AggregateMetadata (Bio-Formats API)

java.lang.Object
- ome.xml.meta.AggregateMetadata

All Implemented Interfaces:

BaseMetadata, IMetadata, MetadataRetrieve, MetadataStore
```
public class AggregateMetadata
extends Object
implements IMetadata
```
A metadata store which delegates the actual storage to one or more sub metadata stores.

Author:

Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

Constructor Summary

Constructors
Constructor and Description

AggregateMetadata(List<BaseMetadata> delegates)
Creates a new instance.

Constructors
Constructor and Description
`AggregateMetadata(List<BaseMetadata> delegates)` Creates a new instance.

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`createRoot()`
`String`	`getArcID(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcModel(int instrumentIndex, int lightSourceIndex)`
`Double`	`getArcPower(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcSerialNumber(int instrumentIndex, int lightSourceIndex)`
`ArcType`	`getArcType(int instrumentIndex, int lightSourceIndex)`
`String`	`getBinaryFileFileName(int fileAnnotationIndex)`
`String`	`getBinaryFileMIMEType(int fileAnnotationIndex)`
`NonNegativeLong`	`getBinaryFileSize(int fileAnnotationIndex)`
`String`	`getBinaryOnlyMetadataFile(int metadataFileIndex)`
`String`	`getBinaryOnlyUUID(int UUIDIndex)`
`int`	`getBooleanAnnotationAnnotationCount(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationAnnotationRef(int booleanAnnotationIndex, int annotationRefIndex)`
`String`	`getBooleanAnnotationAnnotator(int booleanAnnotationIndex)`
`int`	`getBooleanAnnotationCount()`
`String`	`getBooleanAnnotationDescription(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationID(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationNamespace(int booleanAnnotationIndex)`
`Boolean`	`getBooleanAnnotationValue(int booleanAnnotationIndex)`
`AcquisitionMode`	`getChannelAcquisitionMode(int imageIndex, int channelIndex)`
`String`	`getChannelAnnotationRef(int imageIndex, int channelIndex, int annotationRefIndex)`
`int`	`getChannelAnnotationRefCount(int imageIndex, int channelIndex)`
`Color`	`getChannelColor(int imageIndex, int channelIndex)`
`ContrastMethod`	`getChannelContrastMethod(int imageIndex, int channelIndex)`
`int`	`getChannelCount(int imageIndex)`
`PositiveInteger`	`getChannelEmissionWavelength(int imageIndex, int channelIndex)`
`PositiveInteger`	`getChannelExcitationWavelength(int imageIndex, int channelIndex)`
`String`	`getChannelFilterSetRef(int imageIndex, int channelIndex)`
`String`	`getChannelFluor(int imageIndex, int channelIndex)`
`String`	`getChannelID(int imageIndex, int channelIndex)`
`IlluminationType`	`getChannelIlluminationType(int imageIndex, int channelIndex)`
`PercentFraction`	`getChannelLightSourceSettingsAttenuation(int imageIndex, int channelIndex)`
`String`	`getChannelLightSourceSettingsID(int imageIndex, int channelIndex)`
`PositiveInteger`	`getChannelLightSourceSettingsWavelength(int imageIndex, int channelIndex)`
`String`	`getChannelName(int imageIndex, int channelIndex)`
`Double`	`getChannelNDFilter(int imageIndex, int channelIndex)`
`Double`	`getChannelPinholeSize(int imageIndex, int channelIndex)`
`Integer`	`getChannelPockelCellSetting(int imageIndex, int channelIndex)`
`PositiveInteger`	`getChannelSamplesPerPixel(int imageIndex, int channelIndex)`
`int`	`getCommentAnnotationAnnotationCount(int commentAnnotationIndex)`
`String`	`getCommentAnnotationAnnotationRef(int commentAnnotationIndex, int annotationRefIndex)`
`String`	`getCommentAnnotationAnnotator(int commentAnnotationIndex)`
`int`	`getCommentAnnotationCount()`
`String`	`getCommentAnnotationDescription(int commentAnnotationIndex)`
`String`	`getCommentAnnotationID(int commentAnnotationIndex)`
`String`	`getCommentAnnotationNamespace(int commentAnnotationIndex)`
`String`	`getCommentAnnotationValue(int commentAnnotationIndex)`
`String`	`getDatasetAnnotationRef(int datasetIndex, int annotationRefIndex)`
`int`	`getDatasetAnnotationRefCount(int datasetIndex)`
`int`	`getDatasetCount()`
`String`	`getDatasetDescription(int datasetIndex)`
`String`	`getDatasetExperimenterGroupRef(int datasetIndex)`
`String`	`getDatasetExperimenterRef(int datasetIndex)`
`String`	`getDatasetID(int datasetIndex)`
`String`	`getDatasetImageRef(int datasetIndex, int imageRefIndex)`
`int`	`getDatasetImageRefCount(int datasetIndex)`
`String`	`getDatasetName(int datasetIndex)`
`int`	`getDatasetRefCount(int projectIndex)`
`Double`	`getDetectorAmplificationGain(int instrumentIndex, int detectorIndex)`
`int`	`getDetectorCount(int instrumentIndex)`
`Double`	`getDetectorGain(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorID(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorLotNumber(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorManufacturer(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorModel(int instrumentIndex, int detectorIndex)`
`Double`	`getDetectorOffset(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorSerialNumber(int instrumentIndex, int detectorIndex)`
`Binning`	`getDetectorSettingsBinning(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsGain(int imageIndex, int channelIndex)`
`String`	`getDetectorSettingsID(int imageIndex, int channelIndex)`
`PositiveInteger`	`getDetectorSettingsIntegration(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsOffset(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsReadOutRate(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsVoltage(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsZoom(int imageIndex, int channelIndex)`
`DetectorType`	`getDetectorType(int instrumentIndex, int detectorIndex)`
`Double`	`getDetectorVoltage(int instrumentIndex, int detectorIndex)`
`Double`	`getDetectorZoom(int instrumentIndex, int detectorIndex)`
`int`	`getDichroicCount(int instrumentIndex)`
`String`	`getDichroicID(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicLotNumber(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicManufacturer(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicModel(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicSerialNumber(int instrumentIndex, int dichroicIndex)`
`int`	`getDoubleAnnotationAnnotationCount(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationAnnotationRef(int doubleAnnotationIndex, int annotationRefIndex)`
`String`	`getDoubleAnnotationAnnotator(int doubleAnnotationIndex)`
`int`	`getDoubleAnnotationCount()`
`String`	`getDoubleAnnotationDescription(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationID(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationNamespace(int doubleAnnotationIndex)`
`Double`	`getDoubleAnnotationValue(int doubleAnnotationIndex)`
`Color`	`getEllipseFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getEllipseFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getEllipseFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getEllipseFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getEllipseFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getEllipseID(int ROIIndex, int shapeIndex)`
`LineCap`	`getEllipseLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getEllipseLocked(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseRadiusX(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseRadiusY(int ROIIndex, int shapeIndex)`
`Color`	`getEllipseStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getEllipseStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getEllipseText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getEllipseTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getEllipseTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getEllipseTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getEllipseTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getEllipseVisible(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseX(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseY(int ROIIndex, int shapeIndex)`
`int`	`getExperimentCount()`
`String`	`getExperimentDescription(int experimentIndex)`
`String`	`getExperimenterAnnotationRef(int experimenterIndex, int annotationRefIndex)`
`int`	`getExperimenterAnnotationRefCount(int experimenterIndex)`
`int`	`getExperimenterCount()`
`String`	`getExperimenterEmail(int experimenterIndex)`
`String`	`getExperimenterFirstName(int experimenterIndex)`
`String`	`getExperimenterGroupAnnotationRef(int experimenterGroupIndex, int annotationRefIndex)`
`int`	`getExperimenterGroupAnnotationRefCount(int experimenterGroupIndex)`
`int`	`getExperimenterGroupCount()`
`String`	`getExperimenterGroupDescription(int experimenterGroupIndex)`
`String`	`getExperimenterGroupExperimenterRef(int experimenterGroupIndex, int experimenterRefIndex)`
`int`	`getExperimenterGroupExperimenterRefCount(int experimenterGroupIndex)`
`String`	`getExperimenterGroupID(int experimenterGroupIndex)`
`String`	`getExperimenterGroupLeader(int experimenterGroupIndex, int leaderIndex)`
`String`	`getExperimenterGroupName(int experimenterGroupIndex)`
`String`	`getExperimenterID(int experimenterIndex)`
`String`	`getExperimenterInstitution(int experimenterIndex)`
`String`	`getExperimenterLastName(int experimenterIndex)`
`String`	`getExperimenterMiddleName(int experimenterIndex)`
`String`	`getExperimenterUserName(int experimenterIndex)`
`String`	`getExperimentExperimenterRef(int experimentIndex)`
`String`	`getExperimentID(int experimentIndex)`
`ExperimentType`	`getExperimentType(int experimentIndex)`
`String`	`getFilamentID(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentModel(int instrumentIndex, int lightSourceIndex)`
`Double`	`getFilamentPower(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentSerialNumber(int instrumentIndex, int lightSourceIndex)`
`FilamentType`	`getFilamentType(int instrumentIndex, int lightSourceIndex)`
`int`	`getFileAnnotationAnnotationCount(int fileAnnotationIndex)`
`String`	`getFileAnnotationAnnotationRef(int fileAnnotationIndex, int annotationRefIndex)`
`String`	`getFileAnnotationAnnotator(int fileAnnotationIndex)`
`int`	`getFileAnnotationCount()`
`String`	`getFileAnnotationDescription(int fileAnnotationIndex)`
`String`	`getFileAnnotationID(int fileAnnotationIndex)`
`String`	`getFileAnnotationNamespace(int fileAnnotationIndex)`
`int`	`getFilterCount(int instrumentIndex)`
`String`	`getFilterFilterWheel(int instrumentIndex, int filterIndex)`
`String`	`getFilterID(int instrumentIndex, int filterIndex)`
`String`	`getFilterLotNumber(int instrumentIndex, int filterIndex)`
`String`	`getFilterManufacturer(int instrumentIndex, int filterIndex)`
`String`	`getFilterModel(int instrumentIndex, int filterIndex)`
`String`	`getFilterSerialNumber(int instrumentIndex, int filterIndex)`
`int`	`getFilterSetCount(int instrumentIndex)`
`String`	`getFilterSetDichroicRef(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetEmissionFilterRef(int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)`
`int`	`getFilterSetEmissionFilterRefCount(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetExcitationFilterRef(int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)`
`int`	`getFilterSetExcitationFilterRefCount(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetID(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetLotNumber(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetManufacturer(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetModel(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetSerialNumber(int instrumentIndex, int filterSetIndex)`
`FilterType`	`getFilterType(int instrumentIndex, int filterIndex)`
`Timestamp`	`getImageAcquisitionDate(int imageIndex)`
`String`	`getImageAnnotationRef(int imageIndex, int annotationRefIndex)`
`int`	`getImageAnnotationRefCount(int imageIndex)`
`int`	`getImageCount()`
`String`	`getImageDescription(int imageIndex)`
`String`	`getImageExperimenterGroupRef(int imageIndex)`
`String`	`getImageExperimenterRef(int imageIndex)`
`String`	`getImageExperimentRef(int imageIndex)`
`String`	`getImageID(int imageIndex)`
`String`	`getImageInstrumentRef(int imageIndex)`
`String`	`getImageMicrobeamManipulationRef(int imageIndex, int microbeamManipulationRefIndex)`
`String`	`getImageName(int imageIndex)`
`String`	`getImageROIRef(int imageIndex, int ROIRefIndex)`
`int`	`getImageROIRefCount(int imageIndex)`
`Double`	`getImagingEnvironmentAirPressure(int imageIndex)`
`PercentFraction`	`getImagingEnvironmentCO2Percent(int imageIndex)`
`PercentFraction`	`getImagingEnvironmentHumidity(int imageIndex)`
`Double`	`getImagingEnvironmentTemperature(int imageIndex)`
`int`	`getInstrumentCount()`
`String`	`getInstrumentID(int instrumentIndex)`
`Color`	`getLabelFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getLabelFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getLabelFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLabelFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getLabelFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getLabelID(int ROIIndex, int shapeIndex)`
`LineCap`	`getLabelLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getLabelLocked(int ROIIndex, int shapeIndex)`
`Color`	`getLabelStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getLabelStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getLabelStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getLabelText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLabelTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLabelTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLabelTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getLabelTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getLabelVisible(int ROIIndex, int shapeIndex)`
`Double`	`getLabelX(int ROIIndex, int shapeIndex)`
`Double`	`getLabelY(int ROIIndex, int shapeIndex)`
`PositiveInteger`	`getLaserFrequencyMultiplication(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserID(int instrumentIndex, int lightSourceIndex)`
`LaserMedium`	`getLaserLaserMedium(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserModel(int instrumentIndex, int lightSourceIndex)`
`Boolean`	`getLaserPockelCell(int instrumentIndex, int lightSourceIndex)`
`Double`	`getLaserPower(int instrumentIndex, int lightSourceIndex)`
`Pulse`	`getLaserPulse(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserPump(int instrumentIndex, int lightSourceIndex)`
`Double`	`getLaserRepetitionRate(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserSerialNumber(int instrumentIndex, int lightSourceIndex)`
`Boolean`	`getLaserTuneable(int instrumentIndex, int lightSourceIndex)`
`LaserType`	`getLaserType(int instrumentIndex, int lightSourceIndex)`
`PositiveInteger`	`getLaserWavelength(int instrumentIndex, int lightSourceIndex)`
`int`	`getLeaderCount(int experimenterGroupIndex)`
`String`	`getLightEmittingDiodeID(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeModel(int instrumentIndex, int lightSourceIndex)`
`Double`	`getLightEmittingDiodePower(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeSerialNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightPathDichroicRef(int imageIndex, int channelIndex)`
`String`	`getLightPathEmissionFilterRef(int imageIndex, int channelIndex, int emissionFilterRefIndex)`
`int`	`getLightPathEmissionFilterRefCount(int imageIndex, int channelIndex)`
`String`	`getLightPathExcitationFilterRef(int imageIndex, int channelIndex, int excitationFilterRefIndex)`
`int`	`getLightPathExcitationFilterRefCount(int imageIndex, int channelIndex)`
`int`	`getLightSourceCount(int instrumentIndex)`
`String`	`getLightSourceType(int instrumentIndex, int lightSourceIndex)`
`Color`	`getLineFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getLineFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getLineFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLineFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getLineFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getLineID(int ROIIndex, int shapeIndex)`
`LineCap`	`getLineLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getLineLocked(int ROIIndex, int shapeIndex)`
`Marker`	`getLineMarkerEnd(int ROIIndex, int shapeIndex)`
`Marker`	`getLineMarkerStart(int ROIIndex, int shapeIndex)`
`Color`	`getLineStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getLineStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getLineStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getLineText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLineTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLineTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLineTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getLineTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getLineVisible(int ROIIndex, int shapeIndex)`
`Double`	`getLineX1(int ROIIndex, int shapeIndex)`
`Double`	`getLineX2(int ROIIndex, int shapeIndex)`
`Double`	`getLineY1(int ROIIndex, int shapeIndex)`
`Double`	`getLineY2(int ROIIndex, int shapeIndex)`
`int`	`getListAnnotationAnnotationCount(int listAnnotationIndex)`
`String`	`getListAnnotationAnnotationRef(int listAnnotationIndex, int annotationRefIndex)`
`String`	`getListAnnotationAnnotator(int listAnnotationIndex)`
`int`	`getListAnnotationCount()`
`String`	`getListAnnotationDescription(int listAnnotationIndex)`
`String`	`getListAnnotationID(int listAnnotationIndex)`
`String`	`getListAnnotationNamespace(int listAnnotationIndex)`
`int`	`getLongAnnotationAnnotationCount(int longAnnotationIndex)`
`String`	`getLongAnnotationAnnotationRef(int longAnnotationIndex, int annotationRefIndex)`
`String`	`getLongAnnotationAnnotator(int longAnnotationIndex)`
`int`	`getLongAnnotationCount()`
`String`	`getLongAnnotationDescription(int longAnnotationIndex)`
`String`	`getLongAnnotationID(int longAnnotationIndex)`
`String`	`getLongAnnotationNamespace(int longAnnotationIndex)`
`Long`	`getLongAnnotationValue(int longAnnotationIndex)`
`Color`	`getMaskFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getMaskFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getMaskFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getMaskFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getMaskFontStyle(int ROIIndex, int shapeIndex)`
`Double`	`getMaskHeight(int ROIIndex, int shapeIndex)`
`String`	`getMaskID(int ROIIndex, int shapeIndex)`
`LineCap`	`getMaskLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getMaskLocked(int ROIIndex, int shapeIndex)`
`Color`	`getMaskStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getMaskStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getMaskStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getMaskText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getMaskTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getMaskTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getMaskTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getMaskTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getMaskVisible(int ROIIndex, int shapeIndex)`
`Double`	`getMaskWidth(int ROIIndex, int shapeIndex)`
`Double`	`getMaskX(int ROIIndex, int shapeIndex)`
`Double`	`getMaskY(int ROIIndex, int shapeIndex)`
`int`	`getMicrobeamManipulationCount(int experimentIndex)`
`String`	`getMicrobeamManipulationDescription(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicrobeamManipulationExperimenterRef(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicrobeamManipulationID(int experimentIndex, int microbeamManipulationIndex)`
`PercentFraction`	`getMicrobeamManipulationLightSourceSettingsAttenuation(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`int`	`getMicrobeamManipulationLightSourceSettingsCount(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicrobeamManipulationLightSourceSettingsID(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`PositiveInteger`	`getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`int`	`getMicrobeamManipulationRefCount(int imageIndex)`
`String`	`getMicrobeamManipulationROIRef(int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)`
`int`	`getMicrobeamManipulationROIRefCount(int experimentIndex, int microbeamManipulationIndex)`
`MicrobeamManipulationType`	`getMicrobeamManipulationType(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicroscopeLotNumber(int instrumentIndex)`
`String`	`getMicroscopeManufacturer(int instrumentIndex)`
`String`	`getMicroscopeModel(int instrumentIndex)`
`String`	`getMicroscopeSerialNumber(int instrumentIndex)`
`MicroscopeType`	`getMicroscopeType(int instrumentIndex)`
`Double`	`getObjectiveCalibratedMagnification(int instrumentIndex, int objectiveIndex)`
`Correction`	`getObjectiveCorrection(int instrumentIndex, int objectiveIndex)`
`int`	`getObjectiveCount(int instrumentIndex)`
`String`	`getObjectiveID(int instrumentIndex, int objectiveIndex)`
`Immersion`	`getObjectiveImmersion(int instrumentIndex, int objectiveIndex)`
`Boolean`	`getObjectiveIris(int instrumentIndex, int objectiveIndex)`
`Double`	`getObjectiveLensNA(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveLotNumber(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveManufacturer(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveModel(int instrumentIndex, int objectiveIndex)`
`Double`	`getObjectiveNominalMagnification(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveSerialNumber(int instrumentIndex, int objectiveIndex)`
`Double`	`getObjectiveSettingsCorrectionCollar(int imageIndex)`
`String`	`getObjectiveSettingsID(int imageIndex)`
`Medium`	`getObjectiveSettingsMedium(int imageIndex)`
`Double`	`getObjectiveSettingsRefractiveIndex(int imageIndex)`
`Double`	`getObjectiveWorkingDistance(int instrumentIndex, int objectiveIndex)`
`String`	`getPixelsAnnotationRef(int imageIndex, int annotationRefIndex)`
`int`	`getPixelsAnnotationRefCount(int imageIndex)`
`Boolean`	`getPixelsBigEndian(int imageIndex)`
`Boolean`	`getPixelsBinDataBigEndian(int imageIndex, int binDataIndex)`
`int`	`getPixelsBinDataCount(int imageIndex)`
`DimensionOrder`	`getPixelsDimensionOrder(int imageIndex)`
`String`	`getPixelsID(int imageIndex)`
`Boolean`	`getPixelsInterleaved(int imageIndex)`
`PositiveFloat`	`getPixelsPhysicalSizeX(int imageIndex)`
`PositiveFloat`	`getPixelsPhysicalSizeY(int imageIndex)`
`PositiveFloat`	`getPixelsPhysicalSizeZ(int imageIndex)`
`PositiveInteger`	`getPixelsSignificantBits(int imageIndex)`
`PositiveInteger`	`getPixelsSizeC(int imageIndex)`
`PositiveInteger`	`getPixelsSizeT(int imageIndex)`
`PositiveInteger`	`getPixelsSizeX(int imageIndex)`
`PositiveInteger`	`getPixelsSizeY(int imageIndex)`
`PositiveInteger`	`getPixelsSizeZ(int imageIndex)`
