- A4_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
-
- A5_PAPERSIZE - Static variable in class loci.poi.hssf.usermodel.HSSFPrintSetup
-
- abort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- AbortableHSSFListener - Class in loci.poi.hssf.eventusermodel
-
Interface for use with the HSSFRequest and HSSFEventFactory.
- AbortableHSSFListener() - Constructor for class loci.poi.hssf.eventusermodel.AbortableHSSFListener
-
- abortableProcessEvents(HSSFRequest, InputStream) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory
-
Processes a DocumentInputStream into essentially Record events.
- abortableProcessRecord(Record) - Method in class loci.poi.hssf.eventusermodel.AbortableHSSFListener
-
Process an HSSF Record.
- abortableProcessWorkbookEvents(HSSFRequest, POIFSFileSystem) - Method in class loci.poi.hssf.eventusermodel.HSSFEventFactory
-
Processes a file into essentially record events.
- About - Class in loci.plugins
-
Displays a small information dialog about the Bio-Formats Plugins package.
- About() - Constructor for class loci.plugins.About
-
- about() - Static method in class loci.plugins.About
-
- abs() - Method in class loci.plugins.util.RecordedImageProcessor
-
- AbstractEscherHolderRecord - Class in loci.poi.hssf.record
-
The escher container record is used to hold escher records.
- AbstractEscherHolderRecord() - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- AbstractEscherHolderRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AbstractEscherHolderRecord
-
Constructs a Bar record and sets its fields appropriately.
- AbstractFunctionPtg - Class in loci.poi.hssf.record.formula
-
This class provides the base functionality for Excel sheet functions
There are two kinds of function Ptgs - tFunc and tFuncVar
Therefore, this class will have ONLY two subclasses
- AbstractFunctionPtg() - Constructor for class loci.poi.hssf.record.formula.AbstractFunctionPtg
-
- AbstractNIOHandle - Class in loci.common
-
A wrapper for buffered NIO logic that implements the IRandomAccess interface.
- AbstractNIOHandle() - Constructor for class loci.common.AbstractNIOHandle
-
- AbstractOMEModelObject - Class in ome.xml.model
-
- AbstractOMEModelObject() - Constructor for class ome.xml.model.AbstractOMEModelObject
-
- AbstractOMEXMLMetadata - Class in loci.formats.ome
-
- AbstractOMEXMLMetadata() - Constructor for class loci.formats.ome.AbstractOMEXMLMetadata
-
- AbstractOMEXMLMetadata - Class in ome.xml.meta
-
A utility class for constructing and manipulating OME-XML DOMs.
- AbstractOMEXMLMetadata() - Constructor for class ome.xml.meta.AbstractOMEXMLMetadata
-
Creates a new OME-XML metadata object.
- AbstractService - Class in loci.common.services
-
- AbstractService() - Constructor for class loci.common.services.AbstractService
-
- AbstractShape - Class in loci.poi.hssf.model
-
An abstract shape is the lowlevel model for a shape.
- AbstractShape() - Constructor for class loci.poi.hssf.model.AbstractShape
-
- accept(File) - Method in class loci.formats.gui.ComboFileFilter
-
Accepts files with the proper filename prefix.
- accept(File) - Method in class loci.formats.gui.ExtensionFileFilter
-
Accepts files with the proper extensions.
- accept(File) - Method in class loci.formats.gui.FormatFileFilter
-
Accepts files in accordance with the file format reader.
- accept(File) - Method in class loci.formats.gui.NoExtensionFileFilter
-
Accepts files with no extension.
- accept(String) - Method in class loci.formats.NumberFilter
-
Tests if a specified file should be included in a file list.
- accept(File) - Method in class loci.formats.NumberFilter
-
Tests if a specified file should be included in a file list.
- accumulate - Variable in class loci.formats.in.SDTInfo
-
- AcquisitionMode - Enum in ome.xml.model.enums
-
- AcquisitionModeEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for AcquisitionMode.
- AcquisitionModeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.AcquisitionModeEnumHandler
-
- actionPerformed(ActionEvent) - Method in class loci.formats.gui.CacheComponent
-
Handles combo box changes.
- actionPerformed(ActionEvent) - Method in class loci.formats.gui.DataConverter
-
- actionPerformed(ActionEvent) - Method in class loci.formats.gui.ImageViewer
-
Handles menu commands.
- actionPerformed(ActionEvent) - Method in class loci.formats.tools.EditTiffG
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.config.ConfigWindow
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.in.SeriesDialog
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.shortcut.ShortcutPanel
-
Handles button presses.
- actionPerformed(ActionEvent) - Method in class loci.plugins.util.DataBrowser
-
- actionPerformed(ActionEvent) - Method in class loci.plugins.util.SearchableWindow
-
- ACTIVE_PANE_LOWER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- ACTIVE_PANE_LOWER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- ACTIVE_PANE_UPER_LEFT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- ACTIVE_PANE_UPPER_RIGHT - Static variable in class loci.poi.hssf.record.PaneRecord
-
- activeSrcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The height of the source region that will actually be copied
into the destination image, taking into account all
susbampling, offsetting, and clipping.
- activeSrcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The X coordinate of the upper-left source pixel that will
actually be copied into the destination image, taking into
account all subsampling, offsetting, and clipping.
- activeSrcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The Y coordinate of the upper-left source pixel that will
actually be copied into the destination image, taking into account
all subsampling, offsetting, and clipping.
- activeSrcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The width of the source region that will actually be copied
into the destination image, taking into account all
susbampling, offsetting, and clipping.
- adcDE - Variable in class loci.formats.in.SDTInfo
-
ADC sample delay (SPC-930).
- adcRE - Variable in class loci.formats.in.SDTInfo
-
- adcZoom - Variable in class loci.formats.in.SDTInfo
-
- add(byte) - Method in class loci.formats.codec.ByteVector
-
- add(byte[]) - Method in class loci.formats.codec.ByteVector
-
- add(byte[], int, int) - Method in class loci.formats.codec.ByteVector
-
- add(double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- add(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- add(int, Record) - Method in class loci.poi.hssf.model.WorkbookRecordList
-
- add(int, double) - Method in class loci.poi.util.DoubleList
-
add the specfied value at the specified index
- add(double) - Method in class loci.poi.util.DoubleList
-
Appends the specified element to the end of this list
- add(int, int) - Method in class loci.poi.util.IntList
-
add the specfied value at the specified index
- add(int) - Method in class loci.poi.util.IntList
-
Appends the specified element to the end of this list
- add(Object) - Method in class loci.poi.util.IntMapper
-
Appends the specified element to the end of this list
- add(int, short) - Method in class loci.poi.util.ShortList
-
add the specfied value at the specified index
- add(short) - Method in class loci.poi.util.ShortList
-
Appends the specified element to the end of this list
- add1DBits(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Get code for run and add to compressed bitstream.
- add2DBits(byte[], int, int[][], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Place entry from mode table into compressed bitstream.
- addAll(DoubleList) - Method in class loci.poi.util.DoubleList
-
Appends all of the elements in the specified collection to the
end of this list, in the order that they are returned by the
specified collection's iterator.
- addAll(int, DoubleList) - Method in class loci.poi.util.DoubleList
-
Inserts all of the elements in the specified collection into
this list at the specified position.
- addAll(IntList) - Method in class loci.poi.util.IntList
-
Appends all of the elements in the specified collection to the
end of this list, in the order that they are returned by the
specified collection's iterator.
- addAll(int, IntList) - Method in class loci.poi.util.IntList
-
Inserts all of the elements in the specified collection into
this list at the specified position.
- addAll(ShortList) - Method in class loci.poi.util.ShortList
-
Appends all of the elements in the specified collection to the
end of this list, in the order that they are returned by the
specified collection's iterator.
- addAll(int, ShortList) - Method in class loci.poi.util.ShortList
-
Inserts all of the elements in the specified collection into
this list at the specified position.
- addAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Adds a TIFFTagSet
object to the list of allowed
tag sets.
- addArea(int, short, int, short) - Method in class loci.poi.hssf.record.MergeCellsRecord
-
Add an area to consider a merged cell.
- addBinData(BinData) - Method in class ome.xml.model.Mask
-
- addBinData(BinData) - Method in class ome.xml.model.Pixels
-
- addBooleanAnnotation(BooleanAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addBreak(short, short, short) - Method in class loci.poi.hssf.record.PageBreakRecord
-
Adds the page break at the specified parameters
- addBSERecord(EscherBSERecord) - Method in class loci.poi.hssf.model.Workbook
-
- addByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Adds the specified data to the end of the byte array stream.
- addCacheListener(CacheListener) - Method in class loci.formats.cache.Cache
-
- addCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter
-
Adds a listener for status update events.
- addCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy
-
- addCellOffset(short) - Method in class loci.poi.hssf.record.DBCellRecord
-
- addChannel(Channel) - Method in class ome.xml.model.Pixels
-
- addChar(char, int) - Method in class loci.poi.hssf.usermodel.FontDetails
-
- addChars(char[], int[]) - Method in class loci.poi.hssf.usermodel.FontDetails
-
- AddCharString(short, byte) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
-
- addCheckbox(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog
-
Adds a checkbox to the given dialog object corresponding
to the boolean option identified by the specified key.
- addChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty
-
Add a new child to the collection of children
- addChild(Property) - Method in interface loci.poi.poifs.property.Parent
-
Add a new child to the collection of children
- addChildRecord(EscherRecord) - Method in class loci.poi.ddf.EscherContainerRecord
-
- addChildRecord(EscherRecord) - Method in class loci.poi.ddf.UnknownEscherRecord
-
- addChoice(GenericDialog, String) - Method in class loci.plugins.prefs.OptionsDialog
-
Adds a choice to the given dialog object corresponding
to the string option identified by the specified key.
- addClass(Class<? extends T>) - Method in class loci.formats.ClassList
-
Adds the given class, which must be assignable
to the base class, to the list.
- addCluster(int, int) - Method in class loci.poi.ddf.EscherDggRecord
-
- addColor(byte, byte, byte) - Method in class loci.poi.hssf.usermodel.HSSFPalette
-
Adds a new color into an empty color slot.
- addColumn(Object) - Method in class mdbtools.dbengine.sql.Select
-
- addComment(String) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- addCommentAnnotation(CommentAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addDataset(Dataset) - Method in class ome.xml.model.OME
-
- addDbcell(int) - Method in class loci.poi.hssf.record.IndexRecord
-
- addDetector(Detector) - Method in class ome.xml.model.Instrument
-
- addDichroic(Dichroic) - Method in class ome.xml.model.Instrument
-
- addDoubleAnnotation(DoubleAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addEntry(Comparable<Object>, DefaultListModel) - Static method in class loci.plugins.config.ConfigWindow
-
- addEOFB(byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Add an End-of-Facsimile-Block (EOFB == 0x001001) to the compressed
bitstream.
- addEOL(boolean, boolean, boolean, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Add an End-of-Line (EOL == 0x001) to the compressed bitstream
with optional byte alignment.
- addEscherProperty(EscherProperty) - Method in class loci.poi.ddf.EscherOptRecord
-
Add a property to this record.
- addEscherRecord(int, EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- addEscherRecord(EscherRecord) - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- addExperiment(Experiment) - Method in class ome.xml.model.OME
-
- addExperimenter(Experimenter) - Method in class ome.xml.model.OME
-
- addExperimenterGroup(ExperimenterGroup) - Method in class ome.xml.model.OME
-
- addFileAnnotation(FileAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addFilter(Filter) - Method in class ome.xml.model.Instrument
-
- addFilterSet(FilterSet) - Method in class ome.xml.model.Instrument
-
- addFormatRun(UnicodeString.FormatRun) - Method in class loci.poi.hssf.record.UnicodeString
-
Adds a font run to the formatted string.
- addGlobalMeta(String, Object) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, boolean) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, byte) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, short) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, int) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, long) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, float) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, double) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMeta(String, char) - Method in class loci.formats.FormatReader
-
Adds an entry to the global metadata table.
- addGlobalMetaList(String, Object) - Method in class loci.formats.FormatReader
-
- addGroupBy(FQColumn) - Method in class mdbtools.dbengine.sql.Select
-
- addImage(Image) - Method in class ome.xml.model.OME
-
- addInfoRecord(ExtSSTInfoSubRecord) - Method in class loci.poi.hssf.record.ExtSSTRecord
-
- addInstrument(Instrument) - Method in class ome.xml.model.OME
-
- addLightSource(LightSource) - Method in class ome.xml.model.Instrument
-
- addLightSourceSettings(LightSourceSettings) - Method in class ome.xml.model.MicrobeamManipulation
-
- addListAnnotation(ListAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addListener(HSSFListener, short) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest
-
add an event listener for a particular record type.
- addListenerForAllRecords(HSSFListener) - Method in class loci.poi.hssf.eventusermodel.HSSFRequest
-
This is the equivilent of calling addListener(myListener, sid) for EVERY
record in the loci.poi.hssf.record package.
- addLongAnnotation(LongAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addMergedRegion(int, short, int, short) - Method in class loci.poi.hssf.model.Sheet
-
- addMergedRegion(Region) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
adds a merged region of cells (hence those cells form one)
- addMeta(String, Object, Hashtable<String, Object>) - Method in class loci.formats.FormatReader
-
Adds an entry to the specified Hashtable.
- addMetadataOnly(OMEXMLMetadata, int) - Method in interface loci.formats.services.OMEXMLService
-
Insert a MetadataOnly element under the Image specified by 'index' in the
given OME-XML metadata object.
- addMetadataOnly(OMEXMLMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- addMicrobeamManipulation(MicrobeamManipulation) - Method in class ome.xml.model.Experiment
-
- addModelObject(String, OMEModelObject) - Method in interface ome.xml.model.OMEModel
-
- addModelObject(String, OMEModelObject) - Method in class ome.xml.model.OMEModelImpl
-
- addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in interface loci.formats.services.OMEXMLService
-
Adds ModuloAlong* annotations to the given OME-XML metadata object,
using the given CoreMetadata object to determine modulo dimensions.
- addModuloAlong(OMEXMLMetadata, CoreMetadata, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- addName(NameRecord) - Method in class loci.poi.hssf.model.Workbook
-
creates new name
- addNode(Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- addNTP(int, int) - Method in class jj2000.j2k.codestream.reader.CBlkInfo
-
Adds the number of new truncation for specified layer.
- addObjective(Objective) - Method in class ome.xml.model.Instrument
-
- addOptPoint(float, int) - Method in class jj2000.j2k.entropy.encoder.LayersInfo
-
Adds a new optimization point, with target bitrate 'brate' and with
'elyrs' (unoptimized) extra layers after it.
- addOrderBy(OrderBy) - Method in class mdbtools.dbengine.sql.Select
-
- addPicture(byte[], int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
Adds a picture to the workbook.
- addPlane(Plane) - Method in class ome.xml.model.Pixels
-
- addPlate(Plate) - Method in class ome.xml.model.OME
-
- addPlateAcquisition(PlateAcquisition) - Method in class ome.xml.model.Plate
-
- addPossible(String) - Method in class loci.plugins.prefs.StringOption
-
Adds a possible value to the list.
- addProject(Project) - Method in class ome.xml.model.OME
-
- addProperty(Property) - Method in class loci.poi.poifs.property.PropertyTable
-
Add a property to the list of properties we manage
- AddPtg - Class in loci.poi.hssf.record.formula
-
Addition operator PTG the "+" binomial operator.
- AddPtg() - Constructor for class loci.poi.hssf.record.formula.AddPtg
-
Creates new AddPtg
- AddPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AddPtg
-
- addReagent(Reagent) - Method in class ome.xml.model.Screen
-
- addReference(OMEModelObject, Reference) - Method in interface ome.xml.model.OMEModel
-
- addReference(OMEModelObject, Reference) - Method in class ome.xml.model.OMEModelImpl
-
- addREFRecord(ExternSheetSubRecord) - Method in class loci.poi.hssf.record.ExternSheetRecord
-
adds REF struct (ExternSheetSubRecord)
- addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- addRenderingHints(Map) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- addROI(ROI) - Method in class ome.xml.model.OME
-
- addRow(RowRecord) - Method in class loci.poi.hssf.model.Sheet
-
Adds a row record to the sheet
- addRow(Object[]) - Method in class mdbtools.dbengine.MemoryData
-
Add a row of data
- addScreen(Screen) - Method in class ome.xml.model.OME
-
- addScrollBars(Container) - Static method in class loci.plugins.util.WindowTools
-
Adds AWT scroll bars to the given container.
- addSection(Section) - Method in class loci.poi.hpsf.MutablePropertySet
-
Adds a section to this property set.
- addSection(Section) - Method in class loci.poi.hpsf.SpecialPropertySet
-
- addSeriesMeta(String, Object) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, boolean) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, byte) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, short) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, int) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, long) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, float) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, double) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMeta(String, char) - Method in class loci.formats.FormatReader
-
Adds an entry to the metadata table for the current series.
- addSeriesMetaList(String, Object) - Method in class loci.formats.FormatReader
-
- addShape(Shape) - Method in class ome.xml.model.Union
-
- addSheetReference(String, int) - Method in class loci.poi.hssf.util.SheetReferences
-
- addShortOrLongField(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- addSSTString(UnicodeString) - Method in class loci.poi.hssf.model.Workbook
-
Adds a string to the SST table and returns its index (if its a duplicate
just returns its index and update the counts) ASSUMES compressed unicode
(meaning 8bit)
- addSSTString(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
Deprecated.
Do not call this method from your applications. Use the methods
available in the HSSFRow to add string HSSFCells
- addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.AbstractShape
-
Add standard properties to the opt record.
- addStandardOptions(HSSFShape, EscherOptRecord) - Method in class loci.poi.hssf.model.CommentShape
-
Sets standard escher options for a comment.
- addStatusListener(StatusListener) - Method in interface loci.common.StatusReporter
-
- addStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader
-
- addStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess
-
- addString(UnicodeString) - Method in class loci.poi.hssf.record.SSTRecord
-
Add a string.
- addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Add a new string to the string table.
- addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Add a new string to the string table.
- addStringToTable(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Add a new string to the string table.
- addStringToTable(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Add a new string to the string table.
- addSubRecord(int, Object) - Method in class loci.poi.hssf.record.ObjRecord
-
- addSubRecord(Object) - Method in class loci.poi.hssf.record.ObjRecord
-
- addTable(Object) - Method in class mdbtools.dbengine.sql.Select
-
- addTagAnnotation(TagAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Adds an element to the group of
TIFFTagSet
s of which this
directory is aware.
- addTermAnnotation(TermAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addTiffData(TiffData) - Method in class ome.xml.model.Pixels
-
- addTIFFField(TIFFField) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Adds a TIFF field to the directory.
- addTimestampAnnotation(TimestampAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- addValueName(int, String) - Method in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Adds a mnemonic name for a particular value that this tag's
data may take on.
- addValueRecord(int, CellValueRecordInterface) - Method in class loci.poi.hssf.model.Sheet
-
Adds a value record to the sheet's contained binary records
(i.e.
- addWell(Well) - Method in class ome.xml.model.Plate
-
- addWellSample(WellSample) - Method in class ome.xml.model.Well
-
- addXMLAnnotation(XMLAnnotation) - Method in class ome.xml.model.StructuredAnnotations
-
- adjustmentValueChanged(AdjustmentEvent) - Method in class loci.plugins.util.DataBrowser
-
- AffineTransform - Class in ome.xml.model
-
- AffineTransform() - Constructor for class ome.xml.model.AffineTransform
-
Default constructor.
- AffineTransform(Element, OMEModel) - Constructor for class ome.xml.model.AffineTransform
-
Constructs AffineTransform recursively from an XML DOM tree.
- AffineTransform(AffineTransform) - Constructor for class ome.xml.model.AffineTransform
-
Copy constructor.
- AFIReader - Class in loci.formats.in
-
AFIReader is the file format reader for Aperio AFI files.
- AFIReader() - Constructor for class loci.formats.in.AFIReader
-
Constructs a new AFI reader.
- afterRecordSerialize(int, short, int, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener
-
Fired after a record has been serialized.
- afterRecordSerialize(int, short, int, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
-
- Aggregate - Interface in mdbtools.dbengine.functions
-
- aggregateDrawingRecords(DrawingManager2) - Method in class loci.poi.hssf.model.Sheet
-
- AggregateMetadata - Class in ome.xml.meta
-
A metadata store which delegates the actual storage to one or more sub
metadata stores.
- AggregateMetadata(List<BaseMetadata>) - Constructor for class ome.xml.meta.AggregateMetadata
-
Creates a new instance.
- AggregateQuery - Class in mdbtools.dbengine.tasks
-
resolve the columns, num rows not the same
- AggregateQuery(Task, Select, int[]) - Constructor for class mdbtools.dbengine.tasks.AggregateQuery
-
- AIMReader - Class in loci.formats.in
-
AIMReader is the file format reader for .aim files.
- AIMReader() - Constructor for class loci.formats.in.AIMReader
-
Constructs a new AIM reader.
- AL3D_MAGIC_STRING - Static variable in class loci.formats.in.AliconaReader
-
- AliconaReader - Class in loci.formats.in
-
AliconaReader is the file format reader for Alicona AL3D files.
- AliconaReader() - Constructor for class loci.formats.in.AliconaReader
-
Constructs a new Alicona reader.
- ALIGN_CENTER - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
center horizontal alignment
- ALIGN_CENTER_SELECTION - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
center-selection? horizontal alignment
- ALIGN_FILL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
fill? horizontal alignment
- ALIGN_GENERAL - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
general (normal) horizontal alignment
- ALIGN_JUSTIFY - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
justified horizontal alignment
- ALIGN_LEFT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
left-justified horizontal alignment
- ALIGN_RIGHT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
right-justified horizontal alignment
- ALL_DOMAINS - Static variable in class loci.formats.FormatTools
-
List of all supported domains.
- allBlockLengths - Variable in class loci.formats.in.SDTInfo
-
- allBlockOffsets - Variable in class loci.formats.in.SDTInfo
-
- allocate(int...) - Static method in class loci.common.DataTools
-
Allocates a 1-dimensional byte array matching the product of the given
sizes.
- allocate(long, int) - Method in class loci.common.NIOByteBufferProvider
-
Allocates or maps the desired file data into memory.
- allocateDirect(long, int) - Method in class loci.common.NIOByteBufferProvider
-
Allocates memory and copies the desired file data into it.
- allocateMappedByteBuffer(long, int) - Method in class loci.common.NIOByteBufferProvider
-
Memory maps the desired file data into memory.
- allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager
-
Allocates new shape id for the new drawing group id.
- allocateShapeId(short) - Method in class loci.poi.hssf.model.DrawingManager2
-
Allocates new shape id for the new drawing group id.
- allocateSpace(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
-
Allocate space for a block of indices
- allowShow - Variable in class loci.plugins.util.DataBrowser
-
- ALPHA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
The value of the first lifting step coefficient
- ALPHA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
The value of the first lifting step coefficient
- alphabeticIndexCount(String) - Static method in class loci.formats.ResourceNamer
-
- alphaMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- alreadyChecked() - Method in class loci.formats.UpgradeChecker
-
Return true if an upgrade check has already been performed in this
JVM session.
- ALT_BARS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- ALT_BARS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Wide dots
- alt_pg_buf - Variable in class mdbtools.libmdb.MdbHandle
-
- ALT_ZVI - Static variable in class loci.common.DateTools
-
- ALT_ZVI_EPOCH - Static variable in class loci.common.DateTools
-
- ALTITUDE_REF_SEA_LEVEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSAltitudeRef" tag.
- ALTITUDE_REF_SEA_LEVEL_REFERENCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSAltitudeRef" tag.
- AmiraParameters - Class in loci.formats.tools
-
AmiraParameters handles parsing and writing of AmiraMesh headers.
- AmiraParameters(String) - Constructor for class loci.formats.tools.AmiraParameters
-
- AmiraParameters(RandomAccessInputStream) - Constructor for class loci.formats.tools.AmiraParameters
-
- AmiraReader - Class in loci.formats.in
-
This is a file format reader for AmiraMesh data.
- AmiraReader() - Constructor for class loci.formats.in.AmiraReader
-
- analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Filters the input signal by this analysis filter, decomposing
it in a low-pass and a high-pass signal.
- analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
A specific version of the analyze_hpf() method that works on int
data.
- analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
The general version of the analyze_hpf() method, it just calls the
specialized version.
- analyze_hpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
An implementation of the analyze_hpf() method that works on int
data, for the forward 9x7 wavelet transform using the
lifting scheme.
- analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
A specific version of the analyze_hpf() method that works on int
data.
- analyze_hpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
The general version of the analyze_hpf() method, it just calls the
specialized version.
- analyze_hpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
An implementation of the analyze_hpf() method that works on int data,
for the forward 5x3 wavelet transform using the lifting scheme.
- analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Filters the input signal by this analysis filter, decomposing
it in a low-pass and a high-pass signal.
- analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
A specific version of the analyze_lpf() method that works on int
data.
- analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
The general version of the analyze_lpf() method, it just calls the
specialized version.
- analyze_lpf(float[], int, int, int, float[], int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
An implementation of the analyze_lpf() method that works on int
data, for the forward 9x7 wavelet transform using the
lifting scheme.
- analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
A specific version of the analyze_lpf() method that works on int
data.
- analyze_lpf(Object, int, int, int, Object, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
The general version of the analyze_lpf() method, it just calls the
specialized version.
- analyze_lpf(int[], int, int, int, int[], int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
An implementation of the analyze_lpf() method that works on int data,
for the forward 5x3 wavelet transform using the lifting scheme.
- AnalyzeReader - Class in loci.formats.in
-
AnalyzeReader is the file format reader for Analyze 7.5 files.
- AnalyzeReader() - Constructor for class loci.formats.in.AnalyzeReader
-
Constructs a new Analyze reader.
- anbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Actual number of read bytes
- ANCHOR_ID_CHART_TITLE - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_SERIES_OR_POINT - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_X_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_Y_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- ANCHOR_ID_Z_AXIS - Static variable in class loci.poi.hssf.record.ObjectLinkRecord
-
- and(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- AND - Static variable in class mdbtools.dbengine.sql.Condition
-
- anGainExp - Variable in class jj2000.j2k.wavelet.Subband
-
The base 2 exponent of the analysis gain of the subband.
- anim - Variable in class loci.formats.gui.ImageViewer
-
- anim - Variable in class loci.plugins.util.DataBrowser
-
- animate - Variable in class loci.plugins.util.DataBrowser
-
- ANIMATION_KEY - Static variable in class loci.formats.gui.ImageViewer
-
- Annotation - Class in ome.xml.model
-
- Annotation() - Constructor for class ome.xml.model.Annotation
-
Default constructor.
- Annotation(Element, OMEModel) - Constructor for class ome.xml.model.Annotation
-
Constructs Annotation recursively from an XML DOM tree.
- Annotation(Annotation) - Constructor for class ome.xml.model.Annotation
-
Copy constructor.
- AnnotationRef - Class in ome.xml.model
-
- AnnotationRef() - Constructor for class ome.xml.model.AnnotationRef
-
Default constructor.
- AnnotationRef(Element, OMEModel) - Constructor for class ome.xml.model.AnnotationRef
-
Constructs AnnotationRef recursively from an XML DOM tree.
- AnnotationRef(AnnotationRef) - Constructor for class ome.xml.model.AnnotationRef
-
Copy constructor.
- ANO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- ANSI_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
ANSI character set
- AnWTFilter - Class in jj2000.j2k.wavelet.analysis
-
This abstract class defines the methods of all analysis wavelet
filters.
- AnWTFilter() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilter
-
- AnWTFilterFloat - Class in jj2000.j2k.wavelet.analysis
-
This extends the analysis wavelet filter general definitions of
AnWTFilter by adding methods that work for float data
specifically.
- AnWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloat
-
- AnWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.analysis
-
This class inherits from the analysis wavelet filter definition
for int data.
- AnWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
- AnWTFilterInt - Class in jj2000.j2k.wavelet.analysis
-
This extends the analysis wavelet filter general definitions of
AnWTFilter by adding methods that work for int data
specifically.
- AnWTFilterInt() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterInt
-
- AnWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.analysis
-
This class inherits from the analysis wavelet filter definition for int
data.
- AnWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
- AnWTFilterSpec - Class in jj2000.j2k.wavelet.analysis
-
This class extends ModuleSpec class for analysis filters specification
holding purpose.
- AnWTFilterSpec(int, int, byte, QuantTypeSpec, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Constructs a new 'AnWTFilterSpec' for the specified number of
components and tiles.
- APERIO_IMAGE_DESCRIPTION_PREFIX - Static variable in class loci.formats.in.SVSReader
-
TIFF image description prefix for Aperio SVS files.
- APERTURE_VALUE - Static variable in class loci.formats.tiff.IFD
-
- APLReader - Class in loci.formats.in
-
APLReader is the file format reader for Olympus APL files.
- APLReader() - Constructor for class loci.formats.in.APLReader
-
Constructs a new APL reader.
- APNGReader - Class in loci.formats.in
-
APNGReader is the file format reader for
Animated Portable Network Graphics (APNG) images.
- APNGReader() - Constructor for class loci.formats.in.APNGReader
-
Constructs a new APNGReader.
- APNGWriter - Class in loci.formats.out
-
APNGWriter is the file format writer for PNG and APNG files.
- APNGWriter() - Constructor for class loci.formats.out.APNGWriter
-
- append(ILoggingEvent) - Method in class loci.plugins.util.IJStatusEchoer
-
- appendChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- appendServerMap(String, String) - Static method in class loci.formats.in.FlexReader
-
Add the path 'realName' to the mapping for the server named 'alias'.
- applicationData - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- applicationIDs - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- applyCalibration(ImagePlus) - Method in class loci.plugins.in.Calibrator
-
Applies spatial calibrations to an image stack.
- applyColors(List<ImagePlus>) - Method in class loci.plugins.in.Colorizer
-
- applyFont(int, int, short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Applies a font to the specified characters of a string.
- applyFont(int, int, HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Applies a font to the specified characters of a string.
- applyFont(HSSFFont) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Sets the font of the entire string.
- applyFont(short) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Applies the specified font to the entire string.
