts, false for vertical

isHorizontalBorder() - Method in class loci.poi.hssf.record.DatRecord

has a horizontal border

isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor
 
isHorizontallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
isHTTP() - Method in class loci.plugins.in.ImporterOptions
 
isIFDPointer() - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag

Returns true if this tag is used to point to an IFD
 structure containing additional tags.

isIgnoredFile(String, ConfigurationTree) - Static method in class loci.tests.testng.TestTools

Determines if the given file should be ignored by the test suite.

isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
isImageTiled(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
isInCache(int[]) - Method in class loci.formats.cache.Cache

Returns true if the object at the given dimensional position is
 in the cache.

isInCache(int) - Method in class loci.formats.cache.Cache

Returns true if the object at the given index is in the cache.

isIndentNotParentAlignment() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the alignment in this XF instead of the parent XF.

isIndentNotParentBorder() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the border in this XF instead of the parent XF.

isIndentNotParentCellOptions() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the locking/hidden in this XF instead of the parent XF.

isIndentNotParentFont() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the font in this XF instead of the parent XF.

isIndentNotParentFormat() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the format in this XF instead of the parent XF.

isIndentNotParentPattern() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether or not to use the pattern in this XF instead of the parent XF.

isIndexed() - Method in class loci.formats.ChannelFiller
 
isIndexed() - Method in class loci.formats.ChannelMerger
 
isIndexed() - Method in class loci.formats.FileStitcher
 
isIndexed() - Method in class loci.formats.FormatReader
 
isIndexed() - Method in interface loci.formats.IFormatReader

Gets whether the image planes are indexed color.

isIndexed() - Method in class loci.formats.ImageReader
 
isIndexed() - Method in class loci.formats.ReaderWrapper
 
isIndexed(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isIndexed() - Method in class loci.tests.testng.Configuration
 
isIndicesForGrayscale(byte[], byte[], byte[]) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Tests whether the color indices represent a gray-scale image.

isInstance(Class<?>, Object) - Static method in class loci.common.ReflectedUniverse

Deprecated.
Returns whether the given object is compatible with the
 specified class for the purposes of reflection.

isIntegral() - Method in class com.sun.media.imageio.plugins.tiff.TIFFField

Indicates whether the value associated with the field is of
 integral data type.

isIntensity() - Method in class loci.formats.in.SDTReader

Gets whether the reader is combining each lifetime
 histogram into a summed intensity image plane.

isInterleaved() - Method in class loci.formats.ChannelMerger
 
isInterleaved() - Method in class loci.formats.FileStitcher
 
isInterleaved(int) - Method in class loci.formats.FileStitcher
 
isInterleaved() - Method in class loci.formats.FormatReader
 
isInterleaved(int) - Method in class loci.formats.FormatReader
 
isInterleaved() - Method in class loci.formats.FormatWriter
 
isInterleaved() - Method in interface loci.formats.IFormatReader

Gets whether or not the channels are interleaved.

isInterleaved(int) - Method in interface loci.formats.IFormatReader

Gets whether or not the given sub-channel is interleaved.

isInterleaved() - Method in interface loci.formats.IFormatWriter

Gets whether or not the channels in an image are interleaved.

isInterleaved() - Method in class loci.formats.ImageReader
 
isInterleaved(int) - Method in class loci.formats.ImageReader
 
isInterleaved() - Method in class loci.formats.ImageWriter
 
isInterleaved(int) - Method in class loci.formats.in.ICSReader
 
isInterleaved(int) - Method in class loci.formats.in.SDTReader
 
isInterleaved() - Method in class loci.formats.ReaderWrapper
 
isInterleaved(int) - Method in class loci.formats.ReaderWrapper
 
isInterleaved() - Method in class loci.formats.WriterWrapper
 
isInterleaved(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isInterleaved() - Method in class loci.tests.testng.Configuration
 
isInterleavedSubC(Double, String[]) - Method in class loci.plugins.macro.LociFunctions
 
isInternalDateFormat(int) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a format ID this will check whether the format represents
  an internal excel date format or not.

isInValueSection() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
 
isInValueSection() - Method in class loci.poi.hssf.record.BlankRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.BoolErrRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.DBCellRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.FormulaRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.LabelRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.NumberRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.Record

DBCELL, ROW, VALUES all say yes

isInValueSection() - Method in class loci.poi.hssf.record.RKRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.RowRecord
 
isInValueSection() - Method in class loci.poi.hssf.record.SharedFormulaRecord

Mirroring formula records so it is registered in the ValueRecordsAggregate

isInValueSection() - Method in class loci.poi.hssf.record.StringRecord
 
isInvert() - Method in class loci.poi.hssf.record.AreaFormatRecord

swap foreground and background colours when data is negative

isInvertedLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
isInvertX() - Method in class loci.formats.in.PrairieMetadata

Gets whether the stage position X coordinates are inverted (i.e.,
 left-to-right).

isInvertY() - Method in class loci.formats.in.PrairieMetadata

Gets whether the stage position Y coordinates are inverted (i.e.,
 bottom-to-top).

isIsDate() - Method in class loci.poi.hssf.record.AxisOptionsRecord

this is a date axis

isItalic() - Method in class loci.poi.hssf.record.FontRecord

get whether the font is to be italics or not

isJPEG - Variable in class loci.formats.in.BaseZeissReader
 
isJVM64Bit() - Method in class loci.formats.gui.LegacyQTTools

Whether this JVM is 64-bit.

isLabelAsPercentage() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show category label/value as percentage (pie charts only)

isLastColRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isLastColRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isLastRowRelative() - Method in class loci.poi.hssf.record.formula.Area3DPtg
 
isLastRowRelative() - Method in class loci.poi.hssf.record.formula.AreaPtg
 
isLeaf - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
isLeaf(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
 
isLegacy() - Method in class loci.formats.DelegateReader

Gets whether to use the legacy reader by default.

isLicenseCodeException(FormatException) - Static method in class loci.plugins.util.LuraWave

Returns true if the given exception was cause
 by a missing or invalid LuraWave license code.

isLittleEndian - Variable in class loci.common.NIOInputStream

Endianness of the stream.

isLittleEndian() - Method in class loci.common.NIOInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.common.RandomAccessInputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.common.RandomAccessOutputStream

Gets the endianness of the stream.

isLittleEndian() - Method in class loci.formats.FileStitcher
 
isLittleEndian() - Method in class loci.formats.FormatReader
 
isLittleEndian() - Method in interface loci.formats.IFormatReader

Gets whether the data is in little-endian format.

isLittleEndian() - Method in class loci.formats.ImageReader
 
isLittleEndian() - Method in class loci.formats.ReaderWrapper
 
isLittleEndian() - Method in class loci.formats.tiff.IFD

Gets whether the TIFF information in this IFD is little-endian.

isLittleEndian() - Method in class loci.formats.tiff.TiffSaver

Returns whether or not we are writing little-endian data.

isLittleEndian(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isLittleEndian() - Method in class loci.tests.testng.Configuration
 
isLoadedFromMemo() - Method in class loci.formats.Memoizer
 
isLocal() - Method in class loci.plugins.in.ImporterOptions
 
isLocked() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

true if object is locked when sheet has been protected

isLocked() - Method in class loci.poi.hssf.record.ExtendedFormatRecord

get whether the cell is locked or not

isLogarithmicScale() - Method in class loci.poi.hssf.record.ValueRangeRecord

use logarithmic scale

isLogUnsupportedTypes() - Static method in class loci.poi.hpsf.VariantSupport

Checks whether logging of unsupported variant types warning is turned
 on or off.

isLossless() - Method in class loci.formats.in.ND2Handler
 
isMacoutlined() - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac outline font style thing (mac only) - Some mac person
 should comment this instead of me doing it (since I have no idea)

isMacro() - Method in class loci.poi.hssf.record.NameRecord
 
isMacshadowed() - Method in class loci.poi.hssf.record.FontRecord

whether to use the mac shado font style thing (mac only) - Some mac person
 should comment this instead of me doing it (since I have no idea)

isMetadataComplete() - Method in class loci.formats.FormatReader
 
isMetadataComplete() - Method in interface loci.formats.IFormatReader

Returns true if this format's metadata is completely parsed.

isMetadataComplete() - Method in class loci.formats.ImageReader
 
isMetadataComplete() - Method in class loci.formats.ReaderWrapper
 
isMetadataComplete(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isMetadataFiltered() - Method in class loci.formats.FormatReader
 
isMetadataFiltered() - Method in interface loci.formats.IFormatReader

Returns true if ugly metadata (entries with unprintable characters,
 and extremely large entries) are discarded from the metadata table.

isMetadataFiltered() - Method in class loci.formats.ImageReader
 
isMetadataFiltered() - Method in class loci.formats.ReaderWrapper
 
isMetadataFiltered(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isMinMaxPopulated() - Method in class loci.formats.MinMaxCalculator

Returns true if the values returned by
 getChannelGlobalMinimum/Maximum can be trusted.

isModulo - Variable in class loci.formats.tools.MakeTestOmeTiff
 
isMultibyte() - Method in class loci.poi.hssf.record.FooterRecord

see the unicode flag

isMultibyte() - Method in class loci.poi.hssf.record.HeaderRecord

see the unicode flag

isND2Nikon() - Static method in class loci.plugins.util.LociPrefs
 
isNeeded() - Method in class loci.poi.hssf.record.RecalcIdRecord
 
isNode - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

Flag indicating whether this subband mask is a node or not

isNode - Variable in class jj2000.j2k.wavelet.Subband

True if it is a node in the tree, false if it is a leaf.

isNoFill() - Method in class loci.poi.hssf.usermodel.HSSFShape
 
isNonStandardICCColorSpace(ColorSpace) - Static method in class com.sun.media.imageioimpl.common.ImageUtil

Returns true if the given ColorSpace object
 is an instance of ICC_ColorSpace but is not one of the
 standard ColorSpaces returned by
 ColorSpace.getInstance().

isNormalized() - Method in class loci.formats.FormatReader
 
isNormalized() - Method in interface loci.formats.IFormatReader

Returns true if we should normalize float data.

isNormalized() - Method in class loci.formats.ImageReader
 
isNormalized() - Method in class loci.formats.ReaderWrapper
 
isNormalized(Boolean[]) - Method in class loci.plugins.macro.LociFunctions
 
isNotBigImage() - Method in class loci.tests.testng.OpenBytesPerformanceTest
 
ISO8601_FORMAT - Static variable in class loci.common.DateTools

ISO 8601 date output formatter without milliseconds.

ISO8601_FORMAT_MS - Static variable in class loci.common.DateTools

ISO 8601 date output formatter with milliseconds.

ISO8601_FORMAT_MS - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output format with milliseconds.

ISO8601_FORMAT_S - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output format without milliseconds.

ISO8601_FORMATTER_MS - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output formatter with milliseconds.

ISO8601_FORMATTER_S - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date output formatter without milliseconds.

ISO8601_PARSER - Static variable in class ome.xml.model.primitives.Timestamp

ISO 8601 date input formatter.

ISO_SPEED_RATINGS - Static variable in class loci.formats.tiff.IFD
 
isOMERO() - Method in class loci.plugins.in.ImporterOptions
 
isOMEXMLMetadata(Object) - Method in interface loci.formats.services.OMEXMLService

Checks whether the given object is an OME-XML metadata object.

isOMEXMLMetadata(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
 
isOMEXMLRoot(Object) - Method in interface loci.formats.services.OMEXMLService

Checks whether the given object is an OME-XML root object.

isOMEXMLRoot(Object) - Method in class loci.formats.services.OMEXMLServiceImpl
 
isOptimizedChoose() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isOptimizedIf() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isOrderCertain() - Method in class loci.formats.FileStitcher
 
isOrderCertain() - Method in class loci.formats.FormatReader
 
isOrderCertain() - Method in interface loci.formats.IFormatReader

Gets whether the dimension order and sizes are known, or merely guesses.

isOrderCertain() - Method in class loci.formats.ImageReader
 
isOrderCertain() - Method in class loci.formats.ReaderWrapper
 
isOrderCertain(String[]) - Method in class loci.plugins.macro.LociFunctions
 
isOriginalMetadataPopulated() - Method in class loci.formats.FormatReader
 
isOriginalMetadataPopulated() - Method in interface loci.formats.IFormatReader

Returns true if we should save proprietary metadata
 in the MetadataStore.

isOriginalMetadataPopulated() - Method in class loci.formats.ImageReader
 
isOriginalMetadataPopulated() - Method in class loci.formats.ReaderWrapper
 
isOriginalMetadataPopulated(Boolean[]) - Method in class loci.plugins.macro.LociFunctions
 
isOriginalSigned(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder

Returns true if the original data of the specified component was
 signed.

isOrigSig - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

An array specifying, for each component,if the data was signed
        or not

isOrigSigned(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Returns true if the data read was originally signed in the specified
 component, false if not.

isOrigSigned(int) - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReader

Returns true if the data read was originally signed in the specified
 component, false if not.

isOrigSigned(int) - Method in class jj2000.j2k.image.input.ImgReaderPGM

Returns true if the data read was originally signed in the specified
 component, false if not.

isot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
 
isPacketWritable() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Returns true if the current packet is writable i.e.

isPictQTJava() - Static method in class loci.plugins.util.LociPrefs
 
isPlotVisibleOnly() - Method in class loci.poi.hssf.record.SheetPropertiesRecord

Only show visible cells on the chart.

isPossible(String, String) - Method in class loci.plugins.prefs.OptionsList

Gets whether the specified value is a possible one
 for the string option with the given key.

isPrintable() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord

object appears when printed

isPrintGridlines() - Method in class loci.poi.hssf.usermodel.HSSFSheet

Returns whether gridlines are printed.

isPropertySetStream(InputStream) - Static method in class loci.poi.hpsf.PropertySet

Checks whether an InputStream is in the Horrible
 Property Set Format.

isPropertySetStream(byte[], int, int) - Static method in class loci.poi.hpsf.PropertySet

Checks whether a byte array is in the Horrible Property Set
 Format.

isProtected() - Method in class loci.poi.hssf.model.Sheet
 
isPseudoColorLut() - Method in class loci.plugins.util.RecordedImageProcessor
 
isPure() - Method in class loci.poi.hpsf.CustomProperties

Tells whether this CustomProperties instance is pure or one or
 more properties of the underlying low-level property set has been
 dropped.

isQTExpired() - Method in class loci.formats.gui.LegacyQTTools

Whether QuickTime for Java has expired.

isQTQTJava() - Static method in class loci.plugins.util.LociPrefs
 
isQuiet() - Method in class loci.plugins.in.ImporterOptions
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
 
isRandomAccessEasy(int) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
 
ISRandomAccessIO - Class in jj2000.j2k.util

This class implements a wrapper to turn an InputStream into a
 RandomAccessIO.

ISRandomAccessIO(InputStream, int, int, int) - Constructor for class jj2000.j2k.util.ISRandomAccessIO

Creates a new RandomAccessIO wrapper for the given InputStream
 'is'.

ISRandomAccessIO(InputStream) - Constructor for class jj2000.j2k.util.ISRandomAccessIO

Creates a new RandomAccessIO wrapper for the given InputStream
 'is'.

isRawCodestream() - Method in class loci.formats.in.JPEG2000MetadataParser

Whether or not the codestream is raw and not JP2 boxed.

isReaderEnabled(Class<? extends IFormatReader>) - Static method in class loci.plugins.util.LociPrefs
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
 
isReadOnly() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
isReadWrite - Variable in class loci.common.NIOFileHandle

Whether or not the file is opened read/write.

isRegex() - Method in class loci.formats.FilePattern

Returns whether or not this pattern is a regular expression.

isReserved() - Method in class loci.poi.hssf.record.ValueRangeRecord

reserved, must equal 1 (excel dev.

isReserved1() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

reserved field

isReversed() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

categories are displayed in reverse order

isReversible(int, int) - Method in class jj2000.j2k.entropy.encoder.EntropyCoder

Returns the reversibility of the tile-component data that is provided
 by the object.

isReversible() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Returns true if this transform is reversible in current
 tile.

isReversible() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Returns true if this transform is reversible in current
 tile.

isReversible(int, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer

Returns true if the quantized data is reversible, for the specified
 tile-component.

isReversible(int, int) - Method in class jj2000.j2k.quantization.QuantTypeSpec

Check the reversibility of the given tile-component.

isReversible(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler

Since ROI scaling is always a reversible operation, it calls
 isReversible() method of it source (the quantizer module).

isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns the reversibility of the filter.

isReversible() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns the reversibility of the filter.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec

Check the reversibility of filters contained is the given
 tile-component.

isReversible(int, int) - Method in interface jj2000.j2k.wavelet.analysis.ForwWTDataProps

Returns the reversibility of the given tile-component.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Returns the reversibility of the wavelet transform for the specified
 component and tile.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Returns the reversibility of the wavelet transform for the specified
 component, in the current tile.

isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns the reversibility of the filter.

isReversible() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns the reversibility of the filter.

isReversible(int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec

Check the reversibility of filters contained is the given
 tile-component.

isReversible() - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns the reversibility of the filter.

isReversible(int, int) - Method in interface jj2000.j2k.wavelet.WaveletTransform

Returns the reversibility of the wavelet transform for the
 specified component and tile.

isRGB() - Method in class loci.formats.ChannelFiller
 
isRGB() - Method in class loci.formats.ChannelMerger
 
isRGB() - Method in class loci.formats.ChannelSeparator
 
isRGB() - Method in class loci.formats.FileStitcher
 
isRGB() - Method in class loci.formats.FormatReader
 
isRGB() - Method in interface loci.formats.IFormatReader

Checks if the image planes in the file have more than one channel per
 IFormatReader.openBytes(int) call.

isRGB() - Method in class loci.formats.ImageReader
 
isRGB() - Method in class loci.formats.ReaderWrapper
 
isRGB() - Method in interface loci.formats.services.WlzService

Gets boolean for whether image is colour or not.

isRGB() - Method in class loci.formats.services.WlzServiceImpl
 
isRGB() - Method in class loci.tests.testng.Configuration
 
isRichText() - Method in class loci.poi.hssf.record.UnicodeString
 
isROIinPkt() - Method in class jj2000.j2k.codestream.writer.PktEncoder

Tells if there was ROI information in the last written packet

isRoot() - Method in class loci.poi.poifs.filesystem.EntryNode

is this the root of the tree?

isRowAbsolute() - Method in class loci.poi.hssf.util.CellReference
 
isRowBroken(int) - Method in class loci.poi.hssf.model.Sheet

Queries if the specified row has a page break

isRowBroken(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet

Determines if there is a page break at the indicated row

isRowGroupCollapsed(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
isRowGroupHiddenByParent(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
 
isRowRelative() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
 
isRowRelative() - Method in class loci.poi.hssf.record.formula.ReferencePtg
 
isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

Returns true if the wavelet filter computes or uses the
 same "inner" subband coefficient as the full frame wavelet transform,
 and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3

Returns true if the wavelet filter computes or uses the same "inner"
 subband coefficient as the full frame wavelet transform, and false
 otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

Returns true if the wavelet filter computes or uses the
 same "inner" subband coefficient as the full frame wavelet transform,
 and false otherwise.

isSameAsFullWT(int, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3

Returns true if the wavelet filter computes or uses the same "inner"
 subband coefficient as the full frame wavelet transform, and false
 otherwise.

isSameAsFullWT(int, int, int) - Method in interface jj2000.j2k.wavelet.WaveletFilter

Returns true if the wavelet filter computes or uses the
 same "inner" subband coefficient as the full frame wavelet transform,
 and false otherwise.

isSaved() - Method in class loci.plugins.prefs.Option

Gets whether option should be saved to ImageJ preferences file.

isSaved(String) - Method in class loci.plugins.prefs.OptionsList

Gets whether the option with the given key
 is saved to the ImageJ preferences file.

isSavedToMemo() - Method in class loci.formats.Memoizer
 
isSDTIntensity() - Static method in class loci.plugins.util.LociPrefs
 
isSemiVolatile() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isSeriesOn(int) - Method in class loci.plugins.in.ImporterOptions
 
isSet(String) - Method in class loci.plugins.prefs.OptionsList

Gets the value of the boolean option with the given key.

isSet(int) - Method in class loci.poi.util.BitField

Is the field set or not? This is most commonly used for a
 single-bit field, which is often used to represent a boolean
 value; the results of using it for a multi-bit field is to
 determine whether *any* of its bits are set

isSetByDefault(String) - Method in class loci.plugins.prefs.OptionsList

Gets the default value of the boolean option with the given key.

isShadow() - Method in class loci.poi.hssf.record.AreaRecord

display a shadow for the chart

isShadow() - Method in class loci.poi.hssf.record.BarRecord

display a shadow for the chart

isSharedFormula() - Method in class loci.poi.hssf.record.FormulaRecord
 
isSheetNameOk() - Method in class loci.poi.hssf.util.RangeAddress
 
isSheetNameOk(String) - Static method in class loci.poi.hssf.util.RangeAddress
 
isShowActual() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show actual value of the data point

isShowBubbleSizes() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

??

isShowBubbleSizes() - Method in class loci.poi.hssf.record.TextRecord
 
isShowCategoryLabelAsPercentage() - Method in class loci.poi.hssf.record.TextRecord
 
isShowKey() - Method in class loci.poi.hssf.record.TextRecord

true = draw legend

isShowLabel() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

display category label

isShowLabel() - Method in class loci.poi.hssf.record.TextRecord
 
isShowMetadata() - Method in class loci.plugins.in.ImporterOptions
 
isShowOMEXML() - Method in class loci.plugins.in.ImporterOptions
 
isShowPercent() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show value as percentage of total (pie charts only)

isShowSeriesKey() - Method in class loci.poi.hssf.record.DatRecord

shows the series key

isShowValue() - Method in class loci.poi.hssf.record.TextRecord

false = text is category label

isShowValueAsPercentage() - Method in class loci.poi.hssf.record.TextRecord
 
isSigned(int) - Static method in class loci.formats.FormatTools

Determines whether the given pixel type is signed or unsigned.

isSingleFile(String) - Method in class loci.formats.FormatReader
 
isSingleFile(String) - Method in interface loci.formats.IFormatReader

Returns true if this is a single-file format.