`Double`	`getPixelsTimeIncrement(int imageIndex)`
`PixelType`	`getPixelsType(int imageIndex)`
`String`	`getPlaneAnnotationRef(int imageIndex, int planeIndex, int annotationRefIndex)`
`int`	`getPlaneAnnotationRefCount(int imageIndex, int planeIndex)`
`int`	`getPlaneCount(int imageIndex)`
`Double`	`getPlaneDeltaT(int imageIndex, int planeIndex)`
`Double`	`getPlaneExposureTime(int imageIndex, int planeIndex)`
`String`	`getPlaneHashSHA1(int imageIndex, int planeIndex)`
`Double`	`getPlanePositionX(int imageIndex, int planeIndex)`
`Double`	`getPlanePositionY(int imageIndex, int planeIndex)`
`Double`	`getPlanePositionZ(int imageIndex, int planeIndex)`
`NonNegativeInteger`	`getPlaneTheC(int imageIndex, int planeIndex)`
`NonNegativeInteger`	`getPlaneTheT(int imageIndex, int planeIndex)`
`NonNegativeInteger`	`getPlaneTheZ(int imageIndex, int planeIndex)`
`String`	`getPlateAcquisitionAnnotationRef(int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)`
`int`	`getPlateAcquisitionAnnotationRefCount(int plateIndex, int plateAcquisitionIndex)`
`int`	`getPlateAcquisitionCount(int plateIndex)`
`String`	`getPlateAcquisitionDescription(int plateIndex, int plateAcquisitionIndex)`
`Timestamp`	`getPlateAcquisitionEndTime(int plateIndex, int plateAcquisitionIndex)`
`String`	`getPlateAcquisitionID(int plateIndex, int plateAcquisitionIndex)`
`PositiveInteger`	`getPlateAcquisitionMaximumFieldCount(int plateIndex, int plateAcquisitionIndex)`
`String`	`getPlateAcquisitionName(int plateIndex, int plateAcquisitionIndex)`
`Timestamp`	`getPlateAcquisitionStartTime(int plateIndex, int plateAcquisitionIndex)`
`String`	`getPlateAcquisitionWellSampleRef(int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)`
`String`	`getPlateAnnotationRef(int plateIndex, int annotationRefIndex)`
`int`	`getPlateAnnotationRefCount(int plateIndex)`
`NamingConvention`	`getPlateColumnNamingConvention(int plateIndex)`
`PositiveInteger`	`getPlateColumns(int plateIndex)`
`int`	`getPlateCount()`
`String`	`getPlateDescription(int plateIndex)`
`String`	`getPlateExternalIdentifier(int plateIndex)`
`NonNegativeInteger`	`getPlateFieldIndex(int plateIndex)`
`String`	`getPlateID(int plateIndex)`
`String`	`getPlateName(int plateIndex)`
`int`	`getPlateRefCount(int screenIndex)`
`NamingConvention`	`getPlateRowNamingConvention(int plateIndex)`
`PositiveInteger`	`getPlateRows(int plateIndex)`
`String`	`getPlateStatus(int plateIndex)`
`Double`	`getPlateWellOriginX(int plateIndex)`
`Double`	`getPlateWellOriginY(int plateIndex)`
`Color`	`getPointFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getPointFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getPointFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPointFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getPointFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getPointID(int ROIIndex, int shapeIndex)`
`LineCap`	`getPointLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getPointLocked(int ROIIndex, int shapeIndex)`
`Color`	`getPointStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getPointStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getPointStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getPointText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPointTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPointTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPointTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getPointTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getPointVisible(int ROIIndex, int shapeIndex)`
`Double`	`getPointX(int ROIIndex, int shapeIndex)`
`Double`	`getPointY(int ROIIndex, int shapeIndex)`
`Color`	`getPolygonFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getPolygonFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getPolygonFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolygonFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getPolygonFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getPolygonID(int ROIIndex, int shapeIndex)`
`LineCap`	`getPolygonLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolygonLocked(int ROIIndex, int shapeIndex)`
`String`	`getPolygonPoints(int ROIIndex, int shapeIndex)`
`Color`	`getPolygonStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getPolygonStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getPolygonStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getPolygonText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolygonTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolygonTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolygonTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getPolygonTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolygonVisible(int ROIIndex, int shapeIndex)`
`Color`	`getPolylineFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getPolylineFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getPolylineFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolylineFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getPolylineFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getPolylineID(int ROIIndex, int shapeIndex)`
`LineCap`	`getPolylineLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolylineLocked(int ROIIndex, int shapeIndex)`
`Marker`	`getPolylineMarkerEnd(int ROIIndex, int shapeIndex)`
`Marker`	`getPolylineMarkerStart(int ROIIndex, int shapeIndex)`
`String`	`getPolylinePoints(int ROIIndex, int shapeIndex)`
`Color`	`getPolylineStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getPolylineStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getPolylineStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getPolylineText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolylineTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolylineTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolylineTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getPolylineTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolylineVisible(int ROIIndex, int shapeIndex)`
`String`	`getProjectAnnotationRef(int projectIndex, int annotationRefIndex)`
`int`	`getProjectAnnotationRefCount(int projectIndex)`
`int`	`getProjectCount()`
`String`	`getProjectDatasetRef(int projectIndex, int datasetRefIndex)`
`String`	`getProjectDescription(int projectIndex)`
`String`	`getProjectExperimenterGroupRef(int projectIndex)`
`String`	`getProjectExperimenterRef(int projectIndex)`
`String`	`getProjectID(int projectIndex)`
`String`	`getProjectName(int projectIndex)`
`String`	`getReagentAnnotationRef(int screenIndex, int reagentIndex, int annotationRefIndex)`
`int`	`getReagentAnnotationRefCount(int screenIndex, int reagentIndex)`
`int`	`getReagentCount(int screenIndex)`
`String`	`getReagentDescription(int screenIndex, int reagentIndex)`
`String`	`getReagentID(int screenIndex, int reagentIndex)`
`String`	`getReagentName(int screenIndex, int reagentIndex)`
`String`	`getReagentReagentIdentifier(int screenIndex, int reagentIndex)`
`Color`	`getRectangleFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getRectangleFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getRectangleFontFamily(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getRectangleFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getRectangleFontStyle(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleHeight(int ROIIndex, int shapeIndex)`
`String`	`getRectangleID(int ROIIndex, int shapeIndex)`
`LineCap`	`getRectangleLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getRectangleLocked(int ROIIndex, int shapeIndex)`
`Color`	`getRectangleStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getRectangleStrokeDashArray(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getRectangleText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getRectangleTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getRectangleTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getRectangleTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getRectangleTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getRectangleVisible(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleWidth(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleX(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleY(int ROIIndex, int shapeIndex)`
`String`	`getRightsRightsHeld(int rightsHeldIndex)`
`String`	`getRightsRightsHolder(int rightsHolderIndex)`
`String`	`getROIAnnotationRef(int ROIIndex, int annotationRefIndex)`
`int`	`getROIAnnotationRefCount(int ROIIndex)`
`int`	`getROICount()`
`String`	`getROIDescription(int ROIIndex)`
`String`	`getROIID(int ROIIndex)`
`String`	`getROIName(int ROIIndex)`
`String`	`getROINamespace(int ROIIndex)`
`MetadataRoot`	`getRoot()` Unsupported with an AggregateMetadata.
`String`	`getScreenAnnotationRef(int screenIndex, int annotationRefIndex)`
`int`	`getScreenAnnotationRefCount(int screenIndex)`
`int`	`getScreenCount()`
`String`	`getScreenDescription(int screenIndex)`
`String`	`getScreenID(int screenIndex)`
`String`	`getScreenName(int screenIndex)`
`String`	`getScreenPlateRef(int screenIndex, int plateRefIndex)`
`String`	`getScreenProtocolDescription(int screenIndex)`
`String`	`getScreenProtocolIdentifier(int screenIndex)`
`String`	`getScreenReagentSetDescription(int screenIndex)`
`String`	`getScreenReagentSetIdentifier(int screenIndex)`
`String`	`getScreenType(int screenIndex)`
`int`	`getShapeCount(int ROIIndex)`
`String`	`getShapeType(int roiIndex, int shapeIndex)`
`String`	`getStageLabelName(int imageIndex)`
`Double`	`getStageLabelX(int imageIndex)`
`Double`	`getStageLabelY(int imageIndex)`
`Double`	`getStageLabelZ(int imageIndex)`
`int`	`getTagAnnotationAnnotationCount(int tagAnnotationIndex)`
`String`	`getTagAnnotationAnnotationRef(int tagAnnotationIndex, int annotationRefIndex)`
`String`	`getTagAnnotationAnnotator(int tagAnnotationIndex)`
`int`	`getTagAnnotationCount()`
`String`	`getTagAnnotationDescription(int tagAnnotationIndex)`
`String`	`getTagAnnotationID(int tagAnnotationIndex)`
`String`	`getTagAnnotationNamespace(int tagAnnotationIndex)`
`String`	`getTagAnnotationValue(int tagAnnotationIndex)`
`int`	`getTermAnnotationAnnotationCount(int termAnnotationIndex)`
`String`	`getTermAnnotationAnnotationRef(int termAnnotationIndex, int annotationRefIndex)`
`String`	`getTermAnnotationAnnotator(int termAnnotationIndex)`
`int`	`getTermAnnotationCount()`
`String`	`getTermAnnotationDescription(int termAnnotationIndex)`
`String`	`getTermAnnotationID(int termAnnotationIndex)`
`String`	`getTermAnnotationNamespace(int termAnnotationIndex)`
`String`	`getTermAnnotationValue(int termAnnotationIndex)`
`int`	`getTiffDataCount(int imageIndex)`
`NonNegativeInteger`	`getTiffDataFirstC(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataFirstT(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataFirstZ(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataIFD(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataPlaneCount(int imageIndex, int tiffDataIndex)`
`int`	`getTimestampAnnotationAnnotationCount(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationAnnotationRef(int timestampAnnotationIndex, int annotationRefIndex)`
`String`	`getTimestampAnnotationAnnotator(int timestampAnnotationIndex)`
`int`	`getTimestampAnnotationCount()`
`String`	`getTimestampAnnotationDescription(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationID(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationNamespace(int timestampAnnotationIndex)`
`Timestamp`	`getTimestampAnnotationValue(int timestampAnnotationIndex)`
`PositiveInteger`	`getTransmittanceRangeCutIn(int instrumentIndex, int filterIndex)`
`NonNegativeInteger`	`getTransmittanceRangeCutInTolerance(int instrumentIndex, int filterIndex)`
`PositiveInteger`	`getTransmittanceRangeCutOut(int instrumentIndex, int filterIndex)`
`NonNegativeInteger`	`getTransmittanceRangeCutOutTolerance(int instrumentIndex, int filterIndex)`
`PercentFraction`	`getTransmittanceRangeTransmittance(int instrumentIndex, int filterIndex)`
`String`	`getUUID()` Gets the UUID associated with this collection of metadata.
`String`	`getUUIDFileName(int imageIndex, int tiffDataIndex)`
`String`	`getUUIDValue(int imageIndex, int tiffDataIndex)`
`String`	`getWellAnnotationRef(int plateIndex, int wellIndex, int annotationRefIndex)`
`int`	`getWellAnnotationRefCount(int plateIndex, int wellIndex)`
`Color`	`getWellColor(int plateIndex, int wellIndex)`
`NonNegativeInteger`	`getWellColumn(int plateIndex, int wellIndex)`
`int`	`getWellCount(int plateIndex)`
`String`	`getWellExternalDescription(int plateIndex, int wellIndex)`
`String`	`getWellExternalIdentifier(int plateIndex, int wellIndex)`
`String`	`getWellID(int plateIndex, int wellIndex)`
`String`	`getWellReagentRef(int plateIndex, int wellIndex)`
`NonNegativeInteger`	`getWellRow(int plateIndex, int wellIndex)`
`String`	`getWellSampleAnnotationRef(int plateIndex, int wellIndex, int wellSampleIndex, int annotationRefIndex)`
`int`	`getWellSampleAnnotationRefCount(int plateIndex, int wellIndex, int wellSampleIndex)`
`int`	`getWellSampleCount(int plateIndex, int wellIndex)`
`String`	`getWellSampleID(int plateIndex, int wellIndex, int wellSampleIndex)`
`String`	`getWellSampleImageRef(int plateIndex, int wellIndex, int wellSampleIndex)`
`NonNegativeInteger`	`getWellSampleIndex(int plateIndex, int wellIndex, int wellSampleIndex)`
`Double`	`getWellSamplePositionX(int plateIndex, int wellIndex, int wellSampleIndex)`
`Double`	`getWellSamplePositionY(int plateIndex, int wellIndex, int wellSampleIndex)`
`int`	`getWellSampleRefCount(int plateIndex, int plateAcquisitionIndex)`
`Timestamp`	`getWellSampleTimepoint(int plateIndex, int wellIndex, int wellSampleIndex)`
`String`	`getWellType(int plateIndex, int wellIndex)`
`int`	`getXMLAnnotationAnnotationCount(int xmlAnnotationIndex)`
`String`	`getXMLAnnotationAnnotationRef(int XMLAnnotationIndex, int annotationRefIndex)`
`String`	`getXMLAnnotationAnnotator(int XMLAnnotationIndex)`
`int`	`getXMLAnnotationCount()`
`String`	`getXMLAnnotationDescription(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationID(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationNamespace(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationValue(int XMLAnnotationIndex)`
`void`	`setArcID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcPower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcType(ArcType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setBinaryFileFileName(String fileName, int fileAnnotationIndex)`
`void`	`setBinaryFileMIMEType(String mimeType, int fileAnnotationIndex)`
`void`	`setBinaryFileSize(NonNegativeLong size, int fileAnnotationIndex)`
`void`	`setBinaryOnlyMetadataFile(String metadataFile)`
`void`	`setBinaryOnlyUUID(String uuid)`
`void`	`setBooleanAnnotationAnnotationRef(String annotation, int booleanAnnotationIndex, int annotationRefIndex)`
`void`	`setBooleanAnnotationAnnotator(String annotator, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationDescription(String description, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationID(String id, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationNamespace(String namespace, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationValue(Boolean value, int booleanAnnotationIndex)`
`void`	`setChannelAcquisitionMode(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)`
`void`	`setChannelAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)`
`void`	`setChannelColor(Color color, int imageIndex, int channelIndex)`
`void`	`setChannelContrastMethod(ContrastMethod contrastMethod, int imageIndex, int channelIndex)`
`void`	`setChannelEmissionWavelength(PositiveInteger emissionWavelength, int imageIndex, int channelIndex)`
`void`	`setChannelExcitationWavelength(PositiveInteger excitationWavelength, int imageIndex, int channelIndex)`
`void`	`setChannelFilterSetRef(String filterSet, int imageIndex, int channelIndex)`
`void`	`setChannelFluor(String fluor, int imageIndex, int channelIndex)`
`void`	`setChannelID(String id, int imageIndex, int channelIndex)`
`void`	`setChannelIlluminationType(IlluminationType illuminationType, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsAttenuation(PercentFraction attenuation, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsID(String id, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsWavelength(PositiveInteger wavelength, int imageIndex, int channelIndex)`
`void`	`setChannelName(String name, int imageIndex, int channelIndex)`
`void`	`setChannelNDFilter(Double ndFilter, int imageIndex, int channelIndex)`
`void`	`setChannelPinholeSize(Double pinholeSize, int imageIndex, int channelIndex)`
`void`	`setChannelPockelCellSetting(Integer pockelCellSetting, int imageIndex, int channelIndex)`
`void`	`setChannelSamplesPerPixel(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)`
`void`	`setCommentAnnotationAnnotationRef(String annotation, int commentAnnotationIndex, int annotationRefIndex)`
`void`	`setCommentAnnotationAnnotator(String annotator, int commentAnnotationIndex)`
`void`	`setCommentAnnotationDescription(String description, int commentAnnotationIndex)`
`void`	`setCommentAnnotationID(String id, int commentAnnotationIndex)`
`void`	`setCommentAnnotationNamespace(String namespace, int commentAnnotationIndex)`
`void`	`setCommentAnnotationValue(String value, int commentAnnotationIndex)`
`void`	`setDatasetAnnotationRef(String annotation, int datasetIndex, int annotationRefIndex)`
`void`	`setDatasetDescription(String description, int datasetIndex)`
`void`	`setDatasetExperimenterGroupRef(String experimenterGroup, int datasetIndex)`
`void`	`setDatasetExperimenterRef(String experimenter, int datasetIndex)`
`void`	`setDatasetID(String id, int datasetIndex)`
`void`	`setDatasetImageRef(String image, int datasetIndex, int imageRefIndex)`
`void`	`setDatasetName(String name, int datasetIndex)`
`void`	`setDetectorAmplificationGain(Double amplificationGain, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorGain(Double gain, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorID(String id, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorLotNumber(String lotNumber, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorManufacturer(String manufacturer, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorModel(String model, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorOffset(Double offset, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorSerialNumber(String serialNumber, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorSettingsBinning(Binning binning, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsGain(Double gain, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsID(String id, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsIntegration(PositiveInteger integration, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsOffset(Double offset, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsReadOutRate(Double readOutRate, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsVoltage(Double voltage, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsZoom(Double zoom, int imageIndex, int channelIndex)`
`void`	`setDetectorType(DetectorType type, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorVoltage(Double voltage, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorZoom(Double zoom, int instrumentIndex, int detectorIndex)`
`void`	`setDichroicID(String id, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicLotNumber(String lotNumber, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicManufacturer(String manufacturer, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicModel(String model, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicSerialNumber(String serialNumber, int instrumentIndex, int dichroicIndex)`
`void`	`setDoubleAnnotationAnnotationRef(String annotation, int doubleAnnotationIndex, int annotationRefIndex)`
`void`	`setDoubleAnnotationAnnotator(String annotator, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationDescription(String description, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationID(String id, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationNamespace(String namespace, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationValue(Double value, int doubleAnnotationIndex)`
`void`	`setEllipseFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setEllipseID(String id, int ROIIndex, int shapeIndex)`
`void`	`setEllipseLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setEllipseLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setEllipseRadiusX(Double radiusX, int ROIIndex, int shapeIndex)`
`void`	`setEllipseRadiusY(Double radiusY, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setEllipseText(String text, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setEllipseVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setEllipseX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setEllipseY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setExperimentDescription(String description, int experimentIndex)`
`void`	`setExperimenterAnnotationRef(String annotation, int experimenterIndex, int annotationRefIndex)`
`void`	`setExperimenterEmail(String email, int experimenterIndex)`
`void`	`setExperimenterFirstName(String firstName, int experimenterIndex)`
`void`	`setExperimenterGroupAnnotationRef(String annotation, int experimenterGroupIndex, int annotationRefIndex)`
`void`	`setExperimenterGroupDescription(String description, int experimenterGroupIndex)`
`void`	`setExperimenterGroupExperimenterRef(String experimenter, int experimenterGroupIndex, int experimenterRefIndex)`
`void`	`setExperimenterGroupID(String id, int experimenterGroupIndex)`
`void`	`setExperimenterGroupLeader(String leader, int experimenterGroupIndex, int leaderIndex)`
`void`	`setExperimenterGroupName(String name, int experimenterGroupIndex)`
`void`	`setExperimenterID(String id, int experimenterIndex)`
`void`	`setExperimenterInstitution(String institution, int experimenterIndex)`
`void`	`setExperimenterLastName(String lastName, int experimenterIndex)`
`void`	`setExperimenterMiddleName(String middleName, int experimenterIndex)`
`void`	`setExperimenterUserName(String userName, int experimenterIndex)`
`void`	`setExperimentExperimenterRef(String experimenter, int experimentIndex)`
`void`	`setExperimentID(String id, int experimentIndex)`
`void`	`setExperimentType(ExperimentType type, int experimentIndex)`