- applyMethodStack(List<RecordedImageProcessor.MethodEntry>) - Method in class loci.plugins.util.RecordedImageProcessor
-
- applyTable(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- arate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Actual decoding rate in bpp
- ArbROIMaskGenerator - Class in jj2000.j2k.roi.encoder
-
This class generates the ROI bit-mask when, at least, one ROI is not
rectangular.
- ArbROIMaskGenerator(ROI[], int, Quantizer) - Constructor for class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
The constructor of the arbitrary mask generator
- arbShape - Variable in class jj2000.j2k.roi.encoder.ROI
-
Where or not the ROI shape is arbitrary
- Arc - Class in ome.xml.model
-
- Arc() - Constructor for class ome.xml.model.Arc
-
Default constructor.
- Arc(Element, OMEModel) - Constructor for class ome.xml.model.Arc
-
Constructs Arc recursively from an XML DOM tree.
- Arc(Arc) - Constructor for class ome.xml.model.Arc
-
Copy constructor.
- ARCHIVE - Static variable in class loci.formats.in.FlexReader
-
- ArcType - Enum in ome.xml.model.enums
-
- ArcTypeEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for ArcType.
- ArcTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ArcTypeEnumHandler
-
- Area3DPtg - Class in loci.poi.hssf.record.formula
-
Title: Area 3D Ptg - 3D referecnce (Sheet + Area)
- Area3DPtg() - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
-
Creates new AreaPtg
- Area3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
-
- Area3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.Area3DPtg
-
- AreaAPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
-
- AreaAPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
-
- AreaAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaAPtg
-
- AreaErrPtg - Class in loci.poi.hssf.record.formula
-
AreaErr - handles deleted cell area references.
- AreaErrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaErrPtg
-
- AreaFormatRecord - Class in loci.poi.hssf.record
-
The area format record is used to define the colours and patterns for an area.
- AreaFormatRecord() - Constructor for class loci.poi.hssf.record.AreaFormatRecord
-
- AreaFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaFormatRecord
-
Constructs a AreaFormat record and sets its fields appropriately.
- AreaNAPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaNAPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
-
- AreaNAPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNAPtg
-
- AreaNPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaNPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
-
- AreaNPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNPtg
-
- AreaNVPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaNVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
-
- AreaNVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaNVPtg
-
- AreaPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaPtg() - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaPtg(String) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaPtg
-
- AreaRecord - Class in loci.poi.hssf.record
-
The area record is used to define a area chart.
- AreaRecord() - Constructor for class loci.poi.hssf.record.AreaRecord
-
- AreaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AreaRecord
-
Constructs a Area record and sets its fields appropriately.
- AreaReference - Class in loci.poi.hssf.util
-
- AreaReference(String) - Constructor for class loci.poi.hssf.util.AreaReference
-
Create an area ref from a string representation
- AreaVPtg - Class in loci.poi.hssf.record.formula
-
Specifies a rectangular area of cells A1:A4 for instance.
- AreaVPtg() - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
-
- AreaVPtg(short, short, short, short, boolean, boolean, boolean, boolean) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
-
- AreaVPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AreaVPtg
-
- ARFReader - Class in loci.formats.in
-
ARFReader is the file format reader for Axon Raw Format (ARF) files,
produced by INDEC BioSystems's
Imaging Workbench
software.
- ARFReader() - Constructor for class loci.formats.in.ARFReader
-
Constructs a new ARF reader.
- arg - Variable in class loci.plugins.LociExporter
-
Argument passed to setup method.
- args - Static variable in class loci.plugins.shortcut.ShortcutPanel
-
Details for installed plugins.
- arraycopy(byte[], int, byte[], int, int) - Static method in class loci.poi.util.ArrayUtil
-
This is really a debugging version of System.arraycopy()
.
- arrayMoveWithin(Object[], int, int, int) - Static method in class loci.poi.util.ArrayUtil
-
Moves a number of entries in an array to another point in the array,
shifting those inbetween as required.
- ArrayPtg - Class in loci.poi.hssf.record.formula
-
ArrayPtg - handles arrays
The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only
includes the Ptg sid and the reserved bytes.
- ArrayPtg() - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
-
- ArrayPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtg
-
- ArrayPtgA - Class in loci.poi.hssf.record.formula
-
ArrayPtgA - handles arrays
- ArrayPtgA() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
-
- ArrayPtgA(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgA
-
- ArrayPtgV - Class in loci.poi.hssf.record.formula
-
ArrayPtg - handles arrays
The ArrayPtg is a little wierd, the size of the Ptg when parsing initially only
includes the Ptg sid and the reserved bytes.
- ArrayPtgV() - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
-
- ArrayPtgV(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ArrayPtgV
-
- ArrayUtil - Class in jj2000.j2k.util
-
This class contains a colleaction of utility static methods for arrays.
- ArrayUtil() - Constructor for class jj2000.j2k.util.ArrayUtil
-
- ArrayUtil - Class in loci.poi.util
-
Utility classes for dealing with arrays.
- ArrayUtil() - Constructor for class loci.poi.util.ArrayUtil
-
- ARTIST - Static variable in class loci.formats.tiff.IFD
-
- ascii - Variable in class loci.formats.tools.AmiraParameters
-
- AsciiImage - Class in loci.formats.tools
-
A utility class for outputting a BufferedImage as ASCII text.
- AsciiImage(BufferedImage) - Constructor for class loci.formats.tools.AsciiImage
-
- asDateTime(DateTimeZone) - Method in class ome.xml.model.primitives.Timestamp
-
Returns the timestamp as a Joda DateTime
type.
- asInstant() - Method in class ome.xml.model.primitives.Timestamp
-
Returns the timestamp as a Joda DateTime
type.
- asRetrieve(MetadataStore) - Method in interface loci.formats.services.OMEXMLService
-
- asRetrieve(MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- assertId(String, boolean, int) - Static method in class loci.formats.FormatTools
-
Asserts that the current file is either null, or not, according to the
given flag.
- assoicateShapeToObjRecord(EscherRecord, Record) - Method in class loci.poi.hssf.record.EscherAggregate
-
Associates an escher record to an OBJ record or a TXO record.
- asStore(MetadataRetrieve) - Method in interface loci.formats.services.OMEXMLService
-
- asStore(MetadataRetrieve) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- ASTRONOMY_DOMAIN - Static variable in class loci.formats.FormatTools
-
Identifies the astronomy domain.
- asXMLElement(Document) - Method in class ome.xml.model.AbstractOMEModelObject
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.AbstractOMEModelObject
-
Takes the entire object hierarchy and produced an XML DOM tree taking
into account class hierarchy.
- asXMLElement(Document) - Method in class ome.xml.model.AffineTransform
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.AffineTransform
-
- asXMLElement(Document) - Method in class ome.xml.model.Annotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Annotation
-
- asXMLElement(Document) - Method in class ome.xml.model.AnnotationRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.AnnotationRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Arc
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Arc
-
- asXMLElement(Document) - Method in class ome.xml.model.BasicAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BasicAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.BinaryFile
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryFile
-
- asXMLElement(Document) - Method in class ome.xml.model.BinaryOnly
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BinaryOnly
-
- asXMLElement(Document) - Method in class ome.xml.model.BinData
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BinData
-
- asXMLElement(Document) - Method in class ome.xml.model.BooleanAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.BooleanAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Channel
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Channel
-
- asXMLElement(Document) - Method in class ome.xml.model.ChannelRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ChannelRef
-
- asXMLElement(Document) - Method in class ome.xml.model.CommentAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.CommentAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Dataset
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Dataset
-
- asXMLElement(Document) - Method in class ome.xml.model.DatasetRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DatasetRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Detector
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Detector
-
- asXMLElement(Document) - Method in class ome.xml.model.DetectorSettings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DetectorSettings
-
- asXMLElement(Document) - Method in class ome.xml.model.Dichroic
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Dichroic
-
- asXMLElement(Document) - Method in class ome.xml.model.DichroicRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DichroicRef
-
- asXMLElement(Document) - Method in class ome.xml.model.DoubleAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.DoubleAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Ellipse
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Ellipse
-
- asXMLElement(Document) - Method in class ome.xml.model.EmissionFilterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.EmissionFilterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ExcitationFilterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExcitationFilterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Experiment
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Experiment
-
- asXMLElement(Document) - Method in class ome.xml.model.Experimenter
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Experimenter
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroup
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroup
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimenterGroupRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterGroupRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimenterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimenterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ExperimentRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ExperimentRef
-
- asXMLElement(Document) - Method in class ome.xml.model.External
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.External
-
- asXMLElement(Document) - Method in class ome.xml.model.Filament
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Filament
-
- asXMLElement(Document) - Method in class ome.xml.model.FileAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FileAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Filter
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Filter
-
- asXMLElement(Document) - Method in class ome.xml.model.FilterRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FilterRef
-
- asXMLElement(Document) - Method in class ome.xml.model.FilterSet
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSet
-
- asXMLElement(Document) - Method in class ome.xml.model.FilterSetRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.FilterSetRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Image
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Image
-
- asXMLElement(Document) - Method in class ome.xml.model.ImageRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ImageRef
-
- asXMLElement(Document) - Method in class ome.xml.model.ImagingEnvironment
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ImagingEnvironment
-
- asXMLElement(Document) - Method in class ome.xml.model.Instrument
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Instrument
-
- asXMLElement(Document) - Method in class ome.xml.model.InstrumentRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.InstrumentRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Label
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Label
-
- asXMLElement(Document) - Method in class ome.xml.model.Laser
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Laser
-
- asXMLElement(Document) - Method in class ome.xml.model.Leader
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Leader
-
- asXMLElement(Document) - Method in class ome.xml.model.LightEmittingDiode
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightEmittingDiode
-
- asXMLElement(Document) - Method in class ome.xml.model.LightPath
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightPath
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightSource
-
- asXMLElement(Document) - Method in class ome.xml.model.LightSourceSettings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LightSourceSettings
-
- asXMLElement(Document) - Method in class ome.xml.model.Line
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Line
-
- asXMLElement(Document) - Method in class ome.xml.model.ListAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ListAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.LongAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.LongAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.ManufacturerSpec
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ManufacturerSpec
-
- asXMLElement(Document) - Method in class ome.xml.model.Mask
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Mask
-
- asXMLElement(Document) - Method in class ome.xml.model.MetadataOnly
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.MetadataOnly
-
- asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulation
-
- asXMLElement(Document) - Method in class ome.xml.model.MicrobeamManipulationRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.MicrobeamManipulationRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Microscope
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Microscope
-
- asXMLElement(Document) - Method in class ome.xml.model.NumericAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.NumericAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Objective
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Objective
-
- asXMLElement(Document) - Method in class ome.xml.model.ObjectiveSettings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ObjectiveSettings
-
- asXMLElement(Document) - Method in class ome.xml.model.OME
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.OME
-
- asXMLElement(Document) - Method in interface ome.xml.model.OMEModelObject
-
Takes the entire object hierarchy and produces an XML DOM tree.
- asXMLElement(Document) - Method in class ome.xml.model.Pixels
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Pixels
-
- asXMLElement(Document) - Method in class ome.xml.model.Plane
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Plane
-
- asXMLElement(Document) - Method in class ome.xml.model.Plate
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Plate
-
- asXMLElement(Document) - Method in class ome.xml.model.PlateAcquisition
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.PlateAcquisition
-
- asXMLElement(Document) - Method in class ome.xml.model.PlateRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.PlateRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Point
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Point
-
- asXMLElement(Document) - Method in class ome.xml.model.Polygon
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Polygon
-
- asXMLElement(Document) - Method in class ome.xml.model.Polyline
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Polyline
-
- asXMLElement(Document) - Method in class ome.xml.model.Project
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Project
-
- asXMLElement(Document) - Method in class ome.xml.model.ProjectRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ProjectRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Pump
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Pump
-
- asXMLElement(Document) - Method in class ome.xml.model.Reagent
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Reagent
-
- asXMLElement(Document) - Method in class ome.xml.model.ReagentRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ReagentRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Rectangle
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Rectangle
-
- asXMLElement(Document) - Method in class ome.xml.model.Reference
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Reference
-
- asXMLElement(Document) - Method in class ome.xml.model.Rights
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Rights
-
- asXMLElement(Document) - Method in class ome.xml.model.ROI
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ROI
-
- asXMLElement(Document) - Method in class ome.xml.model.ROIRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.ROIRef
-
- asXMLElement(Document) - Method in class ome.xml.model.Screen
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Screen
-
- asXMLElement(Document) - Method in class ome.xml.model.Settings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Settings
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Shape
-
- asXMLElement(Document) - Method in class ome.xml.model.StageLabel
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.StageLabel
-
- asXMLElement(Document) - Method in class ome.xml.model.StructuredAnnotations
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.StructuredAnnotations
-
- asXMLElement(Document) - Method in class ome.xml.model.TagAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TagAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TermAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TermAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TextAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TextAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TiffData
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TiffData
-
- asXMLElement(Document) - Method in class ome.xml.model.TimestampAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TimestampAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.TransmittanceRange
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TransmittanceRange
-
- asXMLElement(Document) - Method in class ome.xml.model.TypeAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.TypeAnnotation
-
- asXMLElement(Document) - Method in class ome.xml.model.Union
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Union
-
- asXMLElement(Document) - Method in class ome.xml.model.UUID
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.UUID
-
- asXMLElement(Document) - Method in class ome.xml.model.Well
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.Well
-
- asXMLElement(Document) - Method in class ome.xml.model.WellSample
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.WellSample
-
- asXMLElement(Document) - Method in class ome.xml.model.WellSampleRef
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.WellSampleRef
-
- asXMLElement(Document) - Method in class ome.xml.model.XMLAnnotation
-
- asXMLElement(Document, Element) - Method in class ome.xml.model.XMLAnnotation
-
- ATTR_NAME - Static variable in class loci.poi.hssf.record.formula.AbstractFunctionPtg
-
- attrInfoMap - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- AttrPtg - Class in loci.poi.hssf.record.formula
-
"Special Attributes"
This seems to be a Misc Stuff and Junk record.
- AttrPtg() - Constructor for class loci.poi.hssf.record.formula.AttrPtg
-
- AttrPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.AttrPtg
-
- authenticationCodes - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- AUTOMATIC - Static variable in class loci.poi.hssf.record.CalcModeRecord
-
automatically calculate formulas (1)
- AUTOMATIC_EXCEPT_TABLES - Static variable in class loci.poi.hssf.record.CalcModeRecord
-
automatically calculate formulas except for tables (-1)
- autoscale(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Perform autoscaling on the given BufferedImage.
- autoscale(BufferedImage, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Perform autoscaling on the given BufferedImage;
map min to 0 and max to 255.
- autoscale(byte[], int, int, int, boolean) - Static method in class loci.formats.ImageTools
-
Perform autoscaling on the given byte array;
map min to 0 and max to 255.
- autoscaleBox - Variable in class loci.plugins.in.MainDialog
-
- autoSizeColumn(short) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
Adjusts the column width to fit the contents.
- autoThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
-
- autoUpdate - Variable in class loci.formats.cache.Cache
-
Whether the cache should automatically update when a parameter changes.
- available() - Method in class loci.common.NIOInputStream
-
- available() - Method in class loci.common.RandomAccessInputStream
-
- available() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
-
Returns the number of bytes that can be read (or skipped over)
from this input stream without blocking by the next caller of a
method for this input stream.
- available() - Method in class loci.poi.util.BlockingInputStream
-
- AVI_MAGIC_STRING - Static variable in class loci.formats.in.AVIReader
-
- AVIReader - Class in loci.formats.in
-
AVIReader is the file format reader for AVI files.
- AVIReader() - Constructor for class loci.formats.in.AVIReader
-
Constructs a new AVI reader.
- AVIWriter - Class in loci.formats.out
-
AVIWriter is the file format writer for AVI files.
- AVIWriter() - Constructor for class loci.formats.out.AVIWriter
-
- avoidUndeclaredNamespaces(String) - Static method in class loci.common.xml.XMLTools
-
Replaces NS:tag with NS_tag for undeclared namespaces
- AWTImageTools - Class in loci.formats.gui
-
A utility class with convenience methods for manipulating images
in
BufferedImage
form.
- ax - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The horizontal coordinate of the image origin in the canvas system, on
the reference grid.
- AXIS_TYPE_AXIS_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AXIS_TYPE_CATEGORY_OR_X_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
-
- AXIS_TYPE_MAIN - Static variable in class loci.poi.hssf.record.AxisParentRecord
-
- AXIS_TYPE_MAJOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AXIS_TYPE_MINOR_GRID_LINE - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AXIS_TYPE_SECONDARY - Static variable in class loci.poi.hssf.record.AxisParentRecord
-
- AXIS_TYPE_SERIES_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
-
- AXIS_TYPE_VALUE_AXIS - Static variable in class loci.poi.hssf.record.AxisRecord
-
- AXIS_TYPE_WALLS_OR_FLOOR - Static variable in class loci.poi.hssf.record.AxisLineFormatRecord
-
- AxisGuesser - Class in loci.formats
-
AxisGuesser guesses which blocks in a file pattern correspond to which
dimensional axes (Z, T or C), potentially recommending an adjustment in
dimension order within the files, depending on the confidence of each guess.
- AxisGuesser(FilePattern, String, int, int, int, boolean) - Constructor for class loci.formats.AxisGuesser
-
Guesses dimensional axis assignments corresponding to the given
file pattern, using the specified dimensional information from
within each file as a guide.
- AxisLineFormatRecord - Class in loci.poi.hssf.record
-
The axis line format record defines the axis type details.
- AxisLineFormatRecord() - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord
-
- AxisLineFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisLineFormatRecord
-
Constructs a AxisLineFormat record and sets its fields appropriately.
- AxisOptionsRecord - Class in loci.poi.hssf.record
-
The axis options record provides unit information and other various tidbits about the axis.
- AxisOptionsRecord() - Constructor for class loci.poi.hssf.record.AxisOptionsRecord
-
- AxisOptionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisOptionsRecord
-
Constructs a AxisOptions record and sets its fields appropriately.
- AxisParentRecord - Class in loci.poi.hssf.record
-
The axis size and location
NOTE: This source is automatically generated please do not modify this file.
- AxisParentRecord() - Constructor for class loci.poi.hssf.record.AxisParentRecord
-
- AxisParentRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisParentRecord
-
Constructs a AxisParent record and sets its fields appropriately.
- AxisRecord - Class in loci.poi.hssf.record
-
The axis record defines the type of an axis.
- AxisRecord() - Constructor for class loci.poi.hssf.record.AxisRecord
-
- AxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisRecord
-
Constructs a Axis record and sets its fields appropriately.
- axisTypes - Variable in class loci.formats.AxisGuesser
-
Guessed axis types.
- AxisUsedRecord - Class in loci.poi.hssf.record
-
The number of axes used on a chart.
- AxisUsedRecord() - Constructor for class loci.poi.hssf.record.AxisUsedRecord
-
- AxisUsedRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.AxisUsedRecord
-
Constructs a AxisUsed record and sets its fields appropriately.
- ay - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The vertical coordinate of the image origin in the canvas system, on
the reference grid.
- ba - Variable in class mdbtools.libmdb.Holder
-
- backend - Class in mdbtools.libmdb
-
- backend() - Constructor for class mdbtools.libmdb.backend
-
- backend_name - Variable in class mdbtools.libmdb.MdbFile
-
- backend_name - Variable in class mdbtools.libmdb.MdbHandle
-
- BACKGROUND_TABLE - Static variable in class loci.formats.in.LiFlimReader
-
- backgroundColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- BackupRecord - Class in loci.poi.hssf.record
-
Title: Backup Record
- BackupRecord() - Constructor for class loci.poi.hssf.record.BackupRecord
-
- BackupRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BackupRecord
-
Constructs a BackupRecord and sets its fields appropriately
- BACKWARD_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
-
- baos - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
-
The ByteArrayOutputStream to store header data.
- BarRecord - Class in loci.poi.hssf.record
-
The bar record is used to define a bar chart.
- BarRecord() - Constructor for class loci.poi.hssf.record.BarRecord
-
- BarRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BarRecord
-
Constructs a Bar record and sets its fields appropriately.
- Base64Codec - Class in loci.formats.codec
-
Implements encoding (compress) and decoding (decompress) methods
for Base64.
- Base64Codec() - Constructor for class loci.formats.codec.Base64Codec
-
- BaseCodec - Class in loci.formats.codec
-
BaseCodec contains default implementation and testing for classes
implementing the Codec interface, and acts as a base class for any
of the compression classes.
- BaseCodec() - Constructor for class loci.formats.codec.BaseCodec
-
- BaseHandler - Class in loci.common.xml
-
Top-level SAX handler.
- BaseHandler() - Constructor for class loci.common.xml.BaseHandler
-
- BaselineTIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
-
A class representing the set of tags found in the baseline TIFF
specification as well as some common additional tags.
- BaseMetadata - Interface in loci.formats.meta
-
- BaseMetadata - Interface in ome.xml.meta
-
A proxy capable of bidirectional communication of biological image data to
and from a particular storage medium.
- basename - Variable in class loci.formats.in.ZeissTIFFHandler.Plane
-
- BaseTiffReader - Class in loci.formats.in
-
BaseTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
- BaseTiffReader(String, String) - Constructor for class loci.formats.in.BaseTiffReader
-
Constructs a new BaseTiffReader.
- BaseTiffReader(String, String[]) - Constructor for class loci.formats.in.BaseTiffReader
-
Constructs a new BaseTiffReader.
- BaseZeissReader - Class in loci.formats.in
-
BaseZeissReader contains common functionality required by
readers for Zeiss AxioVision formats.
- BaseZeissReader(String, String) - Constructor for class loci.formats.in.BaseZeissReader
-
Constructs a new ZeissZVI reader.
- BaseZeissReader(String, String[]) - Constructor for class loci.formats.in.BaseZeissReader
-
Constructs a new ZeissZVI reader.
- BaseZeissReader.Context - Enum in loci.formats.in
-
- BaseZeissReader.Tag - Class in loci.formats.in
-
Content of a single tag from a Tags block.
- BaseZeissReader.Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
-
Constructor.
- BaseZeissReader.Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
-
Constructor.
- BasicAnnotation - Class in ome.xml.model
-
- BasicAnnotation() - Constructor for class ome.xml.model.BasicAnnotation
-
Default constructor.
- BasicAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BasicAnnotation
-
Constructs BasicAnnotation recursively from an XML DOM tree.
- BasicAnnotation(BasicAnnotation) - Constructor for class ome.xml.model.BasicAnnotation
-
Copy constructor.
- BATBlock - Class in loci.poi.poifs.storage
-
A block of block allocation table entries.
- BATManaged - Interface in loci.poi.poifs.filesystem
-
This interface defines behaviors for objects managed by the Block
Allocation Table (BAT).
- BDReader - Class in loci.formats.in
-
BDReader is the file format reader for BD Pathway datasets.
- BDReader() - Constructor for class loci.formats.in.BDReader
-
Constructs a new ScanR reader.
- BEBufferedRandomAccessFile - Class in jj2000.j2k.io
-
This class defines a Buffered Random Access File, where all I/O is
considered to be big-endian, and extends the
BufferedRandomAccessFile class.
- BEBufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- BEBufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- BEBufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- BEBufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Constructor.
- beforeRecordSerialize(int, short, EscherRecord) - Method in interface loci.poi.ddf.EscherSerializationListener
-
Fired before a given escher record is serialized.
- beforeRecordSerialize(int, short, EscherRecord) - Method in class loci.poi.ddf.NullEscherSerializationListener
-
- beginDecoding() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
This routine is called prior to a sequence of calls to the
decode
method, in order to allow any necessary
tables or other structures to be initialized based on metadata
values.
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
Invokes the superclass method and then sets instance variables on
the basis of the metadata set on this decompressor.
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
-
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
-
- beginDecoding() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- BeginRecord - Class in loci.poi.hssf.record
-
The begin record defines the start of a block of records for a (grpahing
data object.
- BeginRecord() - Constructor for class loci.poi.hssf.record.BeginRecord
-
- BeginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BeginRecord
-
Constructs a BeginRecord record and sets its fields appropriately.
- BETA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
The value of the second lifting step coefficient
- BETA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
The value of the second lifting step coefficient
- BF - Class in loci.plugins
-
Miscellaneous plugins utility methods.
- BFVirtualStack - Class in loci.plugins.util
-
Subclass of VirtualStack that uses Bio-Formats to read planes on demand.
- BFVirtualStack(String, IFormatReader, boolean, boolean, boolean) - Constructor for class loci.plugins.util.BFVirtualStack
-
- bgrToRgb(byte[], boolean, int, int) - Static method in class loci.formats.ImageTools
-
- BH_HEADER_CHKSUM - Static variable in class loci.formats.in.SDTInfo
-
- BH_HEADER_NOT_VALID - Static variable in class loci.formats.in.SDTInfo
-
- BH_HEADER_VALID - Static variable in class loci.formats.in.SDTInfo
-
- BI_BITFIELDS - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_JPEG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_PNG - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_RGB - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_RLE4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BI_RLE8 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- BiffViewer - Class in loci.poi.hssf.dev
-
Utillity for reading in BIFF8 records and displaying data from them.
- BiffViewer(String[]) - Constructor for class loci.poi.hssf.dev.BiffViewer
-
Creates new BiffViewer
- BIFormatReader - Class in loci.formats.in
-
BIFormatReader is the superclass for file format readers
that use java.awt.image.BufferedImage as the native data type.
- BIFormatReader(String, String) - Constructor for class loci.formats.in.BIFormatReader
-
Constructs a new BIFormatReader.
- BIFormatReader(String, String[]) - Constructor for class loci.formats.in.BIFormatReader
-
Constructs a new BIFormatReader.
- BIG - Static variable in class loci.formats.tiff.TiffConstants
-
- BIG_ENDIAN - Static variable in interface jj2000.j2k.io.EndianType
-
Identifier for big-endian byte ordering (i.e.
- BIG_SPOTS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- BIG_SPOTS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Large spots
- BIG_TIFF - Static variable in class loci.formats.tiff.IFD
-
- BIG_TIFF_BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants
-
The number of bytes in each IFD entry of a BigTIFF file.
- BIG_TIFF_MAGIC_NUMBER - Static variable in class loci.formats.tiff.TiffConstants
-
- BinaryDataInput - Interface in jj2000.j2k.io
-
This interface defines the input of binary data from streams and/or files.
- BinaryDataOutput - Interface in jj2000.j2k.io
-
This interface defines the output of binary data to streams and/or files.
- BinaryFile - Class in ome.xml.model
-
- BinaryFile() - Constructor for class ome.xml.model.BinaryFile
-
Default constructor.
- BinaryFile(Element, OMEModel) - Constructor for class ome.xml.model.BinaryFile
-
Constructs BinaryFile recursively from an XML DOM tree.
- BinaryFile(BinaryFile) - Constructor for class ome.xml.model.BinaryFile
-
Copy constructor.
- BinaryOnly - Class in ome.xml.model
-
- BinaryOnly() - Constructor for class ome.xml.model.BinaryOnly
-
Default constructor.
- BinaryOnly(Element, OMEModel) - Constructor for class ome.xml.model.BinaryOnly
-
Constructs BinaryOnly recursively from an XML DOM tree.
- BinaryOnly(BinaryOnly) - Constructor for class ome.xml.model.BinaryOnly
-
Copy constructor.
- BinaryTree - Class in loci.poi.util
-
Red-Black tree-based implementation of Map.
- BinaryTree() - Constructor for class loci.poi.util.BinaryTree
-
Construct a new BinaryTree
- BinaryTree(Map) - Constructor for class loci.poi.util.BinaryTree
-
Constructs a new BinaryTree from an existing Map, with keys and
values sorted
- bind_ptr - Variable in class mdbtools.libmdb.MdbColumn
-
- BinData - Class in ome.xml.model
-
- BinData() - Constructor for class ome.xml.model.BinData
-
Default constructor.
- BinData(Element, OMEModel) - Constructor for class ome.xml.model.BinData
-
Constructs BinData recursively from an XML DOM tree.
- BinData(BinData) - Constructor for class ome.xml.model.BinData
-
Copy constructor.
- Binning - Enum in ome.xml.model.enums
-
- BinningEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for Binning.
- BinningEnumHandler() - Constructor for class ome.xml.model.enums.handlers.BinningEnumHandler
-
- BioFormatsExtensionPrinter - Class in loci.formats.tools
-
This class is used to generate a text file containing all of the
image file extensions supported by Bio-Formats.
- BioFormatsExtensionPrinter() - Constructor for class loci.formats.tools.BioFormatsExtensionPrinter
-
- BioRadGelReader - Class in loci.formats.in
-
BioRadGelReader is the file format reader for Bio-Rad gel files.
- BioRadGelReader() - Constructor for class loci.formats.in.BioRadGelReader
-
Constructs a new Bio-Rad gel reader.
- BioRadReader - Class in loci.formats.in
-
BioRadReader is the file format reader for Bio-Rad PIC files.
- BioRadReader() - Constructor for class loci.formats.in.BioRadReader
-
Constructs a new BioRadReader.
- BioRadSCNReader - Class in loci.formats.in
-
BioRadSCNReader is the reader for Bio-Rad .scn files
Source code:
Trac,
Gitweb
- BioRadSCNReader() - Constructor for class loci.formats.in.BioRadSCNReader
-
Constructs a new Bio-Rad .scn reader.
- BitBuffer - Class in loci.formats.codec
-
A class for reading arbitrary numbers of bits from a byte array.
- BitBuffer(byte[]) - Constructor for class loci.formats.codec.BitBuffer
-
Default constructor.
- BitField - Class in loci.poi.util
-
Manage operations dealing with bit-mapped fields.
- BitField(int) - Constructor for class loci.poi.util.BitField
-
Create a BitField instance
- BitFieldFactory - Class in loci.poi.util
-
Returns immutable Btfield instances.
- BitFieldFactory() - Constructor for class loci.poi.util.BitFieldFactory
-
- BitFile - Class in com.sun.media.imageioimpl.common
-
Came from GIFEncoder initially.
- BitFile(ImageOutputStream, boolean) - Constructor for class com.sun.media.imageioimpl.common.BitFile
-
- BitOutputBuffer - Class in jj2000.j2k.codestream.writer
-
This class implements a buffer for writing bits, with the required bit
stuffing policy for the packet headers.