isSingleFile(String) - Method in class loci.formats.ImageReader
 
isSingleFile(String) - Method in class loci.formats.in.AFIReader
 
isSingleFile(String) - Method in class loci.formats.in.AnalyzeReader
 
isSingleFile(String) - Method in class loci.formats.in.APLReader
 
isSingleFile(String) - Method in class loci.formats.in.BDReader
 
isSingleFile(String) - Method in class loci.formats.in.BioRadReader
 
isSingleFile(String) - Method in class loci.formats.in.BrukerReader
 
isSingleFile(String) - Method in class loci.formats.in.CellSensReader
 
isSingleFile(String) - Method in class loci.formats.in.CellVoyagerReader
 
isSingleFile(String) - Method in class loci.formats.in.DeltavisionReader
 
isSingleFile(String) - Method in class loci.formats.in.FakeReader
 
isSingleFile(String) - Method in class loci.formats.in.FlexReader
 
isSingleFile(String) - Method in class loci.formats.in.FujiReader
 
isSingleFile(String) - Method in class loci.formats.in.FV1000Reader
 
isSingleFile(String) - Method in class loci.formats.in.HitachiReader
 
isSingleFile(String) - Method in class loci.formats.in.ICSReader
 
isSingleFile(String) - Method in class loci.formats.in.ImagicReader
 
isSingleFile(String) - Method in class loci.formats.in.InCellReader
 
isSingleFile(String) - Method in class loci.formats.in.L2DReader
 
isSingleFile(String) - Method in class loci.formats.in.LeicaReader
 
isSingleFile(String) - Method in class loci.formats.in.MetamorphReader
 
isSingleFile(String) - Method in class loci.formats.in.MIASReader
 
isSingleFile(String) - Method in class loci.formats.in.MicromanagerReader
 
isSingleFile(String) - Method in class loci.formats.in.NDPISReader
 
isSingleFile(String) - Method in class loci.formats.in.NiftiReader
 
isSingleFile(String) - Method in class loci.formats.in.NRRDReader
 
isSingleFile(String) - Method in class loci.formats.in.OMETiffReader
 
isSingleFile(String) - Method in class loci.formats.in.OperettaReader
 
isSingleFile(String) - Method in class loci.formats.in.PerkinElmerReader
 
isSingleFile(String) - Method in class loci.formats.in.PrairieReader
 
isSingleFile(String) - Method in class loci.formats.in.ScanrReader
 
isSingleFile(String) - Method in class loci.formats.in.ScreenReader
 
isSingleFile(String) - Method in class loci.formats.in.TCSReader
 
isSingleFile(String) - Method in class loci.formats.in.TillVisionReader
 
isSingleFile(String) - Method in class loci.formats.in.VisitechReader
 
isSingleFile(String) - Method in class loci.formats.in.ZeissLSMReader
 
isSingleFile(String) - Method in class loci.formats.in.ZeissTIFFReader
 
isSingleFile(String) - Method in class loci.formats.ReaderWrapper
 
isSmall(int) - Static method in class loci.poi.poifs.property.Property

does the length indicate a small document?

isSmoothedLine() - Method in class loci.poi.hssf.record.SeriesLabelsRecord

show smooth line

isSpace() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isSpecifyRanges() - Method in class loci.plugins.in.ImporterOptions
 
isSplitChannels() - Method in class loci.plugins.in.ImporterOptions
 
isSplitFocalPlanes() - Method in class loci.plugins.in.ImporterOptions
 
isSplitTimepoints() - Method in class loci.plugins.in.ImporterOptions
 
isStacked() - Method in class loci.poi.hssf.record.AreaRecord

series is stacked

isStacked() - Method in class loci.poi.hssf.record.BarRecord

stack displayed values

isString16bit(int) - Method in class loci.poi.hssf.record.SSTRecord
 
isStruckout() - Method in class loci.poi.hssf.record.FontRecord

get whether the font is to be stricken out or not

isSum() - Method in class loci.poi.hssf.record.formula.AttrPtg
 
isSummaryInformation() - Method in class loci.poi.hpsf.PropertySet

Checks whether this PropertySet represents a Summary
 Information.

isSummaryInformation() - Method in class loci.poi.hpsf.SpecialPropertySet
 
isSupportedType(int) - Method in class loci.formats.FormatWriter
 
isSupportedType(int) - Method in interface loci.formats.IFormatWriter

Checks if the given pixel type is supported.

isSupportedType(int) - Method in class loci.formats.ImageWriter
 
isSupportedType(int) - Method in class loci.formats.WriterWrapper
 
isSwapDimensions() - Method in class loci.plugins.in.ImporterOptions
 
isTermPass - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Array of flags indicating terminated passes (valid or non-valid
 truncation points).

isTextLocked() - Method in class loci.poi.hssf.record.TextObjectBaseRecord

Text has been locked

isThisType(String, boolean) - Method in class loci.formats.DelegateReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.DelegateReader
 
isThisType(String) - Method in class loci.formats.FormatHandler

Checks if a file matches the type of this format handler.

isThisType(String, boolean) - Method in class loci.formats.FormatReader

Checks if a file matches the type of this format reader.

isThisType(byte[]) - Method in class loci.formats.FormatReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.FormatReader
 
isThisType(String) - Method in class loci.formats.FormatReader
 
isThisType(String) - Method in interface loci.formats.IFormatHandler

Checks if the given string is a valid filename for this file format.

isThisType(String, boolean) - Method in interface loci.formats.IFormatReader

Checks if the given file is a valid instance of this file format.

isThisType(byte[]) - Method in interface loci.formats.IFormatReader

Checks if the given block is a valid header for this file format.

isThisType(RandomAccessInputStream) - Method in interface loci.formats.IFormatReader

Checks if the given stream is a valid stream for this file format.

isThisType(String, boolean) - Method in class loci.formats.ImageReader
 
isThisType(byte[]) - Method in class loci.formats.ImageReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.ImageReader
 
isThisType(String) - Method in class loci.formats.ImageReader
 
isThisType(String) - Method in class loci.formats.ImageWriter
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AFIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AliconaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AmiraReader
 
isThisType(String, boolean) - Method in class loci.formats.in.AnalyzeReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AnalyzeReader
 
isThisType(String, boolean) - Method in class loci.formats.in.APLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.APNGReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ARFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.AVIReader
 
isThisType(String, boolean) - Method in class loci.formats.in.BDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadGelReader
 
isThisType(String, boolean) - Method in class loci.formats.in.BioRadReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BioRadSCNReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BMPReader
 
isThisType(String, boolean) - Method in class loci.formats.in.BrukerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BrukerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.BurleighReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CanonRawReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.CellomicsReader
 
isThisType(String, boolean) - Method in class loci.formats.in.CellVoyagerReader
 
isThisType(String, boolean) - Method in class loci.formats.in.CellWorxReader
 
isThisType(String, boolean) - Method in class loci.formats.in.DeltavisionReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DeltavisionReader
 
isThisType(String, boolean) - Method in class loci.formats.in.DicomReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DicomReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.DNGReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.Ecat7Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.FakeReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FEITiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FluoviewReader
 
isThisType(String, boolean) - Method in class loci.formats.in.FujiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FujiReader
 
isThisType(String, boolean) - Method in class loci.formats.in.FV1000Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.FV1000Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanDM2Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GatanReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GelReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.GIFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HISReader
 
isThisType(String, boolean) - Method in class loci.formats.in.HitachiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HitachiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.HRDGDFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImaconReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ImagicReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisHDFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImarisReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IMODReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImprovisionTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ImspectorReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCell3000Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.InCellReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InCellReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.INRReader
 
isThisType(String, boolean) - Method in class loci.formats.in.InveonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.InveonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPLabReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IPWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.IvisionReader
 
isThisType(String, boolean) - Method in class loci.formats.in.JEOLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JEOLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPEG2000Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.JPKReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.JPXReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KhorosReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.KodakReader
 
isThisType(String, boolean) - Method in class loci.formats.in.L2DReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.L2DReader
 
isThisType(String, boolean) - Method in class loci.formats.in.LegacyND2Reader
 
isThisType(String, boolean) - Method in class loci.formats.in.LeicaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LeicaReader
 
isThisType(String, boolean) - Method in class loci.formats.in.LeicaSCNReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LEOReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.LIFReader
 
isThisType(String, boolean) - Method in class loci.formats.in.MetamorphReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.MIASReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MIASReader
 
isThisType(String, boolean) - Method in class loci.formats.in.MicromanagerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MicromanagerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MinimalTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MNGReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MolecularImagingReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRCReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.MRWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeND2Reader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NativeQTReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NDPIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NDPISReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NiftiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NiftiReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonElementsTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NikonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NikonTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.NRRDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.NRRDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OBFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMETiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OMEXMLReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabRawReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OpenlabReader
 
isThisType(String, boolean) - Method in class loci.formats.in.OperettaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OperettaReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.OxfordInstrumentsReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCIReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PCORAWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCORAWReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PCXReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PDSReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PDSReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PerkinElmerReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PGMReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PhotoshopTiffReader
 
isThisType(String, boolean) - Method in class loci.formats.in.PrairieReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PrairieReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PSDReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.PyramidTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SBIGReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ScanrReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScanrReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ScreenReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ScreenReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SEQReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SIFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SimplePCITiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SISReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SlidebookTiffReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SMCameraReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.SpiderReader
 
isThisType(String, boolean) - Method in class loci.formats.in.SVSReader
 
isThisType(String, boolean) - Method in class loci.formats.in.TCSReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TCSReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TextReader
 
isThisType(String, boolean) - Method in class loci.formats.in.TillVisionReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TopometrixReader
 
isThisType(String, boolean) - Method in class loci.formats.in.TrestleReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.TrestleReader
 
isThisType(String, boolean) - Method in class loci.formats.in.UnisokuReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.UnisokuReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VarianFDFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VGSAMReader
 
isThisType(String, boolean) - Method in class loci.formats.in.VisitechReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityClippingReader
 
isThisType(String, boolean) - Method in class loci.formats.in.VolocityReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.VolocityReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.WATOPReader
 
isThisType(String, boolean) - Method in class loci.formats.in.WlzReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissCZIReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissLSMReader
 
isThisType(String, boolean) - Method in class loci.formats.in.ZeissTIFFReader
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.in.ZeissZVIReader
 
isThisType(String, boolean) - Method in class loci.formats.ReaderWrapper
 
isThisType(byte[]) - Method in class loci.formats.ReaderWrapper
 
isThisType(RandomAccessInputStream) - Method in class loci.formats.ReaderWrapper
 
isThisType(String) - Method in class loci.formats.ReaderWrapper
 
isThisType(String) - Method in class loci.formats.WriterWrapper
 
isThisType(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
isThisTypeFast(String, String[]) - Method in class loci.plugins.macro.LociFunctions
 
isThumbnailSeries() - Method in class loci.formats.FileStitcher
 
isThumbnailSeries() - Method in class loci.formats.FormatReader
 
isThumbnailSeries() - Method in interface loci.formats.IFormatReader

Gets whether the current series is a lower resolution copy of a different
 series.

isThumbnailSeries() - Method in class loci.formats.ImageReader
 
isThumbnailSeries() - Method in class loci.formats.ReaderWrapper
 
isTiffImageIO() - Static method in class loci.plugins.util.LociPrefs
 
isTileCompSpecified(int, int) - Method in class jj2000.j2k.ModuleSpec

Whether or not a tile-component specification has been defined

isTiled() - Method in class loci.formats.tiff.IFD
 
isTileSpecified(int) - Method in class jj2000.j2k.ModuleSpec

Whether or not specifications have been entered for the given
 tile.

isTimeSeries() - Method in class loci.formats.in.PrairieMetadata.Sequence

Gets whether this Sequence should be considered a time series.

isTopDown() - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam

Returns the value of the topDown parameter.

isTrue() - Method in class loci.poi.ddf.EscherBoolProperty

Whether this boolean property is true

isUnCompressedUnicode() - Method in class loci.poi.hssf.record.LabelRecord

is this uncompressed unicode (16bit)?  Or just 8-bit compressed?

isUnCompressedUnicode() - Method in class loci.poi.hssf.record.StringRecord

is this uncompressed unicode (16bit)?  Or just 8-bit compressed?

isUngroupFiles() - Method in class loci.plugins.in.ImporterOptions
 
isUnicodeString(String) - Static method in class loci.poi.util.StringUtil

Checks to see if a given String needs to be represented as Unicode

isUnknown() - Method in class loci.poi.hssf.record.LineFormatRecord

book marks this as reserved = 0 but it seems to do something

isUsedFile(String) - Method in class loci.formats.FormatReader

Returns true if the given file name is in the used files list.

isUseExcel4Colors() - Method in class loci.poi.hssf.record.DataFormatRecord

set true to use excel 4 colors.

isUsing1904DateWindowing() - Method in class loci.poi.hssf.model.Workbook

Whether date windowing is based on 1/2/1904 or 1/1/1900.

isUsingPatternIds() - Method in class loci.formats.FileStitcher

Gets whether the reader is using file patterns for IDs.

isValid() - Method in class loci.formats.FilePattern

Gets whether the file pattern string is valid.

isValidExcelDate(double) - Static method in class loci.poi.hssf.usermodel.HSSFDateUtil

Given a double, checks if it is a valid Excel date.

isValidHeader() - Method in class loci.formats.tiff.TiffParser

Tests this stream to see if it represents a TIFF file.

isValidRange(int, int, int) - Static method in class loci.formats.tools.FakeImage
 
isValue() - Method in class loci.poi.hssf.record.BlankRecord
 
isValue() - Method in class loci.poi.hssf.record.BoolErrRecord
 
isValue() - Method in class loci.poi.hssf.record.FormulaRecord
 
isValue() - Method in class loci.poi.hssf.record.LabelRecord
 
isValue() - Method in class loci.poi.hssf.record.LabelSSTRecord
 
isValue() - Method in class loci.poi.hssf.record.NumberRecord
 
isValue() - Method in class loci.poi.hssf.record.Record

tells whether this type of record contains a value

isValue() - Method in class loci.poi.hssf.record.RKRecord
 
isValue() - Method in class loci.poi.hssf.record.SharedFormulaRecord

Register it in the ValueRecordsAggregate so it can go into the FormulaRecordAggregate

isValueAxisCrossing() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord

set true to indicate axis crosses between categories and false to cross axis midway

isValuesInReverse() - Method in class loci.poi.hssf.record.ValueRangeRecord

values are reverses in graph

isVersionChecking() - Method in class loci.formats.Memoizer

Returns whether or not version checking is done based upon major/minor
 version numbers.

isVertical() - Method in class loci.poi.hssf.record.LegendRecord

vertical or horizontal legend (1 or 0 respectively).

isVertical() - Method in class loci.poi.hssf.record.TextRecord

true = text is vertical

isVerticalBorder() - Method in class loci.poi.hssf.record.DatRecord

has vertical border

isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFAnchor
 
isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFChildAnchor
 
isVerticallyFlipped() - Method in class loci.poi.hssf.usermodel.HSSFClientAnchor
 
isViewBrowser() - Method in class loci.plugins.in.ImporterOptions
 
isViewHyperstack() - Method in class loci.plugins.in.ImporterOptions
 
isViewImage5D() - Method in class loci.plugins.in.ImporterOptions
 
isViewNone() - Method in class loci.plugins.in.ImporterOptions
 
isViewStandard() - Method in class loci.plugins.in.ImporterOptions
 
isViewView5D() - Method in class loci.plugins.in.ImporterOptions
 
isVirtual() - Method in class loci.plugins.in.ImporterOptions
 
isVisible() - Method in class loci.poi.hssf.usermodel.HSSFComment

Sets whether this comment is visible.

isWarning() - Method in class loci.common.StatusEvent

Returns whether or not this is a warning event.

isWindowless() - Method in class loci.plugins.in.ImporterOptions
 
isWindowless() - Method in class loci.plugins.in.ImportProcess
 
isWindowless(IFormatReader) - Static method in class loci.plugins.util.LociPrefs

Gets whether windowless mode should be used when
 opening this reader's currently initialized dataset.

isZipFile(String) - Static method in class loci.common.ZipHandle

Returns true if the given filename is a Zip file.

isZlib - Variable in class loci.formats.in.BaseZeissReader
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ConfigWindow
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.ND2Widgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.PictWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.QTWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.SDTWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.config.TiffDelegateWidgets
 
itemStateChanged(ItemEvent) - Method in class loci.plugins.in.MainDialog

Handles toggling of mutually exclusive options.

itemStateChanged(ItemEvent) - Method in class loci.plugins.in.SwapDialog
 
IterationRecord - Class in loci.poi.hssf.record

Title:        Iteration Record

IterationRecord() - Constructor for class loci.poi.hssf.record.IterationRecord
 
IterationRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.IterationRecord

Constructs an Iteration record and sets its fields appropriately.

iterator() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD

Returns an Iterator over the TIFF fields.

iterator() - Method in class loci.poi.hssf.model.WorkbookRecordList
 
iterator() - Method in class loci.poi.util.IntMapper
 
IvisionReader - Class in loci.formats.in

IvisionReader is the file format reader for IVision (.IPM) files.

IvisionReader() - Constructor for class loci.formats.in.IvisionReader

Constructs a new Ivision reader.





J

J2KImageReader - Class in com.sun.media.imageioimpl.plugins.jpeg2000

This class is the Java Image IO plugin reader for JPEG 2000 JP2 image file
  format.

J2KImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader

Constructs J2KImageReader from the provided
  ImageReaderSpi.

J2KImageReaderResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageReaderResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderResources
 
J2KImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
 
J2KImageReadParam - Class in com.sun.media.imageio.plugins.jpeg2000

A subclass of ImageReadParam for reading images in
 the JPEG 2000 format.

J2KImageReadParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam

Constructs a default instance of J2KImageReadParam.

J2KImageReadParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A subclass of ImageReadParam for reading images in
 the JPEG 2000 format.

J2KImageReadParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava

Constructs a default instance of J2KImageReadParamJava.

J2KImageReadParamJava(ImageReadParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
 
J2KImageWriteParam - Class in com.sun.media.imageio.plugins.jpeg2000

A subclass of ImageWriteParam for writing images in
 the JPEG 2000 format.

J2KImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Constructor which sets the Locale.

J2KImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam

Constructs a J2KImageWriteParam object with default
 values for all parameters.

J2KImageWriteParamJava - Class in com.sun.media.imageioimpl.plugins.jpeg2000

A subclass of ImageWriteParam for writing images in
 the JPEG 2000 format.

J2KImageWriteParamJava(RenderedImage, Locale) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructor to set locales.

J2KImageWriteParamJava(IIOImage, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructor to set locales.

J2KImageWriteParamJava() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default
 values for all parameters.

J2KImageWriteParamJava(RenderedImage) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default
 values for all parameters.

J2KImageWriteParamJava(Raster) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava

Constructs a J2KImageWriteParamJava object with default
 values for all parameters.

J2KImageWriter - Class in com.sun.media.imageioimpl.plugins.jpeg2000

The Java Image IO plugin writer for encoding a RenderedImage into
 a JPEG 2000 part 1 file (JP2) format.

J2KImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter

Constructs J2KImageWriter based on the provided
  ImageWriterSpi.

J2KImageWriterResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageWriterResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterResources
 
J2KImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
 
J2KMetadata - Class in com.sun.media.imageioimpl.plugins.jpeg2000

Metadata for the J2K plug-in.

J2KMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructor containing code shared by other constructors.

J2KMetadata(ImageInputStream, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
J2KMetadata(ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default stream J2KMetadata object appropriate
 for the given write parameters.

J2KMetadata(ImageTypeSpecifier, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default image J2KMetadata object appropriate
 for the given image type and write parameters.

J2KMetadata(ColorModel, SampleModel, int, int, ImageWriteParam, ImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata

Constructs a default image J2KMetadata object appropriate
 for the given image type and write parameters.

J2KMetadataFormat - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormatResources
 
J2KReadState - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Constructs J2KReadState.

J2KReadState(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState

Constructs J2KReadState.

J2KRenderedImage - Class in com.sun.media.imageioimpl.plugins.jpeg2000
 
J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KMetadata, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
J2KRenderedImage(ImageInputStream, J2KImageReadParamJava, J2KImageReader) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
J2KRenderedImage(J2KReadState) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
 
JAIIIOService - Interface in loci.formats.services

Interface defining methods for reading data using JAI Image I/O.

JAIIIOServiceImpl - Class in loci.formats.services

Implementation of JAIIIOService for reading and writing JPEG-2000 data.

JAIIIOServiceImpl() - Constructor for class loci.formats.services.JAIIIOServiceImpl

Default constructor.

JavaWriter - Class in loci.formats.out

JavaWriter is the file format writer for Java source code.

JavaWriter() - Constructor for class loci.formats.out.JavaWriter
 
JEOLReader - Class in loci.formats.in

JEOLReader is the file format reader for JEOL files.

JEOLReader() - Constructor for class loci.formats.in.JEOLReader

Constructs a new JEOL reader.

jj2000.j2k - package jj2000.j2k
 
jj2000.j2k.codestream - package jj2000.j2k.codestream
 
jj2000.j2k.codestream.reader - package jj2000.j2k.codestream.reader
 
jj2000.j2k.codestream.writer - package jj2000.j2k.codestream.writer
 
jj2000.j2k.decoder - package jj2000.j2k.decoder
 
jj2000.j2k.entropy - package jj2000.j2k.entropy
 
jj2000.j2k.entropy.decoder - package jj2000.j2k.entropy.decoder
 
jj2000.j2k.entropy.encoder - package jj2000.j2k.entropy.encoder
 
jj2000.j2k.fileformat - package jj2000.j2k.fileformat
 
jj2000.j2k.fileformat.reader - package jj2000.j2k.fileformat.reader
 
jj2000.j2k.fileformat.writer - package jj2000.j2k.fileformat.writer
 
jj2000.j2k.image - package jj2000.j2k.image
 
jj2000.j2k.image.forwcomptransf - package jj2000.j2k.image.forwcomptransf
 
jj2000.j2k.image.input - package jj2000.j2k.image.input
 
jj2000.j2k.image.invcomptransf - package jj2000.j2k.image.invcomptransf
 
jj2000.j2k.io - package jj2000.j2k.io
 
jj2000.j2k.quantization - package jj2000.j2k.quantization
 
jj2000.j2k.quantization.dequantizer - package jj2000.j2k.quantization.dequantizer
 
jj2000.j2k.quantization.quantizer - package jj2000.j2k.quantization.quantizer
 
jj2000.j2k.roi - package jj2000.j2k.roi
 
jj2000.j2k.roi.encoder - package jj2000.j2k.roi.encoder
 
jj2000.j2k.util - package jj2000.j2k.util
 
jj2000.j2k.wavelet - package jj2000.j2k.wavelet
 
jj2000.j2k.wavelet.analysis - package jj2000.j2k.wavelet.analysis
 
jj2000.j2k.wavelet.synthesis - package jj2000.j2k.wavelet.synthesis
 
JJ2KExceptionHandler - Class in jj2000.j2k

This class handles exceptions.

JJ2KExceptionHandler() - Constructor for class jj2000.j2k.JJ2KExceptionHandler
 
JJ2KInfo - Class in jj2000.j2k

This class holds general JJ2000 information, such as the version number,
 copyright, contact address, etc.

JJ2KInfo() - Constructor for class jj2000.j2k.JJ2KInfo
 
join(AbstractEscherHolderRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord

Big drawing group records are split but it's easier to deal with them
 as a whole group so we need to join them together.

Join - Class in mdbtools.dbengine.sql
 
Join() - Constructor for class mdbtools.dbengine.sql.Join
 
JP2_HEADER_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
 
JP2_SIGNATURE_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes

Main boxes

JPEG2000BoxType - Enum in loci.formats.codec

An enumeration of JPEG 2000 box types.

JPEG2000Codec - Class in loci.formats.codec

This class implements JPEG 2000 compression and decompression.

JPEG2000Codec() - Constructor for class loci.formats.codec.JPEG2000Codec
 
JPEG2000CodecOptions - Class in loci.formats.codec

Options for compressing and decompressing JPEG-2000 data.

JPEG2000CodecOptions() - Constructor for class loci.formats.codec.JPEG2000CodecOptions

Creates a new instance.

JPEG2000CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.JPEG2000CodecOptions

Creates a new instance with options.

Jpeg2000GrindTest - Class in loci.tests.testng

Test grinding in a multi-threaded environment a JPEG-2000 encoded TIFF.