`void`	`setFilamentID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentPower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentType(FilamentType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setFileAnnotationAnnotationRef(String annotation, int fileAnnotationIndex, int annotationRefIndex)`
`void`	`setFileAnnotationAnnotator(String annotator, int fileAnnotationIndex)`
`void`	`setFileAnnotationDescription(String description, int fileAnnotationIndex)`
`void`	`setFileAnnotationID(String id, int fileAnnotationIndex)`
`void`	`setFileAnnotationNamespace(String namespace, int fileAnnotationIndex)`
`void`	`setFilterFilterWheel(String filterWheel, int instrumentIndex, int filterIndex)`
`void`	`setFilterID(String id, int instrumentIndex, int filterIndex)`
`void`	`setFilterLotNumber(String lotNumber, int instrumentIndex, int filterIndex)`
`void`	`setFilterManufacturer(String manufacturer, int instrumentIndex, int filterIndex)`
`void`	`setFilterModel(String model, int instrumentIndex, int filterIndex)`
`void`	`setFilterSerialNumber(String serialNumber, int instrumentIndex, int filterIndex)`
`void`	`setFilterSetDichroicRef(String dichroic, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetEmissionFilterRef(String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)`
`void`	`setFilterSetExcitationFilterRef(String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)`
`void`	`setFilterSetID(String id, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetLotNumber(String lotNumber, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetManufacturer(String manufacturer, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetModel(String model, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetSerialNumber(String serialNumber, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterType(FilterType type, int instrumentIndex, int filterIndex)`
`void`	`setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex)`
`void`	`setImageAnnotationRef(String annotation, int imageIndex, int annotationRefIndex)`
`void`	`setImageDescription(String description, int imageIndex)`
`void`	`setImageExperimenterGroupRef(String experimenterGroup, int imageIndex)`
`void`	`setImageExperimenterRef(String experimenter, int imageIndex)`
`void`	`setImageExperimentRef(String experiment, int imageIndex)`
`void`	`setImageID(String id, int imageIndex)`
`void`	`setImageInstrumentRef(String instrument, int imageIndex)`
`void`	`setImageMicrobeamManipulationRef(String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)`
`void`	`setImageName(String name, int imageIndex)`
`void`	`setImageROIRef(String roi, int imageIndex, int ROIRefIndex)`
`void`	`setImagingEnvironmentAirPressure(Double airPressure, int imageIndex)`
`void`	`setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex)`
`void`	`setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex)`
`void`	`setImagingEnvironmentTemperature(Double temperature, int imageIndex)`
`void`	`setInstrumentID(String id, int instrumentIndex)`
`void`	`setLabelFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setLabelFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setLabelID(String id, int ROIIndex, int shapeIndex)`
`void`	`setLabelLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setLabelLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setLabelText(String text, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setLabelTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setLabelVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setLabelX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setLabelY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserLaserMedium(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPockelCell(Boolean pockelCell, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPulse(Pulse pulse, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPump(String pump, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserRepetitionRate(Double repetitionRate, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserTuneable(Boolean tuneable, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserType(LaserType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserWavelength(PositiveInteger wavelength, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodePower(Double power, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex)`
`void`	`setLightPathEmissionFilterRef(String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)`
`void`	`setLightPathExcitationFilterRef(String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)`
`void`	`setLineFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setLineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setLineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setLineFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setLineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setLineID(String id, int ROIIndex, int shapeIndex)`
`void`	`setLineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setLineLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setLineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)`
`void`	`setLineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setLineText(String text, int ROIIndex, int shapeIndex)`
`void`	`setLineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setLineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setLineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setLineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setLineVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setLineX1(Double x1, int ROIIndex, int shapeIndex)`
`void`	`setLineX2(Double x2, int ROIIndex, int shapeIndex)`
`void`	`setLineY1(Double y1, int ROIIndex, int shapeIndex)`
`void`	`setLineY2(Double y2, int ROIIndex, int shapeIndex)`
`void`	`setListAnnotationAnnotationRef(String annotation, int listAnnotationIndex, int annotationRefIndex)`
`void`	`setListAnnotationAnnotator(String annotator, int listAnnotationIndex)`
`void`	`setListAnnotationDescription(String description, int listAnnotationIndex)`
`void`	`setListAnnotationID(String id, int listAnnotationIndex)`
`void`	`setListAnnotationNamespace(String namespace, int listAnnotationIndex)`
`void`	`setLongAnnotationAnnotationRef(String annotation, int longAnnotationIndex, int annotationRefIndex)`
`void`	`setLongAnnotationAnnotator(String annotator, int longAnnotationIndex)`
`void`	`setLongAnnotationDescription(String description, int longAnnotationIndex)`
`void`	`setLongAnnotationID(String id, int longAnnotationIndex)`
`void`	`setLongAnnotationNamespace(String namespace, int longAnnotationIndex)`
`void`	`setLongAnnotationValue(Long value, int longAnnotationIndex)`
`void`	`setMaskBinData(byte[] binData, int ROIIndex, int shapeIndex)`
`void`	`setMaskFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setMaskFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setMaskHeight(Double height, int ROIIndex, int shapeIndex)`
`void`	`setMaskID(String id, int ROIIndex, int shapeIndex)`
`void`	`setMaskLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setMaskLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setMaskText(String text, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setMaskTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setMaskVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setMaskWidth(Double width, int ROIIndex, int shapeIndex)`
`void`	`setMaskX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setMaskY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setMicrobeamManipulationDescription(String description, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationExperimenterRef(String experimenter, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationID(String id, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsID(String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationROIRef(String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)`
`void`	`setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicroscopeLotNumber(String lotNumber, int instrumentIndex)`
`void`	`setMicroscopeManufacturer(String manufacturer, int instrumentIndex)`
`void`	`setMicroscopeModel(String model, int instrumentIndex)`
`void`	`setMicroscopeSerialNumber(String serialNumber, int instrumentIndex)`
`void`	`setMicroscopeType(MicroscopeType type, int instrumentIndex)`
`void`	`setObjectiveCalibratedMagnification(Double calibratedMagnification, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveCorrection(Correction correction, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveID(String id, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveImmersion(Immersion immersion, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveIris(Boolean iris, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveLensNA(Double lensNA, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveLotNumber(String lotNumber, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveManufacturer(String manufacturer, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveModel(String model, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveNominalMagnification(Double nominalMagnification, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveSerialNumber(String serialNumber, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveSettingsCorrectionCollar(Double correctionCollar, int imageIndex)`
`void`	`setObjectiveSettingsID(String id, int imageIndex)`
`void`	`setObjectiveSettingsMedium(Medium medium, int imageIndex)`
`void`	`setObjectiveSettingsRefractiveIndex(Double refractiveIndex, int imageIndex)`
`void`	`setObjectiveWorkingDistance(Double workingDistance, int instrumentIndex, int objectiveIndex)`
`void`	`setPixelsAnnotationRef(String annotation, int imageIndex, int annotationRefIndex)`
`void`	`setPixelsBigEndian(Boolean bigEndian, int imageIndex)`
`void`	`setPixelsBinDataBigEndian(Boolean bigEndian, int imageIndex, int binDataIndex)`
`void`	`setPixelsDimensionOrder(DimensionOrder dimensionOrder, int imageIndex)`
`void`	`setPixelsID(String id, int imageIndex)`
`void`	`setPixelsInterleaved(Boolean interleaved, int imageIndex)`
`void`	`setPixelsPhysicalSizeX(PositiveFloat physicalSizeX, int imageIndex)`
`void`	`setPixelsPhysicalSizeY(PositiveFloat physicalSizeY, int imageIndex)`
`void`	`setPixelsPhysicalSizeZ(PositiveFloat physicalSizeZ, int imageIndex)`
`void`	`setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex)`
`void`	`setPixelsSizeC(PositiveInteger sizeC, int imageIndex)`
`void`	`setPixelsSizeT(PositiveInteger sizeT, int imageIndex)`
`void`	`setPixelsSizeX(PositiveInteger sizeX, int imageIndex)`
`void`	`setPixelsSizeY(PositiveInteger sizeY, int imageIndex)`
`void`	`setPixelsSizeZ(PositiveInteger sizeZ, int imageIndex)`
`void`	`setPixelsTimeIncrement(Double timeIncrement, int imageIndex)`
`void`	`setPixelsType(PixelType type, int imageIndex)`
`void`	`setPlaneAnnotationRef(String annotation, int imageIndex, int planeIndex, int annotationRefIndex)`
`void`	`setPlaneDeltaT(Double deltaT, int imageIndex, int planeIndex)`
`void`	`setPlaneExposureTime(Double exposureTime, int imageIndex, int planeIndex)`
`void`	`setPlaneHashSHA1(String hashSHA1, int imageIndex, int planeIndex)`
`void`	`setPlanePositionX(Double positionX, int imageIndex, int planeIndex)`
`void`	`setPlanePositionY(Double positionY, int imageIndex, int planeIndex)`
`void`	`setPlanePositionZ(Double positionZ, int imageIndex, int planeIndex)`
`void`	`setPlaneTheC(NonNegativeInteger theC, int imageIndex, int planeIndex)`
`void`	`setPlaneTheT(NonNegativeInteger theT, int imageIndex, int planeIndex)`
`void`	`setPlaneTheZ(NonNegativeInteger theZ, int imageIndex, int planeIndex)`
`void`	`setPlateAcquisitionAnnotationRef(String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)`
`void`	`setPlateAcquisitionDescription(String description, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionEndTime(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionID(String id, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionName(String name, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionStartTime(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionWellSampleRef(String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)`
`void`	`setPlateAnnotationRef(String annotation, int plateIndex, int annotationRefIndex)`
`void`	`setPlateColumnNamingConvention(NamingConvention columnNamingConvention, int plateIndex)`
`void`	`setPlateColumns(PositiveInteger columns, int plateIndex)`
`void`	`setPlateDescription(String description, int plateIndex)`
`void`	`setPlateExternalIdentifier(String externalIdentifier, int plateIndex)`
`void`	`setPlateFieldIndex(NonNegativeInteger fieldIndex, int plateIndex)`
`void`	`setPlateID(String id, int plateIndex)`
`void`	`setPlateName(String name, int plateIndex)`
`void`	`setPlateRowNamingConvention(NamingConvention rowNamingConvention, int plateIndex)`
`void`	`setPlateRows(PositiveInteger rows, int plateIndex)`
`void`	`setPlateStatus(String status, int plateIndex)`
`void`	`setPlateWellOriginX(Double wellOriginX, int plateIndex)`
`void`	`setPlateWellOriginY(Double wellOriginY, int plateIndex)`
`void`	`setPointFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPointFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPointFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPointFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPointFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPointID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPointLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPointLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPointText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPointTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPointTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPointTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPointTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPointVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setPointX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setPointY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPolygonID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPolygonLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPolygonLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPolygonPoints(String points, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPolygonText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPolygonVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPolylineID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPolylineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPolylineLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPolylineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)`
`void`	`setPolylineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)`
`void`	`setPolylinePoints(String points, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPolylineText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPolylineVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setProjectAnnotationRef(String annotation, int projectIndex, int annotationRefIndex)`
`void`	`setProjectDatasetRef(String dataset, int projectIndex, int datasetRefIndex)`
`void`	`setProjectDescription(String description, int projectIndex)`
`void`	`setProjectExperimenterGroupRef(String experimenterGroup, int projectIndex)`
`void`	`setProjectExperimenterRef(String experimenter, int projectIndex)`
`void`	`setProjectID(String id, int projectIndex)`
`void`	`setProjectName(String name, int projectIndex)`
`void`	`setReagentAnnotationRef(String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)`
`void`	`setReagentDescription(String description, int screenIndex, int reagentIndex)`
`void`	`setReagentID(String id, int screenIndex, int reagentIndex)`
`void`	`setReagentName(String name, int screenIndex, int reagentIndex)`
`void`	`setReagentReagentIdentifier(String reagentIdentifier, int screenIndex, int reagentIndex)`
`void`	`setRectangleFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setRectangleHeight(Double height, int ROIIndex, int shapeIndex)`
`void`	`setRectangleID(String id, int ROIIndex, int shapeIndex)`
`void`	`setRectangleLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setRectangleLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeWidth(Double strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setRectangleText(String text, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setRectangleVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setRectangleWidth(Double width, int ROIIndex, int shapeIndex)`
`void`	`setRectangleX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setRectangleY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setRightsRightsHeld(String rightsHeld)`
`void`	`setRightsRightsHolder(String rightsHolder)`
`void`	`setROIAnnotationRef(String annotation, int ROIIndex, int annotationRefIndex)`
`void`	`setROIDescription(String description, int ROIIndex)`
`void`	`setROIID(String id, int ROIIndex)`
`void`	`setROIName(String name, int ROIIndex)`
`void`	`setROINamespace(String namespace, int ROIIndex)`
`void`	`setRoot(MetadataRoot root)` Unsupported with an AggregateMetadata.
`void`	`setRoot(Object root)` Deprecated.
`void`	`setScreenAnnotationRef(String annotation, int screenIndex, int annotationRefIndex)`
`void`	`setScreenDescription(String description, int screenIndex)`
`void`	`setScreenID(String id, int screenIndex)`
`void`	`setScreenName(String name, int screenIndex)`
`void`	`setScreenPlateRef(String plate, int screenIndex, int plateRefIndex)`
`void`	`setScreenProtocolDescription(String protocolDescription, int screenIndex)`
`void`	`setScreenProtocolIdentifier(String protocolIdentifier, int screenIndex)`
`void`	`setScreenReagentSetDescription(String reagentSetDescription, int screenIndex)`
`void`	`setScreenReagentSetIdentifier(String reagentSetIdentifier, int screenIndex)`
`void`	`setScreenType(String type, int screenIndex)`
`void`	`setStageLabelName(String name, int imageIndex)`
`void`	`setStageLabelX(Double x, int imageIndex)`
`void`	`setStageLabelY(Double y, int imageIndex)`
`void`	`setStageLabelZ(Double z, int imageIndex)`
`void`	`setTagAnnotationAnnotationRef(String annotation, int tagAnnotationIndex, int annotationRefIndex)`
`void`	`setTagAnnotationAnnotator(String annotator, int tagAnnotationIndex)`
`void`	`setTagAnnotationDescription(String description, int tagAnnotationIndex)`
`void`	`setTagAnnotationID(String id, int tagAnnotationIndex)`
`void`	`setTagAnnotationNamespace(String namespace, int tagAnnotationIndex)`
`void`	`setTagAnnotationValue(String value, int tagAnnotationIndex)`
`void`	`setTermAnnotationAnnotationRef(String annotation, int termAnnotationIndex, int annotationRefIndex)`
`void`	`setTermAnnotationAnnotator(String annotator, int termAnnotationIndex)`
`void`	`setTermAnnotationDescription(String description, int termAnnotationIndex)`
`void`	`setTermAnnotationID(String id, int termAnnotationIndex)`
`void`	`setTermAnnotationNamespace(String namespace, int termAnnotationIndex)`
`void`	`setTermAnnotationValue(String value, int termAnnotationIndex)`
`void`	`setTiffDataFirstC(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataFirstT(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataFirstZ(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataIFD(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataPlaneCount(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)`
`void`	`setTimestampAnnotationAnnotationRef(String annotation, int timestampAnnotationIndex, int annotationRefIndex)`
`void`	`setTimestampAnnotationAnnotator(String annotator, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationDescription(String description, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationID(String id, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationNamespace(String namespace, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationValue(Timestamp value, int timestampAnnotationIndex)`
`void`	`setTransmittanceRangeCutIn(PositiveInteger cutIn, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutInTolerance(NonNegativeInteger cutInTolerance, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutOut(PositiveInteger cutOut, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutOutTolerance(NonNegativeInteger cutOutTolerance, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeTransmittance(PercentFraction transmittance, int instrumentIndex, int filterIndex)`
`void`	`setUUID(String uuid)` Sets the UUID associated with this collection of metadata.
`void`	`setUUIDFileName(String fileName, int imageIndex, int tiffDataIndex)`
`void`	`setUUIDValue(String value, int imageIndex, int tiffDataIndex)`
`void`	`setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex)`
`void`	`setWellColor(Color color, int plateIndex, int wellIndex)`
`void`	`setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex)`
`void`	`setWellExternalDescription(String externalDescription, int plateIndex, int wellIndex)`
`void`	`setWellExternalIdentifier(String externalIdentifier, int plateIndex, int wellIndex)`
`void`	`setWellID(String id, int plateIndex, int wellIndex)`
`void`	`setWellReagentRef(String reagent, int plateIndex, int wellIndex)`
`void`	`setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex)`
`void`	`setWellSampleAnnotationRef(String annotation, int plateIndex, int wellIndex, int wellSampleIndex, int annotationRefIndex)`
`void`	`setWellSampleID(String id, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleImageRef(String image, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleIndex(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSamplePositionX(Double positionX, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSamplePositionY(Double positionY, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleTimepoint(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellType(String type, int plateIndex, int wellIndex)`
`void`	`setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex)`
`void`	`setXMLAnnotationAnnotator(String annotator, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationDescription(String description, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationID(String id, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationNamespace(String namespace, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationValue(String value, int XMLAnnotationIndex)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- AggregateMetadata
```
public AggregateMetadata(List<BaseMetadata> delegates)
```
  Creates a new instance.
  