- BitOutputBuffer() - Constructor for class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Creates a new BitOutputBuffer width a buffer of length
'SZ_INIT'.
- bits - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Output bit buffer.
- BITS_PER_COMPONENT_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- BITS_PER_SAMPLE - Static variable in class loci.formats.tiff.IFD
-
- BitsPerComponentBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Bits Per Component Box of JPEG
JP2 file format.
- BitsPerComponentBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
-
Counstructs a BitsPerComponentBox
from the provided
byte array containing the bit depths of each color component.
- BitsPerComponentBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.BitsPerComponentBox
-
Constructs a BitsPerComponentBox
based on the provide
org.w3c.dom.Node
.
- bitsPerPixel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- bitsPerPixel - Variable in class loci.formats.CoreMetadata
-
Number of valid bits per pixel.
- bitsPerSample - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the BitsPerSample
tag.
- bitsPerSample - Variable in class loci.formats.codec.CodecOptions
-
Number of bits per channel.
- BitstreamReaderAgent - Class in jj2000.j2k.codestream.reader
-
This is the generic interface for bit stream reader agents.
- BitstreamReaderAgent(HeaderDecoder, DecoderSpecs) - Constructor for class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Initializes members of this class.
- BitWriter - Class in loci.formats.codec
-
A class for writing arbitrary numbers of bits to a byte array.
- BitWriter() - Constructor for class loci.formats.codec.BitWriter
-
Constructs a new bit writer.
- BitWriter(int) - Constructor for class loci.formats.codec.BitWriter
-
Constructs a new bit writer with the given initial buffer size.
- BLACK - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
The CCITT numerical definition of black.
- blankImage(int, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Creates a blank image with the given dimensions and transfer type.
- BlankRecord - Class in loci.poi.hssf.record
-
Title: Blank cell record
- BlankRecord() - Constructor for class loci.poi.hssf.record.BlankRecord
-
Creates a new instance of BlankRecord
- BlankRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BlankRecord
-
Constructs a BlankRecord and sets its fields appropriately
- BLIP__BLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__BLIPFLAGS - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__BLIPTODISPLAY - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__BRIGHTNESSSETTING - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CONTRASTSETTING - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMBOTTOM - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMLEFT - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMRIGHT - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__CROPFROMTOP - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__DOUBLEMOD - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__GAMMA - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__NOHITTESTPICTURE - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREACTIVE - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREBILEVEL - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREFILLMOD - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREGRAY - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTUREID - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PICTURELINE - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PRINTBLIP - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PRINTBLIPFILENAME - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__PRINTFLAGS - Static variable in class loci.poi.ddf.EscherProperties
-
- BLIP__TRANSPARENTCOLOR - Static variable in class loci.poi.ddf.EscherProperties
-
- BlkImgDataSrc - Interface in jj2000.j2k.image
-
This interface defines the methods to transfer image data in blocks,
without following any particular order (random access).
- BLOCK_END - Static variable in class loci.formats.FilePatternBlock
-
- BLOCK_SIZE - Static variable in class loci.poi.hssf.record.DBCellRecord
-
- BLOCK_START - Static variable in class loci.formats.FilePatternBlock
-
- BlockAllocationTableReader - Class in loci.poi.poifs.storage
-
This class manages and creates the Block Allocation Table, which is
basically a set of linked lists of block indices.
- BlockAllocationTableReader(int, int[], int, int, BlockList, int) - Constructor for class loci.poi.poifs.storage.BlockAllocationTableReader
-
create a BlockAllocationTableReader for an existing filesystem.
- BlockAllocationTableWriter - Class in loci.poi.poifs.storage
-
This class manages and creates the Block Allocation Table, which is
basically a set of linked lists of block indices.
- BlockAllocationTableWriter() - Constructor for class loci.poi.poifs.storage.BlockAllocationTableWriter
-
create a BlockAllocationTableWriter
- BlockingInputStream - Class in loci.poi.util
-
Implementation of a BlockingInputStream to provide data to
RawDataBlock that expects data in 512 byte chunks.
- BlockingInputStream(InputStream) - Constructor for class loci.poi.util.BlockingInputStream
-
- blockLength - Variable in class loci.formats.in.SDTInfo
-
reserved2 now contains block (set) length.
- BlockList - Interface in loci.poi.poifs.storage
-
Interface for lists of blocks that are mapped by block allocation
tables
- blockNo - Variable in class loci.formats.in.SDTInfo
-
Number of the block in the file.
- blockType - Variable in class loci.formats.in.SDTInfo
-
See blockType defines below.
- BlockWritable - Interface in loci.poi.poifs.storage
-
An interface for persisting block storage of POIFS components.
- blue - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- blue - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blueMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blueX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blueY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- blueZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- BMP_MAGIC_STRING - Static variable in class loci.formats.in.BMPReader
-
- BMPConstants - Interface in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageReader - Class in com.sun.media.imageioimpl.plugins.bmp
-
This class is the Java Image IO plugin reader for BMP images.
- BMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
Constructs BMPImageReader
from the provided
ImageReaderSpi
.
- BMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- BMPImageWriteParam - Class in com.sun.media.imageio.plugins.bmp
-
A subclass of ImageWriteParam
for encoding images in
the BMP format.
- BMPImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Constructs a BMPImageWriteParam
set to use a given
Locale
and with default values for all parameters.
- BMPImageWriteParam() - Constructor for class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Constructs an BMPImageWriteParam
object with default
values for all parameters and a null
Locale
.
- BMPImageWriter - Class in com.sun.media.imageioimpl.plugins.bmp
-
The Java Image IO plugin writer for encoding a binary RenderedImage into
a BMP format.
- BMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
Constructs BMPImageWriter
based on the provided
ImageWriterSpi
.
- BMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- BMPMetadata - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- BMPMetadata(IIOMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- BMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.bmp
-
- BMPMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormatResources
-
- BMPReader - Class in loci.formats.in
-
BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
- BMPReader() - Constructor for class loci.formats.in.BMPReader
-
Constructs a new BMP reader.
- bmpVersion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- bms - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
By-pass mode specifications
- BOFRecord - Class in loci.poi.hssf.record
-
Title: Beginning Of File
- BOFRecord() - Constructor for class loci.poi.hssf.record.BOFRecord
-
Constructs an empty BOFRecord with no fields set.
- BOFRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BOFRecord
-
Constructs a BOFRecord and sets its fields appropriately
- BogusColorSpace - Class in com.sun.media.imageioimpl.common
-
A dummy ColorSpace
to enable ColorModel
for image data which do not have an innate color representation.
- BogusColorSpace(int) - Constructor for class com.sun.media.imageioimpl.common.BogusColorSpace
-
Constructs a bogus ColorSpace
.
- BOLDWEIGHT_BOLD - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
Bold boldness (bold)
- BOLDWEIGHT_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
Normal boldness (not bold)
- book - Variable in class loci.poi.hssf.usermodel.HSSFSheet
-
- BookBoolRecord - Class in loci.poi.hssf.record
-
Title: Save External Links record (BookBool)
- BookBoolRecord() - Constructor for class loci.poi.hssf.record.BookBoolRecord
-
- BookBoolRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BookBoolRecord
-
Constructs a BookBoolRecord and sets its fields appropriately
- BooleanAnnotation - Class in ome.xml.model
-
- BooleanAnnotation() - Constructor for class ome.xml.model.BooleanAnnotation
-
Default constructor.
- BooleanAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.BooleanAnnotation
-
Constructs BooleanAnnotation recursively from an XML DOM tree.
- BooleanAnnotation(BooleanAnnotation) - Constructor for class ome.xml.model.BooleanAnnotation
-
Copy constructor.
- BooleanOption - Class in loci.plugins.prefs
-
A boolean option for one of the plugins.
- BooleanOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.BooleanOption
-
Constructs a boolean option with the parameters from the given map.
- BooleanOption(String, boolean, String, String, boolean) - Constructor for class loci.plugins.prefs.BooleanOption
-
Constructs a boolean option with the given parameters.
- BoolErrRecord - Class in loci.poi.hssf.record
-
Creates new BoolErrRecord.
- BoolErrRecord() - Constructor for class loci.poi.hssf.record.BoolErrRecord
-
Creates new BoolErrRecord
- BoolErrRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoolErrRecord
-
Constructs a BoolErr record and sets its fields appropriately.
- BoolPtg - Class in loci.poi.hssf.record.formula
-
Boolean (boolean)
Stores a (java) boolean value in a formula.
- BoolPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
-
- BoolPtg(String) - Constructor for class loci.poi.hssf.record.formula.BoolPtg
-
- BORDER - Static variable in class loci.plugins.shortcut.ShortcutPanel
-
Number of pixels for window border.
- BORDER_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dash-dot border
- BORDER_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dash-dot-dot border
- BORDER_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dash border
- BORDER_DOTTED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
hair-line border
- BORDER_DOUBLE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
double-line border
- BORDER_HAIR - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
dot border
- BORDER_MEDIUM - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Medium border
- BORDER_MEDIUM_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
medium dash-dot border
- BORDER_MEDIUM_DASH_DOT_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
medium dash-dot-dot border
- BORDER_MEDIUM_DASHED - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Medium dashed border
- BORDER_NONE - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
No border
- BORDER_SLANTED_DASH_DOT - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
slanted dash-dot border
- BORDER_THICK - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Thick border
- BORDER_THIN - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Thin border
- BORDER_TYPE_REGULAR - Static variable in class loci.poi.hssf.record.FrameRecord
-
- BORDER_TYPE_SHADOW - Static variable in class loci.poi.hssf.record.FrameRecord
-
- bordL - Variable in class loci.formats.in.SDTInfo
-
- bordU - Variable in class loci.formats.in.SDTInfo
-
- BottomMargin - Static variable in class loci.poi.hssf.model.Sheet
-
- BottomMargin - Static variable in class loci.poi.hssf.usermodel.HSSFSheet
-
- BottomMarginRecord - Class in loci.poi.hssf.record
-
Record for the bottom margin.
- BottomMarginRecord() - Constructor for class loci.poi.hssf.record.BottomMarginRecord
-
- BottomMarginRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BottomMarginRecord
-
Constructs a BottomMargin record and sets its fields appropriately.
- BoundSheetRecord - Class in loci.poi.hssf.record
-
Title: Bound Sheet Record (aka BundleSheet)
- BoundSheetRecord() - Constructor for class loci.poi.hssf.record.BoundSheetRecord
-
- BoundSheetRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.BoundSheetRecord
-
Constructs a BoundSheetRecord and sets its fields appropriately
- boundsheets - Variable in class loci.poi.hssf.model.Workbook
-
holds the "boundsheet" records (aka bundlesheet) so that they can have their
reference to their "BOF" marker
- Box - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to create the box of JP2 file format.
- Box(int, int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box
instance using the provided
the box type and the box content in byte array format.
- Box(int, int, long, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box
instance using the provided
the box type, the box extra length, and the box content in byte
array format.
- Box(ImageInputStream, int) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box
instance from the provided
ImageInputStream
at the specified position.
- Box(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Constructs a Box from an "unknown" Node.
- BOX_SIZE - Static variable in class loci.formats.in.FakeReader
-
- bpp - Variable in class loci.formats.in.BaseZeissReader
-
Number of bytes per pixel.
- BRICKS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- BRICKS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Brick-like layout
- BRIGHTNESS_VALUE - Static variable in class loci.formats.tiff.IFD
-
- BrowserOptionsWindow - Class in loci.plugins.util
-
Extension of JFrame that allows the user to adjust caching settings.
- BrowserOptionsWindow(String, Cache, String[]) - Constructor for class loci.plugins.util.BrowserOptionsWindow
-
- BrukerReader - Class in loci.formats.in
-
BrukerReader is the file format reader for Bruker MRI files.
- BrukerReader() - Constructor for class loci.formats.in.BrukerReader
-
Constructs a new Bruker reader.
- BSTORE_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
-
- BT_DIB - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_EMF - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_ERROR - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_JPEG - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_PICT - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_PNG - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_UNKNOWN - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BT_WMF - Static variable in class loci.poi.ddf.EscherBSERecord
-
- BUBBLE_SERIES_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- BUBBLE_SERIES_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- BUBBLE_SERIES_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- BUBBLE_SERIES_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- BUF_DEF_LEN - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
The default initial buffer size
- BUF_INC - Static variable in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
The buffer increase size
- buffer - Variable in class loci.common.ByteArrayHandle
-
Backing ByteBuffer.
- buffer - Variable in class loci.common.NIOFileHandle
-
The buffer itself.
- BufferedImageReader - Class in loci.formats.gui
-
A reader wrapper for reading image planes as BufferedImage objects.
- BufferedImageReader() - Constructor for class loci.formats.gui.BufferedImageReader
-
Constructs a BufferedImageReader around a new image reader.
- BufferedImageReader(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageReader
-
Constructs a BufferedImageReader with the given reader.
- BufferedImageSource - Class in loci.formats.gui
-
Retrieves BufferedImages from a data source using Bio-Formats.
- BufferedImageSource(IFormatReader) - Constructor for class loci.formats.gui.BufferedImageSource
-
- BufferedImageWriter - Class in loci.formats.gui
-
A writer wrapper for writing image planes from BufferedImage objects.
- BufferedImageWriter() - Constructor for class loci.formats.gui.BufferedImageWriter
-
Constructs a BufferedImageWriter around a new image writer.
- BufferedImageWriter(IFormatWriter) - Constructor for class loci.formats.gui.BufferedImageWriter
-
Constructs a BufferedImageWriter with the given writer.
- BufferedRandomAccessFile - Class in jj2000.j2k.io
-
This class defines a Buffered Random Access File.
- BufferedRandomAccessFile(File, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- BufferedRandomAccessFile(File, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- BufferedRandomAccessFile(String, String, int) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- BufferedRandomAccessFile(String, String) - Constructor for class jj2000.j2k.io.BufferedRandomAccessFile
-
Constructor.
- bufferSize - Variable in class loci.common.NIOFileHandle
-
The buffer size.
- bufferStartPosition - Variable in class loci.common.NIOFileHandle
-
The absolute position of the start of the buffer.
- bugaddr - Static variable in class jj2000.j2k.JJ2KInfo
-
The bug reporting e-mail address
- BUILD - Static variable in class loci.poi.hssf.record.BOFRecord
-
suggested default 0x10d3
- BUILD_YEAR - Static variable in class loci.poi.hssf.record.BOFRecord
-
suggested default 0x07CC (1996)
- buildExtensions() - Method in class loci.plugins.macro.MacroFunctions
-
Builds the list of extensions, using reflection,
from public methods of this class.
- buildFileChooser(IFormatHandler) - Static method in class loci.formats.gui.GUITools
-
Constructs a file chooser for the given file format handler.
- buildFileChooser(IFormatHandler, boolean) - Static method in class loci.formats.gui.GUITools
-
Constructs a file chooser for the given file format handler.
- buildFileChooser(FileFilter[]) - Static method in class loci.formats.gui.GUITools
-
Builds a file chooser with the given file filters,
as well as an "All supported file types" combo filter.
- buildFileChooser(FileFilter[], boolean) - Static method in class loci.formats.gui.GUITools
-
Builds a file chooser with the given file filters, as well as an "All
supported file types" combo filter, if one is not already specified.
- buildFileFilters(IFormatHandler) - Static method in class loci.formats.gui.GUITools
-
Constructs a list of file filters for the given file format handler.
- buildFontCharactersProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
-
- buildFontHeightProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
-
- buildFontWidthsProperty(String) - Static method in class loci.poi.hssf.usermodel.FontDetails
-
- buildFunction(Function, Object) - Method in class mdbtools.dbengine.Tests
-
- buildFunction(Aggregate, Object) - Method in class mdbtools.dbengine.Tests
-
- buildPalette() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- BUILTIN_AUTO_ACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_AUTO_CLOSE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_AUTO_DEACTIVATE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_AUTO_OPEN - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_CONSOLIDATE_AREA - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_CRITERIA - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_DATA_FORM - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_DATABASE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_PRINT_AREA - Static variable in class loci.poi.hssf.record.NameRecord
-
- BUILTIN_PRINT_TITLE - Static variable in class loci.poi.hssf.record.NameRecord
-
- BUILTIN_RECORDER - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BUILTIN_SHEET_TITLE - Static variable in class loci.poi.hssf.record.NameRecord
-
Included for completeness sake, not implemented
- BurleighReader - Class in loci.formats.in
-
BurleighReader is the file format reader for Burleigh .img files.
- BurleighReader() - Constructor for class loci.formats.in.BurleighReader
-
Constructs a new Burleigh reader.
- BYTE_SIZE - Static variable in interface loci.poi.util.LittleEndianConsts
-
- ByteArrayHandle - Class in loci.common
-
A wrapper for a byte array that implements the IRandomAccess interface.
- ByteArrayHandle(byte[]) - Constructor for class loci.common.ByteArrayHandle
-
Creates a random access byte stream to read from, and
write to, the bytes specified by the byte[] argument.
- ByteArrayHandle(ByteBuffer) - Constructor for class loci.common.ByteArrayHandle
-
- ByteArrayHandle(int) - Constructor for class loci.common.ByteArrayHandle
-
Creates a random access byte stream to read from, and write to.
- ByteArrayHandle() - Constructor for class loci.common.ByteArrayHandle
-
Creates a random access byte stream to write to a byte array.
- byteArraySet(byte[], byte) - Static method in class jj2000.j2k.util.ArrayUtil
-
Reinitializes a byte array to the given value in an optimized way.
- ByteArraySource - Class in loci.formats.cache
-
Retrieves byte arrays from a data source
(e.g., a file) using Bio-Formats.
- ByteArraySource(IFormatReader) - Constructor for class loci.formats.cache.ByteArraySource
-
Constructs a byte array source from the given Bio-Formats reader.
- ByteArraySource(String) - Constructor for class loci.formats.cache.ByteArraySource
-
Constructs a byte array source that draws from the given file.
- byteBuffer - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
Buffer of bytes containing the part of the file that is currently being
accessed
- byteBufferChanged - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
Boolean keeping track of whether the byte buffer has been changed since
it was read.
- byteBufferProvider - Variable in class loci.common.NIOFileHandle
-
Provider class for NIO byte buffers, allocated or memory mapped.
- byteCount - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The number of bytes of data from the source
ImageInputStream
to be decompressed.
- ByteField - Class in loci.poi.util
-
representation of a byte (8-bit) field at a fixed location within a
byte array
- ByteField(int) - Constructor for class loci.poi.util.ByteField
-
construct the ByteField with its offset into its containing
byte array and a default value of 0
- ByteField(int, byte) - Constructor for class loci.poi.util.ByteField
-
construct the ByteField with its offset into its containing
byte array and initialize its value
- ByteField(int, byte[]) - Constructor for class loci.poi.util.ByteField
-
Construct the ByteField with its offset into its containing
byte array and initialize its value from its byte array
- ByteField(int, byte, byte[]) - Constructor for class loci.poi.util.ByteField
-
construct the ByteField with its offset into its containing
byte array, initialize its value, and write its value to its
byte array
- ByteInputBuffer - Class in jj2000.j2k.entropy.decoder
-
This class provides a byte input facility from byte buffers.
- ByteInputBuffer(byte[]) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Creates a new byte array input stream that reads data from the
specified byte array.
- ByteInputBuffer(byte[], int, int) - Constructor for class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Creates a new byte array input stream that reads data from the
specified byte array.
- byteOrder - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
-
- byteOrder - Variable in class loci.poi.hpsf.PropertySet
-
- byteOrdering - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
- ByteOutputBuffer - Class in jj2000.j2k.entropy.encoder
-
This class provides a buffering output stream similar to
ByteArrayOutputStream, with some additional methods.
- ByteOutputBuffer() - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Creates a new byte array output stream.
- ByteOutputBuffer(int) - Constructor for class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Creates a new byte array output stream, with a buffer capacity
of the specified size, in bytes.
- bytes - Variable in class loci.formats.tiff.TiffSaver
-
Output bytes.
- bytes - Variable in class loci.poi.hpsf.ClassID
-
The bytes making out the class ID in correct order,
i.e.
- BYTES_PER_ENTRY - Static variable in class loci.formats.tiff.TiffConstants
-
The number of bytes in each IFD entry.
- bytesToDouble(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a double.
- bytesToDouble(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a double.
- bytesToDouble(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a double.
- bytesToFloat(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a float.
- bytesToFloat(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond a given
offset to a float.
- bytesToFloat(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to a float.
- bytesToFloat(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond a given
offset to a float.
- bytesToFloat(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond a given
offset to a float.
- bytesToFloat(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to a float.
- bytesToHex(byte[]) - Static method in class loci.common.DataTools
-
Translates the given byte array into a String of hexadecimal digits.
- bytesToInt(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to an int.
- bytesToInt(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond the given
offset to an int.
- bytesToInt(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to an int.
- bytesToInt(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to an int.
- bytesToInt(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array beyond the given
offset to an int.
- bytesToInt(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 4 bytes of a byte array to an int.
- bytesToLong(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a long.
- bytesToLong(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a long.
- bytesToLong(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a long.
- bytesToLong(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a long.
- bytesToLong(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array beyond the given
offset to a long.
- bytesToLong(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 8 bytes of a byte array to a long.
- bytesToShort(byte[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array beyond the given
offset to a short.
- bytesToShort(byte[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array beyond the given
offset to a short.
- bytesToShort(byte[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array to a short.
- bytesToShort(short[], int, int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first len bytes of a byte array byond the given
offset to a short.
- bytesToShort(short[], int, boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array byond the given
offset to a short.
- bytesToShort(short[], boolean) - Static method in class loci.common.DataTools
-
Translates up to the first 2 bytes of a byte array to a short.
- byteTable - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
- byteValue() - Method in class loci.formats.tiff.TiffRational
-
Returns the value of the specified number as a byte.
- ByteVector - Class in loci.formats.codec
-
A growable array of bytes.
- ByteVector() - Constructor for class loci.formats.codec.ByteVector
-
- ByteVector(int) - Constructor for class loci.formats.codec.ByteVector
-
- ByteVector(byte[]) - Constructor for class loci.formats.codec.ByteVector
-
- BZip2Handle - Class in loci.common
-
StreamHandle implementation for reading from BZip2-compressed files
or byte arrays.
- BZip2Handle(String) - Constructor for class loci.common.BZip2Handle
-
Construct a new BZip2Handle corresponding to the given file.
- C - Static variable in class loci.formats.AxisGuesser
-
Prefix endings indicating channel dimension.
- c - Variable in class loci.formats.tools.AmiraParameters
-
- C01_MAGIC_BYTES - Static variable in class loci.formats.in.CellomicsReader
-
- C_AXIS - Static variable in class loci.formats.AxisGuesser
-
Axis type for channels.
- C_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- C_STRING - Static variable in class loci.formats.in.SDTInfo
-
- Cache - Class in loci.formats.cache
-
Cache provides a means of managing subsets of large collections of image
planes in memory.
- Cache(ICacheStrategy, ICacheSource, boolean) - Constructor for class loci.formats.cache.Cache
-
Constructs an object cache with the given cache strategy and source.
- cache - Variable in class loci.formats.cache.Cache
-
Master array containing cached objects.
- cache - Variable in class loci.plugins.util.BFVirtualStack
-
- CacheComponent - Class in loci.formats.gui
-
GUI component for managing a cache.
- CacheComponent(Cache, String[]) - Constructor for class loci.formats.gui.CacheComponent
-
Creates a cache GUI component.
- CacheComponent(Cache, String[], String) - Constructor for class loci.formats.gui.CacheComponent
-
Creates a cache GUI component with the ability to change between the
various source types (mainly for debugging purposes).
- CacheConsole - Class in loci.formats.tools
-
CacheConsole provides an interactive interpreter for
testing the Bio-Formats caching implementation.
- cacheDirectoryListings(boolean) - Static method in class loci.common.Location
-
Turn cacheing of directory listings on or off.
- CacheEvent - Class in loci.formats.cache
-
A event indicating a cache update.
- CacheEvent(Object, int) - Constructor for class loci.formats.cache.CacheEvent
-
Constructs a cache event.
- CacheEvent(Object, int, int) - Constructor for class loci.formats.cache.CacheEvent
-
Constructs a cache event.
- CacheException - Exception in loci.formats.cache
-
CacheException is the exception thrown when something
goes wrong performing a cache operation.
- CacheException() - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(String) - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(String, Throwable) - Constructor for exception loci.formats.cache.CacheException
-
- CacheException(Throwable) - Constructor for exception loci.formats.cache.CacheException
-
- CacheIndicator - Class in loci.formats.gui
-
Indicator GUI component showing which planes are currently in the cache
for a given dimensional axis at a particular dimensional position.
- CacheIndicator(Cache, int) - Constructor for class loci.formats.gui.CacheIndicator
-
Creates a new cache indicator for the given cache.
- CacheIndicator(Cache, int, Component, int, int) - Constructor for class loci.formats.gui.CacheIndicator
-
Creates a new cache indicator.
- CacheListener - Interface in loci.formats.cache
-
A listener for cache updates.
- CacheReporter - Interface in loci.formats.cache
-
Interface for components capable of reporting cache updates.
- CacheSource - Class in loci.formats.cache
-
Superclass of cache sources that retrieve image planes
from a data source (e.g., a file) using Bio-Formats.
- CacheSource(IFormatReader) - Constructor for class loci.formats.cache.CacheSource
-
Constructs a cache source from the given Bio-Formats reader.
- CacheSource(String) - Constructor for class loci.formats.cache.CacheSource
-
Constructs a cache source that draws from the given file.
- CacheStrategy - Class in loci.formats.cache
-
Superclass of cache strategies.
- CacheStrategy(int[]) - Constructor for class loci.formats.cache.CacheStrategy
-
Constructs a cache strategy.
- cacheUpdated(CacheEvent) - Method in interface loci.formats.cache.CacheListener
-
Called when cache is updated.
- cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheComponent
-
Updates GUI to match latest cache state.
- cacheUpdated(CacheEvent) - Method in class loci.formats.gui.CacheIndicator
-
- CacheUpdater - Class in loci.formats.cache
-
Thread responsible for updating the cache
(loading and dropping planes) in the background.
- CacheUpdater(Cache) - Constructor for class loci.formats.cache.CacheUpdater
-
- CalcCountRecord - Class in loci.poi.hssf.record
-
Title: Calc Count Record
Description: Specifies the maximum times the gui should perform a formula
recalculation.
- CalcCountRecord() - Constructor for class loci.poi.hssf.record.CalcCountRecord
-
- CalcCountRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcCountRecord
-
Constructs a CalcCountRecord and sets its fields appropriately
- calcExtSSTRecordSize() - Method in class loci.poi.hssf.record.SSTRecord
-
Calculates the size in bytes of the EXTSST record as it would be if the
record was serialized.
- calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Calculates the bitdepths of the transformed components, given the
bitdepth of the un-transformed components and the component
tranformation type.
- calcMixedBitDepths(int[], int, int[]) - Static method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Calculates the bitdepths of the transformed components, given the
bitdepth of the un-transformed components and the component
tranformation type.
- CalcModeRecord - Class in loci.poi.hssf.record
-
Title: Calc Mode Record
- CalcModeRecord() - Constructor for class loci.poi.hssf.record.CalcModeRecord
-
- CalcModeRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CalcModeRecord
-
Constructs a CalcModeRecord and sets its fields appropriately
- calcPhotons - Variable in class loci.formats.in.SDTInfo
-
No of photons.
- calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Calculates the parameters of the SubbandAn objects that depend on the
Quantizer.
- calcSbParams(SubbandAn, int) - Method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Calculates the parameters of the SubbandAn objects that depend on the
Quantizer.
- calcSize(int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
-
Calculate the storage size of a set of SmallDocumentBlocks
- calculateStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock
-
Calculate how many BATBlocks are needed to hold a specified
number of BAT entries.
- calculateXBATStorageRequirements(int, int) - Static method in class loci.poi.poifs.storage.BATBlock
-
Calculate how many XBATBlocks are needed to hold a specified
number of BAT entries.
- Calibrator - Class in loci.plugins.in
-
Logic for calibrating images.
- Calibrator(ImportProcess) - Constructor for class loci.plugins.in.Calibrator
-
- CALLOUT__CALLOUTACCENTBAR - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTANGLE - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTDROPSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTDROPTYPE - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTLENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTMINUSX - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTMINUSY - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTTEXTBORDER - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__CALLOUTTYPE - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__DROPAUTO - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__ISCALLOUT - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__LENGTHSPECIFIED - Static variable in class loci.poi.ddf.EscherProperties
-
- CALLOUT__XYCALLOUTGAP - Static variable in class loci.poi.ddf.EscherProperties
-
- CAN_GROUP - Static variable in class loci.formats.FormatTools
-
- CAN_GROUP - Static variable in interface loci.formats.IFormatReader
-
- cancel() - Method in class loci.plugins.in.ImportProcess
-
Cancels the import process.
- canceled - Variable in class loci.plugins.LociImporter
-
Flag indicating whether last operation was canceled.
- canceled - Variable in class loci.plugins.Slicer
-
Flag indicating whether last operation was canceled.
- canceled - Variable in class loci.plugins.Updater
-
Flag indicating whether last operation was canceled.
- canChangePattern() - Method in class loci.formats.FileStitcher
-
- canCloseReader - Variable in class loci.formats.gui.ImageViewer
-
- canCreatePalette(ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Returns true
if PaletteBuilder is able to create
palette for given image type.
- canCreatePalette(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Returns true
if PaletteBuilder is able to create
palette for given rendered image.
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- canDecodeInput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- canDoQT() - Method in class loci.formats.gui.LegacyQTTools
-
Whether QuickTime is available to this JVM.
- canDoStacks() - Method in class loci.formats.FormatWriter
-
- canDoStacks() - Method in interface loci.formats.IFormatWriter
-
Reports whether the writer can save multiple images to a single file.
- canDoStacks() - Method in class loci.formats.ImageWriter
-
- canDoStacks() - Method in class loci.formats.out.APNGWriter
-
- canDoStacks() - Method in class loci.formats.out.AVIWriter
-
- canDoStacks() - Method in class loci.formats.out.ICSWriter
-
- canDoStacks() - Method in class loci.formats.out.JavaWriter
-
- canDoStacks() - Method in class loci.formats.out.JPEG2000Writer
-
Overridden to indicate that stacks are not supported.