Jpeg2000GrindTest() - Constructor for class loci.tests.testng.Jpeg2000GrindTest
 
JPEG2000MetadataParser - Class in loci.formats.in

A parser for JPEG 2000 metadata.

JPEG2000MetadataParser(RandomAccessInputStream) - Constructor for class loci.formats.in.JPEG2000MetadataParser

Constructs a new JPEG2000MetadataParser.

JPEG2000MetadataParser(RandomAccessInputStream, long) - Constructor for class loci.formats.in.JPEG2000MetadataParser

Constructs a new JPEG2000MetadataParser.

JPEG2000Reader - Class in loci.formats.in

JPEG2000Reader is the file format reader for JPEG-2000 images.

JPEG2000Reader() - Constructor for class loci.formats.in.JPEG2000Reader

Constructs a new JPEG2000Reader.

JPEG2000SegmentMarker - Enum in loci.formats.codec

An enumeration of JPEG 2000 segment markers.

JPEG2000Writer - Class in loci.formats.out

JPEG2000Writer is the file format writer for JPEG2000 files.

JPEG2000Writer() - Constructor for class loci.formats.out.JPEG2000Writer

Creates a new instance.

JPEG_AC_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEG_DC_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEG_INTERCHANGE_FORMAT - Static variable in class loci.formats.tiff.IFD
 
JPEG_INTERCHANGE_FORMAT_LENGTH - Static variable in class loci.formats.tiff.IFD
 
JPEG_LOSSLESS_PREDICTORS - Static variable in class loci.formats.tiff.IFD
 
JPEG_POINT_TRANSFORMS - Static variable in class loci.formats.tiff.IFD
 
JPEG_PROC - Static variable in class loci.formats.tiff.IFD
 
JPEG_PROC_BASELINE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "JPEGProc" tag.

JPEG_PROC_LOSSLESS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A value to be used with the "JPEGProc" tag.

JPEG_Q_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEG_RESTART_INTERVAL - Static variable in class loci.formats.tiff.IFD
 
JPEG_TABLES - Static variable in class loci.formats.tiff.IFD
 
JPEGCodec - Class in loci.formats.codec

This class implements JPEG compression and decompression.

JPEGCodec() - Constructor for class loci.formats.codec.JPEGCodec
 
JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

ImageWriteParam for JPEG writer.

JPEGParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
JPEGReader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
 
JPEGReader - Class in loci.formats.in

JPEGReader is the file format reader for JPEG images.

JPEGReader() - Constructor for class loci.formats.in.JPEGReader

Constructs a new JPEGReader.

JPEGStreamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

Stream metadata equivalent to a tables-only stream such as in
 the JPEGTables.

JPEGTileDecoder - Class in loci.formats.codec

Source code:
 Trac,
 Gitweb

JPEGTileDecoder() - Constructor for class loci.formats.codec.JPEGTileDecoder
 
JPEGTurboService - Interface in loci.formats.services

Source code:
 Trac,
 Gitweb

JPEGTurboServiceImpl - Class in loci.formats.services

Based upon the NDPI to OME-TIFF converter by Matthias Baldauf:

 http://matthias-baldauf.at/software/ndpi_converter/

 Source code:
 Trac,
 Gitweb

JPEGTurboServiceImpl() - Constructor for class loci.formats.services.JPEGTurboServiceImpl
 
JPEGWriter - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor

The JPEG writer.

JPEGWriter - Class in loci.formats.out

JPEGWriter is the file format writer for JPEG files.

JPEGWriter() - Constructor for class loci.formats.out.JPEGWriter
 
JPKReader - Class in loci.formats.in

JPKReader is the file format reader for JPK Instruments files.

JPKReader() - Constructor for class loci.formats.in.JPKReader

Constructs a new JPK reader.

JPXReader - Class in loci.formats.in

JPXReader is the file format reader for JPX (3D JPEG-2000) images.

JPXReader() - Constructor for class loci.formats.in.JPXReader

Constructs a new JPX Reader.

JUSTIFY - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
jvm64Bit - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating 64-bit JVM (does not support QTJava).

JVM_64BIT_MSG - Static variable in class loci.formats.gui.LegacyQTTools
 




K

key - Variable in class loci.plugins.prefs.Option

Key name for ImageJ preferences file.

KEY_AUTOSCALE - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_COLOR_MODE - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_CONCATENATE - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_CROP - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_FIRST - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_FORCE_THUMBS - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_GROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_ID - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_LOCATION - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_OPEN_ALL_SERIES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_PREFIX - Static variable in class loci.plugins.prefs.Option

Prefix to use for all plugins preferences.

KEY_QUIET - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SHOW_METADATA - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SHOW_OME_XML - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SHOW_ROIS - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPECIFY_RANGES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPLIT_C - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPLIT_T - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SPLIT_Z - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_STACK_FORMAT - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_STACK_ORDER - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_STITCH_TILES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_SWAP_DIMS - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_UNGROUP_FILES - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_UPGRADE_CHECK - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_VIRTUAL - Static variable in class loci.plugins.in.ImporterOptions
 
KEY_WINDOWLESS - Static variable in class loci.plugins.in.ImporterOptions
 
keyPressed(KeyEvent) - Method in class loci.formats.gui.ImageViewer

Handles key presses.

keyReleased(KeyEvent) - Method in class loci.formats.gui.ImageViewer
 
keys(Hashtable<String, Object>) - Static method in class loci.formats.MetadataTools

Gets a sorted list of keys from the given hashtable.

keySet() - Method in class loci.poi.util.BinaryTree

Returns a set view of the keys contained in this map.

keySetByValue() - Method in class loci.poi.util.BinaryTree

Returns a set view of the keys contained in this map.

keyTyped(KeyEvent) - Method in class loci.formats.gui.ImageViewer
 
KH - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the high-pass subband normalization factor

KH - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the high-pass subband normalization factor

KHOROS_MAGIC_BYTES - Static variable in class loci.formats.in.KhorosReader
 
KhorosReader - Class in loci.formats.in

Reader for Khoros XV files.

KhorosReader() - Constructor for class loci.formats.in.KhorosReader

Constructs a new Khoros reader.

kind - Variable in class loci.formats.out.ImageIOWriter
 
kkd_pg - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
kkd_rowid - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
KL - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7

The value of the low-pass subband normalization factor

KL - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7

The value of the low-pass subband normalization factor

KNOWN_VERSIONS - Static variable in class loci.formats.in.LiFlimReader
 
KodakReader - Class in loci.formats.in

KodakReader is the file format reader for Kodak Molecular Imaging .bip files.

KodakReader() - Constructor for class loci.formats.in.KodakReader

Constructs a new Kodak reader.

kryo - Variable in class loci.formats.Memoizer.KryoDeser
 




L

L2DReader - Class in loci.formats.in

L2DReader is the file format reader for Li-Cor L2D datasets.

L2DReader() - Constructor for class loci.formats.in.L2DReader

Construct a new L2D reader.

l2Norm - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn

The L2-norm of the synthesis basis waveform of this subband,
 applicable to "leafs" only.

label - Variable in class loci.plugins.prefs.Option

Label describing the option, for use with ImageJ dialogs.

Label - Class in ome.xml.model
 
Label() - Constructor for class ome.xml.model.Label

Default constructor.

Label(Element, OMEModel) - Constructor for class ome.xml.model.Label

Constructs Label recursively from an XML DOM tree.

Label(Label) - Constructor for class ome.xml.model.Label

Copy constructor.

LabelRecord - Class in loci.poi.hssf.record

Label Record - read only support for strings stored directly in the cell..

LabelRecord() - Constructor for class loci.poi.hssf.record.LabelRecord

Creates new LabelRecord

LabelRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelRecord

Constructs an Label record and sets its fields appropriately.

labels - Variable in class loci.formats.Modulo
 
labels - Variable in class loci.plugins.config.FormatEntry
 
LabelSSTRecord - Class in loci.poi.hssf.record

Title:        Label SST Record

LabelSSTRecord() - Constructor for class loci.poi.hssf.record.LabelSSTRecord
 
LabelSSTRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LabelSSTRecord

Constructs an LabelSST record and sets its fields appropriately.

Laser - Class in ome.xml.model
 
Laser() - Constructor for class ome.xml.model.Laser

Default constructor.

Laser(Element, OMEModel) - Constructor for class ome.xml.model.Laser

Constructs Laser recursively from an XML DOM tree.

Laser(Laser) - Constructor for class ome.xml.model.Laser

Copy constructor.

LaserMedium - Enum in ome.xml.model.enums
 
LaserMediumEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LaserMedium.

LaserMediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserMediumEnumHandler
 
LaserType - Enum in ome.xml.model.enums
 
LaserTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LaserType.

LaserTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LaserTypeEnumHandler
 
lastId - Variable in class loci.formats.gui.PreviewPane

Last ID loaded.

lastIndexOf(double) - Method in class loci.poi.util.DoubleList

Returns the index in this list of the last occurrence of the
 specified element, or -1 if this list does not contain this
 element.

lastIndexOf(int) - Method in class loci.poi.util.IntList

Returns the index in this list of the last occurrence of the
 specified element, or -1 if this list does not contain this
 element.

lastIndexOf(short) - Method in class loci.poi.util.ShortList

Returns the index in this list of the last occurrence of the
 specified element, or -1 if this list does not contain this
 element.

lastLengthPos - Variable in class loci.poi.hssf.record.UnicodeString.UnicodeRecordStats
 
lastModified() - Method in class loci.common.Location

Return the last modification time of this file, in milliseconds since
 the UNIX epoch.

lastPlane - Variable in class loci.formats.in.BaseZeissReader
 
lastPlane - Variable in class loci.formats.in.MinimalTiffReader
 
LATEST_VERSION - Static variable in class loci.formats.services.OMEXMLServiceImpl

Latest OME-XML version namespace.

LATITUDE_REF_NORTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLatitudeRef" and
 "GPSDestLatitudeRef" tags.

LATITUDE_REF_SOUTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLatitudeRef" and
 "GPSDestLatitudeRef" tags.

layerIdx - Variable in class jj2000.j2k.codestream.reader.PktInfo

The layer associated with the current code-block in this packet.

layers - Variable in class loci.formats.in.BaseZeissReader
 
layers - Variable in class loci.formats.in.ZeissTIFFHandler
 
LayersInfo - Class in jj2000.j2k.entropy.encoder

This class stores the specification of a layer distribution in the
 bit stream.

LayersInfo(float) - Constructor for class jj2000.j2k.entropy.encoder.LayersInfo

Creates a new LayersInfo object.

LAYOUT_TABLE - Static variable in class loci.formats.in.LiFlimReader
 
lblockNo - Variable in class loci.formats.in.SDTInfo

Long blockNo - see remarks below.

lcm(int, int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Least Common Multiple (LCM) of two strictly
 positive integer numbers.

lcm(int[]) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the Least Common Multiple (LCM) of several
 positive integer numbers.

lcoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
 
lcod - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
 
lcom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM
 
lcrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG
 
lcs - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

The length calculation specifications

LCS_CALIBRATED_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
LCS_sRGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
LCS_WINDOWS_COLOR_SPACE - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
 
Leader - Class in ome.xml.model
 
Leader() - Constructor for class ome.xml.model.Leader

Default constructor.

Leader(Element, OMEModel) - Constructor for class ome.xml.model.Leader

Constructs Leader recursively from an XML DOM tree.

Leader(Leader) - Constructor for class ome.xml.model.Leader

Copy constructor.

LEAST_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Least Dots

LEFT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
LeftMargin - Static variable in class loci.poi.hssf.model.Sheet
 
LeftMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet
 
LeftMarginRecord - Class in loci.poi.hssf.record

Record for the left margin.

LeftMarginRecord() - Constructor for class loci.poi.hssf.record.LeftMarginRecord
 
LeftMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LeftMarginRecord

Constructs a LeftMargin record and sets its fields appropriately.

legacy - Variable in class loci.formats.out.QTWriter

Legacy QuickTime writer.

LegacyND2Reader - Class in loci.formats.in

LegacyND2Reader is a file format reader for Nikon ND2 files that uses
 the Nikon ND2 SDK - it is only usable on Windows machines.

LegacyND2Reader() - Constructor for class loci.formats.in.LegacyND2Reader
 
LegacyQTReader - Class in loci.formats.in

LegacyQTReader is a file format reader for QuickTime movie files.

LegacyQTReader() - Constructor for class loci.formats.in.LegacyQTReader

Constructs a new QT reader.

LegacyQTTools - Class in loci.formats.gui

Utility class for working with QuickTime for Java.

LegacyQTTools() - Constructor for class loci.formats.gui.LegacyQTTools
 
LegacyQTWriter - Class in loci.formats.out

LegacyQTWriter is a file format writer for QuickTime movies.

LegacyQTWriter() - Constructor for class loci.formats.out.LegacyQTWriter
 
legacyReader - Variable in class loci.formats.DelegateReader

Legacy reader.

legacyReaderInitialized - Variable in class loci.formats.DelegateReader

Flag indicating that the legacy reader was successfully initialized.

LEGAL_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
LegendRecord - Class in loci.poi.hssf.record

Defines a legend for a chart.

LegendRecord() - Constructor for class loci.poi.hssf.record.LegendRecord
 
LegendRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LegendRecord

Constructs a Legend record and sets its fields appropriately.

LEI_SUFFIX - Static variable in class loci.formats.in.LeicaReader
 
LeicaHandler - Class in loci.formats.in

SAX handler for parsing XML in Leica LIF and Leica TCS files.

LeicaHandler(MetadataStore, MetadataLevel) - Constructor for class loci.formats.in.LeicaHandler
 
LeicaReader - Class in loci.formats.in

LeicaReader is the file format reader for Leica files.

LeicaReader() - Constructor for class loci.formats.in.LeicaReader

Constructs a new Leica reader.

LeicaSCNReader - Class in loci.formats.in

LeicaSCNReader is the file format reader for Leica SCN TIFF files.

LeicaSCNReader() - Constructor for class loci.formats.in.LeicaSCNReader

Constructs a new LeicaSCN reader.

len - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

Length of each piece of code-block's codewords

length() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream

Returns the number of bytes currently in the FileChannel.

length() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream

Returns the number of bytes currently in the FileChannel.

length() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
length() - Method in class com.sun.media.imageio.stream.SegmentedImageInputStream
 
length - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box

Box length, extra length, type and content data array

length() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO

Returns the length of the data stream.

length() - Method in class jj2000.j2k.io.BufferedRandomAccessFile

Returns the current length of the stream, in bytes, taking into
 account any buffering.

length() - Method in interface jj2000.j2k.io.RandomAccessIO

Returns the current length of the stream, in bytes, taking into account
 any buffering.

length() - Method in class jj2000.j2k.util.ISRandomAccessIO

Returns the length of the stream.

length() - Method in class loci.common.ByteArrayHandle
 
length() - Method in class loci.common.FileHandle
 
length() - Method in interface loci.common.IRandomAccess

Returns the length of this stream.

length() - Method in class loci.common.Location
 
length() - Method in class loci.common.NIOFileHandle
 
length() - Method in class loci.common.NIOInputStream

Gets the number of bytes in the file.

length - Variable in class loci.common.RandomAccessInputStream
 
length() - Method in class loci.common.RandomAccessInputStream

Gets the number of bytes in the file.

length() - Method in class loci.common.RandomAccessOutputStream

Returns the length of the file.

length - Variable in class loci.common.StreamHandle

Length of the stream.

length() - Method in class loci.common.StreamHandle
 
length() - Method in class loci.formats.cache.CacheStrategy

Shortcut for computing total number of positions.

length() - Method in class loci.formats.Modulo
 
LENGTH - Static variable in class loci.poi.hpsf.ClassID

The number of bytes occupied by this object in the byte
 stream.

length() - Method in class loci.poi.hpsf.ClassID
 
length() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
 
length() - Method in class loci.poi.poifs.filesystem.POIFSDocumentPath
 
Length - Class in mdbtools.dbengine.functions

Length is the sql length function
 When passed a string it returns the length of the string

Length() - Constructor for class mdbtools.dbengine.functions.Length
 
length() - Method in class mdbtools.examples.MemoryRandomAccess
 
length() - Method in class mdbtools.jdbc2.File
 
length() - Method in interface mdbtools.publicapi.RandomAccess
 
LENGTH_0 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 0 bytes.

LENGTH_2 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 2 bytes.

LENGTH_4 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 4 bytes.

LENGTH_8 - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length of 8 bytes.

LENGTH_LAZY - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for the lazy length calculation.

LENGTH_LAZY_GOOD - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for a very simple length calculation.

LENGTH_NEAR_OPT - Static variable in class jj2000.j2k.entropy.encoder.MQCoder

Identifier for the near optimal length calculation.

LENGTH_UNKNOWN - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a length that is unknown to HPSF yet.

LENGTH_VARIABLE - Static variable in class loci.poi.hpsf.Variant

Denotes a variant type with a variable length.

lengths - Variable in class loci.formats.cache.CacheStrategy

Length of each dimensional axis.

LEO_TAG - Static variable in class loci.formats.in.LEOReader
 
LEOReader - Class in loci.formats.in

LEOReader is the file format reader for LEO EM files.

LEOReader() - Constructor for class loci.formats.in.LEOReader

Constructs a new LEO reader.

LESS_DOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

Less Dots

LESS_THAN - Static variable in class mdbtools.dbengine.sql.Equation
 
LESS_THAN_OR_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation
 
LessEqualPtg - Class in loci.poi.hssf.record.formula

Ptg class to implement less than or equal

LessEqualPtg() - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg

Creates new LessEqualPtg

LessEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessEqualPtg
 
LessThanPtg - Class in loci.poi.hssf.record.formula

Less than operator PTG "<".

LessThanPtg() - Constructor for class loci.poi.hssf.record.formula.LessThanPtg

Constructor.

LessThanPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.LessThanPtg

Constructor.

LETTER_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
 
level - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
 
level - Variable in class jj2000.j2k.wavelet.Subband

The level in the tree to which this subband belongs, which is the
 number of wavelet decompositions performed to produce this subband.

lh - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child LH

libClass - Variable in class loci.plugins.config.LibraryEntry
 
LibraryChecker - Class in loci.plugins.util

Utility methods for verifying that classes
 are present and versions are correct.

LibraryChecker.Library - Enum in loci.plugins.util

List of possible libraries for which to check.

LibraryEntry - Class in loci.plugins.config

A list entry for the configuration window's Libraries tab.

LibraryEntry(PrintWriter, HashMap<String, String>) - Constructor for class loci.plugins.config.LibraryEntry
 
LibraryEntry(PrintWriter, String, String, String, String, String, String, String) - Constructor for class loci.plugins.config.LibraryEntry
 
license - Variable in class loci.plugins.config.LibraryEntry
 
LICENSE_PROPERTY - Static variable in class loci.formats.services.LuraWaveServiceImpl

System property to check for the LuraWave license code.

LIF_MAGIC_BYTE - Static variable in class loci.formats.in.LIFReader
 
LIF_MEMORY_BYTE - Static variable in class loci.formats.in.LIFReader
 
LIFETIME - Static variable in class loci.formats.FormatTools

Identifies the Lifetime dimensional type,
 representing a dimension consisting of a lifetime histogram.

LIFF_MAGIC_BYTES - Static variable in class loci.formats.in.OpenlabReader
 
LiFlimReader - Class in loci.formats.in

LiFlimReader is the file format reader for LI-FLIM files.

LiFlimReader() - Constructor for class loci.formats.in.LiFlimReader

Constructs a new LI-FLIM reader.

LIFReader - Class in loci.formats.in

LIFReader is the file format reader for Leica LIF files.

LIFReader() - Constructor for class loci.formats.in.LIFReader

Constructs a new Leica LIF reader.

LIGHT_SOURCE - Static variable in class loci.formats.tiff.IFD
 
LIGHT_SOURCE_CLOUDY_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_COOL_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D50 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D55 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D65 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_D75 - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAY_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAYLIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_DAYLIGHT_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FINE_WEATHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FLASH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_ISO_STUDIO_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_SHADE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_A - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_STANDARD_LIGHT_C - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_TUNGSTEN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LIGHT_SOURCE_WHITE_FLUORESCENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "LightSource" tag.

LightEmittingDiode - Class in ome.xml.model
 
LightEmittingDiode() - Constructor for class ome.xml.model.LightEmittingDiode

Default constructor.

LightEmittingDiode(Element, OMEModel) - Constructor for class ome.xml.model.LightEmittingDiode

Constructs LightEmittingDiode recursively from an XML DOM tree.

LightEmittingDiode(LightEmittingDiode) - Constructor for class ome.xml.model.LightEmittingDiode

Copy constructor.

LightPath - Class in ome.xml.model
 
LightPath() - Constructor for class ome.xml.model.LightPath

Default constructor.

LightPath(Element, OMEModel) - Constructor for class ome.xml.model.LightPath

Constructs LightPath recursively from an XML DOM tree.

LightPath(LightPath) - Constructor for class ome.xml.model.LightPath

Copy constructor.

LightSource - Class in ome.xml.model
 
LightSource() - Constructor for class ome.xml.model.LightSource

Default constructor.

LightSource(Element, OMEModel) - Constructor for class ome.xml.model.LightSource

Constructs LightSource recursively from an XML DOM tree.

LightSource(LightSource) - Constructor for class ome.xml.model.LightSource

Copy constructor.

LightSourceSettings - Class in ome.xml.model
 
LightSourceSettings() - Constructor for class ome.xml.model.LightSourceSettings

Default constructor.

LightSourceSettings(Element, OMEModel) - Constructor for class ome.xml.model.LightSourceSettings

Constructs LightSourceSettings recursively from an XML DOM tree.

LightSourceSettings(LightSourceSettings) - Constructor for class ome.xml.model.LightSourceSettings

Copy constructor.

LIMReader - Class in loci.formats.in

LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.

LIMReader() - Constructor for class loci.formats.in.LIMReader

Constructs a new LIM reader.

Line - Class in ome.xml.model
 
Line() - Constructor for class ome.xml.model.Line

Default constructor.

Line(Element, OMEModel) - Constructor for class ome.xml.model.Line

Constructs Line recursively from an XML DOM tree.

Line(Line) - Constructor for class ome.xml.model.Line

Copy constructor.

LINE_OF_STRAIGHT_SEGMENTS - Static variable in class loci.poi.ddf.EscherShapePathProperty
 
LINE_PATTERN_DARK_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DASH - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DASH_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_DOT - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_LIGHT_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_MEDIUM_GRAY_PATTERN - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_NONE - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LINE_PATTERN_SOLID - Static variable in class loci.poi.hssf.record.LineFormatRecord
 
LineCap - Enum in ome.xml.model.enums
 
LineCapEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for LineCap.

LineCapEnumHandler() - Constructor for class ome.xml.model.enums.handlers.LineCapEnumHandler
 
linediv - Variable in class loci.formats.in.SDTInfo

Line predivider = 2 ** (linediv).

LineFormatRecord - Class in loci.poi.hssf.record

Describes a line format record.

LineFormatRecord() - Constructor for class loci.poi.hssf.record.LineFormatRecord
 
LineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LineFormatRecord

Constructs a LineFormat record and sets its fields appropriately.

LineShape - Class in loci.poi.hssf.model

Represents a line shape and creates all the line specific low level records.