  Parameters:
  delegates - of type MetadataRetrieve and/or MetadataStore.

Method Detail

createRoot
```
public void createRoot()
```
Specified by:

createRoot in interface MetadataStore

getRoot
```
public MetadataRoot getRoot()
```
Unsupported with an AggregateMetadata.

Specified by:

getRoot in interface MetadataStore

Throws:

RuntimeException - Always.

setRoot
```
public void setRoot(MetadataRoot root)
```
Unsupported with an AggregateMetadata.

Specified by:

setRoot in interface MetadataStore

Throws:

RuntimeException - Always.

setRoot
```
@Deprecated
public void setRoot(Object root)
```
Deprecated.

Unsupported with an AggregateMetadata.

Specified by:

setRoot in interface MetadataStore

Throws:

RuntimeException - Always.

getPixelsBinDataCount
```
public int getPixelsBinDataCount(int imageIndex)
```
Specified by:

getPixelsBinDataCount in interface MetadataRetrieve

getBooleanAnnotationAnnotationCount
```
public int getBooleanAnnotationAnnotationCount(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationAnnotationCount in interface MetadataRetrieve

getCommentAnnotationAnnotationCount
```
public int getCommentAnnotationAnnotationCount(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationAnnotationCount in interface MetadataRetrieve

getDoubleAnnotationAnnotationCount
```
public int getDoubleAnnotationAnnotationCount(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationAnnotationCount in interface MetadataRetrieve

getFileAnnotationAnnotationCount
```
public int getFileAnnotationAnnotationCount(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationAnnotationCount in interface MetadataRetrieve

getListAnnotationAnnotationCount
```
public int getListAnnotationAnnotationCount(int listAnnotationIndex)
```
Specified by:

getListAnnotationAnnotationCount in interface MetadataRetrieve

getLongAnnotationAnnotationCount
```
public int getLongAnnotationAnnotationCount(int longAnnotationIndex)
```
Specified by:

getLongAnnotationAnnotationCount in interface MetadataRetrieve

getTagAnnotationAnnotationCount
```
public int getTagAnnotationAnnotationCount(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationAnnotationCount in interface MetadataRetrieve

getTermAnnotationAnnotationCount
```
public int getTermAnnotationAnnotationCount(int termAnnotationIndex)
```
Specified by:

getTermAnnotationAnnotationCount in interface MetadataRetrieve

getTimestampAnnotationAnnotationCount
```
public int getTimestampAnnotationAnnotationCount(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationAnnotationCount in interface MetadataRetrieve

getXMLAnnotationAnnotationCount
```
public int getXMLAnnotationAnnotationCount(int xmlAnnotationIndex)
```
Specified by:

getXMLAnnotationAnnotationCount in interface MetadataRetrieve

getLightSourceType

public String getLightSourceType(int instrumentIndex,
                        int lightSourceIndex)

Specified by:: getLightSourceType in interface MetadataRetrieve

getShapeType

public String getShapeType(int roiIndex,
                  int shapeIndex)

Specified by:: getShapeType in interface MetadataRetrieve

getROIAnnotationRefCount
```
public int getROIAnnotationRefCount(int ROIIndex)
```
Specified by:

getROIAnnotationRefCount in interface MetadataRetrieve

getPlateAcquisitionAnnotationRefCount

public int getPlateAcquisitionAnnotationRefCount(int plateIndex,
                                        int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionAnnotationRefCount in interface MetadataRetrieve

getPlateAnnotationRefCount
```
public int getPlateAnnotationRefCount(int plateIndex)
```
Specified by:

getPlateAnnotationRefCount in interface MetadataRetrieve

getExperimenterGroupAnnotationRefCount
```
public int getExperimenterGroupAnnotationRefCount(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupAnnotationRefCount in interface MetadataRetrieve

getImageAnnotationRefCount
```
public int getImageAnnotationRefCount(int imageIndex)
```
Specified by:

getImageAnnotationRefCount in interface MetadataRetrieve

getScreenAnnotationRefCount
```
public int getScreenAnnotationRefCount(int screenIndex)
```
Specified by:

getScreenAnnotationRefCount in interface MetadataRetrieve

getWellAnnotationRefCount

public int getWellAnnotationRefCount(int plateIndex,
                            int wellIndex)

Specified by:: getWellAnnotationRefCount in interface MetadataRetrieve

getDatasetAnnotationRefCount
```
public int getDatasetAnnotationRefCount(int datasetIndex)
```
Specified by:

getDatasetAnnotationRefCount in interface MetadataRetrieve

getProjectAnnotationRefCount
```
public int getProjectAnnotationRefCount(int projectIndex)
```
Specified by:

getProjectAnnotationRefCount in interface MetadataRetrieve

getReagentAnnotationRefCount

public int getReagentAnnotationRefCount(int screenIndex,
                               int reagentIndex)

Specified by:: getReagentAnnotationRefCount in interface MetadataRetrieve

getPlaneAnnotationRefCount

public int getPlaneAnnotationRefCount(int imageIndex,
                             int planeIndex)

Specified by:: getPlaneAnnotationRefCount in interface MetadataRetrieve

getExperimenterAnnotationRefCount
```
public int getExperimenterAnnotationRefCount(int experimenterIndex)
```
Specified by:

getExperimenterAnnotationRefCount in interface MetadataRetrieve

getWellSampleAnnotationRefCount

public int getWellSampleAnnotationRefCount(int plateIndex,
                                  int wellIndex,
                                  int wellSampleIndex)

Specified by:: getWellSampleAnnotationRefCount in interface MetadataRetrieve

getPixelsAnnotationRefCount
```
public int getPixelsAnnotationRefCount(int imageIndex)
```
Specified by:

getPixelsAnnotationRefCount in interface MetadataRetrieve

getChannelAnnotationRefCount

public int getChannelAnnotationRefCount(int imageIndex,
                               int channelIndex)

Specified by:: getChannelAnnotationRefCount in interface MetadataRetrieve

getBooleanAnnotationCount
```
public int getBooleanAnnotationCount()
```
Specified by:

getBooleanAnnotationCount in interface MetadataRetrieve

getChannelCount
```
public int getChannelCount(int imageIndex)
```
Specified by:

getChannelCount in interface MetadataRetrieve

getCommentAnnotationCount
```
public int getCommentAnnotationCount()
```
Specified by:

getCommentAnnotationCount in interface MetadataRetrieve

getDatasetCount
```
public int getDatasetCount()
```
Specified by:

getDatasetCount in interface MetadataRetrieve

getDatasetRefCount
```
public int getDatasetRefCount(int projectIndex)
```
Specified by:

getDatasetRefCount in interface MetadataRetrieve

getDetectorCount
```
public int getDetectorCount(int instrumentIndex)
```
Specified by:

getDetectorCount in interface MetadataRetrieve

getDichroicCount
```
public int getDichroicCount(int instrumentIndex)
```
Specified by:

getDichroicCount in interface MetadataRetrieve

getDoubleAnnotationCount
```
public int getDoubleAnnotationCount()
```
Specified by:

getDoubleAnnotationCount in interface MetadataRetrieve

getLightPathEmissionFilterRefCount

public int getLightPathEmissionFilterRefCount(int imageIndex,
                                     int channelIndex)

Specified by:: getLightPathEmissionFilterRefCount in interface MetadataRetrieve

getFilterSetEmissionFilterRefCount

public int getFilterSetEmissionFilterRefCount(int instrumentIndex,
                                     int filterSetIndex)

Specified by:: getFilterSetEmissionFilterRefCount in interface MetadataRetrieve

getLightPathExcitationFilterRefCount

public int getLightPathExcitationFilterRefCount(int imageIndex,
                                       int channelIndex)

Specified by:: getLightPathExcitationFilterRefCount in interface MetadataRetrieve

getFilterSetExcitationFilterRefCount

public int getFilterSetExcitationFilterRefCount(int instrumentIndex,
                                       int filterSetIndex)

Specified by:: getFilterSetExcitationFilterRefCount in interface MetadataRetrieve

getExperimentCount
```
public int getExperimentCount()
```
Specified by:

getExperimentCount in interface MetadataRetrieve

getExperimenterCount
```
public int getExperimenterCount()
```
Specified by:

getExperimenterCount in interface MetadataRetrieve

getExperimenterGroupCount
```
public int getExperimenterGroupCount()
```
Specified by:

getExperimenterGroupCount in interface MetadataRetrieve

getExperimenterGroupExperimenterRefCount
```
public int getExperimenterGroupExperimenterRefCount(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupExperimenterRefCount in interface MetadataRetrieve

getFileAnnotationCount
```
public int getFileAnnotationCount()
```
Specified by:

getFileAnnotationCount in interface MetadataRetrieve

getFilterCount
```
public int getFilterCount(int instrumentIndex)
```
Specified by:

getFilterCount in interface MetadataRetrieve

getFilterSetCount
```
public int getFilterSetCount(int instrumentIndex)
```
Specified by:

getFilterSetCount in interface MetadataRetrieve

getImageCount
```
public int getImageCount()
```
Specified by:

getImageCount in interface MetadataRetrieve

getDatasetImageRefCount
```
public int getDatasetImageRefCount(int datasetIndex)
```
Specified by:

getDatasetImageRefCount in interface MetadataRetrieve

getInstrumentCount
```
public int getInstrumentCount()
```
Specified by:

getInstrumentCount in interface MetadataRetrieve

getLeaderCount
```
public int getLeaderCount(int experimenterGroupIndex)
```
Specified by:

getLeaderCount in interface MetadataRetrieve

getLightSourceCount
```
public int getLightSourceCount(int instrumentIndex)
```
Specified by:

getLightSourceCount in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsCount

public int getMicrobeamManipulationLightSourceSettingsCount(int experimentIndex,
                                                   int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsCount in interface MetadataRetrieve

getListAnnotationCount
```
public int getListAnnotationCount()
```
Specified by:

getListAnnotationCount in interface MetadataRetrieve

getLongAnnotationCount
```
public int getLongAnnotationCount()
```
Specified by:

getLongAnnotationCount in interface MetadataRetrieve

getMicrobeamManipulationCount
```
public int getMicrobeamManipulationCount(int experimentIndex)
```
Specified by:

getMicrobeamManipulationCount in interface MetadataRetrieve

getMicrobeamManipulationRefCount
```
public int getMicrobeamManipulationRefCount(int imageIndex)
```
Specified by:

getMicrobeamManipulationRefCount in interface MetadataRetrieve

getObjectiveCount
```
public int getObjectiveCount(int instrumentIndex)
```
Specified by:

getObjectiveCount in interface MetadataRetrieve

getPlaneCount
```
public int getPlaneCount(int imageIndex)
```
Specified by:

getPlaneCount in interface MetadataRetrieve

getPlateCount
```
public int getPlateCount()
```
Specified by:

getPlateCount in interface MetadataRetrieve

getPlateAcquisitionCount
```
public int getPlateAcquisitionCount(int plateIndex)
```
Specified by:

getPlateAcquisitionCount in interface MetadataRetrieve

getPlateRefCount
```
public int getPlateRefCount(int screenIndex)
```
Specified by:

getPlateRefCount in interface MetadataRetrieve

getProjectCount
```
public int getProjectCount()
```
Specified by:

getProjectCount in interface MetadataRetrieve

getROICount
```
public int getROICount()
```
Specified by:

getROICount in interface MetadataRetrieve

getImageROIRefCount
```
public int getImageROIRefCount(int imageIndex)
```
Specified by:

getImageROIRefCount in interface MetadataRetrieve

getMicrobeamManipulationROIRefCount

public int getMicrobeamManipulationROIRefCount(int experimentIndex,
                                      int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationROIRefCount in interface MetadataRetrieve

getReagentCount
```
public int getReagentCount(int screenIndex)
```
Specified by:

getReagentCount in interface MetadataRetrieve

getScreenCount
```
public int getScreenCount()
```
Specified by:

getScreenCount in interface MetadataRetrieve

getShapeCount
```
public int getShapeCount(int ROIIndex)
```
Specified by:

getShapeCount in interface MetadataRetrieve

getTagAnnotationCount
```
public int getTagAnnotationCount()
```
Specified by:

getTagAnnotationCount in interface MetadataRetrieve

getTermAnnotationCount
```
public int getTermAnnotationCount()
```
Specified by:

getTermAnnotationCount in interface MetadataRetrieve

getTiffDataCount
```
public int getTiffDataCount(int imageIndex)
```
Specified by:

getTiffDataCount in interface MetadataRetrieve

getTimestampAnnotationCount
```
public int getTimestampAnnotationCount()
```
Specified by:

getTimestampAnnotationCount in interface MetadataRetrieve

setUUIDValue

public void setUUIDValue(String value,
                int imageIndex,
                int tiffDataIndex)

Specified by:: setUUIDValue in interface MetadataStore

getUUIDValue

public String getUUIDValue(int imageIndex,
                  int tiffDataIndex)

Specified by:: getUUIDValue in interface MetadataRetrieve

getWellCount
```
public int getWellCount(int plateIndex)
```
Specified by:

getWellCount in interface MetadataRetrieve

getWellSampleCount

public int getWellSampleCount(int plateIndex,
                     int wellIndex)

Specified by:: getWellSampleCount in interface MetadataRetrieve

getWellSampleRefCount

public int getWellSampleRefCount(int plateIndex,
                        int plateAcquisitionIndex)

Specified by:: getWellSampleRefCount in interface MetadataRetrieve

getXMLAnnotationCount
```
public int getXMLAnnotationCount()
```
Specified by:

getXMLAnnotationCount in interface MetadataRetrieve

getPixelsBinDataBigEndian

public Boolean getPixelsBinDataBigEndian(int imageIndex,
                                int binDataIndex)

Specified by:: getPixelsBinDataBigEndian in interface MetadataRetrieve

getUUID
```
public String getUUID()
```
Gets the UUID associated with this collection of metadata.