- canDoStacks() - Method in class loci.formats.out.LegacyQTWriter
-
- canDoStacks() - Method in class loci.formats.out.OMEXMLWriter
-
- canDoStacks() - Method in class loci.formats.out.QTWriter
-
- canDoStacks() - Method in class loci.formats.out.TiffWriter
-
- canDoStacks() - Method in class loci.formats.out.WlzWriter
-
- canDoStacks() - Method in class loci.formats.WriterWrapper
-
- canDoUpgradeCheck() - Method in class loci.formats.UpgradeChecker
-
Return whether or not we are ever allowed to perform an upgrade check.
- canEncodeImage(ImageWriter, ImageTypeSpecifier) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Checks that the provided ImageWriter
can encode
the provided ImageTypeSpecifier
or not.
- canEncodeImage(ImageWriter, ColorModel, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Checks that the provided ImageWriter
can encode
the provided ColorModel
and SampleModel
.
- canEncodeImage(int, ColorModel, SampleModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canEncodeImage(int, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- canEncodeImage(ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- canFitInMemory(long) - Static method in class loci.tests.testng.TestTools
-
Returns true if a byte buffer of the given size will fit in memory.
- canImport(JComponent, DataFlavor[]) - Method in class loci.plugins.shortcut.ShortcutTransferHandler
-
- canInsertEmpty(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canInsertImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canMerge() - Method in class loci.formats.ChannelMerger
-
Determines whether the channels in the file can be merged.
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
-
- canNodeAppear(String, ImageTypeSpecifier) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
-
- CANNOT_GROUP - Static variable in class loci.formats.FormatTools
-
- CANNOT_GROUP - Static variable in interface loci.formats.IFormatReader
-
- CanonRawReader - Class in loci.formats.in
-
CanonRawReader is the file format reader for Canon RAW files.
- CanonRawReader() - Constructor for class loci.formats.in.CanonRawReader
-
Constructs a new Canon RAW reader.
- canRead() - Method in class loci.common.Location
-
If the underlying location is a URL, this method will return true if
the URL exists.
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- canReadRaster() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- canReplacePixels(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canWrite() - Method in class loci.common.Location
-
If the underlying location is a URL, this method will always return false.
- canWriteEmpty() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- canWriteRasters() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- canWriteSequence() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- CAPTURE_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CaseInsensitiveLocation - Class in loci.common
-
Case insensitive variant of Location.
- CaseInsensitiveLocation(String) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation(File) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation(String, String) - Constructor for class loci.common.CaseInsensitiveLocation
-
- CaseInsensitiveLocation(CaseInsensitiveLocation, String) - Constructor for class loci.common.CaseInsensitiveLocation
-
- cat(byte[][]) - Static method in class loci.poi.hpsf.Util
-
Concatenates the contents of several byte arrays into a
single one.
- Catalog - Class in mdbtools.libmdb
-
- Catalog() - Constructor for class mdbtools.libmdb.Catalog
-
- catalog - Variable in class mdbtools.libmdb.MdbHandle
-
- CATEGORY_DATA_TYPE_ALL_TEXT_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- CATEGORY_DATA_TYPE_DATES - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_NUMERIC - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_SEQUENCE - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_SHOW_LABELS_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- CATEGORY_DATA_TYPE_TEXT - Static variable in class loci.poi.hssf.record.SeriesRecord
-
- CATEGORY_DATA_TYPE_VALUE_AND_PERCENTAGE_CHARACTERISTIC - Static variable in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- CategorySeriesAxisRecord - Class in loci.poi.hssf.record
-
This record refers to a category or series axis and is used to specify label/tickmark frequency.
- CategorySeriesAxisRecord() - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord
-
- CategorySeriesAxisRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CategorySeriesAxisRecord
-
Constructs a CategorySeriesAxis record and sets its fields appropriately.
- cbLength - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
The length of the code-block in this packet (in bytes)
- cblk - Variable in class jj2000.j2k.codestream.PrecInfo
-
Code-blocks belonging to this precinct in each subbands of the
resolution level
- CBlkCoordInfo - Class in jj2000.j2k.codestream
-
This class is used to store the coordinates of code-blocks.
- CBlkCoordInfo() - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
-
Constructor.
- CBlkCoordInfo(int, int) - Constructor for class jj2000.j2k.codestream.CBlkCoordInfo
-
Constructor.
- CBlkInfo - Class in jj2000.j2k.codestream.reader
-
This class contains location of code-blocks' piece of codewords
(there is one piece per layer) and some other information.
- CBlkInfo(int, int, int, int, int) - Constructor for class jj2000.j2k.codestream.reader.CBlkInfo
-
Constructs a new instance with specified number of layers and
code-block coordinates.
- CBlkQuantDataSrcDec - Interface in jj2000.j2k.quantization.dequantizer
-
This interface defines a source of quantized wavelet coefficients and
methods to transfer them in a code-block by code-block basis, fro the
decoder side.
- CBlkQuantDataSrcEnc - Interface in jj2000.j2k.quantization.quantizer
-
This interface defines a source of quantized wavelet coefficients and
methods to transfer them in a code-block by code-block basis.
- CBlkRateDistStats - Class in jj2000.j2k.entropy.encoder
-
This class stores coded (compressed) code-blocks with their associated
rate-distortion statistics.
- CBlkRateDistStats() - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Creates a new CBlkRateDistStats object without allocating any space for
'truncRates', 'truncSlopes', 'truncDists' and 'truncIdxs' or 'data'.
- CBlkRateDistStats(int, int, int, byte[], int[], double[], boolean[], int, boolean) - Constructor for class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Creates a new CBlkRateDistStats object and initializes the valid
truncation points, their rates and their slopes, from the 'rates' and
'dist' arrays.
- cblks - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Code-blocks sizes specification
- CBlkSizeSpec - Class in jj2000.j2k.entropy
-
This class extends ModuleSpec class for code-blocks sizes holding purposes.
- CBlkSizeSpec(int, int, byte) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
-
Creates a new CBlkSizeSpec object for the specified number of tiles and
components.
- CBlkSizeSpec(int, int, byte, J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.entropy.CBlkSizeSpec
-
Creates a new CBlkSizeSpec object for the specified number of tiles and
components and the ParameterList instance.
- CBlkWTData - Class in jj2000.j2k.wavelet.analysis
-
This is a generic abstract class to store a code-block of wavelet data, be
it quantized or not.
- CBlkWTData() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTData
-
- CBlkWTDataFloat - Class in jj2000.j2k.wavelet.analysis
-
This is an implementation of the 'CBlkWTData' abstract class for 32 bit
floating point data (float).
- CBlkWTDataFloat() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
- CBlkWTDataInt - Class in jj2000.j2k.wavelet.analysis
-
This is an implementation of the 'CBlkWTData' abstract class for signed 32
bit integer data.
- CBlkWTDataInt() - Constructor for class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
- CBlkWTDataSrc - Interface in jj2000.j2k.wavelet.analysis
-
This abstract class defines methods to transfer wavelet data in a
code-block by code-block basis.
- CBlkWTDataSrcDec - Interface in jj2000.j2k.wavelet.synthesis
-
This abstract class defines methods to transfer wavelet data in a
code-block by code-block basis, for the decoder side.
- cbOff - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
The code-block offset in the codestream (for this packet)
- CBZip2InputStream - Class in loci.common
-
An input stream that decompresses from the BZip2 format (without the file
header chars) to be read as any other stream.
- CBZip2InputStream(InputStream) - Constructor for class loci.common.CBZip2InputStream
-
Constructs a new CBZip2InputStream which decompresses bytes read from
the specified stream.
- ccoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- ccom - Variable in class jj2000.j2k.codestream.HeaderInfo.COM
-
- ce - Variable in class jj2000.j2k.entropy.Progression
-
Component index for the end of a progression.
- CELL_LENGTH - Static variable in class loci.formats.tiff.IFD
-
- CELL_TYPE_BLANK - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Blank Cell type (3)
- CELL_TYPE_BOOLEAN - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Boolean Cell type (4)
- CELL_TYPE_ERROR - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Error Cell type (5)
- CELL_TYPE_FORMULA - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Formula Cell type (2)
- CELL_TYPE_NUMERIC - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
Numeric Cell type (0)
- CELL_TYPE_STRING - Static variable in class loci.poi.hssf.usermodel.HSSFCell
-
String Cell type (1)
- CELL_WIDTH - Static variable in class loci.formats.tiff.IFD
-
- cellIterator() - Method in class loci.poi.hssf.usermodel.HSSFRow
-
- CellomicsReader - Class in loci.formats.in
-
Reader for Cellomics C01 files.
- CellomicsReader() - Constructor for class loci.formats.in.CellomicsReader
-
Constructs a new Cellomics reader.
- CellReference - Class in loci.poi.hssf.util
-
- CellReference(String) - Constructor for class loci.poi.hssf.util.CellReference
-
- CellReference(int, int) - Constructor for class loci.poi.hssf.util.CellReference
-
- CellReference(int, int, boolean, boolean) - Constructor for class loci.poi.hssf.util.CellReference
-
- cells - Variable in class loci.poi.hssf.model.Sheet
-
- CellSensReader - Class in loci.formats.in
-
CellSensReader is the file format reader for cellSens .vsi files.
- CellSensReader() - Constructor for class loci.formats.in.CellSensReader
-
Constructs a new cellSens reader.
- CellValueRecordInterface - Interface in loci.poi.hssf.record
-
The cell value record interface is implemented by all classes of type Record that
contain cell values.
- CellVoyagerReader - Class in loci.formats.in
-
A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope (
http://www.yokogawa.com/scanner/products/cv1000e.htm).
- CellVoyagerReader() - Constructor for class loci.formats.in.CellVoyagerReader
-
- CellWorxReader - Class in loci.formats.in
-
CellWorxReader is the file format reader for CellWorx .pnl files.
- CellWorxReader() - Constructor for class loci.formats.in.CellWorxReader
-
Constructs a new CellWorx reader.
- CENTER - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- CENTER_SELECTION - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- CENTERED_ORDER - Static variable in interface loci.formats.cache.ICacheStrategy
-
- cepoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- certain - Variable in class loci.formats.AxisGuesser
-
Whether the guesser is confident that all axis types are correct.
- CF_BITMAP - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Bitmap
- CF_DIB - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Device Independent Bitmap
- CF_ENHMETAFILE - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Enhanced Windows metafile format
- CF_METAFILEPICT - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format - Windows metafile format.
- CFA_PATTERN - Static variable in class loci.formats.tiff.IFD
-
- cfdHF - Variable in class loci.formats.in.SDTInfo
-
- cfdLH - Variable in class loci.formats.in.SDTInfo
-
- cfdLL - Variable in class loci.formats.in.SDTInfo
-
- cfdZC - Variable in class loci.formats.in.SDTInfo
-
- CFG_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- CFG_SUFFIX - Static variable in class loci.formats.in.PrairieReader
-
- CFTAG_FMTID - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - Format ID
- CFTAG_MACINTOSH - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - Macintosh clipboard format
- CFTAG_NODATA - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - No Data
- CFTAG_WINDOWS - Static variable in class loci.poi.hpsf.Thumbnail
-
Clipboard Format Tag - Windows clipboard format
- chan - Variable in class loci.formats.in.SDTInfo
-
Routing channel number.
- changedUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
-
- changeName(Property, String) - Method in class loci.poi.poifs.property.DirectoryProperty
-
Change a Property's name
- changeOutputFile(String) - Method in class loci.formats.FormatWriter
-
- changeOutputFile(String) - Method in interface loci.formats.IFormatWriter
-
Switch the output file for the current dataset.
- changeOutputFile(String) - Method in class loci.formats.ImageWriter
-
- changeOutputFile(String) - Method in class loci.formats.WriterWrapper
-
- chanMax - Variable in class loci.formats.MinMaxCalculator
-
Max values for each channel.
- chanMin - Variable in class loci.formats.MinMaxCalculator
-
Min values for each channel.
- channel - Variable in class loci.common.NIOFileHandle
-
The file channel backed by the random access file.
- channel - Variable in class loci.common.NIOInputStream
-
The file channel backed by the random access file.
- CHANNEL - Static variable in class loci.formats.FormatTools
-
Identifies the Channel dimensional type,
representing a generic channel dimension.
- Channel - Class in ome.xml.model
-
- Channel() - Constructor for class ome.xml.model.Channel
-
Default constructor.
- Channel(Element, OMEModel) - Constructor for class ome.xml.model.Channel
-
Constructs Channel recursively from an XML DOM tree.
- Channel(Channel) - Constructor for class ome.xml.model.Channel
-
Copy constructor.
- CHANNEL_DEFINITION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CHANNEL_NAME - Static variable in class loci.formats.FormatTools
-
- CHANNEL_NUM - Static variable in class loci.formats.FormatTools
-
- channelColors - Variable in class loci.formats.in.BaseZeissReader
-
- ChannelDefinitionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is designed to represent a Channel Definition Box of
JPEG JP2 file format.
- ChannelDefinitionBox(ColorModel) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
ColorModel
.
- ChannelDefinitionBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
content in byte array.
- ChannelDefinitionBox(short[], short[], short[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
channel definitions.
- ChannelDefinitionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
Constructs a ChannelDefinitionBox
based on the provided
org.w3c.dom.Node
.
- ChannelFiller - Class in loci.formats
-
For indexed color data representing true color, factors out
the indices, replacing them with the color table values directly.
- ChannelFiller() - Constructor for class loci.formats.ChannelFiller
-
Constructs a ChannelFiller around a new image reader.
- ChannelFiller(IFormatReader) - Constructor for class loci.formats.ChannelFiller
-
Constructs a ChannelFiller with a given reader.
- ChannelImageInputStreamSpi - Class in com.sun.media.imageioimpl.stream
-
- ChannelImageInputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
-
- ChannelImageOutputStreamSpi - Class in com.sun.media.imageioimpl.stream
-
- ChannelImageOutputStreamSpi() - Constructor for class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
-
- channelIndices - Variable in class loci.formats.in.BaseZeissReader
-
- ChannelMerger - Class in loci.formats
-
Logic to automatically merge channels in a file.
- ChannelMerger() - Constructor for class loci.formats.ChannelMerger
-
Constructs a ChannelMerger around a new image reader.
- ChannelMerger(IFormatReader) - Constructor for class loci.formats.ChannelMerger
-
Constructs a ChannelMerger with the given reader.
- channelName - Variable in class loci.formats.in.BaseZeissReader
-
- channelName - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- ChannelRef - Class in ome.xml.model
-
- ChannelRef() - Constructor for class ome.xml.model.ChannelRef
-
Default constructor.
- ChannelRef(Element, OMEModel) - Constructor for class ome.xml.model.ChannelRef
-
Constructs ChannelRef recursively from an XML DOM tree.
- ChannelRef(ChannelRef) - Constructor for class ome.xml.model.ChannelRef
-
Copy constructor.
- channels - Variable in class loci.formats.codec.CodecOptions
-
Number of channels.
- channels - Variable in class loci.formats.in.SDTInfo
-
- channels - Variable in class loci.formats.in.SDTReader
-
Number of spectral channels.
- ChannelSeparator - Class in loci.formats
-
Logic to automatically separate the channels in a file.
- ChannelSeparator() - Constructor for class loci.formats.ChannelSeparator
-
Constructs a ChannelSeparator around a new image reader.
- ChannelSeparator(IFormatReader) - Constructor for class loci.formats.ChannelSeparator
-
Constructs a ChannelSeparator with the given reader.
- chanStore - Variable in class loci.formats.in.SDTReader
-
- characterCellHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- characterCellWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- characters(char[], int, int) - Method in class loci.formats.in.FlexReader.FlexHandler
-
- characters(char[], int, int) - Method in class loci.formats.in.ZeissTIFFHandler
-
- ChartFormatRecord - Class in loci.poi.hssf.record
-
Class ChartFormatRecord
- ChartFormatRecord() - Constructor for class loci.poi.hssf.record.ChartFormatRecord
-
- ChartFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartFormatRecord
-
Constructs a ChartFormatRecord record and sets its fields appropriately.
- ChartRecord - Class in loci.poi.hssf.record
-
The chart record is used to define the location and size of a chart.
- ChartRecord() - Constructor for class loci.poi.hssf.record.ChartRecord
-
- ChartRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ChartRecord
-
Constructs a Chart record and sets its fields appropriately.
- check(int) - Method in class loci.poi.util.CommonsLogger
-
Check if a logger is enabled to log at the specified level
- check(int) - Method in class loci.poi.util.NullLogger
-
Check if a logger is enabled to log at the specified level
- check(int) - Method in class loci.poi.util.POILogger
-
Check if a logger is enabled to log at the specified level
- check(int) - Method in class loci.poi.util.SystemOutLogger
-
Check if a logger is enabled to log at the specified level
- checkBufferSize(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
- checkBufferSize(IFormatReader, int, int, int) - Static method in class loci.formats.FormatTools
-
Checks that the given buffer size is large enough to hold a w * h
image as returned by the given reader.
- checkClass(String) - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether the given class is available.
- checkClassDependency(Class<? extends Object>) - Method in class loci.common.services.AbstractService
-
Checks a given class dependency at runtime to ensure that a given class
will be available.
- checkClassDependency(Class<? extends Object>) - Method in class loci.formats.services.WlzServiceImpl
-
- checkDimsLoc(Record, int) - Method in class loci.poi.hssf.model.Sheet
-
in the event the record is a dimensions record, resets both the loc index and dimsloc index
- checkExternSheet(int) - Method in class loci.poi.hssf.model.Workbook
-
returns the extern sheet number for specific sheet number ,
if this sheet doesn't exist in extern sheet , add it
- checkHeader() - Method in class loci.formats.tiff.TiffParser
-
Checks the TIFF header.
- checkImageJ() - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether ImageJ is new enough for the Bio-Formats plugins.
- checkImageJ(String, String) - Static method in class loci.plugins.util.LibraryChecker
-
Returns true the current ImageJ version is greater than or equal to the
specified version.
- checkImageJ(String, String, String) - Static method in class loci.plugins.util.LibraryChecker
-
Returns true the current ImageJ version is greater than or equal to the
specified version.
- checkJava() - Static method in class loci.plugins.util.LibraryChecker
-
Checks for a new enough version of the Java Runtime Environment.
- checkKey(String, String) - Method in class loci.plugins.in.ImporterOptions
-
Tests whether the given boolean key is set in the specified options.
- checkLatest(String, String) - Static method in class loci.plugins.config.InstallWizard
-
- checkLibrary(LibraryChecker.Library, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Checks for a required library.
- checkLibrary(String, String, HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Checks whether the given class is available; if not,
adds the specified JAR file name to the hash set
(presumably to report it missing to the user).
- checkMarkerLength(DataInputStream, String) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Checks that the marker segment length is correct.
- checkMissing(HashSet<String>) - Static method in class loci.plugins.util.LibraryChecker
-
Reports missing libraries in the given hash set to the user.
- checkObsoleteOptions() - Method in class loci.plugins.in.ImporterOptions
-
Handles obsolete macro keys, for backward compatibility.
- checkParams(int, byte[], int, int, int, int) - Method in class loci.formats.FormatWriter
-
Ensure that the arguments that are being passed to saveBytes(...) are
valid.
- checkParams - Variable in class loci.formats.out.TiffWriter
-
Whether or not to check the parameters passed to saveBytes.
- checkPlaneNumber(IFormatReader, int) - Static method in class loci.formats.FormatTools
-
Checks that the given plane number is valid for the given reader.
- checkPlaneParameters(IFormatReader, int, int, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Convenience method for checking that the plane number, tile size and
buffer sizes are all valid for the given reader.
- checkPredTerm() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Checks for past errors in the decoding process using the predictable
error resilient termination.
- checkQTLibrary() - Method in class loci.formats.gui.LegacyQTTools
-
Checks whether QTJava is available, throwing an exception if not.
- checkReadParamBandSettingsWrapper(ImageReadParam, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Wrapper for the protected method checkReadParamBandSettings
.
- checkRecordPosition() - Method in class loci.poi.hssf.record.RecordInputStream
-
- checkSuffix(String, String) - Static method in class loci.formats.FormatHandler
-
Performs suffix matching for the given filename.
- checkSuffix(String, String[]) - Static method in class loci.formats.FormatHandler
-
Performs suffix matching for the given filename.
- checkTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
-
Checks that no error or runtime exception in any target have occurred
so far.
- checkTileSize(IFormatReader, int, int, int, int) - Static method in class loci.formats.FormatTools
-
Checks that the given tile size is valid for the given reader.
- checkValidId(String) - Static method in class loci.common.Location
-
Checks that the given id points at a valid data stream.
- Child - Interface in loci.poi.poifs.property
-
This interface defines methods for finding and setting sibling
Property instances
- childCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- chksum - Variable in class loci.formats.in.SDTInfo
-
- CI_SERVER - Static variable in class loci.formats.UpgradeChecker
-
Location of the OME continuous integration server.
- cIndex - Variable in class loci.formats.in.BaseZeissReader
-
- cIndex - Variable in class loci.plugins.util.DataBrowser
-
- CLASS_ARRAY - Static variable in class loci.poi.hssf.record.formula.Ptg
-
- CLASS_REF - Static variable in class loci.poi.hssf.record.formula.Ptg
-
- CLASS_VALUE - Static variable in class loci.poi.hssf.record.formula.Ptg
-
- ClassID - Class in loci.poi.hpsf
-
Represents a class ID (16 bytes).
- ClassID(byte[], int) - Constructor for class loci.poi.hpsf.ClassID
-
Creates a
ClassID
and reads its value from a byte
array.
- ClassID() - Constructor for class loci.poi.hpsf.ClassID
-
Creates a
ClassID
and initializes its value with
0x00 bytes.
- classID - Variable in class loci.poi.hpsf.PropertySet
-
- ClassList<T> - Class in loci.formats
-
ClassList is a list of classes for use with ImageReader or ImageWriter,
parsed from a configuration file such as readers.txt or writers.txt.
- ClassList(Class<T>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes, initially empty.
- ClassList(String, Class<T>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes from the given configuration file.
- ClassList(String, Class<T>, Class<?>) - Constructor for class loci.formats.ClassList
-
Constructs a list of classes from the given configuration file.
- CLEAN_FAX_DATA_ERRORS_CORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- CLEAN_FAX_DATA_ERRORS_UNCORRECTED - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- CLEAN_FAX_DATA_NO_ERRORS - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
A value to be used with the "CleanFaxData" tag.
- cleanStaleCacheEntries() - Static method in class loci.common.Location
-
Remove any cached directory listings that have expired.
- cleanup() - Method in class loci.formats.Memoizer
-
- cleanup() - Method in class loci.tests.testng.SubResolutionTest
-
- clear() - Method in class loci.formats.codec.ByteVector
-
- clear() - Method in class loci.poi.hpsf.MutableSection
-
Removes all properties from the section including 0 (dictionary) and
1 (codepage).
- clear() - Method in class loci.poi.hssf.record.EscherAggregate
-
- clear() - Method in class loci.poi.util.BinaryTree
-
Removes all mappings from this map
- clear(int) - Method in class loci.poi.util.BitField
-
Clear the bits.
- clear() - Method in class loci.poi.util.DoubleList
-
Removes all of the elements from this list.
- clear() - Method in class loci.poi.util.IntList
-
Removes all of the elements from this list.
- clear() - Method in class loci.poi.util.ShortList
-
Removes all of the elements from this list.
- clearByte(byte) - Method in class loci.poi.util.BitField
-
Clear the bits.
- clearDestImage() - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- clearDirectoryListingsCache() - Static method in class loci.common.Location
-
Clear the directory listings cache.
- clearEscherRecords() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- clearFormatting() - Method in class loci.poi.hssf.record.UnicodeString
-
- clearFormatting() - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Removes any formatting that may have been applied to the string.
- clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
-
- clearRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- clearSections() - Method in class loci.poi.hpsf.MutablePropertySet
-
Removes all sections from this property set.
- clearSections() - Method in class loci.poi.hpsf.SpecialPropertySet
-
- clearSeries() - Method in class loci.plugins.in.ImporterOptions
-
- clearShort(short) - Method in class loci.poi.util.BitField
-
Clear the bits.
- clearSubRecords() - Method in class loci.poi.hssf.record.ObjRecord
-
- ClearTable(int) - Method in class com.sun.media.imageioimpl.common.LZWStringTable
-
- clearTargetErrors() - Method in class jj2000.j2k.util.ThreadPool
-
Clears the current target error conditions, if any.
- cLengths - Variable in class loci.formats.CoreMetadata
-
- cLengths - Variable in class loci.plugins.util.DataBrowser
-
- clip(Shape) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- clip(Shape) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
-
- clipRect(int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- clone() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Clones the directory and all the fields contained therein.
- clone() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- clone() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- clone() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- clone() - Method in class jj2000.j2k.ModuleSpec
-
- clone() - Method in class loci.formats.CoreMetadata
-
- clone(IFormatReader, int) - Method in class loci.formats.CoreMetadata
-
- clone() - Method in class loci.formats.SwappableMetadata
-
- clone(IFormatReader, int) - Method in class loci.formats.SwappableMetadata
-
- clone() - Method in class loci.poi.ddf.EscherRecord
-
Escher records may need to be clonable in the future.
- clone() - Method in class loci.poi.ddf.EscherTextboxRecord
-
- clone() - Method in class loci.poi.ddf.UnknownEscherRecord
-
- clone() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
- clone() - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
Performs a deep clone of the record
- clone() - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
-
- clone() - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
-
Performs a deep clone of the record
- clone() - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
-
Performs a deep clone of the record
- clone() - Method in class loci.poi.hssf.record.AreaFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.AreaRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisLineFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisOptionsRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisParentRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisRecord
-
- clone() - Method in class loci.poi.hssf.record.AxisUsedRecord
-
- clone() - Method in class loci.poi.hssf.record.BarRecord
-
- clone() - Method in class loci.poi.hssf.record.BlankRecord
-
- clone() - Method in class loci.poi.hssf.record.BOFRecord
-
- clone() - Method in class loci.poi.hssf.record.BoolErrRecord
-
- clone() - Method in class loci.poi.hssf.record.BottomMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.CalcCountRecord
-
- clone() - Method in class loci.poi.hssf.record.CalcModeRecord
-
- clone() - Method in class loci.poi.hssf.record.CategorySeriesAxisRecord
-
- clone() - Method in interface loci.poi.hssf.record.CellValueRecordInterface
-
- clone() - Method in class loci.poi.hssf.record.ChartRecord
-
- clone() - Method in class loci.poi.hssf.record.ColumnInfoRecord
-
- clone() - Method in class loci.poi.hssf.record.CommonObjectDataSubRecord
-
- clone() - Method in class loci.poi.hssf.record.ContinueRecord
-
Clone this record.
- clone() - Method in class loci.poi.hssf.record.DataFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.DatRecord
-
- clone() - Method in class loci.poi.hssf.record.DefaultColWidthRecord
-
- clone() - Method in class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- clone() - Method in class loci.poi.hssf.record.DefaultRowHeightRecord
-
- clone() - Method in class loci.poi.hssf.record.DeltaRecord
-
- clone() - Method in class loci.poi.hssf.record.DimensionsRecord
-
- clone() - Method in class loci.poi.hssf.record.EndSubRecord
-
- clone() - Method in class loci.poi.hssf.record.EOFRecord
-
- clone() - Method in class loci.poi.hssf.record.FilePassRecord
-
- clone() - Method in class loci.poi.hssf.record.FileSharingRecord
-
Clone this record.
- clone() - Method in class loci.poi.hssf.record.FontBasisRecord
-
- clone() - Method in class loci.poi.hssf.record.FontIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.FooterRecord
-
- clone() - Method in class loci.poi.hssf.record.formula.AddPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.Area3DPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaErrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaNAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaNPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaNVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.AreaVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ArrayPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgA
-
- clone() - Method in class loci.poi.hssf.record.formula.ArrayPtgV
-
- clone() - Method in class loci.poi.hssf.record.formula.AttrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.BoolPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ConcatPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.DividePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.EqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ErrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ExpPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.FuncPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.FuncVarPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.GreaterEqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.GreaterThanPtg
-
Implementation of clone method from Object
- clone() - Method in class loci.poi.hssf.record.formula.IntersectionPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.IntPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.LessEqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.LessThanPtg
-
Implementation of clone method from Object
- clone() - Method in class loci.poi.hssf.record.formula.MemAreaPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MemErrPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MemFuncPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MissingArgPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.MultiplyPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NamePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NameXPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NotEqualPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.NumberPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ParenthesisPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.PercentPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.PowerPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.Ptg
-
- clone() - Method in class loci.poi.hssf.record.formula.RangePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.Ref3DPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.ReferencePtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefErrorPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefNAPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefNPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefNVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.RefVPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.StringPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.SubtractPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnaryMinusPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnaryPlusPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnionPtg
-
- clone() - Method in class loci.poi.hssf.record.formula.UnknownPtg
-
- clone() - Method in class loci.poi.hssf.record.FormulaRecord
-
- clone() - Method in class loci.poi.hssf.record.FrameRecord
-
- clone() - Method in class loci.poi.hssf.record.GridsetRecord
-
- clone() - Method in class loci.poi.hssf.record.GroupMarkerSubRecord
-
- clone() - Method in class loci.poi.hssf.record.GutsRecord
-
- clone() - Method in class loci.poi.hssf.record.HCenterRecord
-
- clone() - Method in class loci.poi.hssf.record.HeaderRecord
-
- clone() - Method in class loci.poi.hssf.record.IndexRecord
-
- clone() - Method in class loci.poi.hssf.record.IterationRecord
-
- clone() - Method in class loci.poi.hssf.record.LabelRecord
-
- clone() - Method in class loci.poi.hssf.record.LabelSSTRecord
-
- clone() - Method in class loci.poi.hssf.record.LeftMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.LegendRecord
-
- clone() - Method in class loci.poi.hssf.record.LineFormatRecord
-
- clone() - Method in class loci.poi.hssf.record.LinkedDataFormulaField
-
- clone() - Method in class loci.poi.hssf.record.LinkedDataRecord
-
- clone() - Method in class loci.poi.hssf.record.MergeCellsRecord
-
- clone() - Method in class loci.poi.hssf.record.NumberFormatIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.NumberRecord
-
- clone() - Method in class loci.poi.hssf.record.ObjectLinkRecord
-
- clone() - Method in class loci.poi.hssf.record.ObjectProtectRecord
-
- clone() - Method in class loci.poi.hssf.record.ObjRecord
-
- clone() - Method in class loci.poi.hssf.record.PageBreakRecord
-
- clone() - Method in class loci.poi.hssf.record.PaneRecord
-
- clone() - Method in class loci.poi.hssf.record.PasswordRecord
-
Clone this record.