LINESTYLE__ANYLINE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__ARROWHEADSOK - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__BACKCOLOR - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__COLOR - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__CRMOD - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLBLIP - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLBLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLBLIPNAME - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLDZTYPE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLHEIGHT - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__FILLWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__HITLINETEST - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEDASHING - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEDASHSTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEENDCAPSTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEESTARTARROWLENGTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEFILLSHAPE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEJOINSTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEMITERLIMIT - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINESTARTARROWHEAD - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINESTARTARROWWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINESTYLE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINETYPE - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__LINEWIDTH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__NOLINEDRAWDASH - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE__OPACITY - Static variable in class loci.poi.ddf.EscherProperties
 
LINESTYLE_DASHDOTDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHDOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DASHSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_DOTSYS - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_LONGDASHDOTDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_LONGDASHDOTGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_LONGDASHGEL - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINESTYLE_SOLID - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
lineTo(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
LINEWIDTH_DEFAULT - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
LINEWIDTH_ONE_PT - Static variable in class loci.poi.hssf.usermodel.HSSFShape
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.AbstractOMEModelObject
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.AffineTransform
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Annotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.AnnotationRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Arc
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BasicAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryFile
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BinaryOnly
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BinData
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.BooleanAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Channel
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ChannelRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.CommentAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Dataset
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DatasetRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Detector
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DetectorSettings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Dichroic
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DichroicRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.DoubleAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Ellipse
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.EmissionFilterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExcitationFilterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Experiment
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Experimenter
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroup
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterGroupRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimenterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ExperimentRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.External
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Filament
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FileAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Filter
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSet
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.FilterSetRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Image
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ImageRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ImagingEnvironment
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Instrument
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.InstrumentRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Label
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Laser
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Leader
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightEmittingDiode
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightPath
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSource
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LightSourceSettings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Line
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ListAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.LongAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ManufacturerSpec
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Mask
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.MetadataOnly
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.MicrobeamManipulationRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Microscope
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.NumericAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Objective
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ObjectiveSettings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.OME
 
link(Reference, OMEModelObject) - Method in interface ome.xml.model.OMEModelObject

Link a given OME model object to this model object.

link(Reference, OMEModelObject) - Method in class ome.xml.model.Pixels
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Plane
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Plate
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateAcquisition
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.PlateRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Point
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Polygon
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Polyline
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Project
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ProjectRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Pump
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Reagent
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ReagentRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Rectangle
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Reference
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Rights
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ROI
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.ROIRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Screen
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Settings
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Shape
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.StageLabel
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.StructuredAnnotations
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TagAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TermAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TextAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TiffData
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TimestampAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TransmittanceRange
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.TypeAnnotation
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Union
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.UUID
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.Well
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSample
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.WellSampleRef
 
link(Reference, OMEModelObject) - Method in class ome.xml.model.XMLAnnotation
 
LINK_TYPE_CATEGORIES - Static variable in class loci.poi.hssf.record.LinkedDataRecord
 
LINK_TYPE_TITLE_OR_TEXT - Static variable in class loci.poi.hssf.record.LinkedDataRecord
 
LINK_TYPE_VALUES - Static variable in class loci.poi.hssf.record.LinkedDataRecord
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Annotation
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Channel
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Dataset
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Experimenter
 
linkAnnotation(Annotation) - Method in class ome.xml.model.ExperimenterGroup
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Image
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Pixels
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Plane
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Plate
 
linkAnnotation(Annotation) - Method in class ome.xml.model.PlateAcquisition
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Project
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Reagent
 
linkAnnotation(Annotation) - Method in class ome.xml.model.ROI
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Screen
 
linkAnnotation(Annotation) - Method in class ome.xml.model.Well
 
linkAnnotation(Annotation) - Method in class ome.xml.model.WellSample
 
linkChannel(Channel) - Method in class ome.xml.model.Annotation
 
linkChannel(Channel) - Method in class ome.xml.model.FilterSet
 
linkDataset(Dataset) - Method in class ome.xml.model.Annotation
 
linkDataset(Dataset) - Method in class ome.xml.model.Experimenter
 
linkDataset(Dataset) - Method in class ome.xml.model.ExperimenterGroup
 
linkDataset(Dataset) - Method in class ome.xml.model.Image
 
linkDataset(Dataset) - Method in class ome.xml.model.Project
 
linkDichroic(Dichroic) - Method in class ome.xml.model.FilterSet
 
linkDichroic(Dichroic) - Method in class ome.xml.model.LightPath
 
LinkedDataFormulaField - Class in loci.poi.hssf.record

Not implemented yet.

LinkedDataFormulaField() - Constructor for class loci.poi.hssf.record.LinkedDataFormulaField
 
LinkedDataRecord - Class in loci.poi.hssf.record

Describes a linked data record.

LinkedDataRecord() - Constructor for class loci.poi.hssf.record.LinkedDataRecord
 
LinkedDataRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.LinkedDataRecord

Constructs a LinkedData record and sets its fields appropriately.

linkEmissionFilter(Filter) - Method in class ome.xml.model.FilterSet
 
linkEmissionFilter(Filter) - Method in class ome.xml.model.LightPath
 
linkExcitationFilter(Filter) - Method in class ome.xml.model.FilterSet
 
linkExcitationFilter(Filter) - Method in class ome.xml.model.LightPath
 
linkExperiment(Experiment) - Method in class ome.xml.model.Experimenter
 
linkExperiment(Experiment) - Method in class ome.xml.model.Image
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Annotation
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Dataset
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Experiment
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.ExperimenterGroup
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Image
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.MicrobeamManipulation
 
linkExperimenter(Experimenter) - Method in class ome.xml.model.Project
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Annotation
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Dataset
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Experimenter
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Image
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Leader
 
linkExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.Project
 
linkFilterSet(FilterSet) - Method in class ome.xml.model.Channel
 
linkFilterSet(FilterSet) - Method in class ome.xml.model.Dichroic
 
linkFilterSetEmissionFilter(FilterSet) - Method in class ome.xml.model.Filter
 
linkFilterSetExcitationFilter(FilterSet) - Method in class ome.xml.model.Filter
 
linkImage(Image) - Method in class ome.xml.model.Annotation
 
linkImage(Image) - Method in class ome.xml.model.Dataset
 
linkImage(Image) - Method in class ome.xml.model.Experiment
 
linkImage(Image) - Method in class ome.xml.model.Experimenter
 
linkImage(Image) - Method in class ome.xml.model.ExperimenterGroup
 
linkImage(Image) - Method in class ome.xml.model.Instrument
 
linkImage(Image) - Method in class ome.xml.model.MicrobeamManipulation
 
linkImage(Image) - Method in class ome.xml.model.ROI
 
linkImage(Image) - Method in class ome.xml.model.WellSample
 
linkInstrument(Instrument) - Method in class ome.xml.model.Image
 
linkLaser(Laser) - Method in class ome.xml.model.Pump
 
linkLeader(Experimenter) - Method in class ome.xml.model.ExperimenterGroup
 
linkLightPath(LightPath) - Method in class ome.xml.model.Dichroic
 
linkLightPathEmissionFilter(LightPath) - Method in class ome.xml.model.Filter
 
linkLightPathExcitationFilter(LightPath) - Method in class ome.xml.model.Filter
 
linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experimenter
 
linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Image
 
linkMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.ROI
 
linkPixels(Pixels) - Method in class ome.xml.model.Annotation
 
linkPlane(Plane) - Method in class ome.xml.model.Annotation
 
linkPlate(Plate) - Method in class ome.xml.model.Annotation
 
linkPlate(Plate) - Method in class ome.xml.model.Screen
 
linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Annotation
 
linkPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.WellSample
 
linkProject(Project) - Method in class ome.xml.model.Annotation
 
linkProject(Project) - Method in class ome.xml.model.Dataset
 
linkProject(Project) - Method in class ome.xml.model.Experimenter
 
linkProject(Project) - Method in class ome.xml.model.ExperimenterGroup
 
linkPump(LightSource) - Method in class ome.xml.model.Laser
 
linkReagent(Reagent) - Method in class ome.xml.model.Annotation
 
linkReagent(Reagent) - Method in class ome.xml.model.Well
 
linkROI(ROI) - Method in class ome.xml.model.Annotation
 
linkROI(ROI) - Method in class ome.xml.model.Image
 
linkROI(ROI) - Method in class ome.xml.model.MicrobeamManipulation
 
linkScreen(Screen) - Method in class ome.xml.model.Annotation
 
linkScreen(Screen) - Method in class ome.xml.model.Plate
 
linkWell(Well) - Method in class ome.xml.model.Annotation
 
linkWell(Well) - Method in class ome.xml.model.Reagent
 
linkWellSample(WellSample) - Method in class ome.xml.model.Annotation
 
linkWellSample(WellSample) - Method in class ome.xml.model.Image
 
linkWellSample(WellSample) - Method in class ome.xml.model.PlateAcquisition
 
list(boolean) - Method in class loci.common.Location

Return a list of all of the files in this directory.

list() - Method in class loci.common.Location

Return a list of file names in this directory.

List2d - Class in loci.poi.util

Provides an interface for interacting with 2d arrays of objects.

List2d() - Constructor for class loci.poi.util.List2d
 
ListAnnotation - Class in ome.xml.model
 
ListAnnotation() - Constructor for class ome.xml.model.ListAnnotation

Default constructor.

ListAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.ListAnnotation

Constructs ListAnnotation recursively from an XML DOM tree.

ListAnnotation(ListAnnotation) - Constructor for class ome.xml.model.ListAnnotation

Copy constructor.

listeners - Variable in class loci.formats.cache.Cache

List of cache event listeners.

listeners - Variable in class loci.formats.cache.CacheStrategy

List of cache event listeners.

listeners - Variable in class loci.plugins.in.ImagePlusReader
 
listeners() - Method in class loci.poi.hssf.eventmodel.EventRecordFactory

used for unit tests to test the registration of record listeners.

listFiles() - Method in class loci.common.Location

Return a list of absolute files in this directory.

listing - Variable in class loci.common.Location.ListingsResult
 
ListManagedBlock - Interface in loci.poi.poifs.storage

An interface for blocks managed by a list that works with a
 BlockAllocationTable to keep block sequences straight

LITTLE - Static variable in class loci.formats.tiff.TiffConstants
 
LITTLE_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType

Identifier for little-endian byte ordering (i.e.

LITTLE_ENDIAN - Static variable in class loci.formats.tiff.IFD
 
littleEndian - Variable in class loci.formats.codec.CodecOptions

Indicates endianness of pixel data.

littleEndian - Variable in class loci.formats.CoreMetadata

Indicates whether or not each pixel's bytes are in little endian order.

littleEndian - Variable in class loci.formats.tools.AmiraParameters
 
LittleEndian - Class in loci.poi.util

a utility class for handling little-endian numbers, which the 80x86 world is
  replete with.

LittleEndian.BufferUnderrunException - Exception in loci.poi.util

Exception to handle buffer underruns

LittleEndianConsts - Interface in loci.poi.util

a repository for constants shared by classes within this package

ll - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask

The subband masks of the child LL

LM_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the light microscopy domain.

LoadData - Class in mdbtools.dbengine.tasks

Load any data from a table into data

LoadData(Table) - Constructor for class mdbtools.dbengine.tasks.LoadData
 
loader - Variable in class loci.common.ReflectedUniverse

Deprecated.
Class loader for imported classes.

LOADER - Static variable in class loci.formats.gui.LegacyQTTools

This custom class loader searches additional paths for the QTJava.zip
 library.

loader - Variable in class loci.formats.gui.PreviewPane

Thumbnail loading thread.

loaderAlive - Variable in class loci.formats.gui.PreviewPane

Flag indicating whether loader thread should keep running.

loadId - Variable in class loci.formats.gui.PreviewPane

Current ID to load.

loadImage(Image) - Static method in class loci.formats.gui.AWTImageTools

Ensures the given AWT image is fully loaded.

loadLibrary() - Static method in class jj2000.j2k.util.NativeServices

Loads the shared library implementing the native methods of this
 class and returns true on success.

loadMemo() - Method in class loci.formats.Memoizer
 
loadOption() - Method in class loci.plugins.prefs.BooleanOption
 
loadOption() - Method in class loci.plugins.prefs.DoubleOption
 
loadOption() - Method in class loci.plugins.prefs.Option

Loads the option's value from the ImageJ preferences file.

loadOption() - Method in class loci.plugins.prefs.StringOption
 
loadOptions() - Method in class loci.plugins.prefs.OptionsList

Loads option values from the ImageJ preferences file.

loadReader() - Method in interface loci.formats.Memoizer.Deser
 
loadReader() - Method in class loci.formats.Memoizer.KryoDeser
 
loadReleaseVersion() - Method in interface loci.formats.Memoizer.Deser
 
loadReleaseVersion() - Method in class loci.formats.Memoizer.KryoDeser
 
loadRevision() - Method in interface loci.formats.Memoizer.Deser
 
loadRevision() - Method in class loci.formats.Memoizer.KryoDeser
 
loadStart(File) - Method in interface loci.formats.Memoizer.Deser
 
loadStart(File) - Method in class loci.formats.Memoizer.KryoDeser
 
loadStop() - Method in interface loci.formats.Memoizer.Deser
 
loadStop() - Method in class loci.formats.Memoizer.KryoDeser
 
loadThumb(BufferedImageReader, int, Panel, boolean) - Static method in class loci.plugins.in.ThumbLoader
 
loadVersion() - Method in interface loci.formats.Memoizer.Deser
 
loadVersion() - Method in class loci.formats.Memoizer.KryoDeser
 
localColorTable - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
Location - Class in loci.common

Pseudo-extension of java.io.File that supports reading over HTTP (among
 other things).

Location(String) - Constructor for class loci.common.Location
 
Location(File) - Constructor for class loci.common.Location
 
Location(String, String) - Constructor for class loci.common.Location
 
Location(Location, String) - Constructor for class loci.common.Location
 
Location.ListingsResult - Class in loci.common
 
LOCATION_HTTP - Static variable in class loci.plugins.in.ImporterOptions
 
LOCATION_LOCAL - Static variable in class loci.plugins.in.ImporterOptions
 
LOCATION_OMERO - Static variable in class loci.plugins.in.ImporterOptions
 
LocationDialog - Class in loci.plugins.in

Bio-Formats Importer location chooser dialog box.

LocationDialog(ImportProcess) - Constructor for class loci.plugins.in.LocationDialog

Creates a location chooser dialog for the Bio-Formats Importer.

loci.common - package loci.common
 
loci.common.enumeration - package loci.common.enumeration
 
loci.common.services - package loci.common.services
 
loci.common.xml - package loci.common.xml
 
loci.formats - package loci.formats

Bio-Formats: a library for reading and writing popular microscopy file
formats.

loci.formats.cache - package loci.formats.cache

Package containing Bio-Formats caching logic, for managing
subsets of large collections of image planes in memory.

loci.formats.codec - package loci.formats.codec

Package containing Bio-Formats compression and decompression logic.

loci.formats.gui - package loci.formats.gui

Package containing Bio-Formats graphical user interface code.

loci.formats.in - package loci.formats.in

Package containing Bio-Formats file format readers.

loci.formats.meta - package loci.formats.meta

Package containing core Bio-Formats metadata interfaces for the OME data model.

loci.formats.ome - package loci.formats.ome

Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download.

loci.formats.out - package loci.formats.out

Package containing Bio-Formats file format writers.

loci.formats.services - package loci.formats.services
 
loci.formats.tiff - package loci.formats.tiff

Package containing Bio-Formats TIFF code of general utility.

loci.formats.tools - package loci.formats.tools

Package containing utility methods corresponding
to the Bio-Formats command line tools.

loci.plugins - package loci.plugins

Bio-Formats Plugins: a collection of plugins for ImageJ, including the
Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions,
Data Browser and Stack Slicer.

loci.plugins.config - package loci.plugins.config

Bio-Formats Plugins Configuration plugin for ImageJ.

loci.plugins.in - package loci.plugins.in

Bio-Formats Importer plugin for ImageJ.

loci.plugins.macro - package loci.plugins.macro

Bio-Formats Macro Extensions plugin for ImageJ.

loci.plugins.out - package loci.plugins.out

Bio-Formats Exporter plugin for ImageJ.

loci.plugins.prefs - package loci.plugins.prefs

Classes for managing Bio-Formats plugins preferences.

loci.plugins.shortcut - package loci.plugins.shortcut

Bio-Formats Plugins Shortcut Window plugin for ImageJ.

loci.plugins.util - package loci.plugins.util

Utility classes and methods for the Bio-Formats plugins for ImageJ.

loci.poi - package loci.poi
 
loci.poi.ddf - package loci.poi.ddf

This package contains classes for decoding the Microsoft Office
       Drawing format otherwise known as escher henceforth known in POI
       as the Dreadful Drawing Format.

loci.poi.dev - package loci.poi.dev
 
loci.poi.hpsf - package loci.poi.hpsf



loci.poi.hpsf.wellknown - package loci.poi.hpsf.wellknown


   Specific support for DocumentSummaryInformation, SummaryInformation types.

loci.poi.hssf.dev - package loci.poi.hssf.dev

DEV package serves two purposes.

loci.poi.hssf.eventmodel - package loci.poi.hssf.eventmodel
 
loci.poi.hssf.eventusermodel - package loci.poi.hssf.eventusermodel

HSSF eventmodel Package provides an event-based API for reading HSSF files.

loci.poi.hssf.extractor - package loci.poi.hssf.extractor
 
loci.poi.hssf.model - package loci.poi.hssf.model

Provides low level API structures for reading, writing, modifying XLS files.

loci.poi.hssf.record - package loci.poi.hssf.record

Record package contains class representations for XLS binary strutures.

loci.poi.hssf.record.aggregates - package loci.poi.hssf.record.aggregates

record aggregates are not real "records" but collections of records that act as a single record.

loci.poi.hssf.record.formula - package loci.poi.hssf.record.formula

formula package contains binary PTG structures used in Formulas

loci.poi.hssf.usermodel - package loci.poi.hssf.usermodel

usermodel package maps HSSF low level strutures to familiar workbook/sheet model

loci.poi.hssf.util - package loci.poi.hssf.util

util package contains tools needed for writing HSSF files that are not necesarily "real" 
HSSF concepts.

loci.poi.poifs.common - package loci.poi.poifs.common

common package contains constants and other classes shared across all POIFS subpackages

loci.poi.poifs.dev - package loci.poi.poifs.dev

DEV package serves two purposes.

loci.poi.poifs.eventfilesystem - package loci.poi.poifs.eventfilesystem

The eventfilesystem is an efficient method for reading OLE 2 CDF files.

loci.poi.poifs.filesystem - package loci.poi.poifs.filesystem

filesystem package maps OLE 2 Compound document files to a more familiar filesystem interface.

loci.poi.poifs.property - package loci.poi.poifs.property

property package contains high and low level Property structures for POIFS.

loci.poi.poifs.storage - package loci.poi.poifs.storage

storage package contains low level binary structures for POIFS's implementation of the OLE 2
Compound Document Format.

loci.poi.util - package loci.poi.util

Top-level util package are classes that are useful throughout the project.

loci.tests - package loci.tests

Base package for automated and manual testing of the Bio-Formats software packages.

loci.tests.testng - package loci.tests.testng

Package for automated testing of the Bio-Formats software packages using TestNG.

LociConfig - Class in loci.plugins.config

An ImageJ plugin for displaying the Bio-Formats plugins configuration dialog.

LociConfig() - Constructor for class loci.plugins.config.LociConfig
 
LociExporter - Class in loci.plugins

ImageJ plugin for writing files using the OME Bio-Formats package.

LociExporter() - Constructor for class loci.plugins.LociExporter
 
LociFunctions - Class in loci.plugins.macro

This class provides macro extensions in ImageJ for Bio-Formats.

LociFunctions() - Constructor for class loci.plugins.macro.LociFunctions
 
LociImporter - Class in loci.plugins

ImageJ plugin for reading files using the OME Bio-Formats package.

LociImporter() - Constructor for class loci.plugins.LociImporter
 
LociInstaller - Class in loci.plugins.config

An ImageJ plugin for installing and upgrading libraries
 related to the Bio-Formats plugins.

LociInstaller() - Constructor for class loci.plugins.config.LociInstaller
 
LociPrefs - Class in loci.plugins.util

Utility methods for ImageJ preferences for Bio-Formats plugins.

LOG - Static variable in interface jj2000.j2k.util.MsgLogger

Severity of message.

log() - Method in class loci.plugins.util.RecordedImageProcessor
 
log(int, Object) - Method in class loci.poi.util.CommonsLogger

Log a message

log(int, Object) - Method in class loci.poi.util.NullLogger

Log a message

log(int, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message

log(int, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.NullLogger

Log a message.

log(int, Object) - Method in class loci.poi.util.POILogger
 
log(int, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message

log(int, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object, Object, Object, Object, Object, Object, Object, Object, Throwable) - Method in class loci.poi.util.POILogger

Log a message.

log(int, Object) - Method in class loci.poi.util.SystemOutLogger

Log a message

log2(int) - Static method in class jj2000.j2k.util.MathUtil

Method that calculates the floor of the log, base 2,
 of 'x'.

Log4jTools - Class in loci.common

A utility class with convenience methods for log4j.

LogbackTools - Class in loci.common

A utility class with convenience methods for logback.

logFormatted(int, String, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.NullLogger

Logs a formated message.

logFormatted(int, String, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

logFormatted(int, String, Object, Object, Object, Object) - Method in class loci.poi.util.POILogger

Logs a formated message.

LOGGER - Static variable in class loci.formats.codec.BaseCodec
 
LOGGER - Static variable in class loci.formats.codec.JPEGTileDecoder
 
LOGGER - Static variable in class loci.formats.FormatHandler
 
LOGGER - Static variable in class loci.formats.FormatTools
 
LOGGER - Static variable in class loci.formats.in.BaseTiffReader

Logger for this class.

logger - Variable in class loci.poi.POIDocument

For our own logging use

LOGGER - Static variable in class ome.xml.meta.AbstractOMEXMLMetadata
 
logicalScreenHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
logicalScreenWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
LONG_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader
 
LONG_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
 
LongAnnotation - Class in ome.xml.model
 
LongAnnotation() - Constructor for class ome.xml.model.LongAnnotation

Default constructor.

LongAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.LongAnnotation

Constructs LongAnnotation recursively from an XML DOM tree.

LongAnnotation(LongAnnotation) - Constructor for class ome.xml.model.LongAnnotation

Copy constructor.

LongField - Class in loci.poi.util

representation of a long (16-bit) field at a fixed location within
 a byte array

LongField(int) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing
 byte array

LongField(int, long) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing
 byte array and initialize its value

LongField(int, byte[]) - Constructor for class loci.poi.util.LongField

Construct the LongField with its offset into its containing
 byte array and initialize its value from its byte array

LongField(int, long, byte[]) - Constructor for class loci.poi.util.LongField

construct the LongField with its offset into its containing
 byte array, initialize its value, and write the value to a byte
 array

LONGITUDE_REF_EAST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLongitudeRef" and
 "GPSDestLongitudeRef" tags.

LONGITUDE_REF_WEST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSLongitudeRef" and
 "GPSDestLongitudeRef" tags.

longsToBytes(long[], boolean) - Static method in class loci.common.DataTools

Translates an array of long values into an array of byte values.

longToBytes(long, boolean) - Static method in class loci.common.DataTools

Translates the long value into an array of eight bytes.

longValue() - Method in class loci.formats.tiff.TiffRational

Returns the value of the specified number as a long.

lookup - Variable in class loci.formats.in.PictReader

Color lookup table for palette color images.

lookupIndex(String) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
lookupName(short) - Method in class loci.poi.hssf.record.formula.AbstractFunctionPtg
 
lossless - Variable in class loci.formats.codec.CodecOptions

Used with codecs allowing lossy and lossless compression.