Specified by:

getUUID in interface MetadataRetrieve

getArcID

public String getArcID(int instrumentIndex,
              int lightSourceIndex)

Specified by:: getArcID in interface MetadataRetrieve

getArcLotNumber

public String getArcLotNumber(int instrumentIndex,
                     int lightSourceIndex)

Specified by:: getArcLotNumber in interface MetadataRetrieve

getArcManufacturer

public String getArcManufacturer(int instrumentIndex,
                        int lightSourceIndex)

Specified by:: getArcManufacturer in interface MetadataRetrieve

getArcModel

public String getArcModel(int instrumentIndex,
                 int lightSourceIndex)

Specified by:: getArcModel in interface MetadataRetrieve

getArcPower

public Double getArcPower(int instrumentIndex,
                 int lightSourceIndex)

Specified by:: getArcPower in interface MetadataRetrieve

getArcSerialNumber

public String getArcSerialNumber(int instrumentIndex,
                        int lightSourceIndex)

Specified by:: getArcSerialNumber in interface MetadataRetrieve

getArcType

public ArcType getArcType(int instrumentIndex,
                 int lightSourceIndex)

Specified by:: getArcType in interface MetadataRetrieve

getBinaryFileFileName
```
public String getBinaryFileFileName(int fileAnnotationIndex)
```
Specified by:

getBinaryFileFileName in interface MetadataRetrieve

getBinaryFileMIMEType
```
public String getBinaryFileMIMEType(int fileAnnotationIndex)
```
Specified by:

getBinaryFileMIMEType in interface MetadataRetrieve

getBinaryFileSize
```
public NonNegativeLong getBinaryFileSize(int fileAnnotationIndex)
```
Specified by:

getBinaryFileSize in interface MetadataRetrieve

getBinaryOnlyMetadataFile
```
public String getBinaryOnlyMetadataFile(int metadataFileIndex)
```
Specified by:

getBinaryOnlyMetadataFile in interface MetadataRetrieve

getBinaryOnlyUUID
```
public String getBinaryOnlyUUID(int UUIDIndex)
```
Specified by:

getBinaryOnlyUUID in interface MetadataRetrieve

getBooleanAnnotationAnnotationRef

public String getBooleanAnnotationAnnotationRef(int booleanAnnotationIndex,
                                       int annotationRefIndex)

Specified by:: getBooleanAnnotationAnnotationRef in interface MetadataRetrieve

getBooleanAnnotationAnnotator
```
public String getBooleanAnnotationAnnotator(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationAnnotator in interface MetadataRetrieve

getBooleanAnnotationDescription
```
public String getBooleanAnnotationDescription(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationDescription in interface MetadataRetrieve

getBooleanAnnotationID
```
public String getBooleanAnnotationID(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationID in interface MetadataRetrieve

getBooleanAnnotationNamespace
```
public String getBooleanAnnotationNamespace(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationNamespace in interface MetadataRetrieve

getBooleanAnnotationValue
```
public Boolean getBooleanAnnotationValue(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationValue in interface MetadataRetrieve

getChannelAcquisitionMode

public AcquisitionMode getChannelAcquisitionMode(int imageIndex,
                                        int channelIndex)

Specified by:: getChannelAcquisitionMode in interface MetadataRetrieve

getChannelAnnotationRef

public String getChannelAnnotationRef(int imageIndex,
                             int channelIndex,
                             int annotationRefIndex)

Specified by:: getChannelAnnotationRef in interface MetadataRetrieve

getChannelColor

public Color getChannelColor(int imageIndex,
                    int channelIndex)

Specified by:: getChannelColor in interface MetadataRetrieve

getChannelContrastMethod

public ContrastMethod getChannelContrastMethod(int imageIndex,
                                      int channelIndex)

Specified by:: getChannelContrastMethod in interface MetadataRetrieve

getChannelEmissionWavelength

public PositiveInteger getChannelEmissionWavelength(int imageIndex,
                                           int channelIndex)

Specified by:: getChannelEmissionWavelength in interface MetadataRetrieve

getChannelExcitationWavelength

public PositiveInteger getChannelExcitationWavelength(int imageIndex,
                                             int channelIndex)

Specified by:: getChannelExcitationWavelength in interface MetadataRetrieve

getChannelFilterSetRef

public String getChannelFilterSetRef(int imageIndex,
                            int channelIndex)

Specified by:: getChannelFilterSetRef in interface MetadataRetrieve

getChannelFluor

public String getChannelFluor(int imageIndex,
                     int channelIndex)

Specified by:: getChannelFluor in interface MetadataRetrieve

getChannelID

public String getChannelID(int imageIndex,
                  int channelIndex)

Specified by:: getChannelID in interface MetadataRetrieve

getChannelIlluminationType

public IlluminationType getChannelIlluminationType(int imageIndex,
                                          int channelIndex)

Specified by:: getChannelIlluminationType in interface MetadataRetrieve

getChannelNDFilter

public Double getChannelNDFilter(int imageIndex,
                        int channelIndex)

Specified by:: getChannelNDFilter in interface MetadataRetrieve

getChannelName

public String getChannelName(int imageIndex,
                    int channelIndex)

Specified by:: getChannelName in interface MetadataRetrieve

getChannelPinholeSize

public Double getChannelPinholeSize(int imageIndex,
                           int channelIndex)

Specified by:: getChannelPinholeSize in interface MetadataRetrieve

getChannelPockelCellSetting

public Integer getChannelPockelCellSetting(int imageIndex,
                                  int channelIndex)

Specified by:: getChannelPockelCellSetting in interface MetadataRetrieve

getChannelSamplesPerPixel

public PositiveInteger getChannelSamplesPerPixel(int imageIndex,
                                        int channelIndex)

Specified by:: getChannelSamplesPerPixel in interface MetadataRetrieve

getCommentAnnotationAnnotationRef

public String getCommentAnnotationAnnotationRef(int commentAnnotationIndex,
                                       int annotationRefIndex)

Specified by:: getCommentAnnotationAnnotationRef in interface MetadataRetrieve

getCommentAnnotationAnnotator
```
public String getCommentAnnotationAnnotator(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationAnnotator in interface MetadataRetrieve

getCommentAnnotationDescription
```
public String getCommentAnnotationDescription(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationDescription in interface MetadataRetrieve

getCommentAnnotationID
```
public String getCommentAnnotationID(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationID in interface MetadataRetrieve

getCommentAnnotationNamespace
```
public String getCommentAnnotationNamespace(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationNamespace in interface MetadataRetrieve

getCommentAnnotationValue
```
public String getCommentAnnotationValue(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationValue in interface MetadataRetrieve

getDatasetAnnotationRef

public String getDatasetAnnotationRef(int datasetIndex,
                             int annotationRefIndex)

Specified by:: getDatasetAnnotationRef in interface MetadataRetrieve

getDatasetDescription
```
public String getDatasetDescription(int datasetIndex)
```
Specified by:

getDatasetDescription in interface MetadataRetrieve

getDatasetExperimenterGroupRef
```
public String getDatasetExperimenterGroupRef(int datasetIndex)
```
Specified by:

getDatasetExperimenterGroupRef in interface MetadataRetrieve

getDatasetExperimenterRef
```
public String getDatasetExperimenterRef(int datasetIndex)
```
Specified by:

getDatasetExperimenterRef in interface MetadataRetrieve

getDatasetID
```
public String getDatasetID(int datasetIndex)
```
Specified by:

getDatasetID in interface MetadataRetrieve

getDatasetImageRef

public String getDatasetImageRef(int datasetIndex,
                        int imageRefIndex)

Specified by:: getDatasetImageRef in interface MetadataRetrieve

getDatasetName
```
public String getDatasetName(int datasetIndex)
```
Specified by:

getDatasetName in interface MetadataRetrieve

getDetectorAmplificationGain

public Double getDetectorAmplificationGain(int instrumentIndex,
                                  int detectorIndex)

Specified by:: getDetectorAmplificationGain in interface MetadataRetrieve

getDetectorGain

public Double getDetectorGain(int instrumentIndex,
                     int detectorIndex)

Specified by:: getDetectorGain in interface MetadataRetrieve

getDetectorID

public String getDetectorID(int instrumentIndex,
                   int detectorIndex)

Specified by:: getDetectorID in interface MetadataRetrieve

getDetectorLotNumber

public String getDetectorLotNumber(int instrumentIndex,
                          int detectorIndex)

Specified by:: getDetectorLotNumber in interface MetadataRetrieve

getDetectorManufacturer

public String getDetectorManufacturer(int instrumentIndex,
                             int detectorIndex)

Specified by:: getDetectorManufacturer in interface MetadataRetrieve

getDetectorModel

public String getDetectorModel(int instrumentIndex,
                      int detectorIndex)

Specified by:: getDetectorModel in interface MetadataRetrieve

getDetectorOffset

public Double getDetectorOffset(int instrumentIndex,
                       int detectorIndex)

Specified by:: getDetectorOffset in interface MetadataRetrieve

getDetectorSerialNumber

public String getDetectorSerialNumber(int instrumentIndex,
                             int detectorIndex)

Specified by:: getDetectorSerialNumber in interface MetadataRetrieve

getDetectorType

public DetectorType getDetectorType(int instrumentIndex,
                           int detectorIndex)

Specified by:: getDetectorType in interface MetadataRetrieve

getDetectorVoltage

public Double getDetectorVoltage(int instrumentIndex,
                        int detectorIndex)

Specified by:: getDetectorVoltage in interface MetadataRetrieve

getDetectorZoom

public Double getDetectorZoom(int instrumentIndex,
                     int detectorIndex)

Specified by:: getDetectorZoom in interface MetadataRetrieve

getDetectorSettingsBinning

public Binning getDetectorSettingsBinning(int imageIndex,
                                 int channelIndex)

Specified by:: getDetectorSettingsBinning in interface MetadataRetrieve

getDetectorSettingsGain

public Double getDetectorSettingsGain(int imageIndex,
                             int channelIndex)

Specified by:: getDetectorSettingsGain in interface MetadataRetrieve

getDetectorSettingsID

public String getDetectorSettingsID(int imageIndex,
                           int channelIndex)

Specified by:: getDetectorSettingsID in interface MetadataRetrieve

getDetectorSettingsIntegration

public PositiveInteger getDetectorSettingsIntegration(int imageIndex,
                                             int channelIndex)

Specified by:: getDetectorSettingsIntegration in interface MetadataRetrieve

getDetectorSettingsOffset

public Double getDetectorSettingsOffset(int imageIndex,
                               int channelIndex)

Specified by:: getDetectorSettingsOffset in interface MetadataRetrieve

getDetectorSettingsReadOutRate

public Double getDetectorSettingsReadOutRate(int imageIndex,
                                    int channelIndex)

Specified by:: getDetectorSettingsReadOutRate in interface MetadataRetrieve

getDetectorSettingsVoltage

public Double getDetectorSettingsVoltage(int imageIndex,
                                int channelIndex)

Specified by:: getDetectorSettingsVoltage in interface MetadataRetrieve

getDetectorSettingsZoom

public Double getDetectorSettingsZoom(int imageIndex,
                             int channelIndex)

Specified by:: getDetectorSettingsZoom in interface MetadataRetrieve

getDichroicID

public String getDichroicID(int instrumentIndex,
                   int dichroicIndex)

Specified by:: getDichroicID in interface MetadataRetrieve

getDichroicLotNumber

public String getDichroicLotNumber(int instrumentIndex,
                          int dichroicIndex)

Specified by:: getDichroicLotNumber in interface MetadataRetrieve

getDichroicManufacturer

public String getDichroicManufacturer(int instrumentIndex,
                             int dichroicIndex)

Specified by:: getDichroicManufacturer in interface MetadataRetrieve

getDichroicModel

public String getDichroicModel(int instrumentIndex,
                      int dichroicIndex)

Specified by:: getDichroicModel in interface MetadataRetrieve

getDichroicSerialNumber

public String getDichroicSerialNumber(int instrumentIndex,
                             int dichroicIndex)

Specified by:: getDichroicSerialNumber in interface MetadataRetrieve

getDoubleAnnotationAnnotationRef

public String getDoubleAnnotationAnnotationRef(int doubleAnnotationIndex,
                                      int annotationRefIndex)

Specified by:: getDoubleAnnotationAnnotationRef in interface MetadataRetrieve

getDoubleAnnotationAnnotator
```
public String getDoubleAnnotationAnnotator(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationAnnotator in interface MetadataRetrieve

getDoubleAnnotationDescription
```
public String getDoubleAnnotationDescription(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationDescription in interface MetadataRetrieve

getDoubleAnnotationID
```
public String getDoubleAnnotationID(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationID in interface MetadataRetrieve

getDoubleAnnotationNamespace
```
public String getDoubleAnnotationNamespace(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationNamespace in interface MetadataRetrieve

getDoubleAnnotationValue
```
public Double getDoubleAnnotationValue(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationValue in interface MetadataRetrieve

getEllipseFillColor

public Color getEllipseFillColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getEllipseFillColor in interface MetadataRetrieve

getEllipseFillRule

public FillRule getEllipseFillRule(int ROIIndex,
                          int shapeIndex)

Specified by:: getEllipseFillRule in interface MetadataRetrieve

getEllipseFontFamily

public FontFamily getEllipseFontFamily(int ROIIndex,
                              int shapeIndex)

Specified by:: getEllipseFontFamily in interface MetadataRetrieve

getEllipseFontSize

public NonNegativeInteger getEllipseFontSize(int ROIIndex,
                                    int shapeIndex)

Specified by:: getEllipseFontSize in interface MetadataRetrieve

getEllipseFontStyle

public FontStyle getEllipseFontStyle(int ROIIndex,
                            int shapeIndex)

Specified by:: getEllipseFontStyle in interface MetadataRetrieve

getEllipseID

public String getEllipseID(int ROIIndex,
                  int shapeIndex)

Specified by:: getEllipseID in interface MetadataRetrieve

getEllipseLineCap

public LineCap getEllipseLineCap(int ROIIndex,
                        int shapeIndex)

Specified by:: getEllipseLineCap in interface MetadataRetrieve

getEllipseLocked

public Boolean getEllipseLocked(int ROIIndex,
                       int shapeIndex)

Specified by:: getEllipseLocked in interface MetadataRetrieve

getEllipseStrokeColor

public Color getEllipseStrokeColor(int ROIIndex,
                          int shapeIndex)

Specified by:: getEllipseStrokeColor in interface MetadataRetrieve

getEllipseStrokeDashArray

public String getEllipseStrokeDashArray(int ROIIndex,
                               int shapeIndex)

Specified by:: getEllipseStrokeDashArray in interface MetadataRetrieve

getEllipseStrokeWidth

public Double getEllipseStrokeWidth(int ROIIndex,
                           int shapeIndex)

Specified by:: getEllipseStrokeWidth in interface MetadataRetrieve

getEllipseText

public String getEllipseText(int ROIIndex,
                    int shapeIndex)

Specified by:: getEllipseText in interface MetadataRetrieve

getEllipseTheC

public NonNegativeInteger getEllipseTheC(int ROIIndex,
                                int shapeIndex)

Specified by:: getEllipseTheC in interface MetadataRetrieve

getEllipseTheT

public NonNegativeInteger getEllipseTheT(int ROIIndex,
                                int shapeIndex)

Specified by:: getEllipseTheT in interface MetadataRetrieve

getEllipseTheZ

public NonNegativeInteger getEllipseTheZ(int ROIIndex,
                                int shapeIndex)

Specified by:: getEllipseTheZ in interface MetadataRetrieve

getEllipseTransform

public AffineTransform getEllipseTransform(int ROIIndex,
                                  int shapeIndex)

Specified by:: getEllipseTransform in interface MetadataRetrieve

getEllipseVisible

public Boolean getEllipseVisible(int ROIIndex,
                        int shapeIndex)

Specified by:: getEllipseVisible in interface MetadataRetrieve

getEllipseRadiusX

public Double getEllipseRadiusX(int ROIIndex,
                       int shapeIndex)

Specified by:: getEllipseRadiusX in interface MetadataRetrieve

getEllipseRadiusY

public Double getEllipseRadiusY(int ROIIndex,
                       int shapeIndex)

Specified by:: getEllipseRadiusY in interface MetadataRetrieve

getEllipseX

public Double getEllipseX(int ROIIndex,
                 int shapeIndex)

Specified by:: getEllipseX in interface MetadataRetrieve

getEllipseY

public Double getEllipseY(int ROIIndex,
                 int shapeIndex)

Specified by:: getEllipseY in interface MetadataRetrieve

getExperimentDescription
```
public String getExperimentDescription(int experimentIndex)
```
Specified by:

getExperimentDescription in interface MetadataRetrieve

getExperimentExperimenterRef
```
public String getExperimentExperimenterRef(int experimentIndex)
```
Specified by:

getExperimentExperimenterRef in interface MetadataRetrieve

getExperimentID
```
public String getExperimentID(int experimentIndex)
```
Specified by:

getExperimentID in interface MetadataRetrieve

getExperimentType
```
public ExperimentType getExperimentType(int experimentIndex)
```
Specified by:

getExperimentType in interface MetadataRetrieve

getExperimenterAnnotationRef

public String getExperimenterAnnotationRef(int experimenterIndex,
                                  int annotationRefIndex)

Specified by:: getExperimenterAnnotationRef in interface MetadataRetrieve

getExperimenterEmail
```
public String getExperimenterEmail(int experimenterIndex)
```
Specified by:

getExperimenterEmail in interface MetadataRetrieve

getExperimenterFirstName
```
public String getExperimenterFirstName(int experimenterIndex)
```
Specified by:

getExperimenterFirstName in interface MetadataRetrieve

getExperimenterID
```
public String getExperimenterID(int experimenterIndex)
```
Specified by:

getExperimenterID in interface MetadataRetrieve

getExperimenterInstitution
```
public String getExperimenterInstitution(int experimenterIndex)
```
Specified by:

getExperimenterInstitution in interface MetadataRetrieve

getExperimenterLastName
```
public String getExperimenterLastName(int experimenterIndex)
```
Specified by:

getExperimenterLastName in interface MetadataRetrieve

getExperimenterMiddleName
```
public String getExperimenterMiddleName(int experimenterIndex)
```
Specified by:

getExperimenterMiddleName in interface MetadataRetrieve

getExperimenterUserName
```
public String getExperimenterUserName(int experimenterIndex)
```
Specified by:

getExperimenterUserName in interface MetadataRetrieve

getExperimenterGroupAnnotationRef

public String getExperimenterGroupAnnotationRef(int experimenterGroupIndex,
                                       int annotationRefIndex)

Specified by:: getExperimenterGroupAnnotationRef in interface MetadataRetrieve

getExperimenterGroupDescription
```
public String getExperimenterGroupDescription(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupDescription in interface MetadataRetrieve

getExperimenterGroupExperimenterRef

public String getExperimenterGroupExperimenterRef(int experimenterGroupIndex,
                                         int experimenterRefIndex)