- clone() - Method in class loci.poi.hssf.record.PlotAreaRecord
-
- clone() - Method in class loci.poi.hssf.record.PlotGrowthRecord
-
- clone() - Method in class loci.poi.hssf.record.PrintGridlinesRecord
-
- clone() - Method in class loci.poi.hssf.record.PrintHeadersRecord
-
- clone() - Method in class loci.poi.hssf.record.PrintSetupRecord
-
- clone() - Method in class loci.poi.hssf.record.ProtectRecord
-
- clone() - Method in class loci.poi.hssf.record.Record
-
- clone() - Method in class loci.poi.hssf.record.RefModeRecord
-
- clone() - Method in class loci.poi.hssf.record.RightMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.RKRecord
-
- clone() - Method in class loci.poi.hssf.record.RowRecord
-
- clone() - Method in class loci.poi.hssf.record.SaveRecalcRecord
-
- clone() - Method in class loci.poi.hssf.record.ScenarioProtectRecord
-
- clone() - Method in class loci.poi.hssf.record.SCLRecord
-
- clone() - Method in class loci.poi.hssf.record.SelectionRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesChartGroupIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesIndexRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesLabelsRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesListRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesTextRecord
-
- clone() - Method in class loci.poi.hssf.record.SeriesToChartGroupRecord
-
- clone() - Method in class loci.poi.hssf.record.SharedFormulaRecord
-
- clone() - Method in class loci.poi.hssf.record.SheetPropertiesRecord
-
- clone() - Method in class loci.poi.hssf.record.StringRecord
-
- clone() - Method in class loci.poi.hssf.record.TextObjectBaseRecord
-
- clone() - Method in class loci.poi.hssf.record.TextRecord
-
- clone() - Method in class loci.poi.hssf.record.TickRecord
-
- clone() - Method in class loci.poi.hssf.record.TopMarginRecord
-
- clone() - Method in class loci.poi.hssf.record.UnicodeString
-
- clone() - Method in class loci.poi.hssf.record.UnitsRecord
-
- clone() - Method in class loci.poi.hssf.record.UnknownRecord
-
Unlike the other Record.clone methods this is a shallow clone
- clone() - Method in class loci.poi.hssf.record.ValueRangeRecord
-
- clone() - Method in class loci.poi.hssf.record.VCenterRecord
-
- clone() - Method in class loci.poi.hssf.record.WindowTwoRecord
-
- clone() - Method in class loci.poi.hssf.record.WSBoolRecord
-
- clone() - Method in class mdbtools.libmdb.MdbColumn
-
- clone() - Method in class mdbtools.libmdb.MdbSarg
-
- cloneNode(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- cloneSheet() - Method in class loci.poi.hssf.model.Sheet
-
Clones the low level records of this sheet and returns the new sheet instance.
- cloneSheet(int) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
create an HSSFSheet from an existing sheet in the HSSFWorkbook.
- close() - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
Invokes the superclass method and sets the internal reference
to the source FileChannel
to null
.
- close() - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
Invokes the superclass method, writes any unwritten data, and
sets the internal reference to the source FileChannel
to null
.
- close() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- close() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- close() - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
-
- close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- close() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- close() - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Closes the underlying resource (file, stream, network connection,
etc.).
- close() - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Writes the EOC marker and closes the underlying stream.
- close() - Method in class jj2000.j2k.image.input.ImgReader
-
Closes the underlying file or network connection from where the
image data is being read.
- close() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Closes the underlying RandomAccessFile from where the image data is
being read.
- close() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Closes the buffered random access file
- close() - Method in interface jj2000.j2k.io.RandomAccessIO
-
Closes the I/O stream.
- close() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Closes this object for reading as well as the wrapped InputStream, if
not already closed.
- close() - Method in class loci.common.ByteArrayHandle
-
- close() - Method in class loci.common.CBZip2InputStream
-
- close() - Method in class loci.common.FileHandle
-
- close() - Method in interface loci.common.IRandomAccess
-
Closes this random access stream and releases
any system resources associated with the stream.
- close() - Method in class loci.common.NIOFileHandle
-
- close() - Method in class loci.common.NIOInputStream
-
Closes the streams.
- close() - Method in class loci.common.RandomAccessInputStream
-
Closes the streams.
- close() - Method in class loci.common.RandomAccessOutputStream
-
- close() - Method in class loci.common.StreamHandle
-
- close() - Method in class loci.common.ZipHandle
-
- close(boolean) - Method in class loci.formats.ChannelSeparator
-
- close() - Method in class loci.formats.codec.JPEGTileDecoder
-
- close(boolean) - Method in class loci.formats.DelegateReader
-
- close() - Method in class loci.formats.FileStitcher
-
- close(boolean) - Method in class loci.formats.FileStitcher
-
- close(boolean) - Method in class loci.formats.FormatReader
-
- close() - Method in class loci.formats.FormatReader
-
- close() - Method in class loci.formats.FormatWriter
-
- close() - Method in class loci.formats.gui.PreviewPane
-
Closes the underlying image reader.
- close(boolean) - Method in interface loci.formats.IFormatReader
-
Closes the currently open file.
- close(boolean) - Method in class loci.formats.ImageReader
-
- close() - Method in class loci.formats.ImageReader
-
- close() - Method in class loci.formats.ImageWriter
-
- close(boolean) - Method in class loci.formats.in.AFIReader
-
- close(boolean) - Method in class loci.formats.in.AIMReader
-
- close(boolean) - Method in class loci.formats.in.AliconaReader
-
- close(boolean) - Method in class loci.formats.in.AnalyzeReader
-
- close(boolean) - Method in class loci.formats.in.APLReader
-
- close(boolean) - Method in class loci.formats.in.APNGReader
-
- close(boolean) - Method in class loci.formats.in.AVIReader
-
- close(boolean) - Method in class loci.formats.in.BaseZeissReader
-
- close(boolean) - Method in class loci.formats.in.BDReader
-
- close(boolean) - Method in class loci.formats.in.BioRadReader
-
- close(boolean) - Method in class loci.formats.in.BioRadSCNReader
-
- close(boolean) - Method in class loci.formats.in.BMPReader
-
- close(boolean) - Method in class loci.formats.in.BrukerReader
-
- close(boolean) - Method in class loci.formats.in.BurleighReader
-
- close(boolean) - Method in class loci.formats.in.CanonRawReader
-
- close(boolean) - Method in class loci.formats.in.CellomicsReader
-
- close(boolean) - Method in class loci.formats.in.CellSensReader
-
- close(boolean) - Method in class loci.formats.in.CellWorxReader
-
- close(boolean) - Method in class loci.formats.in.DeltavisionReader
-
- close(boolean) - Method in class loci.formats.in.DicomReader
-
- close(boolean) - Method in class loci.formats.in.DNGReader
-
- close(boolean) - Method in class loci.formats.in.EPSReader
-
- close(boolean) - Method in class loci.formats.in.FakeReader
-
- close(boolean) - Method in class loci.formats.in.FEIReader
-
- close(boolean) - Method in class loci.formats.in.FEITiffReader
-
- close(boolean) - Method in class loci.formats.in.FitsReader
-
- close(boolean) - Method in class loci.formats.in.FlexReader
-
- close(boolean) - Method in class loci.formats.in.FluoviewReader
-
- close(boolean) - Method in class loci.formats.in.FujiReader
-
- close(boolean) - Method in class loci.formats.in.FV1000Reader
-
- close(boolean) - Method in class loci.formats.in.GatanDM2Reader
-
- close(boolean) - Method in class loci.formats.in.GatanReader
-
- close(boolean) - Method in class loci.formats.in.GIFReader
-
- close(boolean) - Method in class loci.formats.in.HamamatsuVMSReader
-
- close(boolean) - Method in class loci.formats.in.HitachiReader
-
- close(boolean) - Method in class loci.formats.in.HRDGDFReader
-
- close(boolean) - Method in class loci.formats.in.ICSReader
-
- close(boolean) - Method in class loci.formats.in.ImaconReader
-
- close(boolean) - Method in class loci.formats.in.ImageIOReader
-
- close(boolean) - Method in class loci.formats.in.ImagicReader
-
- close(boolean) - Method in class loci.formats.in.ImarisHDFReader
-
- close(boolean) - Method in class loci.formats.in.ImarisReader
-
- close(boolean) - Method in class loci.formats.in.IMODReader
-
- close(boolean) - Method in class loci.formats.in.ImprovisionTiffReader
-
- close(boolean) - Method in class loci.formats.in.ImspectorReader
-
- close(boolean) - Method in class loci.formats.in.InCell3000Reader
-
- close(boolean) - Method in class loci.formats.in.InCellReader
-
- close(boolean) - Method in class loci.formats.in.InveonReader
-
- close(boolean) - Method in class loci.formats.in.IPLabReader
-
- close(boolean) - Method in class loci.formats.in.IPWReader
-
- close(boolean) - Method in class loci.formats.in.IvisionReader
-
- close(boolean) - Method in class loci.formats.in.JEOLReader
-
- close(boolean) - Method in class loci.formats.in.JPEG2000Reader
-
- close(boolean) - Method in class loci.formats.in.JPEGReader
-
- close(boolean) - Method in class loci.formats.in.JPXReader
-
- close(boolean) - Method in class loci.formats.in.KhorosReader
-
- close(boolean) - Method in class loci.formats.in.KodakReader
-
- close(boolean) - Method in class loci.formats.in.L2DReader
-
- close(boolean) - Method in class loci.formats.in.LegacyQTReader
-
- close(boolean) - Method in class loci.formats.in.LeicaReader
-
- close(boolean) - Method in class loci.formats.in.LeicaSCNReader
-
- close(boolean) - Method in class loci.formats.in.LiFlimReader
-
- close(boolean) - Method in class loci.formats.in.LIFReader
-
- close(boolean) - Method in class loci.formats.in.LIMReader
-
- close(boolean) - Method in class loci.formats.in.MetamorphReader
-
- close(boolean) - Method in class loci.formats.in.MIASReader
-
- close(boolean) - Method in class loci.formats.in.MicromanagerReader
-
- close(boolean) - Method in class loci.formats.in.MINCReader
-
- close(boolean) - Method in class loci.formats.in.MinimalTiffReader
-
- close(boolean) - Method in class loci.formats.in.MNGReader
-
- close(boolean) - Method in class loci.formats.in.MolecularImagingReader
-
- close(boolean) - Method in class loci.formats.in.MRCReader
-
- close(boolean) - Method in class loci.formats.in.MRWReader
-
- close(boolean) - Method in class loci.formats.in.NAFReader
-
- close(boolean) - Method in class loci.formats.in.NativeND2Reader
-
- close(boolean) - Method in class loci.formats.in.NativeQTReader
-
- close(boolean) - Method in class loci.formats.in.NDPIReader
-
- close(boolean) - Method in class loci.formats.in.NDPISReader
-
- close(boolean) - Method in class loci.formats.in.NiftiReader
-
- close(boolean) - Method in class loci.formats.in.NikonElementsTiffReader
-
- close(boolean) - Method in class loci.formats.in.NikonReader
-
- close(boolean) - Method in class loci.formats.in.NikonTiffReader
-
- close(boolean) - Method in class loci.formats.in.NRRDReader
-
- close(boolean) - Method in class loci.formats.in.OBFReader
-
- close(boolean) - Method in class loci.formats.in.OMETiffReader
-
- close(boolean) - Method in class loci.formats.in.OMEXMLReader
-
- close(boolean) - Method in class loci.formats.in.OpenlabRawReader
-
- close(boolean) - Method in class loci.formats.in.OpenlabReader
-
- close(boolean) - Method in class loci.formats.in.OperettaReader
-
- close(boolean) - Method in class loci.formats.in.PCIReader
-
- close(boolean) - Method in class loci.formats.in.PCORAWReader
-
- close(boolean) - Method in class loci.formats.in.PCXReader
-
- close(boolean) - Method in class loci.formats.in.PDSReader
-
- close(boolean) - Method in class loci.formats.in.PerkinElmerReader
-
- close(boolean) - Method in class loci.formats.in.PGMReader
-
- close(boolean) - Method in class loci.formats.in.PhotoshopTiffReader
-
- close(boolean) - Method in class loci.formats.in.PictReader
-
- close(boolean) - Method in class loci.formats.in.PrairieReader
-
- close(boolean) - Method in class loci.formats.in.PSDReader
-
- close(boolean) - Method in class loci.formats.in.QuesantReader
-
- close(boolean) - Method in class loci.formats.in.RHKReader
-
- close(boolean) - Method in class loci.formats.in.SBIGReader
-
- close(boolean) - Method in class loci.formats.in.ScanrReader
-
- close(boolean) - Method in class loci.formats.in.ScreenReader
-
- close(boolean) - Method in class loci.formats.in.SDTReader
-
- close(boolean) - Method in class loci.formats.in.SIFReader
-
- close(boolean) - Method in class loci.formats.in.SimplePCITiffReader
-
- close(boolean) - Method in class loci.formats.in.SISReader
-
- close(boolean) - Method in class loci.formats.in.SlidebookReader
-
- close(boolean) - Method in class loci.formats.in.SlidebookTiffReader
-
- close(boolean) - Method in class loci.formats.in.SpiderReader
-
- close(boolean) - Method in class loci.formats.in.SVSReader
-
- close(boolean) - Method in class loci.formats.in.TargaReader
-
- close(boolean) - Method in class loci.formats.in.TCSReader
-
- close(boolean) - Method in class loci.formats.in.TextReader
-
- close(boolean) - Method in class loci.formats.in.TiffReader
-
- close(boolean) - Method in class loci.formats.in.TileJPEGReader
-
- close(boolean) - Method in class loci.formats.in.TillVisionReader
-
- close(boolean) - Method in class loci.formats.in.TopometrixReader
-
- close(boolean) - Method in class loci.formats.in.TrestleReader
-
- close(boolean) - Method in class loci.formats.in.UBMReader
-
- close(boolean) - Method in class loci.formats.in.UnisokuReader
-
- close(boolean) - Method in class loci.formats.in.VarianFDFReader
-
- close(boolean) - Method in class loci.formats.in.VisitechReader
-
- close(boolean) - Method in class loci.formats.in.VolocityClippingReader
-
- close(boolean) - Method in class loci.formats.in.VolocityReader
-
- close(boolean) - Method in class loci.formats.in.WlzReader
-
- close(boolean) - Method in class loci.formats.in.ZeissCZIReader
-
- close(boolean) - Method in class loci.formats.in.ZeissLSMReader
-
- close(boolean) - Method in class loci.formats.in.ZeissTIFFReader
-
- close(boolean) - Method in class loci.formats.in.ZeissZVIReader
-
- close(boolean) - Method in class loci.formats.in.ZipReader
-
- close() - Method in class loci.formats.Memoizer
-
- close(boolean) - Method in class loci.formats.Memoizer
-
- close() - Method in interface loci.formats.Memoizer.Deser
-
- close() - Method in class loci.formats.Memoizer.KryoDeser
-
- close(boolean) - Method in class loci.formats.MinMaxCalculator
-
- close() - Method in class loci.formats.out.APNGWriter
-
- close() - Method in class loci.formats.out.AVIWriter
-
- close() - Method in class loci.formats.out.ICSWriter
-
- close() - Method in class loci.formats.out.JavaWriter
-
- close() - Method in class loci.formats.out.LegacyQTWriter
-
- close() - Method in class loci.formats.out.OMETiffWriter
-
- close() - Method in class loci.formats.out.OMEXMLWriter
-
- close() - Method in class loci.formats.out.QTWriter
-
- close() - Method in class loci.formats.out.TiffWriter
-
- close() - Method in class loci.formats.out.WlzWriter
-
- close(boolean) - Method in class loci.formats.ReaderWrapper
-
- close() - Method in class loci.formats.ReaderWrapper
-
- close() - Method in interface loci.formats.services.JPEGTurboService
-
- close() - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- close() - Method in interface loci.formats.services.MDBService
-
Close the currently initialized file.
- close() - Method in class loci.formats.services.MDBServiceImpl
-
- close() - Method in interface loci.formats.services.MetakitService
-
- close() - Method in class loci.formats.services.MetakitServiceImpl
-
- close() - Method in interface loci.formats.services.NetCDFService
-
Closes and resets the service.
- close() - Method in class loci.formats.services.NetCDFServiceImpl
-
- close() - Method in interface loci.formats.services.POIService
-
Close the current POI file system.
- close() - Method in class loci.formats.services.POIServiceImpl
-
- close() - Method in interface loci.formats.services.WlzService
-
Closes the file.
- close() - Method in class loci.formats.services.WlzServiceImpl
-
- close() - Method in class loci.formats.tiff.OnDemandLongArray
-
- close() - Method in class loci.formats.WriterWrapper
-
- close() - Method in class loci.plugins.config.TextAreaWriter
-
Closing a TextAreaWriter does nothing.
- close() - Method in class loci.plugins.macro.LociFunctions
-
- close() - Method in class loci.plugins.util.VirtualImagePlus
-
- close() - Method in class loci.plugins.util.VirtualReader
-
- close() - Method in class loci.poi.poifs.filesystem.DocumentInputStream
-
Closes this input stream and releases any system resources
associated with the stream.
- close() - Method in class loci.poi.poifs.filesystem.DocumentOutputStream
-
Closes this output stream and releases any system resources
associated with this stream.
- close() - Method in class loci.poi.util.BlockingInputStream
-
- close() - Method in class loci.tests.testng.FormatReaderTest
-
- close() - Method in class mdbtools.examples.MemoryRandomAccess
-
- close() - Method in class mdbtools.jdbc2.File
-
- close() - Method in class mdbtools.libmdb.MdbFile
-
- close() - Method in class mdbtools.libmdb.MdbHandle
-
- close() - Method in interface mdbtools.publicapi.RandomAccess
-
- close() - Method in class ome.metakit.MetakitReader
-
Close the reader and release any resources in use.
- CLOSED_CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty
-
- CLOSED_POLYGON - Static variable in class loci.poi.ddf.EscherShapePathProperty
-
- closeFile() - Method in class loci.formats.tools.MakeDatasetStructureTable
-
Close the output file.
- closeFileOnly() - Method in class loci.plugins.macro.LociFunctions
-
- cm - Variable in class loci.formats.FormatWriter
-
Default color model.
- COBOL - Static variable in class loci.common.DateTools
-
- COBOL_EPOCH - Static variable in class loci.common.DateTools
-
- coc - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COC marker segments found in main and first tile-part
header.
- COC - Static variable in interface jj2000.j2k.codestream.Markers
-
Coding style component (COC): 0xFF53
- cod - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COD marker segments found in main and first tile-part
header.
- COD - Static variable in interface jj2000.j2k.codestream.Markers
-
Coding style default (COD): 0xFF52
- codeBlockSize - Variable in class loci.formats.codec.JPEG2000CodecOptions
-
- Codec - Interface in loci.formats.codec
-
This class is an interface for any kind of compression or decompression.
- codec - Variable in class loci.formats.out.LegacyQTWriter
-
The codec to use.
- codec - Variable in class loci.formats.out.QTWriter
-
The codec to use.
- CODEC_ANIMATION - Static variable in class loci.formats.out.QTWriter
-
Value indicating Animation codec.
- CODEC_CINEPAK - Static variable in class loci.formats.out.QTWriter
-
Value indicating Cinepak codec.
- CODEC_H_263 - Static variable in class loci.formats.out.QTWriter
-
Value indicating H.263 codec.
- CODEC_MOTION_JPEG_B - Static variable in class loci.formats.out.QTWriter
-
Value indicating Motion JPEG-B codec.
- CODEC_MPEG_4 - Static variable in class loci.formats.out.QTWriter
-
Value indicating MPEG-4 codec.
- CODEC_RAW - Static variable in class loci.formats.out.QTWriter
-
Value indicating Raw codec.
- CODEC_SORENSON - Static variable in class loci.formats.out.QTWriter
-
Value indicating Sorenson codec.
- CODEC_SORENSON_3 - Static variable in class loci.formats.out.QTWriter
-
Value indicating Sorenson 3 codec.
- CodecOptions - Class in loci.formats.codec
-
Options for compressing and decompressing data.
- CodecOptions() - Constructor for class loci.formats.codec.CodecOptions
-
Construct a new CodecOptions.
- CodecOptions(CodecOptions) - Constructor for class loci.formats.codec.CodecOptions
-
Construct a new CodecOptions using the given CodecOptions.
- CodedCBlk - Class in jj2000.j2k.entropy
-
This is the generic class to store coded (compressed) code-block.
- CodedCBlk() - Constructor for class jj2000.j2k.entropy.CodedCBlk
-
Creates a new CodedCBlk object wit the default values and without
allocating any space for its members.
- CodedCBlk(int, int, int, byte[]) - Constructor for class jj2000.j2k.entropy.CodedCBlk
-
Creates a new CodedCBlk object with the specified values.
- CodedCBlkDataSrcDec - Interface in jj2000.j2k.entropy.decoder
-
This interface defines a source of entropy coded data and methods to
transfer it in a code-block by code-block basis.
- CodedCBlkDataSrcEnc - Interface in jj2000.j2k.entropy.encoder
-
This interface defines a source of entropy coded data and methods to
transfer it in a code-block by code-block basis.
- CodedEnum - Interface in loci.common.enumeration
-
Enumeration which is coded.
- CODEPAGE - Static variable in class loci.poi.hssf.record.CodepageRecord
-
the likely correct value for CODEPAGE (at least for US versions).
- CODEPAGE - Static variable in class loci.poi.hssf.record.InterfaceHdrRecord
-
suggested (and probably correct) default
- CodepageRecord - Class in loci.poi.hssf.record
-
Title: Codepage Record
- CodepageRecord() - Constructor for class loci.poi.hssf.record.CodepageRecord
-
- CodepageRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CodepageRecord
-
Constructs a CodepageRecord and sets its fields appropriately
- codepageToEncoding(int) - Static method in class loci.poi.hpsf.VariantSupport
-
Turns a codepage number into the equivalent character encoding's
name.
- CodestreamManipulator - Class in jj2000.j2k.util
-
This class takes a legal JPEG 2000 codestream and performs some
manipulation on it.
- CodestreamManipulator(File, int, int, boolean, boolean, boolean, boolean) - Constructor for class jj2000.j2k.util.CodestreamManipulator
-
Instantiates a codestream manipulator..
- CodestreamWriter - Class in jj2000.j2k.codestream.writer
-
This is the abstract class for writing to a bit stream.
- CodestreamWriter(int) - Constructor for class jj2000.j2k.codestream.writer.CodestreamWriter
-
Allocates this object and initializes the maximum numner of
bytes.
- codeSymbol(int, int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function performs the arithmetic encoding of one symbol.
- codeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function performs the arithmetic encoding of several symbols
together.
- col_fixed_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
-
- col_from - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion
-
upper right hand corner col
- col_num - Variable in class mdbtools.libmdb.MdbColumn
-
- col_num_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
-
- col_prec - Variable in class mdbtools.libmdb.MdbColumn
-
- col_scale - Variable in class mdbtools.libmdb.MdbColumn
-
- col_size - Variable in class mdbtools.libmdb.MdbColumn
-
- col_size_offset - Variable in class mdbtools.libmdb.MdbFormatConstants
-
- col_to - Variable in class loci.poi.hssf.record.MergeCellsRecord.MergedRegion
-
lower right hand corner col
- col_type - Variable in class mdbtools.libmdb.MdbColumn
-
- colBreaks - Variable in class loci.poi.hssf.model.Sheet
-
- colCount - Variable in class loci.formats.in.BaseZeissReader
-
- collapseColInfoRecords(int) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
- collapseColumn(short) - Method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
- collapseRow(int) - Method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
-
- Color - Class in ome.xml.model.primitives
-
Primitive type that represents an RGBA color.
- Color(Integer) - Constructor for class ome.xml.model.primitives.Color
-
- Color(int, int, int, int) - Constructor for class ome.xml.model.primitives.Color
-
- COLOR_MAP - Static variable in class loci.formats.tiff.IFD
-
- COLOR_MODE_COLORIZED - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_COMPOSITE - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_CUSTOM - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_DEFAULT - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_MODE_GRAYSCALE - Static variable in class loci.plugins.in.ImporterOptions
-
- COLOR_NORMAL - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
normal type of black color.
- COLOR_RED - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
Dark Red color
- COLOR_SPACE - Static variable in class loci.formats.tiff.IFD
-
- COLOR_SPACE_SRGB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ColorSpace" tag.
- COLOR_SPACE_UNCALIBRATED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ColorSpace" tag.
- colorConverter - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
A TIFFColorConverter
object describing the color space of
the encoded pixel data, or null
.
- colorCount - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- ColorDialog - Class in loci.plugins.in
-
Bio-Formats Importer custom color chooser dialog box.
- ColorDialog(ImportProcess) - Constructor for class loci.plugins.in.ColorDialog
-
- Colorizer - Class in loci.plugins.in
-
Logic for colorizing images.
- Colorizer(ImportProcess) - Constructor for class loci.plugins.in.Colorizer
-
- colorMap - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the ColorMap
tag.
- colorModeChoice - Variable in class loci.plugins.in.MainDialog
-
- colorModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The image's ColorModel.
- colorModel - Variable in class loci.formats.codec.CodecOptions
-
Color model to use when constructing an image (WRITE).
- colorResolution - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- colorsImportant - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- colorSpace - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- ColorSpecificationBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Color Specification Box of JPEG JP2
file format.
- ColorSpecificationBox(byte, byte, byte, int, ICC_Profile) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Creates a ColorSpecificationBox
from the provided data
elements.
- ColorSpecificationBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Creates a ColorSpecificationBox
from the provided byte
array.
- ColorSpecificationBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
Constructs a ColorSpecificationBox
based on the provided
org.w3c.dom.Node
.
- colorsUsed - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- colorTableSizes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- COLOUR_SPECIFICATION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- colT - Variable in class loci.formats.in.SDTInfo
-
- column - Variable in class loci.formats.tools.AmiraParameters
-
- Column - Class in ome.metakit
-
Class representing a column in a Metakit database file.
- Column(String) - Constructor for class ome.metakit.Column
-
Construct a new column from the given string representation.
- ColumnComparator - Class in mdbtools.dbengine
-
Compare the values from a column in two rows
- ColumnComparator() - Constructor for class mdbtools.dbengine.ColumnComparator
-
- ColumnInfoRecord - Class in loci.poi.hssf.record
-
Title: ColumnInfo Record
- ColumnInfoRecord() - Constructor for class loci.poi.hssf.record.ColumnInfoRecord
-
- ColumnInfoRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ColumnInfoRecord
-
Constructs a ColumnInfo record and sets its fields appropriately
- ColumnInfoRecordsAggregate - Class in loci.poi.hssf.record.aggregates
-
- ColumnInfoRecordsAggregate() - Constructor for class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
- ColumnMap - Class in ome.metakit
-
Class representating a column mapping in a Metakit database file.
- ColumnMap(Column, RandomAccessInputStream, int) - Constructor for class ome.metakit.ColumnMap
-
- columns - Variable in class loci.poi.hssf.model.Sheet
-
- columns - Variable in class mdbtools.libmdb.MdbTableDef
-
- ColumnTest - Class in mdbtools.tests
-
- ColumnTest() - Constructor for class mdbtools.tests.ColumnTest
-
- com - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the COM marker segments found in main and tile-part
headers.
- COM - Static variable in interface jj2000.j2k.codestream.Markers
-
Comment (COM): 0xFF64
- com.luratech.lwf - package com.luratech.lwf
-
- com.sun.media.imageio.plugins.bmp - package com.sun.media.imageio.plugins.bmp
-
Package containing the public classes used by the Sun BMP plug-in for
the Image I/O Framework.
- com.sun.media.imageio.plugins.jpeg2000 - package com.sun.media.imageio.plugins.jpeg2000
-
Package containing the public classes used by the Sun JPEG 2000 plug-in for
the Image I/O Framework.
- com.sun.media.imageio.plugins.pnm - package com.sun.media.imageio.plugins.pnm
-
Package containing the public classes used by the Sun PNM plug-in for
the Image I/O Framework.
- com.sun.media.imageio.plugins.tiff - package com.sun.media.imageio.plugins.tiff
-
Package containing the public classes used by the TIFF plug-in for
the Image I/O Framework.
- com.sun.media.imageio.stream - package com.sun.media.imageio.stream
-
Provides ImageInputStream
and ImageOutputStream
classes for use with the Java Image I/O Framework.
- com.sun.media.imageioimpl.common - package com.sun.media.imageioimpl.common
-
- com.sun.media.imageioimpl.plugins.bmp - package com.sun.media.imageioimpl.plugins.bmp
-
- com.sun.media.imageioimpl.plugins.clib - package com.sun.media.imageioimpl.plugins.clib
-
- com.sun.media.imageioimpl.plugins.gif - package com.sun.media.imageioimpl.plugins.gif
-
- com.sun.media.imageioimpl.plugins.jpeg - package com.sun.media.imageioimpl.plugins.jpeg
-
- com.sun.media.imageioimpl.plugins.jpeg2000 - package com.sun.media.imageioimpl.plugins.jpeg2000
-
- com.sun.media.imageioimpl.plugins.pcx - package com.sun.media.imageioimpl.plugins.pcx
-
- com.sun.media.imageioimpl.plugins.png - package com.sun.media.imageioimpl.plugins.png
-
- com.sun.media.imageioimpl.plugins.pnm - package com.sun.media.imageioimpl.plugins.pnm
-
- com.sun.media.imageioimpl.plugins.raw - package com.sun.media.imageioimpl.plugins.raw
-
- com.sun.media.imageioimpl.plugins.tiff - package com.sun.media.imageioimpl.plugins.tiff
-
- com.sun.media.imageioimpl.plugins.wbmp - package com.sun.media.imageioimpl.plugins.wbmp
-
- com.sun.media.imageioimpl.stream - package com.sun.media.imageioimpl.stream
-
- com.sun.media.jai.imageioimpl - package com.sun.media.jai.imageioimpl
-
- com.sun.media.jai.operator - package com.sun.media.jai.operator
-
Provides JAI operations which read and write images using the Java Image
I/O Framework.