LosslessJPEGCodec - Class in loci.formats.codec

Decompresses lossless JPEG images.

LosslessJPEGCodec() - Constructor for class loci.formats.codec.LosslessJPEGCodec
 
LOW_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
Lower - Class in mdbtools.dbengine.functions
 
Lower() - Constructor for class mdbtools.dbengine.functions.Lower
 
lpoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
 
lqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
 
lqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD
 
lrgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
 
lrxs - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The lower right x coordinates of the applicable ROIs

lrys - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask

The lower right y coordinates of the applicable ROIs

lsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
 
lsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
 
LUMA_BLUE - Static variable in enum loci.formats.tiff.PhotoInterp
 
LUMA_GREEN - Static variable in enum loci.formats.tiff.PhotoInterp
 
LUMA_RED - Static variable in enum loci.formats.tiff.PhotoInterp

Default luminance values for YCbCr data.

LuraWave - Class in loci.plugins.util

Utility methods for dealing with proprietary LuraWave licensing.

LuraWaveCodec - Class in loci.formats.codec

This class provides LuraWave decompression, using LuraWave's Java decoding
 library.

LuraWaveCodec() - Constructor for class loci.formats.codec.LuraWaveCodec
 
LuraWaveService - Interface in loci.formats.services

Source code:
 Trac,
 Gitweb

LuraWaveServiceImpl - Class in loci.formats.services

Source code:
 Trac,
 Gitweb

LuraWaveServiceImpl() - Constructor for class loci.formats.services.LuraWaveServiceImpl

Default constructor.

LUT_LENGTH - Static variable in class loci.formats.in.BioRadReader
 
lutLength - Variable in class loci.formats.ChannelFiller

Number of LUT components.

lvls - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder

The number of levels in the tag tree

lvls - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder

The number of levels in the tag tree

lw - Variable in class jj2000.j2k.util.MsgPrinter

The line width to use

lwfDecoder - Class in com.luratech.lwf

Stub of the Luratech LuraWave® Java decoder class.

lwfDecoder(InputStream, String, String) - Constructor for class com.luratech.lwf.lwfDecoder
 
LY_RES_COMP_POS_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType

The bit stream is Layer/Resolution/Component/Position progressive : 0

lye - Variable in class jj2000.j2k.entropy.Progression

The index of the last layer.

lyepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
 
LZOCodec - Class in loci.formats.codec

This class implements LZO decompression.

LZOCodec() - Constructor for class loci.formats.codec.LZOCodec
 
LZWCodec - Class in loci.formats.codec

This is an optimized LZW codec for use with TIFF files.

LZWCodec() - Constructor for class loci.formats.codec.LZWCodec
 
LZWCompressor - Class in com.sun.media.imageioimpl.common

Modified from original LZWCompressor to change interface to passing a
 buffer of data to be compressed.

LZWCompressor(ImageOutputStream, int, boolean) - Constructor for class com.sun.media.imageioimpl.common.LZWCompressor
 
LZWStringTable - Class in com.sun.media.imageioimpl.common

General purpose LZW String Table.

LZWStringTable() - Constructor for class com.sun.media.imageioimpl.common.LZWStringTable

Constructor allocate memory for string store data





M

m - Variable in class jj2000.j2k.entropy.CodedCBlk

The vertical index of the code-block, within the subband.

m - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The vertical index of the code-block, within the subband

MAC_OS_X - Static variable in class loci.formats.gui.LegacyQTTools
 
MacroFunctions - Class in loci.plugins.macro

Convenience class that simplifies implemention of ImageJ macro extensions.

MacroFunctions() - Constructor for class loci.plugins.macro.MacroFunctions
 
macros - Class in mdbtools.libmdb
 
macros() - Constructor for class mdbtools.libmdb.macros
 
magbits - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The number of magnitude bits in the integer representation.

magbits - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn

The number of magnitude bits

MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants
 
main(String[]) - Static method in class loci.common.ReflectedUniverse

Deprecated.
Allows exploration of a reflected universe in an interactive environment.

main(String[]) - Static method in class loci.formats.AxisGuesser

Method for testing pattern guessing logic.

main(String[]) - Static method in class loci.formats.codec.BitBuffer

Testing method.

main(String[]) - Static method in class loci.formats.codec.BitWriter

Tests the BitWriter class.

main(String[]) - Static method in class loci.formats.FilePattern

Method for testing file pattern logic.

main(String[]) - Static method in class loci.formats.gui.DataConverter
 
main(String[]) - Static method in class loci.formats.gui.ImageViewer
 
main(String[]) - Static method in class loci.formats.gui.XMLWindow
 
main(String[]) - Static method in class loci.formats.in.CellVoyagerReader
 
main(String[]) - Static method in class loci.formats.tools.AmiraParameters
 
main(String[]) - Static method in class loci.formats.tools.BioFormatsExtensionPrinter
 
main(String[]) - Static method in class loci.formats.tools.CacheConsole

Interactive interpreter for testing Bio-Formats caching implementation.

main(String[]) - Static method in class loci.formats.tools.EditTiffG
 
main(String[]) - Static method in class loci.formats.tools.MakeDatasetStructureTable
 
main(String[]) - Static method in class loci.formats.tools.MakeTestOmeTiff
 
main(String[]) - Static method in class loci.formats.tools.PrintDomains
 
main(String[]) - Static method in class loci.formats.tools.PrintFormatTable
 
main(String[]) - Static method in class loci.formats.tools.TiffComment
 
main(String[]) - Static method in class loci.formats.tools.UpgradeCheck
 
main(String[]) - Static method in class loci.formats.tools.XMLIndent
 
main(String[]) - Static method in class loci.formats.tools.XMLValidate
 
main(String[]) - Static method in class loci.plugins.About
 
main(String[]) - Static method in class loci.plugins.config.LociConfig
 
main(String[]) - Static method in class loci.plugins.in.Importer

Main method, for testing.

main(String[]) - Static method in class loci.poi.ddf.EscherDump

A simple test stub.

main(String[]) - Static method in class loci.poi.dev.RecordGenerator

The main program for the RecordGenerator class

main(String[]) - Static method in class loci.poi.hpsf.wellknown.PropertyIDMap

For the most basic testing.

main(String[]) - Static method in class loci.poi.hssf.dev.BiffViewer

Method main with 1 argument just run straight biffview against given
 file

main(String[]) - Static method in class loci.poi.hssf.dev.EFBiffViewer
 
main(String[]) - Static method in class loci.poi.hssf.dev.FormulaViewer

Method main

 pass me a filename and I'll try and parse the formulas from it

main(String[]) - Static method in class loci.poi.hssf.dev.HSSF

Method main

 Given 1 argument takes that as the filename, inputs it and dumps the
 cell values/types out to sys.out

 given 2 arguments where the second argument is the word "write" and the
 first is the filename - writes out a sample (test) spreadsheet (see
 public HSSF(String filename, boolean write)).

main - Variable in class loci.poi.hssf.record.PageBreakRecord.Break
 
main(String[]) - Static method in class loci.poi.hssf.record.RKRecord

Debugging main()

main(String[]) - Static method in class loci.poi.poifs.dev.POIFSViewer

Display the contents of multiple POIFS files

main(String[]) - Static method in class loci.poi.poifs.eventfilesystem.POIFSReader

read in files

main(String[]) - Static method in class loci.poi.poifs.filesystem.POIFSFileSystem

read in a file and write it back out again

main(String[]) - Static method in class loci.poi.util.DrawingDump
 
main(String[]) - Static method in class loci.poi.util.HexDump
 
main(String[]) - Static method in class loci.tests.ImageTester
 
main(String[]) - Static method in class loci.tests.IOTester
 
main(String[]) - Static method in class loci.tests.SingularityTest
 
main(String[]) - Static method in class loci.tests.ZipTester
 
main(String[]) - Static method in class mdbtools.dbengine.Tests
 
main(String[]) - Static method in class mdbtools.examples.mdb_tables
 
main(String[]) - Static method in class mdbtools.libmdb06util.mdbver
 
main(String[]) - Static method in class mdbtools.mdb_export
 
main(String[]) - Static method in class mdbtools.mdb_schema
 
main(String[]) - Static method in class mdbtools.mdb_tables
 
main(String[]) - Static method in class mdbtools.tests.ColumnTest
 
main_tagset - Variable in class loci.formats.in.ZeissTIFFHandler
 
MainDialog - Class in loci.plugins.in

Bio-Formats Importer general options dialog box.

MainDialog(ImportProcess) - Constructor for class loci.plugins.in.MainDialog

Creates a general options dialog for the Bio-Formats Importer.

mainHeadOff - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The offset of the main header in the input stream

MAKE - Static variable in class loci.formats.tiff.IFD
 
make24Bits(Object, int, int, boolean, boolean) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to
 a 3 x (width * height) byte array.

make24Bits(Object, int, int, boolean, boolean, Double, Double) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to
 a 3 x (width * height) byte array.

make24Bits(Object, int, int, boolean) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to
 an int array, i.e.

make24Bits(Object, int, int, boolean, Double, Double) - Static method in class loci.formats.ImageTools

Convert an arbitrary primitive type array with 3 samples per pixel to
 an int array, i.e.

makeBuffered(Image) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image from the given AWT image object.

makeBuffered(Image, ColorModel) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image possessing the given color model,
 from the specified AWT image object.

makeBufferedImageReader(IFormatReader) - Static method in class loci.formats.gui.BufferedImageReader

Converts the given reader into a BufferedImageReader, wrapping if needed.

makeBufferedImageWriter(IFormatWriter) - Static method in class loci.formats.gui.BufferedImageWriter

Converts the given writer into a BufferedImageWriter, wrapping if needed.

makeChannelFiller(IFormatReader) - Static method in class loci.formats.ChannelFiller

Converts the given reader into a ChannelFiller, wrapping if needed.

makeChannelMerger(IFormatReader) - Static method in class loci.formats.ChannelMerger

Converts the given reader into a ChannelMerger, wrapping if needed.

makeChannelSeparator(IFormatReader) - Static method in class loci.formats.ChannelSeparator

Converts the given reader into a ChannelSeparator, wrapping if needed.

makeColorModel(int, int) - Static method in class loci.formats.gui.AWTImageTools

Gets a color model for the given number of color components.

makeColorSpace(int) - Static method in class loci.formats.gui.AWTImageTools

Gets a color space for the given number of color components.

makeCompactGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities

Aligns the first rows * cols
 components of parent in
 a grid.

makeCompatible(BufferedImage, GraphicsConfiguration) - Static method in class loci.formats.gui.AWTImageTools

Creates a buffered image compatible with the given graphics
 configuration, using the given buffered image as a source.

makeDataArray(byte[], int, boolean, boolean) - Static method in class loci.common.DataTools

Convert a byte array to the appropriate 1D primitive type array.

makeDataArray2D(byte[], int, boolean, boolean, int) - Static method in class loci.common.DataTools

Convert a byte array to the appropriate 2D primitive type array.

MakeDatasetStructureTable - Class in loci.formats.tools

Utility class for generating a table containing the dataset structure for
 every supported format.

MakeDatasetStructureTable() - Constructor for class loci.formats.tools.MakeDatasetStructureTable
 
makeDimensionSwapper(IFormatReader) - Static method in class loci.formats.DimensionSwapper

Converts the given reader into a DimensionSwapper, wrapping if needed.

makeDummySlider() - Static method in class loci.plugins.util.DataBrowser
 
makeFilterMetadata() - Method in class loci.formats.FormatReader

Return a properly configured loci.formats.meta.FilterMetadata.

makeGrid(Container, int, int, int, int, int, int) - Static method in class loci.plugins.config.SpringUtilities

Aligns the first rows * cols
 components of parent in
 a grid.

makeHeavyPanel(Component) - Static method in class loci.plugins.util.DataBrowser

Makes AWT play nicely with Swing components.

makeImage(byte[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel byte data.

makeImage(short[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel short data.

makeImage(int[], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel int data.

makeImage(float[], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel float data.

makeImage(double[], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-channel double data.

makeImage(byte[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given byte data.

makeImage(short[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given short data.

makeImage(int[], int, int, int, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given int data.

makeImage(float[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given float data.

makeImage(double[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given double data.

makeImage(byte[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given byte data.

makeImage(short[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given short data.

makeImage(int[][], int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given int data.

makeImage(float[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given single-precision floating point data.

makeImage(double[][], int, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given double-precision floating point data.

makeImage(byte[], boolean, MetadataRetrieve, int) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array, obtaining the
 dimensional parameters from the specified metadata object.

makeImage(byte[], int, int, int, boolean, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array,
 performing any necessary type conversions.

makeImage(byte[][], int, int, int, boolean, boolean, boolean) - Static method in class loci.formats.gui.AWTImageTools

Creates an image from the given raw byte array,
 performing any necessary type conversions.

makeImageProcessorReader(IFormatReader) - Static method in class loci.plugins.util.ImageProcessorReader

Converts the given reader into a ImageProcessorReader, wrapping if needed.

makeImageReader() - Static method in class loci.plugins.util.LociPrefs

Creates an image reader according to the current configuration settings,
 including which format readers are currently enabled, as well as
 format-specific configuration settings.

makeJTree(Document) - Static method in class loci.formats.gui.XMLCellRenderer

Constructs a Swing JTree that displays the given XML DOM document.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator

This function generates the ROI mask for one tile-component.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator

This function generates the ROI mask for the entire tile.

makeMask(Subband, int, int) - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator

This function generates the ROI mask for the entire tile.

makeMinMaxCalculator(IFormatReader) - Static method in class loci.formats.MinMaxCalculator

Converts the given reader into a MinMaxCalculator, wrapping if needed.

makeModuloElement(Document) - Method in class loci.formats.meta.ModuloAnnotation
 
makeOmeTiff(String...) - Method in class loci.formats.tools.MakeTestOmeTiff
 
makeOmeTiff(String, CoreMetadata) - Method in class loci.formats.tools.MakeTestOmeTiff
 
makeOriginalMetadata(Document) - Method in class loci.formats.meta.OriginalMetadataAnnotation
 
MAKER_NOTE - Static variable in class loci.formats.tiff.IFD
 
makeRGBImage(byte[], int, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
 
makeRGBImage(byte[][], int, int) - Static method in class loci.formats.gui.AWTImageTools
 
makerNoteOffset - Variable in class loci.formats.in.NikonReader

Offset to the Nikon Maker Note.

makeSamples() - Method in class loci.formats.tools.MakeTestOmeTiff
 
makeSaneDimensionOrder(String) - Static method in class loci.formats.MetadataTools

Adjusts the given dimension order as needed so that it contains exactly
 one of each of the following characters: 'X', 'Y', 'Z', 'C', 'T'.

makeSigned(byte[]) - Static method in class loci.common.DataTools
 
makeSigned(short[]) - Static method in class loci.common.DataTools
 
makeSigned(int[]) - Static method in class loci.common.DataTools
 
MakeTestOmeTiff - Class in loci.formats.tools

Creates sample OME-TIFF datasets according to the given parameters.

MakeTestOmeTiff() - Constructor for class loci.formats.tools.MakeTestOmeTiff
 
makeTextField() - Static method in class loci.plugins.config.ConfigWindow
 
makeTileStitcher(IFormatReader) - Static method in class loci.formats.TileStitcher

Converts the given reader into a TileStitcher, wrapping if needed.

makeUnsigned(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools

Converts the given BufferedImage into an image with unsigned pixel data.

makeupCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Black and white make-up code table.

makeupCodesBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Make-up codes for black runs.

makeupCodesWhite - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Make-up codes for white runs.

MANUAL - Static variable in class loci.poi.hssf.record.CalcModeRecord

manually calculate formulas (0)

MANUFACTURER - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
 
ManufacturerSpec - Class in ome.xml.model
 
ManufacturerSpec() - Constructor for class ome.xml.model.ManufacturerSpec

Default constructor.

ManufacturerSpec(Element, OMEModel) - Constructor for class ome.xml.model.ManufacturerSpec

Constructs ManufacturerSpec recursively from an XML DOM tree.

ManufacturerSpec(ManufacturerSpec) - Constructor for class ome.xml.model.ManufacturerSpec

Copy constructor.

map - Variable in class loci.formats.tools.AmiraParameters
 
map_base_pg - Variable in class mdbtools.libmdb.MdbTableDef
 
map_sz - Variable in class mdbtools.libmdb.MdbFile
 
map_sz - Variable in class mdbtools.libmdb.MdbTableDef
 
mapFile(String, IRandomAccess) - Static method in class loci.common.Location

Maps the given id to the given IRandomAccess object.

mapFile(String) - Static method in class loci.tests.testng.TestTools

Map the given file into memory.

mapId(String, String) - Static method in class loci.common.Location

Maps the given id to an actual filename on disk.

mapMode - Variable in class loci.common.NIOFileHandle

The default map mode for the file.

mapServer(String, String) - Static method in class loci.formats.in.FlexReader

Map the server named 'alias' to the path 'realName'.

mapServer(String, String[]) - Static method in class loci.formats.in.FlexReader

Map the server named 'alias' to the paths in 'realNames'.

mapServersFromConfigurationFile(String) - Static method in class loci.formats.in.FlexReader

Read a configuration file with lines of the form:

 <server alias>=<real server name>

 and call mapServer(String, String) accordingly.

Margin - Interface in loci.poi.hssf.record

The margin interface is a parent used to define left, right, top and bottom margins.

margins - Variable in class loci.poi.hssf.model.Sheet
 
mark() - Method in class com.sun.media.imageio.stream.RawImageInputStream
 
mark(int) - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
mark(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
 
mark(int) - Method in class loci.common.NIOInputStream
 
mark(int) - Method in class loci.common.RandomAccessInputStream
 
mark - Variable in class loci.common.StreamHandle

Marked position within the stream.

mark(int) - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Marks the current position in this input stream.

mark(int) - Method in class loci.poi.util.BlockingInputStream
 
markedPos - Variable in class loci.common.RandomAccessInputStream
 
Marker - Enum in ome.xml.model.enums
 
MarkerEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Marker.

MarkerEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MarkerEnumHandler
 
Markers - Interface in jj2000.j2k.codestream

This interface defines the values of the different markers in the JPEG 2000
 codestream.

markSupported() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
 
markSupported() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
 
markSupported() - Method in class loci.common.NIOInputStream
 
markSupported() - Method in class loci.common.RandomAccessInputStream
 
markSupported() - Method in class loci.poi.poifs.filesystem.DocumentInputStream

Tests if this input stream supports the mark and reset methods.

markSupported() - Method in class loci.poi.util.BlockingInputStream
 
MarkUnsupportedException - Exception in loci.poi.hpsf

This exception is thrown if an InputStream does
 not support the InputStream.mark(int) operation.

MarkUnsupportedException() - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(String) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

MarkUnsupportedException(String, Throwable) - Constructor for exception loci.poi.hpsf.MarkUnsupportedException

Constructor

Mask - Class in ome.xml.model
 
Mask() - Constructor for class ome.xml.model.Mask

Default constructor.

Mask(Element, OMEModel) - Constructor for class ome.xml.model.Mask

Constructs Mask recursively from an XML DOM tree.

Mask(Mask) - Constructor for class ome.xml.model.Mask

Copy constructor.

maskPGM - Variable in class jj2000.j2k.roi.encoder.ROI

ImgReaderPGM object with the arbrtrary ROI

masterClock - Variable in class loci.formats.in.SDTInfo

Use or not  Master Clock (SPC140 multi-module).

MathUtil - Class in jj2000.j2k.util

This class contains a collection of utility methods fro mathematical
 operations.

MathUtil() - Constructor for class jj2000.j2k.util.MathUtil
 
max(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
Max - Class in mdbtools.dbengine.functions
 
Max() - Constructor for class mdbtools.dbengine.functions.Max
 
MAX_APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD
 
MAX_BUCKETS - Static variable in class loci.poi.hssf.record.ExtSSTRecord
 
MAX_CB_AREA - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The maximum code-block area (width x height).

MAX_CB_DIM - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The maximum code-block dimension.

MAX_COMP_BITDEPTH - Static variable in interface jj2000.j2k.codestream.Markers

The maximum number of component bitdepth

MAX_COMPONENTS - Static variable in class loci.plugins.in.SeriesDialog
 
MAX_DATATYPE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

The numerically largest constant representing a TIFF data type.

MAX_EL_COPYING - Static variable in class jj2000.j2k.util.ArrayUtil

The maximum array size to do element by element copying, larger
 arrays are copyied in a n optimized way.

MAX_HEADER_SIZE - Static variable in class loci.formats.in.QuesantReader
 
MAX_INT - Static variable in class jj2000.j2k.IntegerSpec

The largest value of type int

MAX_LPPM - Static variable in interface jj2000.j2k.codestream.Markers

Maximum length of PPM marker segment

MAX_LPPT - Static variable in interface jj2000.j2k.codestream.Markers

Maximum length of PPT marker segment

MAX_OVERHEAD - Static variable in class loci.common.RandomAccessInputStream

Maximum size of the buffer used by the DataInputStream.

MAX_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
MAX_RECORD_DATA_SIZE - Static variable in class loci.poi.hssf.record.RecordInputStream

Maximum size of a single record (minus the 4 byte header) without a continue

MAX_ROW_NUMBER - Static variable in class loci.poi.hssf.record.RowRecord

The maximum row number that excel can handle (zero bazed) ie 65536 rows is
  max number of rows.

MAX_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD
 
MAX_SEARCH_SIZE - Static variable in class loci.common.NIOInputStream

Maximum number of bytes to search when searching through the stream.

MAX_SEARCH_SIZE - Static variable in class loci.common.RandomAccessInputStream

Maximum number of bytes to search when searching through the stream.

MAX_SERIES_THUMBS - Static variable in class loci.plugins.in.SeriesDialog
 
MAX_SERIES_TOGGLES - Static variable in class loci.plugins.in.SeriesDialog
 
MAX_TRIES - Static variable in class loci.plugins.util.LuraWave
 
maxAdcRate - Variable in class loci.formats.in.SDTInfo
 
maxByte - Variable in class jj2000.j2k.io.BufferedRandomAccessFile

The maximum number of bytes that can be read from the buffer

maxBytes - Variable in class jj2000.j2k.codestream.writer.CodestreamWriter

The maximum number of bytes that can be written to the
 bit stream

maxBytes - Variable in class loci.formats.codec.CodecOptions

If compressing, this is the maximum number of raw bytes to compress.

maxCfdRate - Variable in class loci.formats.in.SDTInfo

(-1.0 - not set).

maxImgRes - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The maximum available image resolution level

maximum - Variable in class loci.common.StatusEvent

Current progress maximum.

MAXLEVEL - Static variable in class com.sun.media.imageioimpl.common.PaletteBuilder

maximum of tree depth

maxNodes - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
 
MaxShiftSpec - Class in jj2000.j2k.roi

This class contains the maxshift scaling value for each tile-component.