Specified by:: getExperimenterGroupExperimenterRef in interface MetadataRetrieve

getExperimenterGroupID
```
public String getExperimenterGroupID(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupID in interface MetadataRetrieve

getExperimenterGroupLeader

public String getExperimenterGroupLeader(int experimenterGroupIndex,
                                int leaderIndex)

Specified by:: getExperimenterGroupLeader in interface MetadataRetrieve

getExperimenterGroupName
```
public String getExperimenterGroupName(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupName in interface MetadataRetrieve

getFilamentID

public String getFilamentID(int instrumentIndex,
                   int lightSourceIndex)

Specified by:: getFilamentID in interface MetadataRetrieve

getFilamentLotNumber

public String getFilamentLotNumber(int instrumentIndex,
                          int lightSourceIndex)

Specified by:: getFilamentLotNumber in interface MetadataRetrieve

getFilamentManufacturer

public String getFilamentManufacturer(int instrumentIndex,
                             int lightSourceIndex)

Specified by:: getFilamentManufacturer in interface MetadataRetrieve

getFilamentModel

public String getFilamentModel(int instrumentIndex,
                      int lightSourceIndex)

Specified by:: getFilamentModel in interface MetadataRetrieve

getFilamentPower

public Double getFilamentPower(int instrumentIndex,
                      int lightSourceIndex)

Specified by:: getFilamentPower in interface MetadataRetrieve

getFilamentSerialNumber

public String getFilamentSerialNumber(int instrumentIndex,
                             int lightSourceIndex)

Specified by:: getFilamentSerialNumber in interface MetadataRetrieve

getFilamentType

public FilamentType getFilamentType(int instrumentIndex,
                           int lightSourceIndex)

Specified by:: getFilamentType in interface MetadataRetrieve

getFileAnnotationAnnotationRef

public String getFileAnnotationAnnotationRef(int fileAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getFileAnnotationAnnotationRef in interface MetadataRetrieve

getFileAnnotationAnnotator
```
public String getFileAnnotationAnnotator(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationAnnotator in interface MetadataRetrieve

getFileAnnotationDescription
```
public String getFileAnnotationDescription(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationDescription in interface MetadataRetrieve

getFileAnnotationID
```
public String getFileAnnotationID(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationID in interface MetadataRetrieve

getFileAnnotationNamespace
```
public String getFileAnnotationNamespace(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationNamespace in interface MetadataRetrieve

getFilterFilterWheel

public String getFilterFilterWheel(int instrumentIndex,
                          int filterIndex)

Specified by:: getFilterFilterWheel in interface MetadataRetrieve

getFilterID

public String getFilterID(int instrumentIndex,
                 int filterIndex)

Specified by:: getFilterID in interface MetadataRetrieve

getFilterLotNumber

public String getFilterLotNumber(int instrumentIndex,
                        int filterIndex)

Specified by:: getFilterLotNumber in interface MetadataRetrieve

getFilterManufacturer

public String getFilterManufacturer(int instrumentIndex,
                           int filterIndex)

Specified by:: getFilterManufacturer in interface MetadataRetrieve

getFilterModel

public String getFilterModel(int instrumentIndex,
                    int filterIndex)

Specified by:: getFilterModel in interface MetadataRetrieve

getFilterSerialNumber

public String getFilterSerialNumber(int instrumentIndex,
                           int filterIndex)

Specified by:: getFilterSerialNumber in interface MetadataRetrieve

getFilterType

public FilterType getFilterType(int instrumentIndex,
                       int filterIndex)

Specified by:: getFilterType in interface MetadataRetrieve

getFilterSetDichroicRef

public String getFilterSetDichroicRef(int instrumentIndex,
                             int filterSetIndex)

Specified by:: getFilterSetDichroicRef in interface MetadataRetrieve

getFilterSetEmissionFilterRef

public String getFilterSetEmissionFilterRef(int instrumentIndex,
                                   int filterSetIndex,
                                   int emissionFilterRefIndex)

Specified by:: getFilterSetEmissionFilterRef in interface MetadataRetrieve

getFilterSetExcitationFilterRef

public String getFilterSetExcitationFilterRef(int instrumentIndex,
                                     int filterSetIndex,
                                     int excitationFilterRefIndex)

Specified by:: getFilterSetExcitationFilterRef in interface MetadataRetrieve

getFilterSetID

public String getFilterSetID(int instrumentIndex,
                    int filterSetIndex)

Specified by:: getFilterSetID in interface MetadataRetrieve

getFilterSetLotNumber

public String getFilterSetLotNumber(int instrumentIndex,
                           int filterSetIndex)

Specified by:: getFilterSetLotNumber in interface MetadataRetrieve

getFilterSetManufacturer

public String getFilterSetManufacturer(int instrumentIndex,
                              int filterSetIndex)

Specified by:: getFilterSetManufacturer in interface MetadataRetrieve

getFilterSetModel

public String getFilterSetModel(int instrumentIndex,
                       int filterSetIndex)

Specified by:: getFilterSetModel in interface MetadataRetrieve

getFilterSetSerialNumber

public String getFilterSetSerialNumber(int instrumentIndex,
                              int filterSetIndex)

Specified by:: getFilterSetSerialNumber in interface MetadataRetrieve

getImageAcquisitionDate
```
public Timestamp getImageAcquisitionDate(int imageIndex)
```
Specified by:

getImageAcquisitionDate in interface MetadataRetrieve

getImageAnnotationRef

public String getImageAnnotationRef(int imageIndex,
                           int annotationRefIndex)

Specified by:: getImageAnnotationRef in interface MetadataRetrieve

getImageDescription
```
public String getImageDescription(int imageIndex)
```
Specified by:

getImageDescription in interface MetadataRetrieve

getImageExperimentRef
```
public String getImageExperimentRef(int imageIndex)
```
Specified by:

getImageExperimentRef in interface MetadataRetrieve

getImageExperimenterGroupRef
```
public String getImageExperimenterGroupRef(int imageIndex)
```
Specified by:

getImageExperimenterGroupRef in interface MetadataRetrieve

getImageExperimenterRef
```
public String getImageExperimenterRef(int imageIndex)
```
Specified by:

getImageExperimenterRef in interface MetadataRetrieve

getImageID
```
public String getImageID(int imageIndex)
```
Specified by:

getImageID in interface MetadataRetrieve

getImageInstrumentRef
```
public String getImageInstrumentRef(int imageIndex)
```
Specified by:

getImageInstrumentRef in interface MetadataRetrieve

getImageMicrobeamManipulationRef

public String getImageMicrobeamManipulationRef(int imageIndex,
                                      int microbeamManipulationRefIndex)

Specified by:: getImageMicrobeamManipulationRef in interface MetadataRetrieve

getImageName
```
public String getImageName(int imageIndex)
```
Specified by:

getImageName in interface MetadataRetrieve

getImageROIRef

public String getImageROIRef(int imageIndex,
                    int ROIRefIndex)

Specified by:: getImageROIRef in interface MetadataRetrieve

getImagingEnvironmentAirPressure
```
public Double getImagingEnvironmentAirPressure(int imageIndex)
```
Specified by:

getImagingEnvironmentAirPressure in interface MetadataRetrieve

getImagingEnvironmentCO2Percent
```
public PercentFraction getImagingEnvironmentCO2Percent(int imageIndex)
```
Specified by:

getImagingEnvironmentCO2Percent in interface MetadataRetrieve

getImagingEnvironmentHumidity
```
public PercentFraction getImagingEnvironmentHumidity(int imageIndex)
```
Specified by:

getImagingEnvironmentHumidity in interface MetadataRetrieve

getImagingEnvironmentTemperature
```
public Double getImagingEnvironmentTemperature(int imageIndex)
```
Specified by:

getImagingEnvironmentTemperature in interface MetadataRetrieve

getInstrumentID
```
public String getInstrumentID(int instrumentIndex)
```
Specified by:

getInstrumentID in interface MetadataRetrieve

getLabelFillColor

public Color getLabelFillColor(int ROIIndex,
                      int shapeIndex)

Specified by:: getLabelFillColor in interface MetadataRetrieve

getLabelFillRule

public FillRule getLabelFillRule(int ROIIndex,
                        int shapeIndex)

Specified by:: getLabelFillRule in interface MetadataRetrieve

getLabelFontFamily

public FontFamily getLabelFontFamily(int ROIIndex,
                            int shapeIndex)

Specified by:: getLabelFontFamily in interface MetadataRetrieve

getLabelFontSize

public NonNegativeInteger getLabelFontSize(int ROIIndex,
                                  int shapeIndex)

Specified by:: getLabelFontSize in interface MetadataRetrieve

getLabelFontStyle

public FontStyle getLabelFontStyle(int ROIIndex,
                          int shapeIndex)

Specified by:: getLabelFontStyle in interface MetadataRetrieve

getLabelID

public String getLabelID(int ROIIndex,
                int shapeIndex)

Specified by:: getLabelID in interface MetadataRetrieve

getLabelLineCap

public LineCap getLabelLineCap(int ROIIndex,
                      int shapeIndex)

Specified by:: getLabelLineCap in interface MetadataRetrieve

getLabelLocked

public Boolean getLabelLocked(int ROIIndex,
                     int shapeIndex)

Specified by:: getLabelLocked in interface MetadataRetrieve

getLabelStrokeColor

public Color getLabelStrokeColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getLabelStrokeColor in interface MetadataRetrieve

getLabelStrokeDashArray

public String getLabelStrokeDashArray(int ROIIndex,
                             int shapeIndex)

Specified by:: getLabelStrokeDashArray in interface MetadataRetrieve

getLabelStrokeWidth

public Double getLabelStrokeWidth(int ROIIndex,
                         int shapeIndex)

Specified by:: getLabelStrokeWidth in interface MetadataRetrieve

getLabelText

public String getLabelText(int ROIIndex,
                  int shapeIndex)

Specified by:: getLabelText in interface MetadataRetrieve

getLabelTheC

public NonNegativeInteger getLabelTheC(int ROIIndex,
                              int shapeIndex)

Specified by:: getLabelTheC in interface MetadataRetrieve

getLabelTheT

public NonNegativeInteger getLabelTheT(int ROIIndex,
                              int shapeIndex)

Specified by:: getLabelTheT in interface MetadataRetrieve

getLabelTheZ

public NonNegativeInteger getLabelTheZ(int ROIIndex,
                              int shapeIndex)

Specified by:: getLabelTheZ in interface MetadataRetrieve

getLabelTransform

public AffineTransform getLabelTransform(int ROIIndex,
                                int shapeIndex)

Specified by:: getLabelTransform in interface MetadataRetrieve

getLabelVisible

public Boolean getLabelVisible(int ROIIndex,
                      int shapeIndex)

Specified by:: getLabelVisible in interface MetadataRetrieve

getLabelX

public Double getLabelX(int ROIIndex,
               int shapeIndex)

Specified by:: getLabelX in interface MetadataRetrieve

getLabelY

public Double getLabelY(int ROIIndex,
               int shapeIndex)

Specified by:: getLabelY in interface MetadataRetrieve

getLaserID

public String getLaserID(int instrumentIndex,
                int lightSourceIndex)

Specified by:: getLaserID in interface MetadataRetrieve

getLaserLotNumber

public String getLaserLotNumber(int instrumentIndex,
                       int lightSourceIndex)

Specified by:: getLaserLotNumber in interface MetadataRetrieve

getLaserManufacturer

public String getLaserManufacturer(int instrumentIndex,
                          int lightSourceIndex)

Specified by:: getLaserManufacturer in interface MetadataRetrieve

getLaserModel

public String getLaserModel(int instrumentIndex,
                   int lightSourceIndex)

Specified by:: getLaserModel in interface MetadataRetrieve

getLaserPower

public Double getLaserPower(int instrumentIndex,
                   int lightSourceIndex)

Specified by:: getLaserPower in interface MetadataRetrieve

getLaserSerialNumber

public String getLaserSerialNumber(int instrumentIndex,
                          int lightSourceIndex)

Specified by:: getLaserSerialNumber in interface MetadataRetrieve

getLaserFrequencyMultiplication

public PositiveInteger getLaserFrequencyMultiplication(int instrumentIndex,
                                              int lightSourceIndex)

Specified by:: getLaserFrequencyMultiplication in interface MetadataRetrieve

getLaserLaserMedium

public LaserMedium getLaserLaserMedium(int instrumentIndex,
                              int lightSourceIndex)

Specified by:: getLaserLaserMedium in interface MetadataRetrieve

getLaserPockelCell

public Boolean getLaserPockelCell(int instrumentIndex,
                         int lightSourceIndex)

Specified by:: getLaserPockelCell in interface MetadataRetrieve

getLaserPulse

public Pulse getLaserPulse(int instrumentIndex,
                  int lightSourceIndex)

Specified by:: getLaserPulse in interface MetadataRetrieve

getLaserPump

public String getLaserPump(int instrumentIndex,
                  int lightSourceIndex)

Specified by:: getLaserPump in interface MetadataRetrieve

getLaserRepetitionRate

public Double getLaserRepetitionRate(int instrumentIndex,
                            int lightSourceIndex)

Specified by:: getLaserRepetitionRate in interface MetadataRetrieve

getLaserTuneable

public Boolean getLaserTuneable(int instrumentIndex,
                       int lightSourceIndex)

Specified by:: getLaserTuneable in interface MetadataRetrieve

getLaserType

public LaserType getLaserType(int instrumentIndex,
                     int lightSourceIndex)

Specified by:: getLaserType in interface MetadataRetrieve

getLaserWavelength

public PositiveInteger getLaserWavelength(int instrumentIndex,
                                 int lightSourceIndex)

Specified by:: getLaserWavelength in interface MetadataRetrieve

getLightEmittingDiodeID

public String getLightEmittingDiodeID(int instrumentIndex,
                             int lightSourceIndex)

Specified by:: getLightEmittingDiodeID in interface MetadataRetrieve

getLightEmittingDiodeLotNumber

public String getLightEmittingDiodeLotNumber(int instrumentIndex,
                                    int lightSourceIndex)

Specified by:: getLightEmittingDiodeLotNumber in interface MetadataRetrieve

getLightEmittingDiodeManufacturer

public String getLightEmittingDiodeManufacturer(int instrumentIndex,
                                       int lightSourceIndex)

Specified by:: getLightEmittingDiodeManufacturer in interface MetadataRetrieve

getLightEmittingDiodeModel

public String getLightEmittingDiodeModel(int instrumentIndex,
                                int lightSourceIndex)

Specified by:: getLightEmittingDiodeModel in interface MetadataRetrieve

getLightEmittingDiodePower

public Double getLightEmittingDiodePower(int instrumentIndex,
                                int lightSourceIndex)

Specified by:: getLightEmittingDiodePower in interface MetadataRetrieve

getLightEmittingDiodeSerialNumber

public String getLightEmittingDiodeSerialNumber(int instrumentIndex,
                                       int lightSourceIndex)

Specified by:: getLightEmittingDiodeSerialNumber in interface MetadataRetrieve

getLightPathDichroicRef

public String getLightPathDichroicRef(int imageIndex,
                             int channelIndex)

Specified by:: getLightPathDichroicRef in interface MetadataRetrieve

getLightPathEmissionFilterRef

public String getLightPathEmissionFilterRef(int imageIndex,
                                   int channelIndex,
                                   int emissionFilterRefIndex)

Specified by:: getLightPathEmissionFilterRef in interface MetadataRetrieve

getLightPathExcitationFilterRef

public String getLightPathExcitationFilterRef(int imageIndex,
                                     int channelIndex,
                                     int excitationFilterRefIndex)

Specified by:: getLightPathExcitationFilterRef in interface MetadataRetrieve

getChannelLightSourceSettingsAttenuation

public PercentFraction getChannelLightSourceSettingsAttenuation(int imageIndex,
                                                       int channelIndex)