- ComboFileFilter - Class in loci.formats.gui
-
A file filter that recognizes files from a union of other filters.
- ComboFileFilter(FileFilter[], String) - Constructor for class loci.formats.gui.ComboFileFilter
-
Constructs a new filter from a list of other filters.
- CommentAnnotation - Class in ome.xml.model
-
- CommentAnnotation() - Constructor for class ome.xml.model.CommentAnnotation
-
Default constructor.
- CommentAnnotation(Element, OMEModel) - Constructor for class ome.xml.model.CommentAnnotation
-
Constructs CommentAnnotation recursively from an XML DOM tree.
- CommentAnnotation(CommentAnnotation) - Constructor for class ome.xml.model.CommentAnnotation
-
Copy constructor.
- comments - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- comments - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- CommentShape - Class in loci.poi.hssf.model
-
Represents a cell comment.
- CommentShape(HSSFComment, int) - Constructor for class loci.poi.hssf.model.CommentShape
-
Creates the low-level records for a comment.
- commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Writes the header data to the bit stream, if it has not been already
done.
- commitBitstreamHeader(HeaderEncoder) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Writes the header data in the codestream and actualize ndata with the
header length.
- CommonObjectDataSubRecord - Class in loci.poi.hssf.record
-
The common object data record is used to store all common preferences for an excel object.
- CommonObjectDataSubRecord() - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord
-
- CommonObjectDataSubRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CommonObjectDataSubRecord
-
Constructs a CommonObjectData record and sets its fields appropriately.
- CommonsLogger - Class in loci.poi.util
-
A logger class that strives to make it as easy as possible for
developers to write log calls, while simultaneously making those
calls as cheap as possible by performing lazy evaluation of the log
message.
- CommonsLogger() - Constructor for class loci.poi.util.CommonsLogger
-
- comp - Variable in class jj2000.j2k.roi.encoder.ROI
-
The components for which the ROI is relevant
- COMP_POS_RES_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType
-
The bit stream is Component/Position/Resolution/Layer progressive : 4
- COMPANION_SUFFIXES - Static variable in class loci.formats.in.TiffReader
-
- compare(Object, Object) - Method in class loci.formats.cache.CacheStrategy
-
Default comparator orders dimensional positions based on distance from the
current position, taking into account axis priorities and planar ordering.
- compare(Object, Object) - Method in class loci.poi.poifs.property.DirectoryProperty.PropertyComparator
-
compare method.
- compareTo(Object) - Method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Compares this TIFFField
with another
TIFFField
by comparing the tags.
- compareTo(Object) - Method in class loci.formats.gui.ComboFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.gui.ExtensionFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.gui.FormatFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.gui.NoExtensionFileFilter
-
Compares two FileFilter objects alphanumerically.
- compareTo(Object) - Method in class loci.formats.tiff.TiffIFDEntry
-
- compareTo(TiffRational) - Method in class loci.formats.tiff.TiffRational
-
Compares this object with the specified object for order.
- compareTo(Object) - Method in class loci.plugins.config.FormatEntry
-
- compareTo(Object) - Method in class loci.plugins.config.LibraryEntry
-
- compareTo(ThumbLoader.SeriesInfo) - Method in class loci.plugins.in.ThumbLoader.SeriesInfo
-
- compareTo(Object) - Method in class loci.poi.hssf.record.aggregates.FormulaRecordAggregate
-
- compareTo(Object) - Method in class loci.poi.hssf.record.BlankRecord
-
- compareTo(Object) - Method in class loci.poi.hssf.record.BoolErrRecord
-
- compareTo(Object) - Method in class loci.poi.hssf.record.FormulaRecord
-
- compareTo(Object) - Method in class loci.poi.hssf.record.LabelSSTRecord
-
- compareTo(Object) - Method in class loci.poi.hssf.record.NumberRecord
-
- compareTo(Object) - Method in class loci.poi.hssf.record.RowRecord
-
- compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString
-
- compareTo(Object) - Method in class loci.poi.hssf.record.UnicodeString.FormatRun
-
- compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRichTextString
-
Compares one rich text string to another.
- compareTo(Object) - Method in class loci.poi.hssf.usermodel.HSSFRow
-
- compareTo(Region) - Method in class loci.poi.hssf.util.Region
-
Compares that the given region is the same less than or greater than this
region.
- compareTo(Object) - Method in class loci.poi.hssf.util.Region
-
- compDef - Variable in class jj2000.j2k.ModuleSpec
-
The default value for each component.
- COMPLEX - Static variable in class loci.poi.ddf.EscherShapePathProperty
-
- COMPONENT_MAPPING_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- ComponentMappingBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Color Specification Box of JPEG JP2
file format.
- ComponentMappingBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Constructs a ComponentMappingBox
from the provided
content byte array.
- ComponentMappingBox(short[], byte[], byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Constructs a ComponentMappingBox
from the provided
component mapping.
- ComponentMappingBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
Constructs a ComponentMappingBox
based on the provided
org.w3c.dom.Node
.
- COMPONENTS_CONFIGURATION - Static variable in class loci.formats.tiff.IFD
-
- COMPONENTS_CONFIGURATION_B - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_CB - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_CR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_DOES_NOT_EXIST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_G - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_R - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- COMPONENTS_CONFIGURATION_Y - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "ComponentsConfiguration" tag.
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Composes the content byte array from the data elements.
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ColorSpecificationBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.FileTypeBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.PaletteBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
- compose() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
- composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Append newString
to the end of oldString
.
- composeString(byte[], byte) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Append newString
to the end of oldString
.
- compress(byte[], int, int) - Method in class com.sun.media.imageioimpl.common.LZWCompressor
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.Base64Codec
-
- compress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec
-
2D data block encoding default implementation.
- compress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec
-
Compresses a block of data.
- compress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec
-
Compresses a block of data.
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEGCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZOCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.LZWCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.MJPBCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSRLECodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.MSVideoCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.NikonCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.PackbitsCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.RPZACodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.TargaRLECodec
-
- compress(byte[], CodecOptions) - Method in class loci.formats.codec.ZlibCodec
-
- compress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression
-
Encodes a strip of data.
- compress(byte[]) - Static method in class loci.poi.ddf.EscherBlipWMFRecord
-
Compress the contents of the provided array
- compressBuffer(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer
-
Compresses the buffer.
- CompressDecompressTest - Class in loci.tests.testng
-
Tests the various codec used to compress and decompress data.
- CompressDecompressTest() - Constructor for class loci.tests.testng.CompressDecompressTest
-
- compressed - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- COMPRESSED_BITS_PER_PIXEL - Static variable in class loci.formats.tiff.IFD
-
- compression - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the Compression
tag.
- compression - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- compression - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- compression - Variable in class loci.formats.FormatWriter
-
Current compression type.
- COMPRESSION - Static variable in class loci.formats.tiff.IFD
-
- Compression - Enum in ome.xml.model.enums
-
- COMPRESSION_CCITT_RLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_CCITT_T_4 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_CCITT_T_6 - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_DEFLATE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_GZIP - Static variable in class loci.formats.in.LiFlimReader
-
- COMPRESSION_J2K - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_J2K_LOSSY - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_JPEG - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- COMPRESSION_LZW - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_LZW - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_NONE - Static variable in class loci.formats.in.LiFlimReader
-
- COMPRESSION_OLD_JPEG - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_PACKBITS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- COMPRESSION_SUFFIXES - Static variable in class loci.formats.FormatHandler
-
Suffixes for supported compression types.
- COMPRESSION_UNCOMPRESSED - Static variable in class loci.formats.out.TiffWriter
-
- COMPRESSION_ZLIB - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Compression" tag.
- CompressionEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for Compression.
- CompressionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CompressionEnumHandler
-
- compressionNumbers - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Compression tag values for known compression types.
- compressionTagValue - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
The value to be assigned to the TIFF Compression tag in the
TIFF image metadata.
- compressionType - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
The name of the compression type supported by this compressor.
- CompressionType - Enum in loci.formats.codec
-
An enumeration of compression types.
- compressionTypeNames - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- compressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Known TIFF compression types.
- compressionTypes - Variable in class loci.formats.FormatWriter
-
Available compression types.
- compressionTypes - Variable in class loci.formats.ImageWriter
-
Compression types for all file format writers.
- CompTransfSpec - Class in jj2000.j2k.image
-
This class extends ModuleSpec class in order to hold tile
specifications for component transformation
- CompTransfSpec(int, int, byte) - Constructor for class jj2000.j2k.image.CompTransfSpec
-
Constructs an empty 'CompTransfSpec' with specified number of
tile and components.
- computeAxisLengths() - Method in class loci.formats.FileStitcher
-
Computes axis length arrays, and total axis lengths.
- computeIndices(int) - Method in class loci.formats.FileStitcher
-
Gets the file index, and image index into that file,
corresponding to the given global image index.
- computeRegionsWrapper(ImageReadParam, boolean, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Wrapper for the protected method computeRegions
.
- computeRegionsWrapper(ImageReadParam, int, int, BufferedImage, Rectangle, Rectangle) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
Wrapper for the protected method computeRegions
.
- ConCat - Class in mdbtools.dbengine.functions
-
- ConCat() - Constructor for class mdbtools.dbengine.functions.ConCat
-
- concatenate(List<ImagePlus>) - Method in class loci.plugins.in.Concatenator
-
Concatenates the list of images as appropriate.
- concatenateBox - Variable in class loci.plugins.in.MainDialog
-
- Concatenator - Class in loci.plugins.in
-
Logic for concatenating multiple images together.
- Concatenator() - Constructor for class loci.plugins.in.Concatenator
-
- ConcatPtg - Class in loci.poi.hssf.record.formula
-
- ConcatPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.ConcatPtg
-
- ConcatPtg() - Constructor for class loci.poi.hssf.record.formula.ConcatPtg
-
- CONCURRENCY_PROP_NAME - Static variable in class jj2000.j2k.util.ThreadPool
-
The name of the property that sets the concurrency level:
jj2000.j2k.util.ThreadPool.concurrency
- Condition - Class in mdbtools.dbengine.sql
-
- Condition() - Constructor for class mdbtools.dbengine.sql.Condition
-
- configTree - Static variable in class loci.tests.testng.FormatReaderTest
-
Configuration tree structure containing dataset metadata.
- configTree - Static variable in class loci.tests.testng.FormatWriterTest
-
Configuration tree structure containing dataset metadata.
- Configuration - Class in loci.tests.testng
-
- Configuration(String, String) - Constructor for class loci.tests.testng.Configuration
-
- Configuration(IFormatReader, String) - Constructor for class loci.tests.testng.Configuration
-
- ConfigurationTree - Class in loci.tests.testng
-
Stores configuration data about files in a directory structure.
- ConfigurationTree(String) - Constructor for class loci.tests.testng.ConfigurationTree
-
Creates a new configuration tree rooted at
the given directory in the file system.
- ConfigWindow - Class in loci.plugins.config
-
A window for managing configuration of the Bio-Formats plugins.
- ConfigWindow() - Constructor for class loci.plugins.config.ConfigWindow
-
- Constants - Class in loci.common
-
Constants that are used within many classes in loci.common.
- Constants() - Constructor for class loci.common.Constants
-
- Constants - Class in loci.poi.hpsf
-
Defines constants of general use.
- Constants() - Constructor for class loci.poi.hpsf.Constants
-
- Constants - Class in mdbtools.libmdb
-
copied from mdbtools.h
- Constants() - Constructor for class mdbtools.libmdb.Constants
-
- construct(int, List) - Method in class loci.poi.hssf.record.aggregates.ValueRecordsAggregate
-
- constructDialog() - Method in class loci.plugins.in.ColorDialog
-
- constructDialog() - Method in class loci.plugins.in.CropDialog
-
- constructDialog() - Method in class loci.plugins.in.FilePatternDialog
-
- constructDialog() - Method in class loci.plugins.in.IdDialog
-
- constructDialog() - Method in class loci.plugins.in.ImporterDialog
-
- constructDialog() - Method in class loci.plugins.in.LocationDialog
-
- constructDialog() - Method in class loci.plugins.in.MainDialog
-
- constructDialog() - Method in class loci.plugins.in.MemoryDialog
-
- constructDialog() - Method in class loci.plugins.in.RangeDialog
-
- constructDialog() - Method in class loci.plugins.in.SeriesDialog
-
- constructDialog() - Method in class loci.plugins.in.SwapDialog
-
- constructDialog() - Method in class loci.plugins.in.UpgradeDialog
-
- constructImage(int, int, int, int, boolean, boolean, DataBuffer) - Static method in class loci.formats.gui.AWTImageTools
-
Creates an image with the given DataBuffer.
- constructImage(int, int, int, int, boolean, boolean, DataBuffer, ColorModel) - Static method in class loci.formats.gui.AWTImageTools
-
Creates an image with the given DataBuffer.
- constructLoader() - Static method in class loci.formats.gui.LegacyQTTools
-
- contains(int, short) - Method in class loci.poi.hssf.util.Region
-
Answers: "is the row/column inside this range?"
- contains(double) - Method in class loci.poi.util.DoubleList
-
Returns true if this list contains the specified element.
- contains(int) - Method in class loci.poi.util.IntList
-
Returns true if this list contains the specified element.
- contains(short) - Method in class loci.poi.util.ShortList
-
Returns true if this list contains the specified element.
- containsAll(DoubleList) - Method in class loci.poi.util.DoubleList
-
Returns true if this list contains all of the elements of the
specified collection.
- containsAll(IntList) - Method in class loci.poi.util.IntList
-
Returns true if this list contains all of the elements of the
specified collection.
- containsAll(ShortList) - Method in class loci.poi.util.ShortList
-
Returns true if this list contains all of the elements of the
specified collection.
- containsKey(Object) - Method in class loci.poi.util.BinaryTree
-
Returns true if this map contains a mapping for the specified
key.
- containsPoint(int, int) - Method in class loci.common.Region
-
Returns true if the point specified by the given X and Y coordinates
is contained within this region.
- containsTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Determines whether a TIFF field with the given tag number is
contained in this directory.
- containsValue(int[], int) - Static method in class loci.common.DataTools
-
Returns true if the given value is contained in the given array.
- containsValue(Object) - Method in class loci.poi.util.BinaryTree
-
Returns true if this map maps one or more keys to the
specified value.
- CONTIGUOUS_CODESTREAM_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- ContinueRecord - Class in loci.poi.hssf.record
-
Title: Continue Record - Helper class used primarily for SST Records
- ContinueRecord() - Constructor for class loci.poi.hssf.record.ContinueRecord
-
default constructor
- ContinueRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.ContinueRecord
-
Main constructor -- kinda dummy because we don't validate or fill fields
- CONTRAST - Static variable in class loci.formats.tiff.IFD
-
- CONTRAST_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Contrast" tag.
- CONTRAST_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Contrast" tag.
- CONTRAST_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Contrast" tag.
- ContrastMethod - Enum in ome.xml.model.enums
-
- ContrastMethodEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for ContrastMethod.
- ContrastMethodEnumHandler() - Constructor for class ome.xml.model.enums.handlers.ContrastMethodEnumHandler
-
- ControlPtg - Class in loci.poi.hssf.record.formula
-
- ControlPtg() - Constructor for class loci.poi.hssf.record.formula.ControlPtg
-
- ConversionTest - Class in loci.tests.testng
-
- ConversionTest() - Constructor for class loci.tests.testng.ConversionTest
-
- convert(String, String) - Static method in class loci.formats.FormatTools
-
Convenience method for converting the specified input file to the
specified output file.
- convert(IFormatReader, IFormatWriter, String) - Static method in class loci.formats.FormatTools
-
Convenience method for writing all of the images and metadata obtained
from the specified IFormatReader into the specified IFormatWriter.
- convert(long, RandomAccessInputStream, int, int, int) - Static method in class loci.poi.poifs.storage.DocumentBlock
-
convert a single long array into an array of DocumentBlock
instances
- convert(byte[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
-
convert a single long array into an array of SmallDocumentBlock
instances
- convert(BlockWritable[], int) - Static method in class loci.poi.poifs.storage.SmallDocumentBlock
-
Factory for creating SmallDocumentBlocks from DocumentBlocks
- ConvertAnchor - Class in loci.poi.hssf.model
-
$Id: ConvertAnchor.java 562536 2007-08-03 18:09:41Z yegor $
- ConvertAnchor() - Constructor for class loci.poi.hssf.model.ConvertAnchor
-
- convertDate(long, int) - Static method in class loci.common.DateTools
-
Converts the given timestamp into an ISO8601 date.
- convertDate(long, int, String) - Static method in class loci.common.DateTools
-
Converts the given timestamp into a date string with the given format.
- convertDate(long, int, String, boolean) - Static method in class loci.common.DateTools
-
Converts the given timestamp into a date string with the given format.
- convertFactor - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The value by which the absolute value of the data has to be divided in
order to get the real absolute value.
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Creates a default image metadata object and merges in the
supplied metadata.
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- convertImageMetadata(IIOMetadata, ImageTypeSpecifier, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- convertMetadata(MetadataRetrieve, MetadataStore) - Static method in class loci.formats.meta.MetadataConverter
-
Copies information from a metadata retrieval object
(source) into a metadata store (destination).
- convertMetadata(String, MetadataStore) - Method in interface loci.formats.services.OMEXMLService
-
Converts information from an OME-XML string (source)
into a metadata store (destination).
- convertMetadata(MetadataRetrieve, MetadataStore) - Method in interface loci.formats.services.OMEXMLService
-
Copies information from a metadata retrieval object
(source) into a metadata store (destination).
- convertMetadata(String, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- convertMetadata(MetadataRetrieve, MetadataStore) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- convertObjectToString(Object) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Converts the provided object to String
- convertRenderedImage(RenderedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Converts a java.awt.image.RenderedImage into a
java.awt.image.BufferedImage.
- convertSharedFormulaRecord(FormulaRecord) - Method in class loci.poi.hssf.record.SharedFormulaRecord
-
Creates a non shared formula from the shared formula counter part
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Creates a default stream metadata object and merges in the
supplied metadata.
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- convertStreamMetadata(IIOMetadata, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- convertToByte(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- convertToExpMantissa(float) - Static method in class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Converts the floating point value to its exponent-mantissa
representation.
- convertToFloat() - Method in class loci.plugins.util.RecordedImageProcessor
-
- convertToRGB() - Method in class loci.plugins.util.RecordedImageProcessor
-
- convertToShort(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- convolve(float[], int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- convolve3x3(int[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- coordinates - Variable in class loci.formats.in.BaseZeissReader
-
- CoordInfo - Class in jj2000.j2k.codestream
-
This class is used to store the coordinates of objects such as code-blocks
or precincts.
- CoordInfo(int, int, int, int) - Constructor for class jj2000.j2k.codestream.CoordInfo
-
Constructor.
- CoordInfo() - Constructor for class jj2000.j2k.codestream.CoordInfo
-
Empty contructor
- copy(byte[], int, int, byte[], int) - Static method in class loci.poi.hpsf.Util
-
Copies a part of a byte array into another byte array.
- copy(byte[], int, int) - Static method in class loci.poi.hpsf.Util
-
Copies bytes from a source byte array into a new byte
array.
- copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics
-
- copyArea(int, int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- copyBinDataList() - Method in class ome.xml.model.Mask
-
- copyBinDataList() - Method in class ome.xml.model.Pixels
-
- copyBits(ImageProcessor, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- copyBooleanAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyChannelList() - Method in class ome.xml.model.Pixels
-
- copyCommentAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Copies an arbitrary rectangular region of the RenderedImage
into a caller-supplied WritableRaster.
- copyData(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- copyDatasetList() - Method in class ome.xml.model.OME
-
- copyDetectorList() - Method in class ome.xml.model.Instrument
-
- copyDichroicList() - Method in class ome.xml.model.Instrument
-
- copyDoubleAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyExperimenterGroupList() - Method in class ome.xml.model.OME
-
- copyExperimenterList() - Method in class ome.xml.model.OME
-
- copyExperimentList() - Method in class ome.xml.model.OME
-
- copyFileAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyFilterList() - Method in class ome.xml.model.Instrument
-
- copyFilterSetList() - Method in class ome.xml.model.Instrument
-
- copyImageList() - Method in class ome.xml.model.OME
-
- copyInstrumentList() - Method in class ome.xml.model.OME
-
- copyInt(byte[], int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Copies that four bytes of an integer into the byte array.
- copyLightSourceList() - Method in class ome.xml.model.Instrument
-
- copyLightSourceSettingsList() - Method in class ome.xml.model.MicrobeamManipulation
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Annotation
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Channel
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Dataset
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Experimenter
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.ExperimenterGroup
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Image
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Pixels
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Plane
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Plate
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.PlateAcquisition
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Project
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Reagent
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.ROI
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Screen
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.Well
-
- copyLinkedAnnotationList() - Method in class ome.xml.model.WellSample
-
- copyLinkedChannelList() - Method in class ome.xml.model.Annotation
-
- copyLinkedChannelList() - Method in class ome.xml.model.FilterSet
-
- copyLinkedDatasetList() - Method in class ome.xml.model.Annotation
-
- copyLinkedDatasetList() - Method in class ome.xml.model.Experimenter
-
- copyLinkedDatasetList() - Method in class ome.xml.model.ExperimenterGroup
-
- copyLinkedDatasetList() - Method in class ome.xml.model.Image
-
- copyLinkedDatasetList() - Method in class ome.xml.model.Project
-
- copyLinkedEmissionFilterList() - Method in class ome.xml.model.FilterSet
-
- copyLinkedEmissionFilterList() - Method in class ome.xml.model.LightPath
-
- copyLinkedExcitationFilterList() - Method in class ome.xml.model.FilterSet
-
- copyLinkedExcitationFilterList() - Method in class ome.xml.model.LightPath
-
- copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Annotation
-
- copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Experimenter
-
- copyLinkedExperimenterGroupList() - Method in class ome.xml.model.Leader
-
- copyLinkedExperimenterList() - Method in class ome.xml.model.Annotation
-
- copyLinkedExperimenterList() - Method in class ome.xml.model.ExperimenterGroup
-
- copyLinkedExperimentList() - Method in class ome.xml.model.Experimenter
-
- copyLinkedFilterSetEmissionFilterList() - Method in class ome.xml.model.Filter
-
- copyLinkedFilterSetExcitationFilterList() - Method in class ome.xml.model.Filter
-
- copyLinkedFilterSetList() - Method in class ome.xml.model.Dichroic
-
- copyLinkedImageList() - Method in class ome.xml.model.Annotation
-
- copyLinkedImageList() - Method in class ome.xml.model.Dataset
-
- copyLinkedImageList() - Method in class ome.xml.model.Experiment
-
- copyLinkedImageList() - Method in class ome.xml.model.Experimenter
-
- copyLinkedImageList() - Method in class ome.xml.model.ExperimenterGroup
-
- copyLinkedImageList() - Method in class ome.xml.model.Instrument
-
- copyLinkedImageList() - Method in class ome.xml.model.MicrobeamManipulation
-
- copyLinkedImageList() - Method in class ome.xml.model.ROI
-
- copyLinkedLaserList() - Method in class ome.xml.model.Pump
-
- copyLinkedLeaderList() - Method in class ome.xml.model.ExperimenterGroup
-
- copyLinkedLightPathEmissionFilterList() - Method in class ome.xml.model.Filter
-
- copyLinkedLightPathExcitationFilterList() - Method in class ome.xml.model.Filter
-
- copyLinkedLightPathList() - Method in class ome.xml.model.Dichroic
-
- copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Experimenter
-
- copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.Image
-
- copyLinkedMicrobeamManipulationList() - Method in class ome.xml.model.ROI
-
- copyLinkedPixelsList() - Method in class ome.xml.model.Annotation
-
- copyLinkedPlaneList() - Method in class ome.xml.model.Annotation
-
- copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.Annotation
-
- copyLinkedPlateAcquisitionList() - Method in class ome.xml.model.WellSample
-
- copyLinkedPlateList() - Method in class ome.xml.model.Annotation
-
- copyLinkedPlateList() - Method in class ome.xml.model.Screen
-
- copyLinkedProjectList() - Method in class ome.xml.model.Annotation
-
- copyLinkedProjectList() - Method in class ome.xml.model.Dataset
-
- copyLinkedProjectList() - Method in class ome.xml.model.Experimenter
-
- copyLinkedProjectList() - Method in class ome.xml.model.ExperimenterGroup
-
- copyLinkedReagentList() - Method in class ome.xml.model.Annotation
-
- copyLinkedROIList() - Method in class ome.xml.model.Annotation
-
- copyLinkedROIList() - Method in class ome.xml.model.Image
-
- copyLinkedROIList() - Method in class ome.xml.model.MicrobeamManipulation
-
- copyLinkedScreenList() - Method in class ome.xml.model.Annotation
-
- copyLinkedScreenList() - Method in class ome.xml.model.Plate
-
- copyLinkedWellList() - Method in class ome.xml.model.Annotation
-
- copyLinkedWellList() - Method in class ome.xml.model.Reagent
-
- copyLinkedWellSampleList() - Method in class ome.xml.model.Annotation
-
- copyLinkedWellSampleList() - Method in class ome.xml.model.Image
-
- copyLinkedWellSampleList() - Method in class ome.xml.model.PlateAcquisition
-
- copyListAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyLongAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyMicrobeamManipulationList() - Method in class ome.xml.model.Experiment
-
- copyNodes(POIFSFileSystem, POIFSFileSystem, List) - Method in class loci.poi.POIDocument
-
Copies nodes from one POIFS to the other minus the excepts
- copyObjectiveList() - Method in class ome.xml.model.Instrument
-
- copyPlaneList() - Method in class ome.xml.model.Pixels
-
- copyPlateAcquisitionList() - Method in class ome.xml.model.Plate
-
- copyPlateList() - Method in class ome.xml.model.OME
-
- copyProjectList() - Method in class ome.xml.model.OME
-
- copyReagentList() - Method in class ome.xml.model.Screen
-
- copyright - Static variable in class jj2000.j2k.JJ2KInfo
-
The copyright message string.
- COPYRIGHT - Static variable in class loci.formats.tiff.IFD
-
- copyROIList() - Method in class ome.xml.model.OME
-
- copyScaled(BufferedImage, BufferedImage, Object) - Static method in class loci.formats.gui.AWTImageTools
-
Copies the source image into the target, applying scaling.
- copyScreenList() - Method in class ome.xml.model.OME
-
- copyShapeList() - Method in class ome.xml.model.Union
-
- copyTagAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyTermAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyTiffDataList() - Method in class ome.xml.model.Pixels
-
- copyTimestampAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- copyWellList() - Method in class ome.xml.model.Plate
-
- copyWellSampleList() - Method in class ome.xml.model.Well
-
- copyXMLAnnotationList() - Method in class ome.xml.model.StructuredAnnotations
-
- core - Variable in class loci.formats.FormatReader
-
Core metadata values.
- coreIndex - Variable in class loci.formats.FormatReader
-
The number of the current series.
- coreIndexToSeries(int) - Method in class loci.formats.FileStitcher
-
- coreIndexToSeries(int) - Method in class loci.formats.FormatReader
-
- coreIndexToSeries(int) - Method in interface loci.formats.IFormatReader
-
Returns the series corresponding to the specified core index.
- coreIndexToSeries(int) - Method in class loci.formats.ImageReader
-
- coreIndexToSeries(int) - Method in class loci.formats.ReaderWrapper
-
- CoreMetadata - Class in loci.formats
-
Encompasses core metadata values.
- CoreMetadata() - Constructor for class loci.formats.CoreMetadata
-
- CoreMetadata(IFormatReader, int) - Constructor for class loci.formats.CoreMetadata
-
- CoreMetadata(CoreMetadata) - Constructor for class loci.formats.CoreMetadata
-
- Correction - Enum in ome.xml.model.enums
-
- CorrectionEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for Correction.
- CorrectionEnumHandler() - Constructor for class ome.xml.model.enums.handlers.CorrectionEnumHandler
-
- CorruptedCodestreamException - Exception in jj2000.j2k.codestream
-
Thsi exception is thrown whenever an illegal value is read from a
bit stream.
- CorruptedCodestreamException() - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException
-
Constructs a new CorruptedCodestreamException exception
with no detail message.
- CorruptedCodestreamException(String) - Constructor for exception jj2000.j2k.codestream.CorruptedCodestreamException
-
Constructs a new CorruptedCodestreamException exception
with the specified detail message.
- cortime - Variable in class loci.formats.in.SDTInfo
-
Correlation time [ms].
- COUNT - Static variable in class loci.poi.hssf.record.FnGroupCountRecord
-
suggested default (14 dec)
- Count - Class in mdbtools.dbengine.functions
-
- Count() - Constructor for class mdbtools.dbengine.functions.Count
-
- countBlocks() - Method in interface loci.poi.poifs.filesystem.BATManaged
-
Return the number of BigBlock's this instance uses
- countBlocks() - Method in class loci.poi.poifs.filesystem.POIFSDocument
-
Return the number of BigBlock's this instance uses
- countBlocks() - Method in class loci.poi.poifs.property.PropertyTable
-
Return the number of BigBlock's this instance uses
- countBlocks() - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
-
Return the number of BigBlock's this instance uses
- countBlocks() - Method in class loci.poi.poifs.storage.SmallBlockTableWriter
-
Return the number of BigBlock's this instance uses
- countImages() - Method in class loci.formats.in.BaseZeissReader
-
- countImages() - Method in class loci.formats.in.ZeissTIFFReader
-
- countImages() - Method in class loci.formats.in.ZeissZVIReader
-
- countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
-
Total count of all children and their children's children.
- countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShape
-
Count of all children and their childrens children.
- countOfAllChildren() - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
-
Count of all children and their childrens children.