MaxShiftSpec(int, int, byte, String) - Constructor for class jj2000.j2k.roi.MaxShiftSpec

Constructs a 'ModuleSpec' object, initializing all the components and
 tiles to the 'SPEC_DEF' spec type, for the specified number of
 components and tiles.

maxSyncRate - Variable in class loci.formats.in.SDTInfo

Maximum rates during the measurement.

maxTacRate - Variable in class loci.formats.in.SDTInfo
 
maxValue() - Method in class loci.plugins.util.RecordedImageProcessor
 
mcsPoints - Variable in class loci.formats.in.SDTInfo

No of MCS values.

mcsTime - Variable in class loci.formats.in.SDTInfo

Interval time [ms] for MCS histogram.

md5(byte[], int, int, int, int, int, int, int) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

md5(byte[], int, int) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

md5(byte[]) - Static method in class loci.tests.testng.TestTools

Calculate the MD5 of a byte array.

mdb - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
mdb_access_types - Static variable in class mdbtools.libmdb.backend
 
mdb_add_sarg(MdbColumn, MdbSarg) - Static method in class mdbtools.libmdb.Sargs
 
mdb_alloc_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem
 
mdb_alloc_file() - Static method in class mdbtools.libmdb.mem
 
mdb_alloc_handle() - Static method in class mdbtools.libmdb.mem
 
mdb_alloc_tabledef(MdbCatalogEntry) - Static method in class mdbtools.libmdb.mem
 
MDB_ANY - Static variable in class mdbtools.libmdb.Constants
 
mdb_backends - Static variable in class mdbtools.libmdb.backend
 
mdb_bind_column(MdbTableDef, int, Holder) - Static method in class mdbtools.libmdb.Data
 
MDB_BIND_SIZE - Static variable in class mdbtools.libmdb.Constants
 
MDB_BOOL - Static variable in class mdbtools.libmdb.Constants
 
MDB_BYTE - Static variable in class mdbtools.libmdb.Constants
 
MDB_CATALOG_PG - Static variable in class mdbtools.libmdb.Constants
 
mdb_col_to_string(MdbHandle, int, int, int) - Static method in class mdbtools.libmdb.Data
 
MDB_DATABASE_PROPERTY - Static variable in class mdbtools.libmdb.Constants
 
MDB_DOUBLE - Static variable in class mdbtools.libmdb.Constants
 
MDB_EQUAL - Static variable in class mdbtools.libmdb.Constants
 
mdb_export - Class in mdbtools
 
mdb_export() - Constructor for class mdbtools.mdb_export
 
mdb_fetch_row(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_find_end_of_row(MdbHandle, int) - Static method in class mdbtools.libmdb.Data
 
MDB_FLOAT - Static variable in class mdbtools.libmdb.Constants
 
MDB_FORM - Static variable in class mdbtools.libmdb.Constants
 
mdb_free_catalog(MdbHandle) - Static method in class mdbtools.libmdb.mem
 
mdb_free_handle(MdbHandle) - Static method in class mdbtools.libmdb.mem
 
mdb_get_byte(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_coltype_string(MdbBackend, int) - Static method in class mdbtools.libmdb.backend
 
mdb_get_double(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_int16(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_int24(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_int32(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
mdb_get_single(MdbHandle, int) - Static method in class mdbtools.libmdb.file
 
MDB_GT - Static variable in class mdbtools.libmdb.Constants
 
MDB_GTEQ - Static variable in class mdbtools.libmdb.Constants
 
mdb_init() - Static method in class mdbtools.libmdb.mem
 
mdb_init_backends() - Static method in class mdbtools.libmdb.backend
 
MDB_INT - Static variable in class mdbtools.libmdb.Constants
 
MDB_ISNULL - Static variable in class mdbtools.libmdb.Constants
 
MDB_LIKE - Static variable in class mdbtools.libmdb.Constants
 
MDB_LINKED_TABLE - Static variable in class mdbtools.libmdb.Constants
 
MDB_LONGINT - Static variable in class mdbtools.libmdb.Constants
 
MDB_LT - Static variable in class mdbtools.libmdb.Constants
 
MDB_LTEQ - Static variable in class mdbtools.libmdb.Constants
 
MDB_MACRO - Static variable in class mdbtools.libmdb.Constants
 
MDB_MAX_COLS - Static variable in class mdbtools.libmdb.Constants
 
MDB_MAX_IDX_COLS - Static variable in class mdbtools.libmdb.Constants
 
MDB_MAX_OBJ_NAME - Static variable in class mdbtools.libmdb.Constants
 
MDB_MEMO - Static variable in class mdbtools.libmdb.Constants
 
MDB_MEMO_OVERHEAD - Static variable in class mdbtools.libmdb.Constants
 
mdb_memo_to_string(MdbHandle, int, int) - Static method in class mdbtools.libmdb.Data
 
MDB_MODULE - Static variable in class mdbtools.libmdb.Constants
 
MDB_MONEY - Static variable in class mdbtools.libmdb.Constants
 
mdb_money_to_string(MdbHandle, int) - Static method in class mdbtools.libmdb.Money
 
MDB_NOTNULL - Static variable in class mdbtools.libmdb.Constants
 
MDB_NUMERIC - Static variable in class mdbtools.libmdb.Constants
 
MDB_OLE - Static variable in class mdbtools.libmdb.Constants
 
mdb_open(RandomAccess) - Static method in class mdbtools.libmdb.file
 
mdb_oracle_types - Static variable in class mdbtools.libmdb.backend
 
MDB_PGSIZE - Static variable in class mdbtools.libmdb.Constants
 
MDB_PGSIZE - Static variable in class mdbtools.libmdb.MdbHandle
 
mdb_postgres_types - Static variable in class mdbtools.libmdb.backend
 
MDB_QUERY - Static variable in class mdbtools.libmdb.Constants
 
mdb_read_alt_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file
 
mdb_read_catalog(MdbHandle, int) - Static method in class mdbtools.libmdb.Catalog
 
mdb_read_columns(MdbTableDef) - Static method in class mdbtools.libmdb.Table
 
mdb_read_next_dpg(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_read_next_dpg_by_map0(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_read_next_dpg_by_map1(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_read_pg(MdbHandle, long) - Static method in class mdbtools.libmdb.file

mdb_read a wrapper for read that bails if anything is wrong

mdb_read_row(MdbTableDef, int) - Static method in class mdbtools.libmdb.Data
 
mdb_read_table(MdbCatalogEntry) - Static method in class mdbtools.libmdb.Table
 
MDB_RELATIONSHIP - Static variable in class mdbtools.libmdb.Constants
 
MDB_REPID - Static variable in class mdbtools.libmdb.Constants
 
MDB_REPORT - Static variable in class mdbtools.libmdb.Constants
 
mdb_rewind_table(MdbTableDef) - Static method in class mdbtools.libmdb.Data
 
mdb_schema - Class in mdbtools
 
mdb_schema() - Constructor for class mdbtools.mdb_schema
 
MDB_SDATETIME - Static variable in class mdbtools.libmdb.Constants
 
mdb_set_default_backend(MdbHandle, String) - Static method in class mdbtools.libmdb.backend
 
MDB_SUFFIX - Static variable in class loci.formats.in.ZeissLSMReader
 
mdb_swap_pgbuf(MdbHandle) - Static method in class mdbtools.libmdb.file
 
mdb_sybase_types - Static variable in class mdbtools.libmdb.backend
 
MDB_SYSTEM_TABLE - Static variable in class mdbtools.libmdb.Constants
 
MDB_TABLE - Static variable in class mdbtools.libmdb.Constants
 
mdb_tables - Class in mdbtools.examples
 
mdb_tables() - Constructor for class mdbtools.examples.mdb_tables
 
mdb_tables - Class in mdbtools
 
mdb_tables() - Constructor for class mdbtools.mdb_tables
 
mdb_test_int(MdbSarg, int) - Static method in class mdbtools.libmdb.Sargs
 
mdb_test_sarg(MdbHandle, MdbColumn, MdbSarg, int, int) - Static method in class mdbtools.libmdb.Sargs
 
mdb_test_sargs(MdbHandle, MdbColumn, int, int) - Static method in class mdbtools.libmdb.Sargs
 
MDB_TEXT - Static variable in class mdbtools.libmdb.Constants
 
MDB_UNKNOWN_09 - Static variable in class mdbtools.libmdb.Constants
 
MDB_UNKNOWN_0A - Static variable in class mdbtools.libmdb.Constants
 
mdb_xfer_bound_bool(MdbHandle, MdbColumn, boolean) - Static method in class mdbtools.libmdb.Data
 
mdb_xfer_bound_data(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data
 
mdb_xfer_bound_ole(MdbHandle, int, MdbColumn, int) - Static method in class mdbtools.libmdb.Data
 
MdbAny - Class in mdbtools.libmdb
 
MdbAny() - Constructor for class mdbtools.libmdb.MdbAny
 
MdbBackend - Class in mdbtools.libmdb
 
MdbBackend() - Constructor for class mdbtools.libmdb.MdbBackend
 
MdbCatalogEntry - Class in mdbtools.libmdb
 
MdbCatalogEntry() - Constructor for class mdbtools.libmdb.MdbCatalogEntry
 
MdbColumn - Class in mdbtools.libmdb
 
MdbColumn() - Constructor for class mdbtools.libmdb.MdbColumn
 
MdbFile - Class in mdbtools.libmdb
 
MdbFile() - Constructor for class mdbtools.libmdb.MdbFile
 
MdbFormatConstants - Class in mdbtools.libmdb
 
MdbFormatConstants() - Constructor for class mdbtools.libmdb.MdbFormatConstants
 
MdbHandle - Class in mdbtools.libmdb
 
MdbHandle() - Constructor for class mdbtools.libmdb.MdbHandle
 
MdbJet3Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants
 
MdbJet4Constants - Static variable in class mdbtools.libmdb.MdbFormatConstants
 
MdbSarg - Class in mdbtools.libmdb
 
MdbSarg() - Constructor for class mdbtools.libmdb.MdbSarg
 
MDBService - Interface in loci.formats.services

Interface defining methods for parsing MDB database files.

MDBServiceImpl - Class in loci.formats.services

Implementation of MDBService for parsing MDB database files.

MDBServiceImpl() - Constructor for class loci.formats.services.MDBServiceImpl

Default constructor.

MdbStatistics - Class in mdbtools.libmdb
 
MdbStatistics() - Constructor for class mdbtools.libmdb.MdbStatistics
 
MdbTableDef - Class in mdbtools.libmdb
 
MdbTableDef() - Constructor for class mdbtools.libmdb.MdbTableDef
 
mdbtools - package mdbtools
 
mdbtools.dbengine - package mdbtools.dbengine
 
mdbtools.dbengine.functions - package mdbtools.dbengine.functions
 
mdbtools.dbengine.sql - package mdbtools.dbengine.sql
 
mdbtools.dbengine.tasks - package mdbtools.dbengine.tasks
 
mdbtools.examples - package mdbtools.examples
 
mdbtools.jdbc2 - package mdbtools.jdbc2
 
mdbtools.libmdb - package mdbtools.libmdb
 
mdbtools.libmdb06util - package mdbtools.libmdb06util
 
mdbtools.publicapi - package mdbtools.publicapi
 
mdbtools.tests - package mdbtools.tests
 
mdbver - Class in mdbtools.libmdb06util
 
mdbver() - Constructor for class mdbtools.libmdb06util.mdbver
 
mdl - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The maximum number of decompostion levels for each component of the
 current tile.

MEA_SUFFIX - Static variable in class loci.formats.in.FlexReader
 
measDescBlockLength - Variable in class loci.formats.in.SDTInfo
 
measDescBlockNo - Variable in class loci.formats.in.SDTInfo

Number of the measurement description block
 corresponding to this data block.

measDescBlockOffs - Variable in class loci.formats.in.SDTInfo
 
measMode - Variable in class loci.formats.in.SDTInfo
 
MEASURE_MODE_2D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSMeasureMode" tag.

MEASURE_MODE_3D - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet

A value to be used with the "GPSMeasureMode" tag.

MEASUREMENT_SUFFIXES - Static variable in class loci.formats.in.FlexReader
 
medianFilter() - Method in class loci.plugins.util.RecordedImageProcessor
 
MEDICAL_DOMAIN - Static variable in class loci.formats.FormatTools

Identifies the medical imaging domain.

MEDIUM - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
Medium - Enum in ome.xml.model.enums
 
MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
MEDIUM_DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
MEDIUM_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader
 
MediumEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for Medium.

MediumEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MediumEnumHandler
 
mem - Class in mdbtools.libmdb
 
mem() - Constructor for class mdbtools.libmdb.mem
 
MemAreaPtg - Class in loci.poi.hssf.record.formula
 
MemAreaPtg() - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg

Creates new MemAreaPtg

MemAreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemAreaPtg
 
memBank - Variable in class loci.formats.in.SDTInfo
 
MemErrPtg - Class in loci.poi.hssf.record.formula
 
MemErrPtg() - Constructor for class loci.poi.hssf.record.formula.MemErrPtg

Creates new MemErrPtg

MemErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemErrPtg
 
MemFuncPtg - Class in loci.poi.hssf.record.formula
 
MemFuncPtg() - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg
 
MemFuncPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MemFuncPtg

Creates new function pointer from a byte array
 usually called while reading an excel file.

Memoizer - Class in loci.formats

ReaderWrapper implementation which caches the state of the
 delegate (including and other ReaderWrapper instances)
 after setId has been called.

Memoizer() - Constructor for class loci.formats.Memoizer

Constructs a memoizer around a new image reader.

Memoizer(long) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around a new image reader.

Memoizer(long, File) - Constructor for class loci.formats.Memoizer
 
Memoizer(IFormatReader) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around the given reader.

Memoizer(IFormatReader, long) - Constructor for class loci.formats.Memoizer

Constructs a memoizer around the given reader.

Memoizer(IFormatReader, long, File) - Constructor for class loci.formats.Memoizer
 
Memoizer.Deser - Interface in loci.formats
 
Memoizer.KryoDeser - Class in loci.formats
 
Memoizer.KryoDeser() - Constructor for class loci.formats.Memoizer.KryoDeser
 
MemoryData - Class in mdbtools.dbengine

An implementation of Data that stores the complete result in memory

MemoryData() - Constructor for class mdbtools.dbengine.MemoryData
 
MemoryData(Data, int) - Constructor for class mdbtools.dbengine.MemoryData
 
MemoryDialog - Class in loci.plugins.in

Bio-Formats Importer memory usage confirmation dialog box.

MemoryDialog(ImportProcess) - Constructor for class loci.plugins.in.MemoryDialog

Creates a memory confirmation dialog for the Bio-Formats Importer.

MemoryRandomAccess - Class in mdbtools.examples
 
MemoryRandomAccess(byte[]) - Constructor for class mdbtools.examples.MemoryRandomAccess
 
merge(Map<String, Object>, Map<String, Object>, String) - Static method in class loci.formats.MetadataTools

Merges the given lists of metadata, prepending the
 specified prefix for the destination keys.

MergeCellsRecord - Class in loci.poi.hssf.record

Title: Merged Cells Record
 

 Description:  Optional record defining a square area of cells to "merged" into
               one cell.

MergeCellsRecord() - Constructor for class loci.poi.hssf.record.MergeCellsRecord
 
MergeCellsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MergeCellsRecord

Constructs a MergedCellsRecord and sets its fields appropriately

MergeCellsRecord.MergedRegion - Class in loci.poi.hssf.record

this is a low level representation of a MergedRegion of cells.

MergeCellsRecord.MergedRegion(int, int, short, short) - Constructor for class loci.poi.hssf.record.MergeCellsRecord.MergedRegion

create a merged region all in one stroke.

mergeChannels(BufferedImage[]) - Static method in class loci.formats.gui.AWTImageTools

Merges the given images into a single multi-channel image.

merged - Variable in class loci.poi.hssf.model.Sheet
 
mergedRecords - Variable in class loci.poi.hssf.model.Sheet
 
mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
mergeNativeTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
 
mergeStandardTree(Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
 
mergeTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
meta - Variable in class loci.plugins.in.ImportProcess
 
metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor

The IIOMetadata object containing metadata for the
 current image.

metadata - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor

The IIOMetadata object containing metadata for the
 current image.

metadata - Variable in class loci.formats.FormatReader

Hashtable containing metadata key/value pairs.

metadata - Variable in class loci.plugins.util.DataBrowser
 
metadataComplete - Variable in class loci.formats.CoreMetadata

Indicates whether or not we are confident that all of the metadata stored
 within the file has been parsed.

MetadataConverter - Class in loci.formats.meta

A utility class containing a method for piping a source
 MetadataRetrieve object into a destination MetadataStore.

MetadataLevel - Enum in loci.formats.in

Source code:
 Trac,
 Gitweb

MetadataOnly - Class in ome.xml.model
 
MetadataOnly() - Constructor for class ome.xml.model.MetadataOnly

Default constructor.

MetadataOnly(Element, OMEModel) - Constructor for class ome.xml.model.MetadataOnly

Constructs MetadataOnly recursively from an XML DOM tree.

MetadataOnly(MetadataOnly) - Constructor for class ome.xml.model.MetadataOnly

Copy constructor.

metadataOptions - Variable in class loci.formats.FormatReader

Metadata parsing options.

MetadataOptions - Interface in loci.formats.in

Source code:
 Trac,
 Gitweb

metadataRetrieve - Variable in class loci.formats.FormatWriter

Current metadata retrieval object.

MetadataRetrieve - Interface in loci.formats.meta

Source code:
 Trac,
 Gitweb

MetadataRetrieve - Interface in ome.xml.meta

A proxy whose responsibility it is to extract biological image data from a
 particular storage medium.

MetadataRoot - Interface in ome.xml.meta

Abstract metadata root node.

metadataStore - Variable in class loci.formats.FormatReader

Current metadata store.

MetadataStore - Interface in loci.formats.meta

Source code:
 Trac,
 Gitweb

MetadataStore - Interface in ome.xml.meta

A proxy whose responsibility it is to marshal biological image data into a
 particular storage medium.

MetadataTools - Class in loci.formats

A utility class for working with metadata objects,
 including MetadataStore, MetadataRetrieve,
 and OME-XML strings.

MetakitException - Exception in ome.metakit

MetakitException is the exception thrown when something
 goes wrong when reading a Metakit database file.

MetakitException() - Constructor for exception ome.metakit.MetakitException
 
MetakitException(String) - Constructor for exception ome.metakit.MetakitException
 
MetakitException(String, Throwable) - Constructor for exception ome.metakit.MetakitException
 
MetakitException(Throwable) - Constructor for exception ome.metakit.MetakitException
 
MetakitReader - Class in ome.metakit

Top-level reader for Metakit database files.

MetakitReader(String) - Constructor for class ome.metakit.MetakitReader
 
MetakitReader(RandomAccessInputStream) - Constructor for class ome.metakit.MetakitReader
 
MetakitService - Interface in loci.formats.services

Interface defining methods for interacting with the OME Metakit library.

MetakitServiceImpl - Class in loci.formats.services

Implementation of MetakitService for interacting with the
 OME Metakit library.

MetakitServiceImpl() - Constructor for class loci.formats.services.MetakitServiceImpl
 
MetakitTools - Class in ome.metakit

Utility methods for working with Metakit database files.

MetakitTools() - Constructor for class ome.metakit.MetakitTools
 
MetamorphHandler - Class in loci.formats.in

MetamorphTiffReader is the file format reader for TIFF files produced by
 Metamorph software version 7.5 and above.

MetamorphHandler() - Constructor for class loci.formats.in.MetamorphHandler
 
MetamorphHandler(Hashtable) - Constructor for class loci.formats.in.MetamorphHandler
 
MetamorphReader - Class in loci.formats.in

Reader is the file format reader for Metamorph STK files.

MetamorphReader() - Constructor for class loci.formats.in.MetamorphReader

Constructs a new Metamorph reader.

MetamorphTiffReader - Class in loci.formats.in

MetamorphTiffReader is the file format reader for TIFF files produced by
 Metamorph software version 7.5 and above.

MetamorphTiffReader() - Constructor for class loci.formats.in.MetamorphTiffReader

Constructs a new Metamorph TIFF reader.

metaWindow - Variable in class loci.plugins.util.DataBrowser
 
METERING_MODE - Static variable in class loci.formats.tiff.IFD
 
METERING_MODE_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_CENTER_WEIGHTED_AVERAGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MAX_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MIN_RESERVED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_MULTI_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_OTHER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_PARTIAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_PATTERN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_SPOT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

METERING_MODE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet

A value to be used with the "MeteringMode" tag.

MIASReader - Class in loci.formats.in

MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.

MIASReader() - Constructor for class loci.formats.in.MIASReader

Constructs a new MIAS reader.

MicrobeamManipulation - Class in ome.xml.model
 
MicrobeamManipulation() - Constructor for class ome.xml.model.MicrobeamManipulation

Default constructor.

MicrobeamManipulation(Element, OMEModel) - Constructor for class ome.xml.model.MicrobeamManipulation

Constructs MicrobeamManipulation recursively from an XML DOM tree.

MicrobeamManipulation(MicrobeamManipulation) - Constructor for class ome.xml.model.MicrobeamManipulation

Copy constructor.

MicrobeamManipulationRef - Class in ome.xml.model
 
MicrobeamManipulationRef() - Constructor for class ome.xml.model.MicrobeamManipulationRef

Default constructor.

MicrobeamManipulationRef(Element, OMEModel) - Constructor for class ome.xml.model.MicrobeamManipulationRef

Constructs MicrobeamManipulationRef recursively from an XML DOM tree.

MicrobeamManipulationRef(MicrobeamManipulationRef) - Constructor for class ome.xml.model.MicrobeamManipulationRef

Copy constructor.

MicrobeamManipulationType - Enum in ome.xml.model.enums
 
MicrobeamManipulationTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for MicrobeamManipulationType.

MicrobeamManipulationTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MicrobeamManipulationTypeEnumHandler
 
MicromanagerReader - Class in loci.formats.in

MicromanagerReader is the file format reader for Micro-Manager files.

MicromanagerReader() - Constructor for class loci.formats.in.MicromanagerReader

Constructs a new Micromanager reader.

Microscope - Class in ome.xml.model
 
Microscope() - Constructor for class ome.xml.model.Microscope

Default constructor.

Microscope(Element, OMEModel) - Constructor for class ome.xml.model.Microscope

Constructs Microscope recursively from an XML DOM tree.

Microscope(Microscope) - Constructor for class ome.xml.model.Microscope

Copy constructor.

MicroscopeType - Enum in ome.xml.model.enums
 
MicroscopeTypeEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for MicroscopeType.

MicroscopeTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.MicroscopeTypeEnumHandler
 
MICROSOFT - Static variable in class loci.common.DateTools
 
MICROSOFT_EPOCH - Static variable in class loci.common.DateTools
 
min(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
Min - Class in mdbtools.dbengine.functions
 
Min() - Constructor for class mdbtools.dbengine.functions.Min
 
MIN_BROWSER_WIDTH - Static variable in class loci.plugins.util.DataBrowser
 
MIN_CB_DIM - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The minimum code-block dimension.

MIN_DATATYPE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag

The numerically smallest constant representing a TIFF data type.

MIN_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
MIN_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD
 
minAdcRate - Variable in class loci.formats.in.SDTInfo
 
minCfdRate - Variable in class loci.formats.in.SDTInfo

(-1.0 - not set).

MINCReader - Class in loci.formats.in

MINCReader is the file format reader for MINC MRI files.

MINCReader() - Constructor for class loci.formats.in.MINCReader

Constructs a new MINC reader.

MinimalTiffReader - Class in loci.formats.in

MinimalTiffReader is the superclass for file format readers compatible with
 or derived from the TIFF 6.0 file format.

MinimalTiffReader() - Constructor for class loci.formats.in.MinimalTiffReader

Constructs a new MinimalTiffReader.