Specified by:: getChannelLightSourceSettingsAttenuation in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsAttenuation

public PercentFraction getMicrobeamManipulationLightSourceSettingsAttenuation(int experimentIndex,
                                                                     int microbeamManipulationIndex,
                                                                     int lightSourceSettingsIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataRetrieve

getChannelLightSourceSettingsID

public String getChannelLightSourceSettingsID(int imageIndex,
                                     int channelIndex)

Specified by:: getChannelLightSourceSettingsID in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsID

public String getMicrobeamManipulationLightSourceSettingsID(int experimentIndex,
                                                   int microbeamManipulationIndex,
                                                   int lightSourceSettingsIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsID in interface MetadataRetrieve

getChannelLightSourceSettingsWavelength

public PositiveInteger getChannelLightSourceSettingsWavelength(int imageIndex,
                                                      int channelIndex)

Specified by:: getChannelLightSourceSettingsWavelength in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsWavelength

public PositiveInteger getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex,
                                                                    int microbeamManipulationIndex,
                                                                    int lightSourceSettingsIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataRetrieve

getLineFillColor

public Color getLineFillColor(int ROIIndex,
                     int shapeIndex)

Specified by:: getLineFillColor in interface MetadataRetrieve

getLineFillRule

public FillRule getLineFillRule(int ROIIndex,
                       int shapeIndex)

Specified by:: getLineFillRule in interface MetadataRetrieve

getLineFontFamily

public FontFamily getLineFontFamily(int ROIIndex,
                           int shapeIndex)

Specified by:: getLineFontFamily in interface MetadataRetrieve

getLineFontSize

public NonNegativeInteger getLineFontSize(int ROIIndex,
                                 int shapeIndex)

Specified by:: getLineFontSize in interface MetadataRetrieve

getLineFontStyle

public FontStyle getLineFontStyle(int ROIIndex,
                         int shapeIndex)

Specified by:: getLineFontStyle in interface MetadataRetrieve

getLineID

public String getLineID(int ROIIndex,
               int shapeIndex)

Specified by:: getLineID in interface MetadataRetrieve

getLineLineCap

public LineCap getLineLineCap(int ROIIndex,
                     int shapeIndex)

Specified by:: getLineLineCap in interface MetadataRetrieve

getLineLocked

public Boolean getLineLocked(int ROIIndex,
                    int shapeIndex)

Specified by:: getLineLocked in interface MetadataRetrieve

getLineStrokeColor

public Color getLineStrokeColor(int ROIIndex,
                       int shapeIndex)

Specified by:: getLineStrokeColor in interface MetadataRetrieve

getLineStrokeDashArray

public String getLineStrokeDashArray(int ROIIndex,
                            int shapeIndex)

Specified by:: getLineStrokeDashArray in interface MetadataRetrieve

getLineStrokeWidth

public Double getLineStrokeWidth(int ROIIndex,
                        int shapeIndex)

Specified by:: getLineStrokeWidth in interface MetadataRetrieve

getLineText

public String getLineText(int ROIIndex,
                 int shapeIndex)

Specified by:: getLineText in interface MetadataRetrieve

getLineTheC

public NonNegativeInteger getLineTheC(int ROIIndex,
                             int shapeIndex)

Specified by:: getLineTheC in interface MetadataRetrieve

getLineTheT

public NonNegativeInteger getLineTheT(int ROIIndex,
                             int shapeIndex)

Specified by:: getLineTheT in interface MetadataRetrieve

getLineTheZ

public NonNegativeInteger getLineTheZ(int ROIIndex,
                             int shapeIndex)

Specified by:: getLineTheZ in interface MetadataRetrieve

getLineTransform

public AffineTransform getLineTransform(int ROIIndex,
                               int shapeIndex)

Specified by:: getLineTransform in interface MetadataRetrieve

getLineVisible

public Boolean getLineVisible(int ROIIndex,
                     int shapeIndex)

Specified by:: getLineVisible in interface MetadataRetrieve

getLineMarkerEnd

public Marker getLineMarkerEnd(int ROIIndex,
                      int shapeIndex)

Specified by:: getLineMarkerEnd in interface MetadataRetrieve

getLineMarkerStart

public Marker getLineMarkerStart(int ROIIndex,
                        int shapeIndex)

Specified by:: getLineMarkerStart in interface MetadataRetrieve

getLineX1

public Double getLineX1(int ROIIndex,
               int shapeIndex)

Specified by:: getLineX1 in interface MetadataRetrieve

getLineX2

public Double getLineX2(int ROIIndex,
               int shapeIndex)

Specified by:: getLineX2 in interface MetadataRetrieve

getLineY1

public Double getLineY1(int ROIIndex,
               int shapeIndex)

Specified by:: getLineY1 in interface MetadataRetrieve

getLineY2

public Double getLineY2(int ROIIndex,
               int shapeIndex)

Specified by:: getLineY2 in interface MetadataRetrieve

getListAnnotationAnnotationRef

public String getListAnnotationAnnotationRef(int listAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getListAnnotationAnnotationRef in interface MetadataRetrieve

getListAnnotationAnnotator
```
public String getListAnnotationAnnotator(int listAnnotationIndex)
```
Specified by:

getListAnnotationAnnotator in interface MetadataRetrieve

getListAnnotationDescription
```
public String getListAnnotationDescription(int listAnnotationIndex)
```
Specified by:

getListAnnotationDescription in interface MetadataRetrieve

getListAnnotationID
```
public String getListAnnotationID(int listAnnotationIndex)
```
Specified by:

getListAnnotationID in interface MetadataRetrieve

getListAnnotationNamespace
```
public String getListAnnotationNamespace(int listAnnotationIndex)
```
Specified by:

getListAnnotationNamespace in interface MetadataRetrieve

getLongAnnotationAnnotationRef

public String getLongAnnotationAnnotationRef(int longAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getLongAnnotationAnnotationRef in interface MetadataRetrieve

getLongAnnotationAnnotator
```
public String getLongAnnotationAnnotator(int longAnnotationIndex)
```
Specified by:

getLongAnnotationAnnotator in interface MetadataRetrieve

getLongAnnotationDescription
```
public String getLongAnnotationDescription(int longAnnotationIndex)
```
Specified by:

getLongAnnotationDescription in interface MetadataRetrieve

getLongAnnotationID
```
public String getLongAnnotationID(int longAnnotationIndex)
```
Specified by:

getLongAnnotationID in interface MetadataRetrieve

getLongAnnotationNamespace
```
public String getLongAnnotationNamespace(int longAnnotationIndex)
```
Specified by:

getLongAnnotationNamespace in interface MetadataRetrieve

getLongAnnotationValue
```
public Long getLongAnnotationValue(int longAnnotationIndex)
```
Specified by:

getLongAnnotationValue in interface MetadataRetrieve

getMaskFillColor

public Color getMaskFillColor(int ROIIndex,
                     int shapeIndex)

Specified by:: getMaskFillColor in interface MetadataRetrieve

getMaskFillRule

public FillRule getMaskFillRule(int ROIIndex,
                       int shapeIndex)

Specified by:: getMaskFillRule in interface MetadataRetrieve

getMaskFontFamily

public FontFamily getMaskFontFamily(int ROIIndex,
                           int shapeIndex)

Specified by:: getMaskFontFamily in interface MetadataRetrieve

getMaskFontSize

public NonNegativeInteger getMaskFontSize(int ROIIndex,
                                 int shapeIndex)

Specified by:: getMaskFontSize in interface MetadataRetrieve

getMaskFontStyle

public FontStyle getMaskFontStyle(int ROIIndex,
                         int shapeIndex)

Specified by:: getMaskFontStyle in interface MetadataRetrieve

getMaskID

public String getMaskID(int ROIIndex,
               int shapeIndex)

Specified by:: getMaskID in interface MetadataRetrieve

getMaskLineCap

public LineCap getMaskLineCap(int ROIIndex,
                     int shapeIndex)

Specified by:: getMaskLineCap in interface MetadataRetrieve

getMaskLocked

public Boolean getMaskLocked(int ROIIndex,
                    int shapeIndex)

Specified by:: getMaskLocked in interface MetadataRetrieve

getMaskStrokeColor

public Color getMaskStrokeColor(int ROIIndex,
                       int shapeIndex)

Specified by:: getMaskStrokeColor in interface MetadataRetrieve

getMaskStrokeDashArray

public String getMaskStrokeDashArray(int ROIIndex,
                            int shapeIndex)

Specified by:: getMaskStrokeDashArray in interface MetadataRetrieve

getMaskStrokeWidth

public Double getMaskStrokeWidth(int ROIIndex,
                        int shapeIndex)

Specified by:: getMaskStrokeWidth in interface MetadataRetrieve

getMaskText

public String getMaskText(int ROIIndex,
                 int shapeIndex)

Specified by:: getMaskText in interface MetadataRetrieve

getMaskTheC

public NonNegativeInteger getMaskTheC(int ROIIndex,
                             int shapeIndex)

Specified by:: getMaskTheC in interface MetadataRetrieve

getMaskTheT

public NonNegativeInteger getMaskTheT(int ROIIndex,
                             int shapeIndex)

Specified by:: getMaskTheT in interface MetadataRetrieve

getMaskTheZ

public NonNegativeInteger getMaskTheZ(int ROIIndex,
                             int shapeIndex)

Specified by:: getMaskTheZ in interface MetadataRetrieve

getMaskTransform

public AffineTransform getMaskTransform(int ROIIndex,
                               int shapeIndex)

Specified by:: getMaskTransform in interface MetadataRetrieve

getMaskVisible

public Boolean getMaskVisible(int ROIIndex,
                     int shapeIndex)

Specified by:: getMaskVisible in interface MetadataRetrieve

getMaskHeight

public Double getMaskHeight(int ROIIndex,
                   int shapeIndex)

Specified by:: getMaskHeight in interface MetadataRetrieve

getMaskWidth

public Double getMaskWidth(int ROIIndex,
                  int shapeIndex)

Specified by:: getMaskWidth in interface MetadataRetrieve

getMaskX

public Double getMaskX(int ROIIndex,
              int shapeIndex)

Specified by:: getMaskX in interface MetadataRetrieve

getMaskY

public Double getMaskY(int ROIIndex,
              int shapeIndex)

Specified by:: getMaskY in interface MetadataRetrieve

getMicrobeamManipulationDescription

public String getMicrobeamManipulationDescription(int experimentIndex,
                                         int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationDescription in interface MetadataRetrieve

getMicrobeamManipulationExperimenterRef

public String getMicrobeamManipulationExperimenterRef(int experimentIndex,
                                             int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationExperimenterRef in interface MetadataRetrieve

getMicrobeamManipulationID

public String getMicrobeamManipulationID(int experimentIndex,
                                int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationID in interface MetadataRetrieve

getMicrobeamManipulationROIRef

public String getMicrobeamManipulationROIRef(int experimentIndex,
                                    int microbeamManipulationIndex,
                                    int ROIRefIndex)

Specified by:: getMicrobeamManipulationROIRef in interface MetadataRetrieve

getMicrobeamManipulationType

public MicrobeamManipulationType getMicrobeamManipulationType(int experimentIndex,
                                                     int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationType in interface MetadataRetrieve

getMicroscopeLotNumber
```
public String getMicroscopeLotNumber(int instrumentIndex)
```
Specified by:

getMicroscopeLotNumber in interface MetadataRetrieve

getMicroscopeManufacturer
```
public String getMicroscopeManufacturer(int instrumentIndex)
```
Specified by:

getMicroscopeManufacturer in interface MetadataRetrieve

getMicroscopeModel
```
public String getMicroscopeModel(int instrumentIndex)
```
Specified by:

getMicroscopeModel in interface MetadataRetrieve

getMicroscopeSerialNumber
```
public String getMicroscopeSerialNumber(int instrumentIndex)
```
Specified by:

getMicroscopeSerialNumber in interface MetadataRetrieve

getMicroscopeType
```
public MicroscopeType getMicroscopeType(int instrumentIndex)
```
Specified by:

getMicroscopeType in interface MetadataRetrieve

getObjectiveCalibratedMagnification

public Double getObjectiveCalibratedMagnification(int instrumentIndex,
                                         int objectiveIndex)

Specified by:: getObjectiveCalibratedMagnification in interface MetadataRetrieve

getObjectiveCorrection

public Correction getObjectiveCorrection(int instrumentIndex,
                                int objectiveIndex)

Specified by:: getObjectiveCorrection in interface MetadataRetrieve

getObjectiveID

public String getObjectiveID(int instrumentIndex,
                    int objectiveIndex)

Specified by:: getObjectiveID in interface MetadataRetrieve

getObjectiveImmersion

public Immersion getObjectiveImmersion(int instrumentIndex,
                              int objectiveIndex)

Specified by:: getObjectiveImmersion in interface MetadataRetrieve

getObjectiveIris

public Boolean getObjectiveIris(int instrumentIndex,
                       int objectiveIndex)

Specified by:: getObjectiveIris in interface MetadataRetrieve

getObjectiveLensNA

public Double getObjectiveLensNA(int instrumentIndex,
                        int objectiveIndex)

Specified by:: getObjectiveLensNA in interface MetadataRetrieve

getObjectiveLotNumber

public String getObjectiveLotNumber(int instrumentIndex,
                           int objectiveIndex)

Specified by:: getObjectiveLotNumber in interface MetadataRetrieve

getObjectiveManufacturer

public String getObjectiveManufacturer(int instrumentIndex,
                              int objectiveIndex)

Specified by:: getObjectiveManufacturer in interface MetadataRetrieve

getObjectiveModel

public String getObjectiveModel(int instrumentIndex,
                       int objectiveIndex)

Specified by:: getObjectiveModel in interface MetadataRetrieve

getObjectiveNominalMagnification

public Double getObjectiveNominalMagnification(int instrumentIndex,
                                      int objectiveIndex)

Specified by:: getObjectiveNominalMagnification in interface MetadataRetrieve

getObjectiveSerialNumber

public String getObjectiveSerialNumber(int instrumentIndex,
                              int objectiveIndex)

Specified by:: getObjectiveSerialNumber in interface MetadataRetrieve

getObjectiveWorkingDistance

public Double getObjectiveWorkingDistance(int instrumentIndex,
                                 int objectiveIndex)

Specified by:: getObjectiveWorkingDistance in interface MetadataRetrieve

getObjectiveSettingsCorrectionCollar
```
public Double getObjectiveSettingsCorrectionCollar(int imageIndex)
```
Specified by:

getObjectiveSettingsCorrectionCollar in interface MetadataRetrieve

getObjectiveSettingsID
```
public String getObjectiveSettingsID(int imageIndex)
```
Specified by:

getObjectiveSettingsID in interface MetadataRetrieve

getObjectiveSettingsMedium
```
public Medium getObjectiveSettingsMedium(int imageIndex)
```
Specified by:

getObjectiveSettingsMedium in interface MetadataRetrieve

getObjectiveSettingsRefractiveIndex
```
public Double getObjectiveSettingsRefractiveIndex(int imageIndex)
```
Specified by:

getObjectiveSettingsRefractiveIndex in interface MetadataRetrieve

getPixelsAnnotationRef

public String getPixelsAnnotationRef(int imageIndex,
                            int annotationRefIndex)

Specified by:: getPixelsAnnotationRef in interface MetadataRetrieve

getPixelsBigEndian
```
public Boolean getPixelsBigEndian(int imageIndex)
```
Specified by:

getPixelsBigEndian in interface MetadataRetrieve

getPixelsDimensionOrder
```
public DimensionOrder getPixelsDimensionOrder(int imageIndex)
```
Specified by:

getPixelsDimensionOrder in interface MetadataRetrieve

getPixelsID
```
public String getPixelsID(int imageIndex)
```
Specified by:

getPixelsID in interface MetadataRetrieve

getPixelsInterleaved
```
public Boolean getPixelsInterleaved(int imageIndex)
```
Specified by:

getPixelsInterleaved in interface MetadataRetrieve

getPixelsPhysicalSizeX
```
public PositiveFloat getPixelsPhysicalSizeX(int imageIndex)
```
Specified by:

getPixelsPhysicalSizeX in interface MetadataRetrieve

getPixelsPhysicalSizeY
```
public PositiveFloat getPixelsPhysicalSizeY(int imageIndex)
```
Specified by:

getPixelsPhysicalSizeY in interface MetadataRetrieve

getPixelsPhysicalSizeZ
```
public PositiveFloat getPixelsPhysicalSizeZ(int imageIndex)
```
Specified by:

getPixelsPhysicalSizeZ in interface MetadataRetrieve

getPixelsSignificantBits
```
public PositiveInteger getPixelsSignificantBits(int imageIndex)
```
Specified by:

getPixelsSignificantBits in interface MetadataRetrieve

getPixelsSizeC
```
public PositiveInteger getPixelsSizeC(int imageIndex)
```
Specified by:

getPixelsSizeC in interface MetadataRetrieve

getPixelsSizeT
```
public PositiveInteger getPixelsSizeT(int imageIndex)
```
Specified by:

getPixelsSizeT in interface MetadataRetrieve

getPixelsSizeX
```
public PositiveInteger getPixelsSizeX(int imageIndex)
```
Specified by:

getPixelsSizeX in interface MetadataRetrieve

getPixelsSizeY
```
public PositiveInteger getPixelsSizeY(int imageIndex)
```
Specified by:

getPixelsSizeY in interface MetadataRetrieve

getPixelsSizeZ
```
public PositiveInteger getPixelsSizeZ(int imageIndex)
```
Specified by:

getPixelsSizeZ in interface MetadataRetrieve

getPixelsTimeIncrement
```
public Double getPixelsTimeIncrement(int imageIndex)
```
Specified by:

getPixelsTimeIncrement in interface MetadataRetrieve

getPixelsType
```
public PixelType getPixelsType(int imageIndex)
```
Specified by:

getPixelsType in interface MetadataRetrieve

getPlaneAnnotationRef

public String getPlaneAnnotationRef(int imageIndex,
                           int planeIndex,
                           int annotationRefIndex)