- CountryRecord - Class in loci.poi.hssf.record
-
Title: Country Record (aka WIN.INI country)
- CountryRecord() - Constructor for class loci.poi.hssf.record.CountryRecord
-
- CountryRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.CountryRecord
-
Constructs a CountryRecord and sets its fields appropriately
- CP_037 - Static variable in class loci.poi.hpsf.Constants
-
Codepage 037, a special case
- CP_EUC_JP - Static variable in class loci.poi.hpsf.Constants
-
Codepage for EUC-JP
- CP_EUC_KR - Static variable in class loci.poi.hpsf.Constants
-
Codepage for EUC-KR
- CP_GB18030 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for GB18030
- CP_GB2312 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for GB2312
- CP_GBK - Static variable in class loci.poi.hpsf.Constants
-
Codepage for GBK, aka MS936
- CP_ISO_2022_JP1 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-2022-JP
- CP_ISO_2022_JP2 - Static variable in class loci.poi.hpsf.Constants
-
Another codepage for ISO-2022-JP
- CP_ISO_2022_JP3 - Static variable in class loci.poi.hpsf.Constants
-
Yet another codepage for ISO-2022-JP
- CP_ISO_2022_KR - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-2022-KR
- CP_ISO_8859_1 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-1
- CP_ISO_8859_2 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-2
- CP_ISO_8859_3 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-3
- CP_ISO_8859_4 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-4
- CP_ISO_8859_5 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-5
- CP_ISO_8859_6 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-6
- CP_ISO_8859_7 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-7
- CP_ISO_8859_8 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-8
- CP_ISO_8859_9 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for ISO-8859-9
- CP_JOHAB - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Johab
- CP_KOI8_R - Static variable in class loci.poi.hpsf.Constants
-
Codepage for KOI8-R
- CP_MAC_ARABIC - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Arabic (Java: MacArabic)
- CP_MAC_CENTRAL_EUROPE - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Central Europe (Latin-2)
(Java: MacCentralEurope)
- CP_MAC_CHINESE_SIMPLE - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Chinese Simplified (Java: unknown - use
EUC_CN, ISO2022_CN_GB, MS936 or cp935)
- CP_MAC_CHINESE_TRADITIONAL - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Chinese Traditional (Java: unknown - use Big5,
MS950, or cp937)
- CP_MAC_CROATIAN - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Croatian (Java: MacCroatian)
- CP_MAC_CYRILLIC - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Cyrillic (Java: MacCyrillic)
- CP_MAC_GREEK - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Greek (Java: MacGreek)
- CP_MAC_HEBREW - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Hebrew (Java: MacHebrew)
- CP_MAC_ICELAND - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Iceland (Java: MacIceland)
- CP_MAC_JAPAN - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Japan (Java: unknown - use SJIS, cp942 or
cp943)
- CP_MAC_KOREAN - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Korean (Java: unknown - use EUC_KR or
cp949)
- CP_MAC_ROMAN - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Roman (Java: MacRoman)
- CP_MAC_ROMANIA - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Romanian (Java: MacRomania)
- CP_MAC_THAI - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Thai (Java: MacThai)
- CP_MAC_TURKISH - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Turkish (Java: MacTurkish)
- CP_MAC_UKRAINE - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Macintosh Ukrainian (Java: MacUkraine)
- CP_MS949 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for MS949
- CP_SJIS - Static variable in class loci.poi.hpsf.Constants
-
Codepage for SJIS
- CP_UNICODE - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Unicode
- CP_US_ACSII - Static variable in class loci.poi.hpsf.Constants
-
Codepage for US-ASCII
- CP_US_ASCII2 - Static variable in class loci.poi.hpsf.Constants
-
Another codepage for US-ASCII
- CP_UTF16 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for UTF-16
- CP_UTF16_BE - Static variable in class loci.poi.hpsf.Constants
-
Codepage for UTF-16 big-endian
- CP_UTF8 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for UTF-8
- CP_WINDOWS_1250 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1250
- CP_WINDOWS_1251 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1251
- CP_WINDOWS_1252 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1252
- CP_WINDOWS_1253 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1253
- CP_WINDOWS_1254 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1254
- CP_WINDOWS_1255 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1255
- CP_WINDOWS_1256 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1256
- CP_WINDOWS_1257 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1257
- CP_WINDOWS_1258 - Static variable in class loci.poi.hpsf.Constants
-
Codepage for Windows 1258
- cqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
-
- CRC - Class in loci.common
-
A simple class to hold and calculate the CRC for sanity checking the data.
- CRC() - Constructor for class loci.common.CRC
-
- CRC_32_TABLE - Static variable in class loci.common.CRC
-
- create(InputStream) - Static method in class loci.poi.hpsf.PropertySetFactory
-
- create() - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- create(int, int, int, int) - Method in class loci.poi.hssf.usermodel.DummyGraphics2d
-
- create() - Method in class loci.poi.hssf.usermodel.EscherGraphics
-
- create() - Method in class loci.poi.hssf.usermodel.EscherGraphics2d
-
- create(String, Properties) - Static method in class loci.poi.hssf.usermodel.FontDetails
-
Create an instance of FontDetails
by loading them from the
provided property object.
- createAggregate(List, int, DrawingManager2) - Static method in class loci.poi.hssf.record.EscherAggregate
-
Collapses the drawing records into an aggregate.
- createAnchor(HSSFAnchor) - Method in class loci.poi.hssf.model.AbstractShape
-
Creates an escher anchor record from a HSSFAnchor.
- createAnchor(HSSFAnchor) - Static method in class loci.poi.hssf.model.ConvertAnchor
-
- createArrayForType(int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Creates an array appropriate for the indicated data type.
- createBackup() - Method in class loci.poi.hssf.model.Workbook
-
creates the Backup record with backup set to 0.
- createBATBlocks(int[], int) - Static method in class loci.poi.poifs.storage.BATBlock
-
Create an array of BATBlocks from an array of int block
allocation table entries
- createBlank(int, short) - Method in class loci.poi.hssf.model.Sheet
-
create a BLANK record (does not add it to the records contained in this sheet)
- createBlocks(int) - Method in class loci.poi.poifs.storage.BlockAllocationTableWriter
-
Create the BATBlocks we need
- createBOF() - Method in class loci.poi.hssf.model.Sheet
-
creates the BOF record
- createBOF() - Method in class loci.poi.hssf.model.Workbook
-
creates the BOF record
- createBookBool() - Method in class loci.poi.hssf.model.Workbook
-
creates the BookBool record with saveLinkValues set to 0.
- createBoundSheet(int) - Method in class loci.poi.hssf.model.Workbook
-
create a "bound sheet" or "bundlesheet" (depending who you ask) record
Always sets the sheet's bof to 0.
- createBox(int, Node) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Creates a Box
object with the provided type
based on the provided Node object based on reflection.
- createBuilder() - Static method in class loci.common.xml.XMLTools
-
- createBuiltInName(byte, int) - Method in class loci.poi.hssf.model.Workbook
-
Generates a NameRecord to represent a built-in region
- createCalcCount() - Method in class loci.poi.hssf.model.Sheet
-
creates the CalcCount record and sets it to 0x64 (default number of iterations)
- createCalcMode() - Method in class loci.poi.hssf.model.Sheet
-
creates the CalcMode record and sets it to 1 (automatic formula caculation)
- createCell(short) - Method in class loci.poi.hssf.usermodel.HSSFRow
-
Use this to create new cells within the row and return it.
- createCell(short, int) - Method in class loci.poi.hssf.usermodel.HSSFRow
-
Use this to create new cells within the row and return it.
- createCellFromRecord(CellValueRecordInterface) - Method in class loci.poi.hssf.usermodel.HSSFRow
-
create a high level HSSFCell object from an existing low level record.
- createCellStyle() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
create a new Cell style and add it to the workbook's style table
- createCellXF() - Method in class loci.poi.hssf.model.Workbook
-
creates a new Cell-type Extneded Format Record and adds it to the end of
ExtendedFormatRecords collection
- createCodepage() - Method in class loci.poi.hssf.model.Workbook
-
creates the Codepage record containing the constant stored in CODEPAGE
- createColInfo() - Method in class loci.poi.hssf.model.Sheet
-
creates the ColumnInfo Record and sets it to a default column/width
- createColInfo() - Static method in class loci.poi.hssf.record.aggregates.ColumnInfoRecordsAggregate
-
creates the ColumnInfo Record and sets it to a default column/width
- createColorModel(SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Creates a ColorModel
that may be used with the
specified SampleModel
.
- createColorModel(ColorSpace, SampleModel) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- createComment(HSSFAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
-
Constructs a cell comment.
- createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.Index16ColorModel
-
- createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.SignedColorModel
-
- createCompatibleWritableRaster(int, int) - Method in class loci.formats.gui.UnsignedIntColorModel
-
- createCountry() - Method in class loci.poi.hssf.model.Workbook
-
Creates the Country record with the default country set to 1
and current country set to 7 in case of russian locale ("ru_RU") and 1 otherwise
- created - Variable in class loci.formats.out.QTWriter
-
Time the file was created.
- createData() - Method in class loci.tests.IOTester
-
- createDataFormat() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
Returns the instance of HSSFDataFormat for this workbook.
- createDateWindow1904() - Method in class loci.poi.hssf.model.Workbook
-
creates the DateWindow1904 record with windowing set to 0.
- createDefaultColWidth() - Method in class loci.poi.hssf.model.Sheet
-
creates the DefaultColWidth Record and sets it to 8
- createDefaultRowHeight() - Method in class loci.poi.hssf.model.Sheet
-
creates the DefaultRowHeight Record and sets its options to 0 and rowheight to 0xff
- createDelta() - Method in class loci.poi.hssf.model.Sheet
-
creates the Delta record and sets it to 0.0010 (default accuracy)
- createDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Returns the dequantizer parameters.
- createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager
-
- createDgRecord() - Method in class loci.poi.hssf.model.DrawingManager2
-
- createDimensions() - Method in class loci.poi.hssf.model.Sheet
-
creates the Dimensions Record and sets it to bogus values (you should set this yourself
or let the high level API do it for you)
- createDirectory(String) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
-
create a new DirectoryEntry
- createDirectory(String) - Method in class loci.poi.poifs.filesystem.DirectoryNode
-
create a new DirectoryEntry
- createDirectory(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
-
create a new DirectoryEntry in the root directory
- createDocument() - Static method in class loci.common.xml.XMLTools
-
- createDocument(String, RandomAccessInputStream) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
-
create a new DocumentEntry
- createDocument(String, int, POIFSWriterListener) - Method in interface loci.poi.poifs.filesystem.DirectoryEntry
-
create a new DocumentEntry; the data will be provided later
- createDocument(String, RandomAccessInputStream) - Method in class loci.poi.poifs.filesystem.DirectoryNode
-
create a new DocumentEntry
- createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.DirectoryNode
-
create a new DocumentEntry; the data will be provided later
- createDocument(RandomAccessInputStream, String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
-
Create a new document to be added to the root directory
- createDocument(String, int, POIFSWriterListener) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
-
create a new DocumentEntry in the root entry; the data will be
provided later
- createDocumentInputStream(String) - Method in class loci.poi.poifs.filesystem.POIFSFileSystem
-
open a document in the root entry's list of entries
- createDrawingGroup() - Method in class loci.poi.hssf.model.Workbook
-
Creates a drawing group record.
- createDrawingPatriarch() - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
Creates the toplevel drawing patriarch.
- createDSF() - Method in class loci.poi.hssf.model.Workbook
-
creates the DSF record containing a 0 since HSSF can't even create Dual Stream Files
- createEntropyDecoder(CodedCBlkDataSrcDec, J2KImageReadParamJava) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Creates and returns the entropy decoder corresponding to the
information read from the codestream header and with the special
additional parameters from the parameter list.
- createEOF() - Method in class loci.poi.hssf.model.Sheet
-
creates the EOF record
- createEOF() - Method in class loci.poi.hssf.model.Workbook
-
creates the EOF record
- createExtendedFormat(int) - Method in class loci.poi.hssf.model.Workbook
-
Creates an ExtendedFormatRecord object
- createExtendedFormat() - Method in class loci.poi.hssf.model.Workbook
-
creates an default cell type ExtendedFormatRecord object.
- createExtendedSST() - Method in class loci.poi.hssf.model.Workbook
-
Creates the ExtendedSST record with numstrings per bucket set to 0x8.
- createExternSheet() - Method in class loci.poi.hssf.model.Workbook
-
creates a new extern sheet record
- createExtSSTRecord(int) - Method in class loci.poi.hssf.record.SSTRecord
-
Creates an extended string record based on the current contents of
the current SST record.
- createFnGroupCount() - Method in class loci.poi.hssf.model.Workbook
-
creates the FnGroupCount record containing the Magic number constant of 14.
- createFont() - Method in class loci.poi.hssf.model.Workbook
-
creates a Font record with the following magic values:
- createFont() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
create a new Font and add it to the workbook's font table
- createFooter() - Method in class loci.poi.hssf.model.Sheet
-
creates the Footer Record and sets it to nothing/0 length
- createFormat(int) - Method in class loci.poi.hssf.model.Workbook
-
Creates a FormatRecord object
- createFormat(String) - Method in class loci.poi.hssf.model.Workbook
-
Creates a FormatRecord, inserts it, and returns the index code.
- createFormula(int, short, String) - Method in class loci.poi.hssf.model.Sheet
-
Attempts to parse the formula into PTGs and create a formula record
DOES NOT WORK YET
- createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.model.Sheet
-
Creates a split (freezepane).
- createFreezePane(int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
Creates a split (freezepane).
- createFreezePane(int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
Creates a split (freezepane).
- createFromMetadata(IIOMetadata) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Creates a TIFFDirectory
instance from the contents of
an image metadata object.
- createFromMetadataNode(TIFFTagSet, Node) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFField
-
Creates a TIFFField
from a TIFF native image
metadata node.
- createGridset() - Method in class loci.poi.hssf.model.Sheet
-
creates the Gridset record and sets it to true (user has mucked with the gridlines)
- createGroup(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
-
Creates a new group record stored under this patriarch.
- createGroup(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
-
Create another group under this group.
- createGuts() - Method in class loci.poi.hssf.model.Sheet
-
creates the Guts record and sets leftrow/topcol guttter and rowlevelmax/collevelmax to 0
- createHCenter() - Method in class loci.poi.hssf.model.Sheet
-
creates the HCenter Record and sets it to false (don't horizontally center)
- createHeader() - Method in class loci.poi.hssf.model.Sheet
-
creates the Header Record and sets it to nothing/0 length
- createHideObj() - Method in class loci.poi.hssf.model.Workbook
-
creates the HideObj record with hide object set to 0.
- createImage(String, List<ImageProcessor>) - Static method in class loci.plugins.in.ImagePlusReader
-
Creates an
ImagePlus
from the given image processors.
- createImage(String, ImageStack, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader
-
Creates an
ImagePlus
from the given image stack.
- createImage() - Method in class loci.plugins.util.RecordedImageProcessor
-
- createIndex() - Method in class loci.poi.hssf.model.Sheet
-
creates the Index record - not currently used
- createIndexColorModel(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Creates an palette representing colors from given image
img
.
- createIndexedImage(RenderedImage) - Static method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
Creates an image representing given image
src
using IndexColorModel.
- createInputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageInputStreamSpi
-
- createInstance(RandomAccessIO, HeaderDecoder, J2KImageReadParamJava, DecoderSpecs, boolean, HeaderInfo) - Static method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Creates a bit stream reader of the correct type that works on the
provided RandomAccessIO, with the special parameters from the parameter
list.
- createInstance(CBlkQuantDataSrcEnc, J2KImageWriteParamJava, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Static method in class jj2000.j2k.entropy.encoder.EntropyCoder
-
Creates a EntropyCoder object for the appropriate entropy coding
parameters in the parameter list 'pl', and having 'src' as the source
of quantized data.
- createInstance(CodedCBlkDataSrcEnc, float, CodestreamWriter, J2KImageWriteParamJava) - Static method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Creates a PostCompRateAllocator object for the appropriate rate
allocation parameters in the parameter list 'pl', having 'src' as the
source of entropy coded data, 'rate' as the target bitrate and 'bw' as
the bit stream writer object.
- createInstance(CBlkWTDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.quantization.quantizer.Quantizer
-
Creates a Quantizer object for the appropriate type of quantization
specified in the options in the parameter list 'pl', and having 'src'
as the source of data to be quantized.
- createInstance(Quantizer, J2KImageWriteParamJava) - Static method in class jj2000.j2k.roi.encoder.ROIScaler
-
Creates a ROIScaler object.
- createInstance(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Static method in class jj2000.j2k.roi.ROIDeScaler
-
Creates a ROIDeScaler object.
- createInstance(BlkImgDataSrc, J2KImageWriteParamJava) - Static method in class jj2000.j2k.wavelet.analysis.ForwardWT
-
Creates a ForwardWT object with the specified filters, and with other
options specified in the parameter list 'pl'.
- createInstance(CBlkWTDataSrcDec, DecoderSpecs) - Static method in class jj2000.j2k.wavelet.synthesis.InverseWT
-
Creates an InverseWT object that works on the data type of the source,
with the special additional parameters from the parameter
list.
- createInstances() - Method in class loci.tests.testng.FormatReaderTestFactory
-
- createInstances() - Method in class loci.tests.testng.FormatWriterTestFactory
-
- createInterfaceEnd() - Method in class loci.poi.hssf.model.Workbook
-
creates the InterfaceEnd record
- createInterfaceHdr() - Method in class loci.poi.hssf.model.Workbook
-
creates the InterfaceHdr record
- createIteration() - Method in class loci.poi.hssf.model.Sheet
-
creates the Iteration record and sets it to false (don't iteratively calculate formulas)
- createLabelSST(int, short, int) - Method in class loci.poi.hssf.model.Sheet
-
Create a LABELSST Record (does not add it to the records contained in this sheet)
- createLogFile() - Static method in class loci.tests.testng.TestTools
-
Creates a new log file.
- createLSID(String, int...) - Static method in class loci.formats.MetadataTools
-
Constructs an LSID, given the object type and indices.
- createMergedCells() - Method in class loci.poi.hssf.model.Sheet
-
- createMMS() - Method in class loci.poi.hssf.model.Workbook
-
creates an MMS record
- createName() - Method in class loci.poi.hssf.model.Workbook
-
creates new name
- createName() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
creates a new named range and add it to the model
- createNewDocument() - Method in class ome.xml.meta.AbstractOMEXMLMetadata
-
- createNewFile() - Method in class loci.common.Location
-
Creates a new empty file named by this Location's path name iff a file
with this name does not already exist.
- createNewFont() - Method in class loci.poi.hssf.model.Workbook
-
creates a new font record and adds it to the "font table".
- createNumber(int, short, double) - Method in class loci.poi.hssf.model.Sheet
-
Create a NUMBER Record (does not add it to the records contained in this sheet)
- createObjectProtect() - Method in class loci.poi.hssf.model.Sheet
-
creates an ObjectProtect record with protect set to false.
- createOMEXMLMetadata() - Static method in class loci.formats.MetadataTools
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package.
- createOMEXMLMetadata() - Method in interface loci.formats.services.OMEXMLService
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package.
- createOMEXMLMetadata(String) - Method in interface loci.formats.services.OMEXMLService
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package,
wrapping a DOM representation of the given OME-XML string.
- createOMEXMLMetadata(String, String) - Method in interface loci.formats.services.OMEXMLService
-
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome
package,
wrapping a DOM representation of the given OME-XML string.
- createOMEXMLMetadata() - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOMEXMLMetadata(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOMEXMLMetadata(String, String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOMEXMLRoot(String) - Method in interface loci.formats.services.OMEXMLService
-
Constructs an OME root node.
- createOMEXMLRoot(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- createOutputStreamInstance(Object, boolean, File) - Method in class com.sun.media.imageioimpl.stream.ChannelImageOutputStreamSpi
-
- createPalette() - Method in class loci.poi.hssf.model.Workbook
-
Creates a palette record initialized to the default palette
- createParsedExpressionTokens(short, RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg
-
- createPassword() - Method in class loci.poi.hssf.model.Sheet
-
creates a Password record with password set to 00.
- createPassword() - Method in class loci.poi.hssf.model.Workbook
-
creates the Password record with password set to 0.
- createPasswordRev4() - Method in class loci.poi.hssf.model.Workbook
-
creates the PasswordRev4 record with password set to 0.
- createPicture(HSSFClientAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
-
Creates a picture.
- createPicture(HSSFChildAnchor, int) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
-
Creates a picture.
- createPolygon(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
-
Creates a polygon
- createPolygon(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
-
Creates a polygon
- createPrecision() - Method in class loci.poi.hssf.model.Workbook
-
creates the Precision record with precision set to true.
- createPrintGridlines() - Method in class loci.poi.hssf.model.Sheet
-
creates the PrintGridlines record and sets it to false (that makes for ugly sheets).
- createPrintHeaders() - Method in class loci.poi.hssf.model.Sheet
-
creates the PrintHeaders record and sets it to false (we don't create headers yet so why print them)
- createPrintSetup() - Method in class loci.poi.hssf.model.Sheet
-
creates the PrintSetup Record and sets it to defaults and marks it invalid
- createProcessor(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- createProperties(byte[], int, short) - Method in class loci.poi.ddf.EscherPropertyFactory
-
Create new properties from a byte array.
- createPropertyBlockArray(List, int) - Static method in class loci.poi.poifs.storage.PropertyBlock
-
Create an array of PropertyBlocks from an array of Property
instances, creating empty Property instances to make up any
shortfall
- createProtect() - Method in class loci.poi.hssf.model.Sheet
-
creates a Protect record with protect set to false.
- createProtect() - Method in class loci.poi.hssf.model.Workbook
-
creates the Protect record with protect set to false.
- createProtectionRev4() - Method in class loci.poi.hssf.model.Workbook
-
creates the ProtectionRev4 record with protect set to false.
- createPtg(RecordInputStream) - Static method in class loci.poi.hssf.record.formula.Ptg
-
- createRawImage() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Creates a BufferedImage
whose underlying data
array will be suitable for holding the raw decoded output of
the decodeRaw
method.
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- createReaderInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- createRecord(byte[], int) - Method in class loci.poi.ddf.DefaultEscherRecordFactory
-
Generates an escher record including the any children contained under that record.
- createRecord(byte[], int) - Method in interface loci.poi.ddf.EscherRecordFactory
-
Create a new escher record from the data provided.
- createRecord(RecordInputStream) - Static method in class loci.poi.hssf.eventmodel.EventRecordFactory
-
create a record, if there are MUL records than multiple records
are returned digested into the non-mul form.
- createRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.RecordFactory
-
Deprecated.
- createRecords(InputStream, boolean) - Static method in class loci.poi.hssf.dev.BiffViewer
-
Create an array of records from an input stream
- createRecords(InputStream) - Static method in class loci.poi.hssf.record.RecordFactory
-
Deprecated.
Create an array of records from an input stream
- createRefMode() - Method in class loci.poi.hssf.model.Sheet
-
creates the RefMode record and sets it to A1 Mode (default reference mode)
- createRefreshAll() - Method in class loci.poi.hssf.model.Workbook
-
creates the RefreshAll record with refreshAll set to true.
- createROIDeScaler(CBlkQuantDataSrcDec, J2KImageReadParamJava, DecoderSpecs) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Creates and returns the ROIDeScaler corresponding to the information
read from the codestream header and with the special additional
parameters from the parameter list.
- createRoot() - Method in class ome.xml.meta.AggregateMetadata
-
- createRoot() - Method in class ome.xml.meta.DummyMetadata
-
- createRoot() - Method in class ome.xml.meta.FilterMetadata
-
- createRoot() - Method in interface ome.xml.meta.MetadataStore
-
- createRoot() - Method in class ome.xml.meta.OMEXMLMetadataImpl
-
- createRow(int) - Method in class loci.poi.hssf.model.Sheet
-
Create a row record.
- createRow(int) - Static method in class loci.poi.hssf.record.aggregates.RowRecordsAggregate
-
Create a row record.
- createRow(int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
Create a new row within the sheet and return the high level representation
- createSaveRecalc() - Method in class loci.poi.hssf.model.Sheet
-
creates the SaveRecalc record and sets it to true (recalculate before saving)
- createScenarioProtect() - Method in class loci.poi.hssf.model.Sheet
-
creates a ScenarioProtect record with protect set to false.
- createSelection() - Method in class loci.poi.hssf.model.Sheet
-
Creates the Selection record and sets it to nothing selected
- createShape(HSSFShape, int) - Static method in class loci.poi.hssf.model.AbstractShape
-
Create a new shape object used to create the escher records.
- createShape(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
-
Create a new simple shape under this group.
- createSheet(List, int, int) - Static method in class loci.poi.hssf.model.Sheet
-
read support (offset used as starting point for search) for low level
API.
- createSheet(List, int) - Static method in class loci.poi.hssf.model.Sheet
-
read support (offset = 0) Same as createSheet(Record[] recs, int, int)
only the record offset is assumed to be 0.
- createSheet() - Static method in class loci.poi.hssf.model.Sheet
-
Creates a sheet with all the usual records minus values and the "index"
record (not required).
- createSheet() - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns
the high level representation.
- createSheet(String) - Method in class loci.poi.hssf.usermodel.HSSFWorkbook
-
create an HSSFSheet for this HSSFWorkbook, adds it to the sheets and returns
the high level representation.
- createSimpleShape(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
-
Creates a simple shape.
- createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.model.Sheet
-
Creates a split pane.
- createSplitPane(int, int, int, int, int) - Method in class loci.poi.hssf.usermodel.HSSFSheet
-
Creates a split pane.
- createSST() - Method in class loci.poi.hssf.model.Workbook
-
Creates the SST record with no strings and the unique/num string set to 0
- createStack(List<ImageProcessor>, List<String>, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader
-
Creates an image stack from the given image processors.
- createStyle(int) - Method in class loci.poi.hssf.model.Workbook
-
Creates a StyleRecord object
- createSubRecord(RecordInputStream) - Static method in class loci.poi.hssf.record.SubRecord
-
- createTabId() - Method in class loci.poi.hssf.model.Workbook
-
creates the TabId record containing an array of 0,1,2.
- createTempFile(String, String) - Static method in class loci.poi.util.TempFile
-
Creates a temporary file.
- createTextbox(HSSFClientAnchor) - Method in class loci.poi.hssf.usermodel.HSSFPatriarch
-
Constructs a textbox under the patriarch.
- createTextbox(HSSFChildAnchor) - Method in class loci.poi.hssf.usermodel.HSSFShapeGroup
-
Create a new textbox under this group.
- createUseSelFS() - Method in class loci.poi.hssf.model.Workbook
-
Creates the UseSelFS object with the use natural language flag set to 0 (false)
- createVCenter() - Method in class loci.poi.hssf.model.Sheet
-
creates the VCenter Record and sets it to false (don't horizontally center)
- createWindowOne() - Method in class loci.poi.hssf.model.Workbook
-
creates the WindowOne record with the following magic values:
- createWindowProtect() - Method in class loci.poi.hssf.model.Workbook
-
creates the WindowProtect record with protect set to false.
- createWindowTwo() - Method in class loci.poi.hssf.model.Sheet
-
creates the WindowTwo Record and sets it to:
- createWorkbook(List) - Static method in class loci.poi.hssf.model.Workbook
-
read support for low level
API.
- createWorkbook() - Static method in class loci.poi.hssf.model.Workbook
-
Creates an empty workbook object with three blank sheets and all the empty
fields.
- createWriteAccess() - Method in class loci.poi.hssf.model.Workbook
-
creates the WriteAccess record containing the logged in user's name
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- createWriterInstance(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- createWSBool() - Method in class loci.poi.hssf.model.Sheet
-
creates the WSBoolRecord and sets its values to defaults
- createXBATBlocks(int[], int, int) - Static method in class loci.poi.poifs.storage.BATBlock
-
Create an array of XBATBlocks from an array of int block
allocation table entries
- crg - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the CRG marker segment found in main header
- CRG - Static variable in interface jj2000.j2k.codestream.Markers
-
Component registration (CRG): 0xFF63
- CRG_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for CRG marker segment found
- crgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
-
- crop() - Method in class loci.plugins.util.RecordedImageProcessor
-
- cropBox - Variable in class loci.plugins.in.MainDialog
-
- CropDialog - Class in loci.plugins.in
-
Bio-Formats Importer crop options dialog box.
- CropDialog(ImportProcess) - Constructor for class loci.plugins.in.CropDialog
-
Creates a crop options dialog for the Bio-Formats Importer.
- crossChan - Variable in class loci.formats.in.SDTInfo
-
Cross FCS routing channel number
when chan = crossChan and mod == crossMod - Auto FCS
otherwise - Cross FCS.
- CrosshairStrategy - Class in loci.formats.cache
-
A crosshair strategy caches planes extending from the the current
dimensional position along each individual axis, but not combinations of
axes.
- CrosshairStrategy(int[]) - Constructor for class loci.formats.cache.CrosshairStrategy
-
Constructs a crosshair strategy.
- crossMod - Variable in class loci.formats.in.SDTInfo
-
Cross FCS module number.
- crossMtResol - Variable in class loci.formats.in.SDTInfo
-
Macro time clock of cross FCS module in 0.1 ns units.
- cs - Variable in class jj2000.j2k.entropy.Progression
-
Component index for the start of a progression
- CS_2C - Static variable in class loci.formats.gui.TwoChannelColorSpace
-
- CSB_APPROX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_ENUM_GREY - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_ENUM_SRGB - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_ENUM_YCC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- CSB_METH - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
Colour Specification Box Fields
- CSB_PREC - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- cScroll - Variable in class loci.plugins.util.DataBrowser
-
- csiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- cSlider - Variable in class loci.formats.gui.ImageViewer
-
- cSliders - Variable in class loci.plugins.util.DataBrowser
-
- cspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- css - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Causal stripes specifications
- CSV_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- ctp - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
-
The cumulative number of truncation points
- cts - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
The component transformation specifications
- ctX - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The current tile horizontal index
- ctY - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The current tile vertical index
- cTypes - Variable in class loci.formats.CoreMetadata
-
- culx - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The horizontal coordinates of the upper-left corner of the active
tile, with respect to the canvas origin, in the component hi-res grid,
for each component.
- culy - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The vertical coordinates of the upper-left corner of the active tile,
with respect to the canvas origin, in the component hi-res grid, for
each component.