MinimalTiffReader(String, String) - Constructor for class loci.formats.in.MinimalTiffReader

Constructs a new MinimalTiffReader.

MinimalTiffReader(String, String[]) - Constructor for class loci.formats.in.MinimalTiffReader

Constructs a new MinimalTiffReader.

MINIMUM_JAVA_VERSION - Static variable in class loci.common.NIOByteBufferProvider

The minimum Java version we know is safe for memory mapped I/O.

MinMaxCalculator - Class in loci.formats

Logic to compute minimum and maximum values for each channel.

MinMaxCalculator() - Constructor for class loci.formats.MinMaxCalculator

Constructs a MinMaxCalculator around a new image reader.

MinMaxCalculator(IFormatReader) - Constructor for class loci.formats.MinMaxCalculator

Constructs a MinMaxCalculator with the given reader.

minMaxDone - Variable in class loci.formats.MinMaxCalculator

Number of planes for which min/max computations have been completed.

minMaxStore - Variable in class loci.formats.MinMaxCalculator

Consumer of channel global minima and maxima

minSyncRate - Variable in class loci.formats.in.SDTInfo

Minimum rates during the measurement.

minTacRate - Variable in class loci.formats.in.SDTInfo
 
minValue() - Method in class loci.plugins.util.RecordedImageProcessor
 
minX - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The X coordinate of the image's upper-left pixel.

minY - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage

The Y coordinate of the image's upper-left pixel.

MISSING_VERSION_CODE - Static variable in class loci.plugins.config.LibraryEntry

Version code to indicate a missing library.

MissingArgPtg - Class in loci.poi.hssf.record.formula

Missing Function Arguments

 Avik Sengupta <avik at apache.org>

MissingArgPtg() - Constructor for class loci.poi.hssf.record.formula.MissingArgPtg
 
MissingArgPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MissingArgPtg
 
MissingLibraryException - Exception in loci.formats

MissingLibraryException is the exception thrown when a particular data
 stream or filename requires a library that is not present on the system.

MissingLibraryException() - Constructor for exception loci.formats.MissingLibraryException
 
MissingLibraryException(String) - Constructor for exception loci.formats.MissingLibraryException
 
MissingLibraryException(String, Throwable) - Constructor for exception loci.formats.MissingLibraryException
 
MissingLibraryException(Throwable) - Constructor for exception loci.formats.MissingLibraryException
 
MissingSectionException - Exception in loci.poi.hpsf

This exception is thrown if one of the PropertySet's
 convenience methods does not find a required Section.

MissingSectionException() - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MissingSectionException(String) - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MissingSectionException(Throwable) - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MissingSectionException(String, Throwable) - Constructor for exception loci.poi.hpsf.MissingSectionException

Constructor

MJPBCodec - Class in loci.formats.codec

Methods for compressing and decompressing QuickTime Motion JPEG-B data.

MJPBCodec() - Constructor for class loci.formats.codec.MJPBCodec
 
MJPBCodecOptions - Class in loci.formats.codec

Options for compressing and decompressing MJPB data.

MJPBCodecOptions() - Constructor for class loci.formats.codec.MJPBCodecOptions
 
mkdirs() - Method in class loci.common.Location

Creates a directory structures described by this Location's internal
 File instance.

MMSRecord - Class in loci.poi.hssf.record

Title: MMS Record

MMSRecord() - Constructor for class loci.poi.hssf.record.MMSRecord
 
MMSRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MMSRecord

Constructs a MMS record and sets its fields appropriately.

MNG_MAGIC_BYTES - Static variable in class loci.formats.in.MNGReader
 
MNGReader - Class in loci.formats.in

MNGReader is the file format reader for Multiple Network Graphics (MNG)
 files.

MNGReader() - Constructor for class loci.formats.in.MNGReader

Constructs a new MNG reader.

mod - Variable in class loci.formats.in.SDTInfo

Module number.

MODEL - Static variable in class loci.formats.tiff.IFD
 
Model - Interface in loci.poi.hssf.model

enclosing_type describe the purpose here

ModelFactory - Class in loci.poi.hssf.eventmodel

ModelFactory creates workbook and sheet models based upon 
 events thrown by them there events from the EventRecordFactory.

ModelFactory() - Constructor for class loci.poi.hssf.eventmodel.ModelFactory

Constructor for ModelFactory.

ModelFactoryListener - Interface in loci.poi.hssf.eventmodel

ModelFactoryListener is registered with the 
 ModelFactory.

modFpgaVer - Variable in class loci.formats.in.SDTInfo

New in v.8.4.

modSerNo - Variable in class loci.formats.in.SDTInfo

Serial number of the module.

modType - Variable in class loci.formats.in.SDTInfo

Module type.

modTypeCode - Variable in class loci.formats.in.SDTInfo
 
ModuleSpec - Class in jj2000.j2k

This generic class is used to handle values to be used by a module for each
 tile and component.

ModuleSpec(int, int, byte) - Constructor for class jj2000.j2k.ModuleSpec

Constructs a 'ModuleSpec' object, initializing all the components and
 tiles to the 'SPEC_DEF' spec val type, for the specified number of
 components and tiles.

Modulo - Class in loci.formats

Represents a subdimension of Z, C, or T as needed for supporting Modulo
 annotations.

Modulo(String) - Constructor for class loci.formats.Modulo
 
MODULO_NS - Static variable in class loci.formats.meta.ModuloAnnotation
 
ModuloAnnotation - Class in loci.formats.meta
 
ModuloAnnotation() - Constructor for class loci.formats.meta.ModuloAnnotation
 
moduloC - Variable in class loci.formats.CoreMetadata
 
moduloT - Variable in class loci.formats.CoreMetadata
 
moduloZ - Variable in class loci.formats.CoreMetadata
 
MolecularImagingReader - Class in loci.formats.in

MolecularImagingReader is the file format reader for Molecular Imaging files.

MolecularImagingReader() - Constructor for class loci.formats.in.MolecularImagingReader

Constructs a new Molecular Imaging reader.

Money - Class in mdbtools.libmdb
 
Money() - Constructor for class mdbtools.libmdb.Money
 
mouseClicked(MouseEvent) - Method in class loci.plugins.in.MainDialog
 
mouseDragged(MouseEvent) - Method in class loci.formats.gui.ImageViewer

Handles cursor probes.

mouseEntered(MouseEvent) - Method in class loci.plugins.in.MainDialog

Focuses the component upon mouseover.

mouseExited(MouseEvent) - Method in class loci.plugins.in.MainDialog
 
mouseMoved(MouseEvent) - Method in class loci.formats.gui.ImageViewer

Handles cursor probes.

mousePressed(MouseEvent) - Method in class loci.plugins.in.MainDialog
 
mouseReleased(MouseEvent) - Method in class loci.plugins.in.MainDialog
 
mouseWheelMoved(MouseWheelEvent) - Method in class loci.plugins.util.DataBrowser
 
moveTo(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
 
MQCoder - Class in jj2000.j2k.entropy.encoder

This class implements the MQ arithmetic coder.

MQCoder(ByteOutputBuffer, int, int[]) - Constructor for class jj2000.j2k.entropy.encoder.MQCoder

Instantiates a new MQ-coder, with the specified number of contexts and
 initial states.

MQDecoder - Class in jj2000.j2k.entropy.decoder

This class implements the MQ arithmetic decoder.

MQDecoder(ByteInputBuffer, int, int[]) - Constructor for class jj2000.j2k.entropy.decoder.MQDecoder

Instantiates a new MQ-decoder, with the specified number of contexts and
 initial states.

mqrs - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder

MQ reset specifications

MRCReader - Class in loci.formats.in

MRCReader is the file format reader for MRC files.

MRCReader() - Constructor for class loci.formats.in.MRCReader

Constructs a new MRC reader.

mReserved1 - Variable in class loci.formats.in.SDTInfo
 
mReserved2 - Variable in class loci.formats.in.SDTInfo
 
mressrc - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

The 'MultiResImgData' source

mressrc - Variable in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

The MultiResImgData source

MRW_MAGIC_STRING - Static variable in class loci.formats.in.MRWReader
 
MRWReader - Class in loci.formats.in

MRWReader is the file format reader for Minolta MRW files.

MRWReader() - Constructor for class loci.formats.in.MRWReader

Constructs a new MRW reader.

msbSkipped - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The number of most significant bits which are skipped for this
 code-block (= Mb-1-bitDepth).

MsgLogger - Interface in jj2000.j2k.util

This class provides a simple common abstraction of a facility that logs
 and/or displays messages or simple strings.

MsgPrinter - Class in jj2000.j2k.util

This utility class formats messages to the specified line width, by
 inserting line-breaks between words, and printing the resulting
 lines.

MsgPrinter(int) - Constructor for class jj2000.j2k.util.MsgPrinter

Creates a new message printer with the specified line width and
 with the default locale.

MSOBI_DIB - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
MSOBI_EMF - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
MSOBI_JPEG - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
MSOBI_PICT - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
MSOBI_PNG - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
MSOBI_WMF - Static variable in class loci.poi.hssf.usermodel.HSSFPictureData
 
MSRLECodec - Class in loci.formats.codec

Methods for compressing and decompressing data using Microsoft RLE.

MSRLECodec() - Constructor for class loci.formats.codec.MSRLECodec
 
MSVideoCodec - Class in loci.formats.codec

Methods for compressing and decompressing data using Microsoft Video 1.

MSVideoCodec() - Constructor for class loci.formats.codec.MSVideoCodec
 
mtResol - Variable in class loci.formats.in.SDTInfo

Macro time clock in 0.1 ns units.

MulBlankRecord - Class in loci.poi.hssf.record

Title:        Mulitple Blank cell record

MulBlankRecord() - Constructor for class loci.poi.hssf.record.MulBlankRecord

Creates new MulBlankRecord

MulBlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MulBlankRecord

Constructs a MulBlank record and sets its fields appropriately.

MulRKRecord - Class in loci.poi.hssf.record

Used to store multiple RK numbers on a row.

MulRKRecord() - Constructor for class loci.poi.hssf.record.MulRKRecord

Creates new MulRKRecord

MulRKRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.MulRKRecord

Constructs a MulRK record and sets its fields appropriately.

multiply(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
MultiplyPtg - Class in loci.poi.hssf.record.formula

Implements the standard mathmatical multiplication - *

MultiplyPtg() - Constructor for class loci.poi.hssf.record.formula.MultiplyPtg

Creates new AddPtg

MultiplyPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.MultiplyPtg
 
MultiResImgData - Interface in jj2000.j2k.wavelet.synthesis

This interface defines methods to access image attributes (width, height,
 number of components, etc.) of multiresolution images, such as those
 resulting from an inverse wavelet transform.

MultiResImgDataAdapter - Class in jj2000.j2k.wavelet.synthesis

This class provides a default implementation for the methods of the
 'MultiResImgData' interface.

MultiResImgDataAdapter(MultiResImgData) - Constructor for class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Instantiates the MultiResImgDataAdapter object specifying the
 MultiResImgData source.

MUST_GROUP - Static variable in class loci.formats.FormatTools

File grouping options.

MUST_GROUP - Static variable in interface loci.formats.IFormatReader

File grouping options.

MutableProperty - Class in loci.poi.hpsf

Adds writing capability to the Property class.

MutableProperty() - Constructor for class loci.poi.hpsf.MutableProperty

Creates an empty property.

MutableProperty(Property) - Constructor for class loci.poi.hpsf.MutableProperty

Creates a MutableProperty as a copy of an existing
 Property.

MutablePropertySet - Class in loci.poi.hpsf

Adds writing support to the PropertySet class.

MutablePropertySet() - Constructor for class loci.poi.hpsf.MutablePropertySet

Constructs a MutablePropertySet instance.

MutablePropertySet(PropertySet) - Constructor for class loci.poi.hpsf.MutablePropertySet

Constructs a MutablePropertySet by doing a deep copy of
 an existing PropertySet.

MutableSection - Class in loci.poi.hpsf

Adds writing capability to the Section class.

MutableSection() - Constructor for class loci.poi.hpsf.MutableSection

Creates an empty mutable section.

MutableSection(Section) - Constructor for class loci.poi.hpsf.MutableSection

Constructs a MutableSection by doing a deep copy of an 
 existing Section.

myReader - Variable in class loci.formats.gui.ImageViewer

Current format reader.

myWriter - Variable in class loci.formats.gui.ImageViewer

Current format writer.





N

n - Variable in class jj2000.j2k.entropy.CodedCBlk

The horizontal index of the code-block, within the subband.

n - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

The horizontal index of the code-block, within the subband

NAFReader - Class in loci.formats.in

NAFReader is the file format reader for Hamamatsu Aquacosmos NAF files.

NAFReader() - Constructor for class loci.formats.in.NAFReader

Constructs a new NAF reader.

name - Variable in class loci.plugins.config.LibraryEntry
 
name - Variable in class mdbtools.libmdb.MdbColumn
 
name - Variable in class mdbtools.libmdb.MdbTableDef
 
NamePtg - Class in loci.poi.hssf.record.formula
 
NamePtg(String, Workbook) - Constructor for class loci.poi.hssf.record.formula.NamePtg

Creates new NamePtg

NamePtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NamePtg

Creates new NamePtg

NameRecord - Class in loci.poi.hssf.record

Title:        Name Record (aka Named Range)

NameRecord() - Constructor for class loci.poi.hssf.record.NameRecord

Creates new NameRecord

NameRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NameRecord

Constructs a Name record and sets its fields appropriately.

NameRecord(byte, short) - Constructor for class loci.poi.hssf.record.NameRecord

Constructor to create a built-in named region

names - Static variable in class loci.plugins.shortcut.ShortcutPanel

Details for installed plugins.

names - Variable in class loci.poi.hssf.model.Workbook
 
NAMESPACE - Static variable in class ome.xml.model.AffineTransform
 
NAMESPACE - Static variable in class ome.xml.model.Annotation
 
NAMESPACE - Static variable in class ome.xml.model.AnnotationRef
 
NAMESPACE - Static variable in class ome.xml.model.Arc
 
NAMESPACE - Static variable in class ome.xml.model.BasicAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.BinaryFile
 
NAMESPACE - Static variable in class ome.xml.model.BinaryOnly
 
NAMESPACE - Static variable in class ome.xml.model.BinData
 
NAMESPACE - Static variable in class ome.xml.model.BooleanAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.Channel
 
NAMESPACE - Static variable in class ome.xml.model.ChannelRef
 
NAMESPACE - Static variable in class ome.xml.model.CommentAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.Dataset
 
NAMESPACE - Static variable in class ome.xml.model.DatasetRef
 
NAMESPACE - Static variable in class ome.xml.model.Detector
 
NAMESPACE - Static variable in class ome.xml.model.DetectorSettings
 
NAMESPACE - Static variable in class ome.xml.model.Dichroic
 
NAMESPACE - Static variable in class ome.xml.model.DichroicRef
 
NAMESPACE - Static variable in class ome.xml.model.DoubleAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.Ellipse
 
NAMESPACE - Static variable in class ome.xml.model.EmissionFilterRef
 
NAMESPACE - Static variable in class ome.xml.model.ExcitationFilterRef
 
NAMESPACE - Static variable in class ome.xml.model.Experiment
 
NAMESPACE - Static variable in class ome.xml.model.Experimenter
 
NAMESPACE - Static variable in class ome.xml.model.ExperimenterGroup
 
NAMESPACE - Static variable in class ome.xml.model.ExperimenterGroupRef
 
NAMESPACE - Static variable in class ome.xml.model.ExperimenterRef
 
NAMESPACE - Static variable in class ome.xml.model.ExperimentRef
 
NAMESPACE - Static variable in class ome.xml.model.External
 
NAMESPACE - Static variable in class ome.xml.model.Filament
 
NAMESPACE - Static variable in class ome.xml.model.FileAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.Filter
 
NAMESPACE - Static variable in class ome.xml.model.FilterRef
 
NAMESPACE - Static variable in class ome.xml.model.FilterSet
 
NAMESPACE - Static variable in class ome.xml.model.FilterSetRef
 
NAMESPACE - Static variable in class ome.xml.model.Image
 
NAMESPACE - Static variable in class ome.xml.model.ImageRef
 
NAMESPACE - Static variable in class ome.xml.model.ImagingEnvironment
 
NAMESPACE - Static variable in class ome.xml.model.Instrument
 
NAMESPACE - Static variable in class ome.xml.model.InstrumentRef
 
NAMESPACE - Static variable in class ome.xml.model.Label
 
NAMESPACE - Static variable in class ome.xml.model.Laser
 
NAMESPACE - Static variable in class ome.xml.model.Leader
 
NAMESPACE - Static variable in class ome.xml.model.LightEmittingDiode
 
NAMESPACE - Static variable in class ome.xml.model.LightPath
 
NAMESPACE - Static variable in class ome.xml.model.LightSource
 
NAMESPACE - Static variable in class ome.xml.model.LightSourceSettings
 
NAMESPACE - Static variable in class ome.xml.model.Line
 
NAMESPACE - Static variable in class ome.xml.model.ListAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.LongAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.ManufacturerSpec
 
NAMESPACE - Static variable in class ome.xml.model.Mask
 
NAMESPACE - Static variable in class ome.xml.model.MetadataOnly
 
NAMESPACE - Static variable in class ome.xml.model.MicrobeamManipulation
 
NAMESPACE - Static variable in class ome.xml.model.MicrobeamManipulationRef
 
NAMESPACE - Static variable in class ome.xml.model.Microscope
 
NAMESPACE - Static variable in class ome.xml.model.NumericAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.Objective
 
NAMESPACE - Static variable in class ome.xml.model.ObjectiveSettings
 
NAMESPACE - Static variable in class ome.xml.model.OME
 
NAMESPACE - Static variable in class ome.xml.model.Pixels
 
NAMESPACE - Static variable in class ome.xml.model.Plane
 
NAMESPACE - Static variable in class ome.xml.model.Plate
 
NAMESPACE - Static variable in class ome.xml.model.PlateAcquisition
 
NAMESPACE - Static variable in class ome.xml.model.PlateRef
 
NAMESPACE - Static variable in class ome.xml.model.Point
 
NAMESPACE - Static variable in class ome.xml.model.Polygon
 
NAMESPACE - Static variable in class ome.xml.model.Polyline
 
NAMESPACE - Static variable in class ome.xml.model.Project
 
NAMESPACE - Static variable in class ome.xml.model.ProjectRef
 
NAMESPACE - Static variable in class ome.xml.model.Pump
 
NAMESPACE - Static variable in class ome.xml.model.Reagent
 
NAMESPACE - Static variable in class ome.xml.model.ReagentRef
 
NAMESPACE - Static variable in class ome.xml.model.Rectangle
 
NAMESPACE - Static variable in class ome.xml.model.Reference
 
NAMESPACE - Static variable in class ome.xml.model.Rights
 
NAMESPACE - Static variable in class ome.xml.model.ROI
 
NAMESPACE - Static variable in class ome.xml.model.ROIRef
 
NAMESPACE - Static variable in class ome.xml.model.Screen
 
NAMESPACE - Static variable in class ome.xml.model.Settings
 
NAMESPACE - Static variable in class ome.xml.model.Shape
 
NAMESPACE - Static variable in class ome.xml.model.StageLabel
 
NAMESPACE - Static variable in class ome.xml.model.StructuredAnnotations
 
NAMESPACE - Static variable in class ome.xml.model.TagAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.TermAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.TextAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.TiffData
 
NAMESPACE - Static variable in class ome.xml.model.TimestampAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.TransmittanceRange
 
NAMESPACE - Static variable in class ome.xml.model.TypeAnnotation
 
NAMESPACE - Static variable in class ome.xml.model.Union
 
NAMESPACE - Static variable in class ome.xml.model.UUID
 
NAMESPACE - Static variable in class ome.xml.model.Well
 
NAMESPACE - Static variable in class ome.xml.model.WellSample
 
NAMESPACE - Static variable in class ome.xml.model.WellSampleRef
 
NAMESPACE - Static variable in class ome.xml.model.XMLAnnotation
 
NameXPtg - Class in loci.poi.hssf.record.formula
 
NameXPtg(String) - Constructor for class loci.poi.hssf.record.formula.NameXPtg

Creates new NamePtg

NameXPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NameXPtg

Creates new NamePtg

NamingConvention - Enum in ome.xml.model.enums
 
NamingConventionEnumHandler - Class in ome.xml.model.enums.handlers

Enumeration handler for NamingConvention.

NamingConventionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.NamingConventionEnumHandler
 
nativeMetadataFormatClassName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
 
nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
 
nativeMetadataFormatName - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
 
NativeND2Reader - Class in loci.formats.in

NativeND2Reader is the file format reader for Nikon ND2 files.

NativeND2Reader() - Constructor for class loci.formats.in.NativeND2Reader

Constructs a new ND2 reader.

NativeQTReader - Class in loci.formats.in

NativeQTReader is the file format reader for QuickTime movie files.

NativeQTReader() - Constructor for class loci.formats.in.NativeQTReader

Constructs a new QuickTime reader.

nativeReader - Variable in class loci.formats.DelegateReader

Native reader.

nativeReaderInitialized - Variable in class loci.formats.DelegateReader

Flag indicating that the native reader was successfully initialized.

NativeServices - Class in jj2000.j2k.util

This class presents a collection of static methods that allow access to
 some native methods.

nblk - Variable in class jj2000.j2k.codestream.PrecInfo

Number of code-blocks in each subband belonging to this precinct

nc - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The number of components

nc - Variable in class jj2000.j2k.image.input.ImgReader

The number of components in the image

nComp - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder

The number of components in the image

nComp - Variable in class jj2000.j2k.ModuleSpec

The number of components

ncx - Variable in class loci.formats.in.SDTInfo
 
ncy - Variable in class loci.formats.in.SDTInfo
 
ND2_MAGIC_BYTES_1 - Static variable in class loci.formats.in.NativeND2Reader
 
ND2_MAGIC_BYTES_2 - Static variable in class loci.formats.in.NativeND2Reader
 
ND2Handler - Class in loci.formats.in

DefaultHandler implementation for handling XML produced by Nikon Elements.

ND2Handler(List<CoreMetadata>, int) - Constructor for class loci.formats.in.ND2Handler
 
ND2Handler(List<CoreMetadata>, boolean, int) - Constructor for class loci.formats.in.ND2Handler
 
ND2Reader - Class in loci.formats.in

ND2Reader is the file format reader for Nikon ND2 files.

ND2Reader() - Constructor for class loci.formats.in.ND2Reader

Constructs a new ND2 reader.

ND2Widgets - Class in loci.plugins.config

Custom widgets for configuring Bio-Formats ND2 support.

ND2Widgets() - Constructor for class loci.plugins.config.ND2Widgets
 
ND_SUFFIX - Static variable in class loci.formats.in.MetamorphReader
 
ndata - Variable in class jj2000.j2k.codestream.writer.CodestreamWriter

The number of bytes already written to the bit stream

ndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Number of bits in the output bit buffer.

NDPIReader - Class in loci.formats.in

NDPIReader is the file format reader for Hamamatsu .ndpi files.

NDPIReader() - Constructor for class loci.formats.in.NDPIReader

Constructs a new NDPI reader.

NDPISReader - Class in loci.formats.in

NDPISReader is the file format reader for Hamamatsu .ndpis files.

NDPISReader() - Constructor for class loci.formats.in.NDPISReader

Constructs a new NDPIS reader.

needLegacy - Variable in class loci.formats.out.QTWriter

Whether we need the legacy writer.

needPrompt() - Method in class loci.plugins.in.ColorDialog
 
needPrompt() - Method in class loci.plugins.in.CropDialog
 
needPrompt() - Method in class loci.plugins.in.FilePatternDialog
 
needPrompt() - Method in class loci.plugins.in.IdDialog
 
needPrompt() - Method in class loci.plugins.in.ImporterDialog
 
needPrompt() - Method in class loci.plugins.in.LocationDialog
 
needPrompt() - Method in class loci.plugins.in.MainDialog
 
needPrompt() - Method in class loci.plugins.in.MemoryDialog
 
needPrompt() - Method in class loci.plugins.in.RangeDialog
 
needPrompt() - Method in class loci.plugins.in.SeriesDialog
 
needPrompt() - Method in class loci.plugins.in.SwapDialog
 
needPrompt() - Method in class loci.plugins.in.UpgradeDialog
 
NEF_SUFFIX - Static variable in class loci.formats.in.NikonReader
 
NetCDFService - Interface in loci.formats.services

Utility class for working with NetCDF/HDF files.

NetCDFServiceImpl - Class in loci.formats.services

Utility class for working with NetCDF/HDF files.

NetCDFServiceImpl() - Constructor for class loci.formats.services.NetCDFServiceImpl

Default constructor.

NEW_SUBFILE_TYPE - Static variable in class loci.formats.tiff.IFD
 
NEW_SUBFILE_TYPE_REDUCED_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "NewSubfileType" tag.

NEW_SUBFILE_TYPE_SINGLE_PAGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "NewSubfileType" tag.

NEW_SUBFILE_TYPE_TRANSPARENCY - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet

A mask to be used with the "NewSubfileType" tag.

newDocumentSummaryInformation() - Static method in class loci.poi.hpsf.PropertySetFactory

Creates a new document summary information.

newOrder - Variable in class loci.formats.AxisGuesser

Adjusted ordering of internal dimensional axes.

newSummaryInformation() - Static method in class loci.poi.hpsf.PropertySetFactory

Creates a new summary information.

newVersionAvailable(String) - Method in class loci.formats.UpgradeChecker

Contact the OME registry and return true if a new version is available.

newVersionAvailable(String, String) - Method in class loci.formats.UpgradeChecker

Contact the OME registry and return true if a new version is available.

next() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate.MyIterator
 
next() - Method in interface mdbtools.dbengine.Data

goto the next (or first) row

next() - Method in class mdbtools.dbengine.MemoryData

goto the next (or first) row

nextBlockOffs - Variable in class loci.formats.in.SDTInfo

Offset to the data block header of the next data block.

nextChName - Variable in class loci.formats.in.BaseZeissReader
 
nextEmWave - Variable in class loci.formats.in.BaseZeissReader
 
nextExWave - Variable in class loci.formats.in.BaseZeissReader
 
nextLetter() - Method in class loci.formats.ResourceNamer

Increments the internal alphabet pointer to the next element of the
 alphabet.

nextRecord() - Method in class loci.poi.hssf.record.RecordInputStream

Moves to the next record in the stream.

nextSegment(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder

Resets the MQ decoder to start a new segment.

nextSid - Variable in class loci.poi.hssf.record.RecordInputStream
 
nextState(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor

Return min of maxOffset or offset of first pixel
 different from pixel at bitOffset.

nextSubband() - Method in class jj2000.j2k.wavelet.Subband

Returns the next subband in the same resolution level, following the
 subband index order.

nextTile() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent

Advances to the next tile, in standard scan-line order (by rows
 then columns).

nextTile() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder

Advances to the next tile, in standard scan-line order (by rows
 then columns).

nextTile() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in interface jj2000.j2k.image.ImgData

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.image.ImgDataAdapter

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.image.ImgDataJoiner

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.image.input.ImgReader

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf

Advances to the next tile, in standard scan-line order (by rows
 then columns).

nextTile() - Method in class jj2000.j2k.image.Tiler

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.roi.encoder.ROIScaler

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData

Advances to the next tile, in standard scan-line order (by rows then
 columns).

nextTile() - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter

Advances to the next tile, in standard scan-line order (by rows then
 columns).

NiftiReader - Class in loci.formats.in

NiftiReader is the file format reader for NIfTI files.

NiftiReader() - Constructor for class loci.formats.in.NiftiReader

Constructs a new NIfTI reader.

NikonCodec - Class in loci.formats.codec

This class implements Nikon decompression.

NikonCodec() - Constructor for class loci.formats.codec.NikonCodec
 
NikonCodecOptions - Class in loci.formats.codec

Options for compressing and decompressing Nikon NEF data.

NikonCodecOptions() - Constructor for class loci.formats.codec.NikonCodecOptions
 
NikonElementsTiffReader - Class in loci.formats.in

NikonElementsTiffReader is the file format reader for TIFF files produced
 by Nikon Elements.

NikonElementsTiffReader() - Constructor for class loci.formats.in.NikonElementsTiffReader
 
NikonReader - Class in loci.formats.in

NikonReader is the file format reader for Nikon NEF (TIFF) files.

NikonReader() - Constructor for class loci.formats.in.NikonReader

Constructs a new Nikon reader.

NikonTiffReader - Class in loci.formats.in

NikonTiffReader is the file format reader for Nikon TIFF files.

NikonTiffReader() - Constructor for class loci.formats.in.NikonTiffReader
 
NIOByteBufferProvider - Class in loci.common

Provides a facade to byte buffer allocation that enables
 FileChannel.map() usage on platforms where it's unlikely to
 give us problems and heap allocation where it is.

NIOByteBufferProvider(FileChannel, FileChannel.MapMode) - Constructor for class loci.common.NIOByteBufferProvider

Default constructor.

NIOFileHandle - Class in loci.common

A wrapper for buffered NIO logic that implements the IRandomAccess interface.

NIOFileHandle(File, String, int) - Constructor for class loci.common.NIOFileHandle

Creates a random access file stream to read from, and
 optionally to write to, the file specified by the File argument.

NIOFileHandle(File, String) - Constructor for class loci.common.NIOFileHandle

Creates a random access file stream to read from, and
 optionally to write to, the file specified by the File argument.

NIOFileHandle(String, String) - Constructor for class loci.common.NIOFileHandle

Creates a random access file stream to read from, and
 optionally to write to, a file with the specified name.

NIOInputStream - Class in loci.common

NIOInputStream provides methods for "intelligent" reading of files
 and byte arrays.

NIOInputStream(String) - Constructor for class loci.common.NIOInputStream

Constructs an NIOInputStream around the given file.

NIOInputStream(IRandomAccess) - Constructor for class loci.common.NIOInputStream

Constructs a random access stream around the given handle.

NIOInputStream(byte[]) - Constructor for class loci.common.NIOInputStream

Constructs a random access stream around the given byte array.

nl - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The number of layers in the coded data.

NL - Static variable in class loci.formats.in.ICSReader

Newline characters.

nls - Variable in class jj2000.j2k.decoder.DecoderSpecs

Number of layers specifications

NO_FILL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
NO_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle

No background

NO_FONT - Static variable in class loci.poi.hssf.usermodel.HSSFRichTextString

Place holder for indicating that NO_FONT has been applied here

NO_J2K_MSG - Static variable in class loci.formats.services.JAIIIOServiceImpl
 
NO_LICENSE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl

Message to display if no LuraWave license code is given.

NO_LURAWAVE_MSG - Static variable in class loci.formats.services.LuraWaveServiceImpl

Message displayed if the LuraWave LWF decoder library is not found.

NO_NETCDF_MSG - Static variable in class loci.formats.services.NetCDFServiceImpl
 
NO_OME_XML_MSG - Static variable in class loci.formats.services.OMEXMLServiceImpl
 
NO_QT_MSG - Static variable in class loci.formats.gui.LegacyQTTools
 
NO_WLZ_MSG - Static variable in class loci.formats.in.WlzReader
 
NO_WLZ_MSG - Static variable in class loci.formats.out.WlzWriter
 
NO_WLZ_MSG - Static variable in class loci.formats.services.WlzServiceImpl
 
NoExtensionFileFilter - Class in loci.formats.gui

A file filter that selects files with no extension,
 for use with a JFileChooser.

NoExtensionFileFilter() - Constructor for class loci.formats.gui.NoExtensionFileFilter
 
NoFormatIDException - Exception in loci.poi.hpsf

This exception is thrown if a MutablePropertySet is to be written
 but does not have a formatID set (see MutableSection.setFormatID(ClassID) or
 MutableSection.setFormatID(byte[]).

NoFormatIDException() - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

NoFormatIDException(String) - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

NoFormatIDException(Throwable) - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

NoFormatIDException(String, Throwable) - Constructor for exception loci.poi.hpsf.NoFormatIDException

Constructor

noise(double) - Method in class loci.plugins.util.RecordedImageProcessor
 
nomCBlkH - Variable in class jj2000.j2k.wavelet.Subband

The nominal code-block height

nomCBlkW - Variable in class jj2000.j2k.wavelet.Subband

The nominal code-block width

NON_GRAPHICS_DOMAINS - Static variable in class loci.formats.FormatTools

List of non-graphics domains.

NON_HCS_DOMAINS - Static variable in class loci.formats.FormatTools

List of non-HCS domains.

NON_SPECIAL_DOMAINS - Static variable in class loci.formats.FormatTools

List of domains that do not require special handling.

NonAggregateQuery - Class in mdbtools.dbengine.tasks

resolve the columns, num rows stays same

NonAggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.NonAggregateQuery
 
NONE - Static variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf

Identifier for no component transformation.

NONE - Static variable in class jj2000.j2k.image.invcomptransf.InvCompTransf

Identifier for no component transformation.

NONE - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
NoNextElementException - Exception in jj2000.j2k

This exception is thrown whenever a next???? method is called and
 there is no next element to return.

NoNextElementException() - Constructor for exception jj2000.j2k.NoNextElementException

Constructs a new NoNextElementException exception with no
 detail message.

NoNextElementException(String) - Constructor for exception jj2000.j2k.NoNextElementException

Constructs a new NoNextElementException exception with
 the specified detail message.

NonNegativeFloat - Class in ome.xml.model.primitives

A float whose constraints are bound to Java's 64-bit float (double) and a
 further non-negative restriction.

NonNegativeFloat(Double) - Constructor for class ome.xml.model.primitives.NonNegativeFloat
 
NonNegativeInteger - Class in ome.xml.model.primitives

An integer whose constraints are bound to Java's 32-bit signed integer type
 and a further non-negative restriction.

NonNegativeInteger(Integer) - Constructor for class ome.xml.model.primitives.NonNegativeInteger
 
NonNegativeLong - Class in ome.xml.model.primitives

An integer whose constraints are bound to Java's 64-bit signed integer type
 and a further non-negative restriction.

NonNegativeLong(Long) - Constructor for class ome.xml.model.primitives.NonNegativeLong
 
noOfDataBlocks - Variable in class loci.formats.in.SDTInfo

no_of_data_blocks valid only when in 0 ..

noOfMeasDescBlocks - Variable in class loci.formats.in.SDTInfo
 
NoPropertySetStreamException - Exception in loci.poi.hpsf

This exception is thrown if a format error in a property set stream is
 detected or when the input data do not constitute a property set stream.

NoPropertySetStreamException() - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

NoPropertySetStreamException(String) - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

NoPropertySetStreamException(Throwable) - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

NoPropertySetStreamException(String, Throwable) - Constructor for exception loci.poi.hpsf.NoPropertySetStreamException

Constructor

noQT - Variable in class loci.formats.gui.LegacyQTTools

Flag indicating QuickTime for Java is not installed.

NORMAL_MENU - Static variable in class loci.plugins.shortcut.ShortcutPanel

Name of the 'Bio-Formats' submenu.

NORMAL_PRIORITY - Static variable in interface loci.formats.cache.ICacheStrategy
 
normalizeData - Variable in class loci.formats.FormatReader

Whether or not to normalize float data.

normalizeDoubles(double[]) - Static method in class loci.common.DataTools

Normalize the given double array so that the minimum value maps to 0.0
 and the maximum value maps to 1.0.

normalizeFloats(float[]) - Static method in class loci.common.DataTools

Normalize the given float array so that the minimum value maps to 0.0
 and the maximum value maps to 1.0.

NoSingleSectionException - Exception in loci.poi.hpsf

This exception is thrown if one of the PropertySet's
 convenience methods that require a single Section is called
 and the PropertySet does not contain exactly one Section.

NoSingleSectionException() - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

NoSingleSectionException(String) - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

NoSingleSectionException(Throwable) - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

NoSingleSectionException(String, Throwable) - Constructor for exception loci.poi.hpsf.NoSingleSectionException

Constructor

noskip_del - Variable in class mdbtools.libmdb.MdbTableDef
 
noSubresolutions - Variable in class loci.formats.in.MinimalTiffReader
 
NOT_EQUALS - Static variable in class mdbtools.dbengine.sql.Equation
 
NOTE_HIDDEN - Static variable in class loci.poi.hssf.record.NoteRecord

Flag indicating that the comment is hidden (default)

NOTE_NAMES - Static variable in class loci.formats.in.BioRadReader

List of note types.

NOTE_TYPE_4D_SERIES - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_ARROW - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_COLLECT - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_FILE1 - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_FILE2 - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_LINE - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_LIVE - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_MERGE - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_NUMBER - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_SCALEBAR - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_STRUCTURE - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_THRUVIEW - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_USER - Static variable in class loci.formats.in.BioRadReader
 
NOTE_TYPE_VARIABLE - Static variable in class loci.formats.in.BioRadReader
 
NOTE_VISIBLE - Static variable in class loci.poi.hssf.record.NoteRecord

Flag indicating that the comment is visible

NotEqualPtg - Class in loci.poi.hssf.record.formula

Ptg class to implement not equal

NotEqualPtg() - Constructor for class loci.poi.hssf.record.formula.NotEqualPtg

Creates new NotEqualPtg

NotEqualPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NotEqualPtg
 
NoteRecord - Class in loci.poi.hssf.record

NOTE: Comment Associated with a Cell (1Ch)

NoteRecord() - Constructor for class loci.poi.hssf.record.NoteRecord

Construct a new NoteRecord and
 fill its data with the default values

NoteRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NoteRecord

Constructs a NoteRecord and fills its fields
 from the supplied RecordInputStream.

notes - Variable in class loci.plugins.config.LibraryEntry
 
NoteStructureSubRecord - Class in loci.poi.hssf.record

Represents a NoteStructure (0xD) sub record.

NoteStructureSubRecord() - Constructor for class loci.poi.hssf.record.NoteStructureSubRecord

Construct a new NoteStructureSubRecord and
 fill its data with the default values

NoteStructureSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NoteStructureSubRecord

Constructs a NoteStructureSubRecord and sets its fields appropriately.

notifyListeners(StatusEvent) - Method in interface loci.common.StatusReporter
 
notifyListeners(CacheEvent) - Method in class loci.formats.cache.Cache

Informs listeners of a cache update.

notifyListeners(CacheEvent) - Method in class loci.formats.cache.CacheStrategy

Informs listeners of a cache update.

notifyListeners(StatusEvent) - Method in class loci.plugins.in.ImagePlusReader
 
notifyListeners(StatusEvent) - Method in class loci.plugins.in.ImportProcess
 
NotImplementedError - Error in jj2000.j2k

This exception is thrown whenever a feature or functionality that
 has not been implemented is calle.

NotImplementedError() - Constructor for error jj2000.j2k.NotImplementedError

Constructs a new NotImplementedError exception with
 the default detail message.

NotImplementedError(String) - Constructor for error jj2000.j2k.NotImplementedError

Constructs a new NotImplementedError exception with
 the specified detail message m.

nrc - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator

Number of components

nROIbp - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

Number of ROI magnitude bit-planes

nROIcoeff - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The number of ROI coefficients in the code-block

nROIcoeff - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData

Number of ROI coefficients in the code-block

nROIcp - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

Number of ROI coding passes

NRRD_MAGIC_STRING - Static variable in class loci.formats.in.NRRDReader
 
NRRDReader - Class in loci.formats.in

File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.

NRRDReader() - Constructor for class loci.formats.in.NRRDReader

Constructs a new NRRD reader.

nSlider - Variable in class loci.formats.gui.ImageViewer
 
nStep - Variable in class jj2000.j2k.quantization.dequantizer.StdDequantizerParams

The quantization step for non-reversible systems, normalized to a
 dynamic range of 1, for each resolution level and subband, as derived
 from the exponent-mantissa representation in the codestream.

nStreams - Variable in class loci.formats.tools.AmiraParameters
 
nt - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The total number of tiles.

ntH - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The nominal tile height, in the hi-res reference grid

nTileParts - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder

The number of tile parts per tile

nTiles - Variable in class jj2000.j2k.ModuleSpec

The number of tiles

nTotTrunc - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The total number of truncation points

ntp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo

The number of truncation point for each layer

nTrunc - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk

The total number of truncation points from layer 1 to the last one in
 this object.

ntW - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The nominal tile width, in the hi-res reference grid

ntX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The number of tile in the horizontal direction

ntY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent

The number of tiles in the vertical direction

NULL - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
 
NullEscherSerializationListener - Class in loci.poi.ddf

Ignores all serialization events.

NullEscherSerializationListener() - Constructor for class loci.poi.ddf.NullEscherSerializationListener
 
NullLogger - Class in loci.poi.util

A logger class that strives to make it as easy as possible for
 developers to write log calls, while simultaneously making those
 calls as cheap as possible by performing lazy evaluation of the log
 message.

NullLogger() - Constructor for class loci.poi.util.NullLogger
 
num_catalog - Variable in class mdbtools.libmdb.MdbHandle
 
num_cols - Variable in class mdbtools.libmdb.MdbTableDef
 
NUM_EMPTY_PASSES_IN_MS_BP - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The number of empty passes in the most significant bit-plane.

num_idxs - Variable in class mdbtools.libmdb.MdbTableDef
 
NUM_NON_BYPASS_MS_BP - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The number of most significant bit-planes where bypass mode is not to
 be used, even if bypass mode is on: 4.

NUM_PASSES - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions

The number of coding passes per bit-plane.

num_props - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
num_real_idxs - Variable in class mdbtools.libmdb.MdbTableDef
 
num_rows - Variable in class mdbtools.libmdb.MdbTableDef
 
num_sargs - Variable in class mdbtools.libmdb.MdbColumn
 
NUMBER_OF_INKS - Static variable in class loci.formats.tiff.IFD
 
NumberFilter - Class in loci.formats

NumberFilter is a helper filter for FilePattern.findPattern().

NumberFilter(String, String) - Constructor for class loci.formats.NumberFilter

Creates a filter for files containing a numerical block,
 sandwiched between the given strings.

NumberFormatIndexRecord - Class in loci.poi.hssf.record

The number format index record indexes format table.

NumberFormatIndexRecord() - Constructor for class loci.poi.hssf.record.NumberFormatIndexRecord
 
NumberFormatIndexRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NumberFormatIndexRecord

Constructs a NumberFormatIndex record and sets its fields appropriately.

NumberPtg - Class in loci.poi.hssf.record.formula

Number
 Stores a floating point value in a formula
 value stored in a 8 byte field using IEEE notation

NumberPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.NumberPtg

Create a NumberPtg from a byte array read from disk

NumberPtg(String) - Constructor for class loci.poi.hssf.record.formula.NumberPtg

Create a NumberPtg from a string representation of  the number
  Number format is not checked, it is expected to be validated in the parser
   that calls this method.

NumberRecord - Class in loci.poi.hssf.record

Contains a numeric cell value.

NumberRecord() - Constructor for class loci.poi.hssf.record.NumberRecord

Creates new NumberRecord

NumberRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.NumberRecord

Constructs a Number record and sets its fields appropriately.

numBytes - Variable in class loci.formats.out.QTWriter

Total number of pixel bytes.

numCb - Variable in class jj2000.j2k.wavelet.Subband

The number of code-blocks (in both directions) contained in this
 subband.

numDecompositionLevels - Variable in class loci.formats.codec.JPEG2000CodecOptions

The number of decomposition levels as would be provided to:
 J2KImageWriteParam.setNumDecompositionLevels(int)
 (WRITE).

numer - Variable in class loci.formats.tiff.TiffRational

Components of the rational's fractional representation.

NumericAnnotation - Class in ome.xml.model
 
NumericAnnotation() - Constructor for class ome.xml.model.NumericAnnotation

Default constructor.

NumericAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.NumericAnnotation

Constructs NumericAnnotation recursively from an XML DOM tree.

NumericAnnotation(NumericAnnotation) - Constructor for class ome.xml.model.NumericAnnotation

Copy constructor.

numFloatsPerSection - Variable in class loci.formats.in.DeltavisionReader
 
numfonts - Variable in class loci.poi.hssf.model.Workbook
 
numFormattingRuns() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
 
numIntsPerSection - Variable in class loci.formats.in.DeltavisionReader

The number of ints in each extended header section.

numLayers - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator

The number of layers.

numMergedRegions - Variable in class loci.poi.hssf.model.Sheet
 
numNodes - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
 
numPages() - Static method in class loci.poi.hssf.usermodel.HSSFFooter

Returns the string representing the number of pages.

numPages() - Static method in class loci.poi.hssf.usermodel.HSSFHeader

Returns the string representing the number of pages.

numTo26Sys(int) - Method in class loci.poi.hssf.util.RangeAddress
 
numTruncPnts - Variable in class jj2000.j2k.codestream.reader.PktInfo

The number of truncation points that appear in this packet, and all
 previous packets, for this code-block.

numxfs - Variable in class loci.poi.hssf.model.Workbook
 
nVldTrunc - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats

The number of valid truncation points





O

OBFReader - Class in loci.formats.in

OBFReader is the file format reader for Imspector OBF files.

OBFReader() - Constructor for class loci.formats.in.OBFReader
 
OBJECT_DROPPED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating an object has been removed from the cache.

OBJECT_LOADED - Static variable in class loci.formats.cache.CacheEvent

Event type indicating an object has been added to the cache.

object_name - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
object_type - Variable in class mdbtools.libmdb.MdbCatalogEntry
 
OBJECT_TYPE_ARC - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_BUTTON - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_CHART - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_CHECKBOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_COMBO_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_COMMENT - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_COMMENT - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape
 
OBJECT_TYPE_DIALOG_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_EDIT_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_GROUP - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_GROUP_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_LABEL - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_LINE - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_LINE - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape
 
OBJECT_TYPE_LIST_BOX - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_MICROSOFT_OFFICE_DRAWING - Static variable in class loci.poi.hssf.model.PolygonShape
 
OBJECT_TYPE_MICROSOFT_OFFICE_DRAWING - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_OPTION_BUTTON - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_OVAL - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_OVAL - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape
 
OBJECT_TYPE_PICTURE - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_PICTURE - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape
 
OBJECT_TYPE_POLYGON - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RECTANGLE - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RECTANGLE - Static variable in class loci.poi.hssf.usermodel.HSSFSimpleShape
 
OBJECT_TYPE_RESERVED1 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED2 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED3 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED4 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED5 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED6 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED7 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED8 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_RESERVED9 - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_SCROLL_BAR - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_SPINNER - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_TEXT - Static variable in class loci.poi.hssf.record.CommonObjectDataSubRecord
 
OBJECT_TYPE_TEXT - Static variable in class loci.poi.hssf.usermodel.HSSFTextbox
 
Objective - Class in ome.xml.model
 
Objective() - Constructor for class ome.xml.model.Objective

Default constructor.

Objective(Ele