- cur_pg - Variable in class mdbtools.libmdb.MdbHandle
-
- cur_pg_num - Variable in class mdbtools.libmdb.MdbTableDef
-
- cur_phys_pg - Variable in class mdbtools.libmdb.MdbTableDef
-
- cur_pos - Variable in class mdbtools.libmdb.MdbHandle
-
- cur_row - Variable in class mdbtools.libmdb.MdbTableDef
-
- cur_value_len - Variable in class mdbtools.libmdb.MdbColumn
-
- cur_value_start - Variable in class mdbtools.libmdb.MdbColumn
-
- curCycle - Variable in class loci.formats.in.SDTInfo
-
Current cycle (accumulation cycle in FLOW mode) -
(if multi-cycle measurement).
- curPage - Variable in class loci.formats.in.SDTInfo
-
Current measured page.
- current - Variable in class loci.formats.ImageWriter
-
Current form index.
- currentId - Variable in class loci.formats.FormatHandler
-
Name of current file.
- currentId - Variable in class loci.formats.ImageWriter
-
Name of current file.
- currentLength - Variable in class loci.poi.hssf.record.RecordInputStream
-
- currentPos - Variable in class loci.formats.cache.Cache
-
Current dimensional position.
- currentRow - Variable in class mdbtools.dbengine.MemoryData
-
- currentSid - Variable in class loci.poi.hssf.record.RecordInputStream
-
- currLevel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- currSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- curStep - Variable in class loci.formats.in.SDTInfo
-
Current step (if multi-step measurement).
- curve - Variable in class loci.formats.codec.NikonCodecOptions
-
- CURVES - Static variable in class loci.poi.ddf.EscherShapePathProperty
-
- CUSTOM - Static variable in interface jj2000.j2k.wavelet.FilterTypes
-
User-defined filter: -1
- CUSTOM_RENDERED - Static variable in class loci.formats.tiff.IFD
-
- CUSTOM_RENDERED_CUSTOM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "CustomRendered" tag.
- CUSTOM_RENDERED_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "CustomRendered" tag.
- CustomField - Interface in loci.poi.hssf.record
-
- CustomProperties - Class in loci.poi.hpsf
-
- CustomProperties() - Constructor for class loci.poi.hpsf.CustomProperties
-
- CustomProperty - Class in loci.poi.hpsf
-
This class represents custum properties in the document summary
information stream.
- CustomProperty() - Constructor for class loci.poi.hpsf.CustomProperty
-
- CustomProperty(Property) - Constructor for class loci.poi.hpsf.CustomProperty
-
- CustomProperty(Property, String) - Constructor for class loci.poi.hpsf.CustomProperty
-
- cycles - Variable in class loci.formats.in.SDTInfo
-
Cycles (accumulation cycles in FLOW mode).
- DAILY_BUILD - Static variable in class loci.formats.UpgradeChecker
-
Location of the JAR artifacts for Bio-Formats' daily build.
- DASH_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- DASH_DOT_DOT - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- DASHED - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- data - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
- data - Variable in class jj2000.j2k.entropy.CodedCBlk
-
The compressed data
- data - Variable in class jj2000.j2k.image.DataBlkFloat
-
The array where the data is stored
- data - Variable in class jj2000.j2k.image.DataBlkInt
-
The array where the data is stored
- data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
The array where the data is stored
- data - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
The array where the data is stored
- data - Variable in class loci.poi.hssf.record.RecordInputStream
-
- Data - Interface in mdbtools.dbengine
-
Data represents a set of rows containing data
- Data - Class in mdbtools.libmdb
-
- Data() - Constructor for class mdbtools.libmdb.Data
-
- DATA_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo
-
For normal .sdt files (setup + data).
- DATA_LABEL_PLACEMENT_ABOVE - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_AUTO - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_AXIS - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_BELOW - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_CENTER - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_CHART_DEPENDENT - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_INSIDE - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_LEFT - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_OUTSIDE - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_RIGHT - Static variable in class loci.poi.hssf.record.TextRecord
-
- DATA_LABEL_PLACEMENT_USER_MOVED - Static variable in class loci.poi.hssf.record.TextRecord
-
- DataBlk - Class in jj2000.j2k.image
-
This is a generic abstract class to store data from a block of an
image.
- DataBlk() - Constructor for class jj2000.j2k.image.DataBlk
-
- DataBlkFloat - Class in jj2000.j2k.image
-
This is an implementation of the DataBlk interface for
32 bit floating point data (float).
- DataBlkFloat() - Constructor for class jj2000.j2k.image.DataBlkFloat
-
Creates a DataBlkFloat with 0 dimensions and no data array
(i.e.
- DataBlkFloat(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkFloat
-
Creates a DataBlkFloat with the specified dimensions and
position.
- DataBlkFloat(DataBlkFloat) - Constructor for class jj2000.j2k.image.DataBlkFloat
-
Copy constructor.
- DataBlkInt - Class in jj2000.j2k.image
-
This is an implementation of the DataBlk interface for
signed 32 bit integral data.
- DataBlkInt() - Constructor for class jj2000.j2k.image.DataBlkInt
-
Creates a DataBlkInt with 0 dimensions and no data array
(i.e.
- DataBlkInt(int, int, int, int) - Constructor for class jj2000.j2k.image.DataBlkInt
-
Creates a DataBlkInt with the specified dimensions and
position.
- DataBlkInt(DataBlkInt) - Constructor for class jj2000.j2k.image.DataBlkInt
-
Copy constructor.
- dataBlockLength - Variable in class loci.formats.in.SDTInfo
-
- dataBlockOffs - Variable in class loci.formats.in.SDTInfo
-
Offset of the first data block.
- DataBrowser - Class in loci.plugins.util
-
Extension of StackWindow with additional UI trimmings for animation,
virtual stack caching options, metadata, and general beautification.
- DataBrowser(ImagePlus) - Constructor for class loci.plugins.util.DataBrowser
-
- DataBrowser(ImagePlus, ImageCanvas, String[], int[]) - Constructor for class loci.plugins.util.DataBrowser
-
- DataBrowser(ImagePlus, ImageCanvas, String[], int[], XMLWindow) - Constructor for class loci.plugins.util.DataBrowser
-
- DataConverter - Class in loci.formats.gui
-
A utility for reorganizing and converting QuickTime movies,
TIFF series and other 4D datasets.
- DataConverter() - Constructor for class loci.formats.gui.DataConverter
-
- DataEntryURLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Data Entry URL Box of JPEG JP2
file format.
- DataEntryURLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Constructs a DataEntryURLBox
from its content data.
- DataEntryURLBox(byte, byte[], String) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Constructs a DataEntryURLBox
from its data elements.
- DataEntryURLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
Constructs a DataEntryURLBox
from a Node.
- DataFormatRecord - Class in loci.poi.hssf.record
-
The data format record is used to index into a series.
- DataFormatRecord() - Constructor for class loci.poi.hssf.record.DataFormatRecord
-
- DataFormatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DataFormatRecord
-
Constructs a DataFormat record and sets its fields appropriately.
- dataOffs - Variable in class loci.formats.in.SDTInfo
-
Offset of the data block from the beginning of the file.
- Dataset - Class in ome.xml.model
-
- Dataset() - Constructor for class ome.xml.model.Dataset
-
Default constructor.
- Dataset(Element, OMEModel) - Constructor for class ome.xml.model.Dataset
-
Constructs Dataset recursively from an XML DOM tree.
- Dataset(Dataset) - Constructor for class ome.xml.model.Dataset
-
Copy constructor.
- datasetDescription - Variable in class loci.formats.FormatReader
-
Short description of the structure of the dataset.
- DatasetRef - Class in ome.xml.model
-
- DatasetRef() - Constructor for class ome.xml.model.DatasetRef
-
Default constructor.
- DatasetRef(Element, OMEModel) - Constructor for class ome.xml.model.DatasetRef
-
Constructs DatasetRef recursively from an XML DOM tree.
- DatasetRef(DatasetRef) - Constructor for class ome.xml.model.DatasetRef
-
Copy constructor.
- DataSource - Interface in mdbtools.dbengine
-
DataSource represents the data store.
- DataTools - Class in loci.common
-
A utility class with convenience methods for
reading, writing and decoding words.
- DATATYPE_INT16 - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_INT32 - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_INT8 - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_REAL32 - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_REAL64 - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_UINT16 - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_UINT32 - Static variable in class loci.formats.in.LiFlimReader
-
- DATATYPE_UINT8 - Static variable in class loci.formats.in.LiFlimReader
-
- DATE - Static variable in class loci.formats.FormatTools
-
Date on which this release was built.
- date - Variable in class loci.formats.in.SDTInfo
-
Date of creation.
- date() - Static method in class loci.poi.hssf.usermodel.HSSFFooter
-
Returns the string representing the current date
- date() - Static method in class loci.poi.hssf.usermodel.HSSFHeader
-
Returns the string representing the current date
- DATE_FORMAT - Static variable in class loci.formats.in.DeltavisionReader
-
- DATE_FORMAT - Static variable in class loci.formats.in.FV1000Reader
-
- DATE_FORMAT - Static variable in class loci.formats.in.GelReader
-
- DATE_FORMAT - Static variable in class loci.formats.in.IvisionReader
-
- DATE_FORMAT - Static variable in class loci.formats.in.L2DReader
-
- DATE_FORMAT - Static variable in class loci.formats.in.MicromanagerReader
-
- DATE_FORMAT - Static variable in class loci.formats.in.PerkinElmerReader
-
- DATE_FORMAT - Static variable in class loci.formats.in.TCSReader
-
- DATE_FORMATS - Static variable in class loci.formats.in.BaseTiffReader
-
- DATE_FORMATS - Static variable in class loci.formats.in.ICSReader
-
- DATE_TIME - Static variable in class loci.formats.tiff.IFD
-
- DATE_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD
-
- DATE_TIME_FORMAT - Static variable in class loci.formats.in.GelReader
-
- DATE_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD
-
- dateToFileTime(Date) - Static method in class loci.poi.hpsf.Util
-
Converts a
Date
into a filetime.
- DateTools - Class in loci.common
-
A utility class with convenience methods for working with dates.
- DateWindow1904Record - Class in loci.poi.hssf.record
-
Title: Date Window 1904 Flag record
- DateWindow1904Record() - Constructor for class loci.poi.hssf.record.DateWindow1904Record
-
- DateWindow1904Record(RecordInputStream) - Constructor for class loci.poi.hssf.record.DateWindow1904Record
-
Constructs a DateWindow1904 record and sets its fields appropriately.
- DatRecord - Class in loci.poi.hssf.record
-
The dat record is used to store options for the chart.
- DatRecord() - Constructor for class loci.poi.hssf.record.DatRecord
-
- DatRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DatRecord
-
Constructs a Dat record and sets its fields appropriately.
- db_passwd - Variable in class mdbtools.libmdb.MdbFile
-
- DBCELL_CAPACITY - Static variable in class loci.poi.hssf.record.IndexRecord
-
- DBCellRecord - Class in loci.poi.hssf.record
-
Title: DBCell Record
Description: Used by Excel and other MS apps to quickly find rows in the sheets.
- DBCellRecord() - Constructor for class loci.poi.hssf.record.DBCellRecord
-
- DBCellRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DBCellRecord
-
Constructs a DBCellRecord and sets its fields appropriately
- DC_OFFSET - Static variable in class jj2000.j2k.image.input.ImgReaderPGM
-
DC offset value used when reading image
- deadTimeComp - Variable in class loci.formats.in.SDTInfo
-
- debug(String) - Static method in class loci.plugins.BF
-
- DEBUG - Static variable in class loci.poi.util.POILogger
-
- DebugTools - Class in loci.common
-
A utility class with convenience methods for debugging.
- DEC_SPEC_COMP_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
-
The identifier for "component default" specified decomposition
- DEC_SPEC_MAIN_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
-
The identifier for "main default" specified decomposition
- DEC_SPEC_TILE_COMP - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
-
The identifier for "tile and component specific" specified
decomposition
- DEC_SPEC_TILE_DEF - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
-
The identifier for "tile specific default" specified decomposition
- DecLyrdCBlk - Class in jj2000.j2k.entropy.decoder
-
This class stores coded (compressed) code-blocks that are organized
in layers.
- DecLyrdCBlk() - Constructor for class jj2000.j2k.entropy.decoder.DecLyrdCBlk
-
- decode() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Decodes the input bit stream (located in the
ImageInputStream
stream
, at offset
offset
, and continuing for byteCount
bytes) into the output BufferedImage
image
.
- decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- decode(byte[], int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- decode() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
-
- decode(byte[], int, byte[], int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor
-
- decode(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil
-
- decode() - Method in class loci.poi.hssf.record.AbstractEscherHolderRecord
-
Convert raw data to escher records.
- decodeDate(int) - Static method in class loci.formats.in.MetamorphReader
-
Converts a Julian date value into a human-readable string.
- decodeNextScanline(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- decodeNumber(int) - Static method in class loci.poi.hssf.util.RKUtil
-
Do the dirty work of decoding; made a private static method to
facilitate testing the algorithm
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Decodes the source data into the provided byte
array b
, starting at the offset given by
dstOffset
.
- decodeRaw(short[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Decodes the source data into the provided short
array s
, starting at the offset given by
dstOffset
.
- decodeRaw(int[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Decodes the source data into the provided int
array i
, starting at the offset given by
dstOffset
.
- decodeRaw(float[], int, int, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Decodes the source data into the provided float
array f
, starting at the offset given by
dstOffset
.
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor
-
- decodeRaw(byte[], int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- decodeRLE() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- DecoderSpecs - Class in jj2000.j2k.decoder
-
This class holds references to each module specifications used in the
decoding chain.
- DecoderSpecs(int, int) - Constructor for class jj2000.j2k.decoder.DecoderSpecs
-
Initialize all members with the given number of tiles and components.
- decodeSymbol(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Arithmetically decodes one symbol from the bit stream with the given
context and returns its decoded value.
- decodeSymbols(int[], int[], int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
This function performs the arithmetic decoding.
- decodeT4() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- decodeT6() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- decodeTime(int) - Static method in class loci.formats.in.MetamorphReader
-
Converts a time value in milliseconds into a human-readable string.
- decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class com.luratech.lwf.lwfDecoder
-
- decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in interface loci.formats.services.LuraWaveService
-
Wraps
lwfDecoder.decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int)
.
- decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl
-
- decodeToMemoryGray8(byte[], int, int, int) - Method in class com.luratech.lwf.lwfDecoder
-
- decodeToMemoryGray8(byte[], int, int, int) - Method in interface loci.formats.services.LuraWaveService
-
- decodeToMemoryGray8(byte[], int, int, int) - Method in class loci.formats.services.LuraWaveServiceImpl
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.Base64Codec
-
- decompress(byte[]) - Method in class loci.formats.codec.BaseCodec
-
- decompress(byte[][]) - Method in class loci.formats.codec.BaseCodec
-
- decompress(byte[], CodecOptions) - Method in class loci.formats.codec.BaseCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.BaseCodec
-
- decompress(byte[][], CodecOptions) - Method in class loci.formats.codec.BaseCodec
-
2D data block decoding default implementation.
- decompress(byte[], CodecOptions) - Method in interface loci.formats.codec.Codec
-
Decompresses a block of data.
- decompress(byte[][], CodecOptions) - Method in interface loci.formats.codec.Codec
-
Decompresses a block of data.
- decompress(byte[]) - Method in interface loci.formats.codec.Codec
-
Decompresses a block of data.
- decompress(byte[][]) - Method in interface loci.formats.codec.Codec
-
Decompresses a block of data.
- decompress(RandomAccessInputStream, CodecOptions) - Method in interface loci.formats.codec.Codec
-
Decompresses data from the given RandomAccessInputStream.
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.HuffmanCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec
-
- decompress(byte[], CodecOptions) - Method in class loci.formats.codec.JPEG2000Codec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.JPEGCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LosslessJPEGCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
-
- decompress(byte[], CodecOptions) - Method in class loci.formats.codec.LuraWaveCodec
-
The CodecOptions parameter should have the following fields set:
maxBytes
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZOCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.LZWCodec
-
The CodecOptions parameter should have the following fields set:
maxBytes
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MJPBCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSRLECodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.MSVideoCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.NikonCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PackbitsCodec
-
The CodecOptions parameter should have the following fields set:
maxBytes
- decompress(byte[], CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.PassthroughCodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.QTRLECodec
-
- decompress(byte[], CodecOptions) - Method in class loci.formats.codec.QTRLECodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.RPZACodec
-
The CodecOptions parameter should have the following fields set:
width
height
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.TargaRLECodec
-
- decompress(RandomAccessInputStream, CodecOptions) - Method in class loci.formats.codec.ZlibCodec
-
- decompress(byte[], CodecOptions) - Method in enum loci.formats.tiff.TiffCompression
-
Decodes a strip of data.
- decompress(byte[], int, int) - Static method in class loci.poi.ddf.EscherBlipWMFRecord
-
Decompresses a byte array.
- decSpec - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The decoder specifications
- decSpec - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
The decoder specifications
- def - Variable in class jj2000.j2k.ModuleSpec
-
Default value for each tile-component
- DEF_BUF_LEN - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
The default buffer length, 1024 bytes
- DEF_THREADS_NUM - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The default value for the property in THREADS_PROP_NAME: 0
- default_backend - Variable in class mdbtools.libmdb.MdbFile
-
- default_backend - Variable in class mdbtools.libmdb.MdbHandle
-
- DEFAULT_BLOCK_SIZE - Static variable in class loci.common.NIOInputStream
-
Block size to use when searching through the stream.
- DEFAULT_BLOCK_SIZE - Static variable in class loci.common.RandomAccessInputStream
-
Block size to use when searching through the stream.
- DEFAULT_BUCKET_SIZE - Static variable in class loci.poi.hssf.record.ExtSSTRecord
-
- DEFAULT_BYTES_PER_STRIP - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- DEFAULT_CALLER - Static variable in class loci.formats.UpgradeChecker
-
Value of "bioformats.caller" for Bio-Formats utilities.
- DEFAULT_CHARSET - Static variable in class loci.poi.hssf.usermodel.HSSFFont
-
Default character set.
- DEFAULT_DIMENSION_ORDER - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_DISPLAY_RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- DEFAULT_HEADER - Static variable in class loci.common.IniTable
-
Default header name when no header is available.
- DEFAULT_MINIMUM_ELAPSED - Static variable in class loci.formats.Memoizer
-
- DEFAULT_PIXEL_TYPE - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_RANGE - Static variable in class loci.formats.cache.CacheStrategy
-
Default cache range.
- DEFAULT_RGB_CHANNEL_COUNT - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_SIZE_C - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_SIZE_T - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_SIZE_X - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_SIZE_Y - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_SIZE_Z - Static variable in class loci.formats.in.FakeReader
-
- DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.DocumentSummaryInformation
-
The document name a document summary information stream
usually has in a POIFS filesystem.
- DEFAULT_STREAM_NAME - Static variable in class loci.poi.hpsf.SummaryInformation
-
The document name a summary information stream usually has in a POIFS
filesystem.
- DEFAULT_VALUE - Static variable in class loci.poi.hssf.record.DeltaRecord
-
- defaultBufferSize - Static variable in class loci.common.NIOFileHandle
-
Default NIO buffer size to facilitate buffered I/O.
- defaultcolwidth - Variable in class loci.poi.hssf.model.Sheet
-
- DefaultColWidthRecord - Class in loci.poi.hssf.record
-
Title: Default Column Width Record
- DefaultColWidthRecord() - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord
-
- DefaultColWidthRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultColWidthRecord
-
Constructs a DefaultColumnWidth record and sets its fields appropriately.
- DefaultDataLabelTextPropertiesRecord - Class in loci.poi.hssf.record
-
The default data label text properties record identifies the text characteristics of the preceeding text record.
- DefaultDataLabelTextPropertiesRecord() - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
- DefaultDataLabelTextPropertiesRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultDataLabelTextPropertiesRecord
-
Constructs a DefaultDataLabelTextProperties record and sets its fields appropriately.
- DefaultEscherRecordFactory - Class in loci.poi.ddf
-
Generates escher records when provided the byte array containing those records.
- DefaultEscherRecordFactory() - Constructor for class loci.poi.ddf.DefaultEscherRecordFactory
-
Creates an instance of the escher record factory
- DefaultMetadataOptions - Class in loci.formats.in
-
- DefaultMetadataOptions() - Constructor for class loci.formats.in.DefaultMetadataOptions
-
- DefaultMetadataOptions(MetadataLevel) - Constructor for class loci.formats.in.DefaultMetadataOptions
-
- defaultMinMax(int) - Static method in class loci.formats.FormatTools
-
Get the default range for the specified pixel type.
- defaultrowheight - Variable in class loci.poi.hssf.model.Sheet
-
- DefaultRowHeightRecord - Class in loci.poi.hssf.record
-
Title: Default Row Height Record
Description: Row height for rows with undefined or not explicitly defined
heights.
- DefaultRowHeightRecord() - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord
-
- DefaultRowHeightRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DefaultRowHeightRecord
-
Constructs a DefaultRowHeight record and sets its fields appropriately.
- defaultRWBufferSize - Static variable in class loci.common.NIOFileHandle
-
Default NIO buffer size to facilitate buffered I/O for read/write streams.
- defaultValue - Variable in class loci.plugins.prefs.BooleanOption
-
The option's default value.
- defaultValue - Variable in class loci.plugins.prefs.DoubleOption
-
The option's default value.
- defaultValue - Variable in class loci.plugins.prefs.StringOption
-
The option's default value.
- delayTime - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- DelegateReader - Class in loci.formats
-
DelegateReader is a file format reader that selects which reader to use
for a format if there are two readers which handle the same format.
- DelegateReader(String, String) - Constructor for class loci.formats.DelegateReader
-
Constructs a new delegate reader.
- DelegateReader(String, String[]) - Constructor for class loci.formats.DelegateReader
-
Constructs a new delegate reader.
- delete() - Method in class loci.common.Location
-
Deletes this file.
- delete() - Method in interface loci.poi.poifs.filesystem.Entry
-
Delete this Entry.
- delete() - Method in class loci.poi.poifs.filesystem.EntryNode
-
Delete this Entry.
- deleteChild(Property) - Method in class loci.poi.poifs.property.DirectoryProperty
-
Delete a Property
- DeletedArea3DPtg - Class in loci.poi.hssf.record.formula
-
Title: Deleted Area 3D Ptg - 3D referecnce (Sheet + Area)
- DeletedArea3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg
-
Creates new DeletedArea3DPtg
- DeletedArea3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedArea3DPtg
-
- deleteData(String) - Method in class loci.tests.IOTester
-
- DeletedRef3DPtg - Class in loci.poi.hssf.record.formula
-
Title: Deleted Reference 3D Ptg
- DeletedRef3DPtg(RecordInputStream) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg
-
Creates new DeletedRef3DPtg
- DeletedRef3DPtg(String, short) - Constructor for class loci.poi.hssf.record.formula.DeletedRef3DPtg
-
- deleteOnExit() - Method in class loci.common.Location
-
Request that this file be deleted when the JVM terminates.
- DELTA - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
The value of the fourth lifting step coefficient
- DELTA - Static variable in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
The value of the fourth lifting step coefficient
- DeltaRecord - Class in loci.poi.hssf.record
-
Title: Delta Record
- DeltaRecord() - Constructor for class loci.poi.hssf.record.DeltaRecord
-
- DeltaRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DeltaRecord
-
Constructs a Delta record and sets its fields appropriately.
- DeltavisionReader - Class in loci.formats.in
-
DeltavisionReader is the file format reader for Deltavision files.
- DeltavisionReader() - Constructor for class loci.formats.in.DeltavisionReader
-
Constructs a new Deltavision reader.
- denom - Variable in class loci.formats.tiff.TiffRational
-
Components of the rational's fractional representation.
- DependencyException - Exception in loci.common.services
-
Exception thrown when there is an object instantiation error or error
processing dependencies.
- DependencyException(String) - Constructor for exception loci.common.services.DependencyException
-
Default constructor.
- DependencyException(String, Class<? extends Service>) - Constructor for exception loci.common.services.DependencyException
-
Default constructor.
- DependencyException(String, Class<? extends Service>, Throwable) - Constructor for exception loci.common.services.DependencyException
-
Default constructor.
- DependencyException(Throwable) - Constructor for exception loci.common.services.DependencyException
-
Default constructor.
- depth - Variable in class loci.formats.tools.AmiraParameters
-
- Dequantizer - Class in jj2000.j2k.quantization.dequantizer
-
This is the abstract class from which all dequantizers must inherit.
- Dequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Initializes the source of compressed data.
- DequantizerParams - Class in jj2000.j2k.quantization.dequantizer
-
This is the generic ineterface for dequantization parameters.
- DequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.DequantizerParams
-
- derived - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Whether or not the components in the current tile uses a derived
quantization step size (only relevant in non reversible quantization
mode).
- DEST_DISTANCE_REF_KILOMETERS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSDestDistanceRef" tag.
- DEST_DISTANCE_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSDestDistanceRef" tag.
- DEST_DISTANCE_REF_MILES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSDestDistanceRef" tag.
- destinationBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The sequence of destination bands to receive the source data.
- Detector - Class in ome.xml.model
-
- Detector() - Constructor for class ome.xml.model.Detector
-
Default constructor.
- Detector(Element, OMEModel) - Constructor for class ome.xml.model.Detector
-
Constructs Detector recursively from an XML DOM tree.
- Detector(Detector) - Constructor for class ome.xml.model.Detector
-
Copy constructor.
- detectorGain - Variable in class loci.formats.in.BaseZeissReader
-
- detectorOffset - Variable in class loci.formats.in.BaseZeissReader
-
- DetectorSettings - Class in ome.xml.model
-
- DetectorSettings() - Constructor for class ome.xml.model.DetectorSettings
-
Default constructor.
- DetectorSettings(Element, OMEModel) - Constructor for class ome.xml.model.DetectorSettings
-
Constructs DetectorSettings recursively from an XML DOM tree.
- DetectorSettings(DetectorSettings) - Constructor for class ome.xml.model.DetectorSettings
-
Copy constructor.
- DetectorType - Enum in ome.xml.model.enums
-
- DetectorTypeEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for DetectorType.
- DetectorTypeEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DetectorTypeEnumHandler
-
- detType - Variable in class loci.formats.in.SDTInfo
-
Detector type (SPC-930 in camera mode).
- DG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
-
- DGG_CONTAINER - Static variable in class loci.poi.ddf.EscherContainerRecord
-
- DIAMONDS - Static variable in class loci.poi.hssf.record.ExtendedFormatRecord
-
- DIAMONDS - Static variable in class loci.poi.hssf.usermodel.HSSFCellStyle
-
Diamonds
- Dichroic - Class in ome.xml.model
-
- Dichroic() - Constructor for class ome.xml.model.Dichroic
-
Default constructor.
- Dichroic(Element, OMEModel) - Constructor for class ome.xml.model.Dichroic
-
Constructs Dichroic recursively from an XML DOM tree.
- Dichroic(Dichroic) - Constructor for class ome.xml.model.Dichroic
-
Copy constructor.
- DichroicRef - Class in ome.xml.model
-
- DichroicRef() - Constructor for class ome.xml.model.DichroicRef
-
Default constructor.
- DichroicRef(Element, OMEModel) - Constructor for class ome.xml.model.DichroicRef
-
Constructs DichroicRef recursively from an XML DOM tree.
- DichroicRef(DichroicRef) - Constructor for class ome.xml.model.DichroicRef
-
Copy constructor.
- DICOM_MAGIC_STRING - Static variable in class loci.formats.in.DicomReader
-
- DicomReader - Class in loci.formats.in
-
DicomReader is the file format reader for DICOM files.
- DicomReader() - Constructor for class loci.formats.in.DicomReader
-
Constructs a new DICOM reader.
- dictionary - Variable in class loci.poi.hpsf.Section
-
Maps property IDs to section-private PID strings.
- difference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression
-
Performs in-place differencing according to the given predictor value.
- DIFFERENTIAL_CORRECTION_APPLIED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSDifferential" tag.
- DIFFERENTIAL_CORRECTION_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSDifferential" tag.
- DIGITAL_ZOOM_RATIO - Static variable in class loci.formats.tiff.IFD
-
- dilate() - Method in class loci.plugins.util.RecordedImageProcessor
-
- dimensionOrder - Variable in class loci.formats.CoreMetadata
-
Order in which dimensions are stored.
- DimensionOrder - Enum in ome.xml.model.enums
-
- DimensionOrderEnumHandler - Class in ome.xml.model.enums.handlers
-
Enumeration handler for DimensionOrder.
- DimensionOrderEnumHandler() - Constructor for class ome.xml.model.enums.handlers.DimensionOrderEnumHandler
-
- DimensionsRecord - Class in loci.poi.hssf.record
-
Title: Dimensions Record
- DimensionsRecord() - Constructor for class loci.poi.hssf.record.DimensionsRecord
-
- DimensionsRecord(RecordInputStream) - Constructor for class loci.poi.hssf.record.DimensionsRecord
-
Constructs a Dimensions record and sets its fields appropriately.
- DimensionSwapper - Class in loci.formats
-
Handles swapping the dimension order of an image series.
- DimensionSwapper() - Constructor for class loci.formats.DimensionSwapper
-
Constructs a DimensionSwapper around a new image reader.
- DimensionSwapper(IFormatReader) - Constructor for class loci.formats.DimensionSwapper
-
Constructs a DimensionSwapper with the given reader.
- dimOrder - Variable in class loci.formats.AxisGuesser
-
Original ordering of internal dimensional axes.
- dims - Variable in class loci.poi.hssf.model.Sheet
-
- dimsloc - Variable in class loci.poi.hssf.model.Sheet
-
- DIRECTION_REF_MAGNETIC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSTrackRef", "GPSImgDirectionRef",
and "GPSDestBearingRef" tags.
- DIRECTION_REF_TRUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSTrackRef", "GPSImgDirectionRef",
and "GPSDestBearingRef" tags.
- DIRECTORY_TYPE - Static variable in interface loci.poi.poifs.property.PropertyConstants
-
- DirectoryEntry - Interface in loci.poi.poifs.filesystem
-
This interface defines methods specific to Directory objects
managed by a Filesystem instance.