Specified by:: getPlaneAnnotationRef in interface MetadataRetrieve

getPlaneDeltaT

public Double getPlaneDeltaT(int imageIndex,
                    int planeIndex)

Specified by:: getPlaneDeltaT in interface MetadataRetrieve

getPlaneExposureTime

public Double getPlaneExposureTime(int imageIndex,
                          int planeIndex)

Specified by:: getPlaneExposureTime in interface MetadataRetrieve

getPlaneHashSHA1

public String getPlaneHashSHA1(int imageIndex,
                      int planeIndex)

Specified by:: getPlaneHashSHA1 in interface MetadataRetrieve

getPlanePositionX

public Double getPlanePositionX(int imageIndex,
                       int planeIndex)

Specified by:: getPlanePositionX in interface MetadataRetrieve

getPlanePositionY

public Double getPlanePositionY(int imageIndex,
                       int planeIndex)

Specified by:: getPlanePositionY in interface MetadataRetrieve

getPlanePositionZ

public Double getPlanePositionZ(int imageIndex,
                       int planeIndex)

Specified by:: getPlanePositionZ in interface MetadataRetrieve

getPlaneTheC

public NonNegativeInteger getPlaneTheC(int imageIndex,
                              int planeIndex)

Specified by:: getPlaneTheC in interface MetadataRetrieve

getPlaneTheT

public NonNegativeInteger getPlaneTheT(int imageIndex,
                              int planeIndex)

Specified by:: getPlaneTheT in interface MetadataRetrieve

getPlaneTheZ

public NonNegativeInteger getPlaneTheZ(int imageIndex,
                              int planeIndex)

Specified by:: getPlaneTheZ in interface MetadataRetrieve

getPlateAnnotationRef

public String getPlateAnnotationRef(int plateIndex,
                           int annotationRefIndex)

Specified by:: getPlateAnnotationRef in interface MetadataRetrieve

getPlateColumnNamingConvention
```
public NamingConvention getPlateColumnNamingConvention(int plateIndex)
```
Specified by:

getPlateColumnNamingConvention in interface MetadataRetrieve

getPlateColumns
```
public PositiveInteger getPlateColumns(int plateIndex)
```
Specified by:

getPlateColumns in interface MetadataRetrieve

getPlateDescription
```
public String getPlateDescription(int plateIndex)
```
Specified by:

getPlateDescription in interface MetadataRetrieve

getPlateExternalIdentifier
```
public String getPlateExternalIdentifier(int plateIndex)
```
Specified by:

getPlateExternalIdentifier in interface MetadataRetrieve

getPlateFieldIndex
```
public NonNegativeInteger getPlateFieldIndex(int plateIndex)
```
Specified by:

getPlateFieldIndex in interface MetadataRetrieve

getPlateID
```
public String getPlateID(int plateIndex)
```
Specified by:

getPlateID in interface MetadataRetrieve

getPlateName
```
public String getPlateName(int plateIndex)
```
Specified by:

getPlateName in interface MetadataRetrieve

getPlateRowNamingConvention
```
public NamingConvention getPlateRowNamingConvention(int plateIndex)
```
Specified by:

getPlateRowNamingConvention in interface MetadataRetrieve

getPlateRows
```
public PositiveInteger getPlateRows(int plateIndex)
```
Specified by:

getPlateRows in interface MetadataRetrieve

getPlateStatus
```
public String getPlateStatus(int plateIndex)
```
Specified by:

getPlateStatus in interface MetadataRetrieve

getPlateWellOriginX
```
public Double getPlateWellOriginX(int plateIndex)
```
Specified by:

getPlateWellOriginX in interface MetadataRetrieve

getPlateWellOriginY
```
public Double getPlateWellOriginY(int plateIndex)
```
Specified by:

getPlateWellOriginY in interface MetadataRetrieve

getPlateAcquisitionAnnotationRef

public String getPlateAcquisitionAnnotationRef(int plateIndex,
                                      int plateAcquisitionIndex,
                                      int annotationRefIndex)

Specified by:: getPlateAcquisitionAnnotationRef in interface MetadataRetrieve

getPlateAcquisitionDescription

public String getPlateAcquisitionDescription(int plateIndex,
                                    int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionDescription in interface MetadataRetrieve

getPlateAcquisitionEndTime

public Timestamp getPlateAcquisitionEndTime(int plateIndex,
                                   int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionEndTime in interface MetadataRetrieve

getPlateAcquisitionID

public String getPlateAcquisitionID(int plateIndex,
                           int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionID in interface MetadataRetrieve

getPlateAcquisitionMaximumFieldCount

public PositiveInteger getPlateAcquisitionMaximumFieldCount(int plateIndex,
                                                   int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionMaximumFieldCount in interface MetadataRetrieve

getPlateAcquisitionName

public String getPlateAcquisitionName(int plateIndex,
                             int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionName in interface MetadataRetrieve

getPlateAcquisitionStartTime

public Timestamp getPlateAcquisitionStartTime(int plateIndex,
                                     int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionStartTime in interface MetadataRetrieve

getPlateAcquisitionWellSampleRef

public String getPlateAcquisitionWellSampleRef(int plateIndex,
                                      int plateAcquisitionIndex,
                                      int wellSampleRefIndex)

Specified by:: getPlateAcquisitionWellSampleRef in interface MetadataRetrieve

getPointFillColor

public Color getPointFillColor(int ROIIndex,
                      int shapeIndex)

Specified by:: getPointFillColor in interface MetadataRetrieve

getPointFillRule

public FillRule getPointFillRule(int ROIIndex,
                        int shapeIndex)

Specified by:: getPointFillRule in interface MetadataRetrieve

getPointFontFamily

public FontFamily getPointFontFamily(int ROIIndex,
                            int shapeIndex)

Specified by:: getPointFontFamily in interface MetadataRetrieve

getPointFontSize

public NonNegativeInteger getPointFontSize(int ROIIndex,
                                  int shapeIndex)

Specified by:: getPointFontSize in interface MetadataRetrieve

getPointFontStyle

public FontStyle getPointFontStyle(int ROIIndex,
                          int shapeIndex)

Specified by:: getPointFontStyle in interface MetadataRetrieve

getPointID

public String getPointID(int ROIIndex,
                int shapeIndex)

Specified by:: getPointID in interface MetadataRetrieve

getPointLineCap

public LineCap getPointLineCap(int ROIIndex,
                      int shapeIndex)

Specified by:: getPointLineCap in interface MetadataRetrieve

getPointLocked

public Boolean getPointLocked(int ROIIndex,
                     int shapeIndex)

Specified by:: getPointLocked in interface MetadataRetrieve

getPointStrokeColor

public Color getPointStrokeColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getPointStrokeColor in interface MetadataRetrieve

getPointStrokeDashArray

public String getPointStrokeDashArray(int ROIIndex,
                             int shapeIndex)

Specified by:: getPointStrokeDashArray in interface MetadataRetrieve

getPointStrokeWidth

public Double getPointStrokeWidth(int ROIIndex,
                         int shapeIndex)

Specified by:: getPointStrokeWidth in interface MetadataRetrieve

getPointText

public String getPointText(int ROIIndex,
                  int shapeIndex)

Specified by:: getPointText in interface MetadataRetrieve

getPointTheC

public NonNegativeInteger getPointTheC(int ROIIndex,
                              int shapeIndex)

Specified by:: getPointTheC in interface MetadataRetrieve

getPointTheT

public NonNegativeInteger getPointTheT(int ROIIndex,
                              int shapeIndex)

Specified by:: getPointTheT in interface MetadataRetrieve

getPointTheZ

public NonNegativeInteger getPointTheZ(int ROIIndex,
                              int shapeIndex)

Specified by:: getPointTheZ in interface MetadataRetrieve

getPointTransform

public AffineTransform getPointTransform(int ROIIndex,
                                int shapeIndex)

Specified by:: getPointTransform in interface MetadataRetrieve

getPointVisible

public Boolean getPointVisible(int ROIIndex,
                      int shapeIndex)

Specified by:: getPointVisible in interface MetadataRetrieve

getPointX

public Double getPointX(int ROIIndex,
               int shapeIndex)

Specified by:: getPointX in interface MetadataRetrieve

getPointY

public Double getPointY(int ROIIndex,
               int shapeIndex)

Specified by:: getPointY in interface MetadataRetrieve

getPolygonFillColor

public Color getPolygonFillColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolygonFillColor in interface MetadataRetrieve

getPolygonFillRule

public FillRule getPolygonFillRule(int ROIIndex,
                          int shapeIndex)

Specified by:: getPolygonFillRule in interface MetadataRetrieve

getPolygonFontFamily

public FontFamily getPolygonFontFamily(int ROIIndex,
                              int shapeIndex)

Specified by:: getPolygonFontFamily in interface MetadataRetrieve

getPolygonFontSize

public NonNegativeInteger getPolygonFontSize(int ROIIndex,
                                    int shapeIndex)

Specified by:: getPolygonFontSize in interface MetadataRetrieve

getPolygonFontStyle

public FontStyle getPolygonFontStyle(int ROIIndex,
                            int shapeIndex)

Specified by:: getPolygonFontStyle in interface MetadataRetrieve

getPolygonID

public String getPolygonID(int ROIIndex,
                  int shapeIndex)

Specified by:: getPolygonID in interface MetadataRetrieve

getPolygonLineCap

public LineCap getPolygonLineCap(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolygonLineCap in interface MetadataRetrieve

getPolygonLocked

public Boolean getPolygonLocked(int ROIIndex,
                       int shapeIndex)

Specified by:: getPolygonLocked in interface MetadataRetrieve

getPolygonStrokeColor

public Color getPolygonStrokeColor(int ROIIndex,
                          int shapeIndex)

Specified by:: getPolygonStrokeColor in interface MetadataRetrieve

getPolygonStrokeDashArray

public String getPolygonStrokeDashArray(int ROIIndex,
                               int shapeIndex)

Specified by:: getPolygonStrokeDashArray in interface MetadataRetrieve

getPolygonStrokeWidth

public Double getPolygonStrokeWidth(int ROIIndex,
                           int shapeIndex)

Specified by:: getPolygonStrokeWidth in interface MetadataRetrieve

getPolygonText

public String getPolygonText(int ROIIndex,
                    int shapeIndex)

Specified by:: getPolygonText in interface MetadataRetrieve

getPolygonTheC

public NonNegativeInteger getPolygonTheC(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolygonTheC in interface MetadataRetrieve

getPolygonTheT

public NonNegativeInteger getPolygonTheT(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolygonTheT in interface MetadataRetrieve

getPolygonTheZ

public NonNegativeInteger getPolygonTheZ(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolygonTheZ in interface MetadataRetrieve

getPolygonTransform

public AffineTransform getPolygonTransform(int ROIIndex,
                                  int shapeIndex)

Specified by:: getPolygonTransform in interface MetadataRetrieve

getPolygonVisible

public Boolean getPolygonVisible(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolygonVisible in interface MetadataRetrieve

getPolygonPoints

public String getPolygonPoints(int ROIIndex,
                      int shapeIndex)

Specified by:: getPolygonPoints in interface MetadataRetrieve

getPolylineFillColor

public Color getPolylineFillColor(int ROIIndex,
                         int shapeIndex)

Specified by:: getPolylineFillColor in interface MetadataRetrieve

getPolylineFillRule

public FillRule getPolylineFillRule(int ROIIndex,
                           int shapeIndex)

Specified by:: getPolylineFillRule in interface MetadataRetrieve

getPolylineFontFamily

public FontFamily getPolylineFontFamily(int ROIIndex,
                               int shapeIndex)

Specified by:: getPolylineFontFamily in interface MetadataRetrieve

getPolylineFontSize

public NonNegativeInteger getPolylineFontSize(int ROIIndex,
                                     int shapeIndex)

Specified by:: getPolylineFontSize in interface MetadataRetrieve

getPolylineFontStyle

public FontStyle getPolylineFontStyle(int ROIIndex,
                             int shapeIndex)

Specified by:: getPolylineFontStyle in interface MetadataRetrieve

getPolylineID

public String getPolylineID(int ROIIndex,
                   int shapeIndex)

Specified by:: getPolylineID in interface MetadataRetrieve

getPolylineLineCap

public LineCap getPolylineLineCap(int ROIIndex,
                         int shapeIndex)

Specified by:: getPolylineLineCap in interface MetadataRetrieve

getPolylineLocked

public Boolean getPolylineLocked(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolylineLocked in interface MetadataRetrieve

getPolylineStrokeColor

public Color getPolylineStrokeColor(int ROIIndex,
                           int shapeIndex)

Specified by:: getPolylineStrokeColor in interface MetadataRetrieve

getPolylineStrokeDashArray

public String getPolylineStrokeDashArray(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolylineStrokeDashArray in interface MetadataRetrieve

getPolylineStrokeWidth

public Double getPolylineStrokeWidth(int ROIIndex,
                            int shapeIndex)

Specified by:: getPolylineStrokeWidth in interface MetadataRetrieve

getPolylineText

public String getPolylineText(int ROIIndex,
                     int shapeIndex)

Specified by:: getPolylineText in interface MetadataRetrieve

getPolylineTheC

public NonNegativeInteger getPolylineTheC(int ROIIndex,
                                 int shapeIndex)

Specified by:: getPolylineTheC in interface MetadataRetrieve

getPolylineTheT

public NonNegativeInteger getPolylineTheT(int ROIIndex,
                                 int shapeIndex)

Specified by:: getPolylineTheT in interface MetadataRetrieve

getPolylineTheZ

public NonNegativeInteger getPolylineTheZ(int ROIIndex,
                                 int shapeIndex)

Specified by:: getPolylineTheZ in interface MetadataRetrieve

getPolylineTransform

public AffineTransform getPolylineTransform(int ROIIndex,
                                   int shapeIndex)

Specified by:: getPolylineTransform in interface MetadataRetrieve

getPolylineVisible

public Boolean getPolylineVisible(int ROIIndex,
                         int shapeIndex)

Specified by:: getPolylineVisible in interface MetadataRetrieve

getPolylineMarkerEnd

public Marker getPolylineMarkerEnd(int ROIIndex,
                          int shapeIndex)

Specified by:: getPolylineMarkerEnd in interface MetadataRetrieve

getPolylineMarkerStart

public Marker getPolylineMarkerStart(int ROIIndex,
                            int shapeIndex)

Specified by:: getPolylineMarkerStart in interface MetadataRetrieve

getPolylinePoints

public String getPolylinePoints(int ROIIndex,
                       int shapeIndex)

Specified by:: getPolylinePoints in interface MetadataRetrieve

getProjectAnnotationRef

public String getProjectAnnotationRef(int projectIndex,
                             int annotationRefIndex)

Specified by:: getProjectAnnotationRef in interface MetadataRetrieve

getProjectDatasetRef

public String getProjectDatasetRef(int projectIndex,
                          int datasetRefIndex)

Specified by:: getProjectDatasetRef in interface MetadataRetrieve

getProjectDescription
```
public String getProjectDescription(int projectIndex)
```
Specified by:

getProjectDescription in interface MetadataRetrieve

getProjectExperimenterGroupRef
```
public String getProjectExperimenterGroupRef(int projectIndex)
```
Specified by:

getProjectExperimenterGroupRef in interface MetadataRetrieve

getProjectExperimenterRef
```
public String getProjectExperimenterRef(int projectIndex)
```
Specified by:

getProjectExperimenterRef in interface MetadataRetrieve

getProjectID
```
public String getProjectID(int projectIndex)
```
Specified by:

getProjectID in interface MetadataRetrieve

getProjectName
```
public String getProjectName(int projectIndex)
```
Specified by:

getProjectName in interface MetadataRetrieve

getROIAnnotationRef

public String getROIAnnotationRef(int ROIIndex,
                         int annotationRefIndex)

Specified by:: getROIAnnotationRef in interface MetadataRetrieve

getROIDescription
```
public String getROIDescription(int ROIIndex)
```
Specified by:

getROIDescription in interface MetadataRetrieve

getROIID
```
public String getROIID(int ROIIndex)
```
Specified by:

getROIID in interface MetadataRetrieve

getROIName
```
public String getROIName(int ROIIndex)
```
Specified by:

getROIName in interface MetadataRetrieve

getROINamespace
```
public String getROINamespace(int ROIIndex)
```
Specified by:

getROINamespace in interface MetadataRetrieve

getReagentAnnotationRef

public String getReagentAnnotationRef(int screenIndex,
                             int reagentIndex,
                             int annotationRefIndex)

Specified by:: getReagentAnnotationRef in interface MetadataRetrieve

getReagentDescription

public String getReagentDescription(int screenIndex,
                           int reagentIndex)

Specified by:: getReagentDescription in interface MetadataRetrieve

getReagentID

public String getReagentID(int screenIndex,
                  int reagentIndex)

Specified by:: getReagentID in interface MetadataRetrieve

getReagentName

public String getReagentName(int screenIndex,
                    int reagentIndex)

Specified by:: getReagentName in interface MetadataRetrieve

getReagentReagentIdentifier

public String getReagentReagentIdentifier(int screenIndex,
                                 int reagentIndex)

Specified by:: getReagentReagentIdentifier in interface MetadataRetrieve

getRectangleFillColor

public Color getRectangleFillColor(int ROIIndex,
                          int shapeIndex)

Specified by:: getRectangleFillColor in interface MetadataRetrieve

getRectangleFillRule

public FillRule getRectangleFillRule(int ROIIndex,
                            int shapeIndex)

Specified by:: getRectangleFillRule in interface MetadataRetrieve

getRectangleFontFamily

public FontFamily getRectangleFontFamily(int ROIIndex,
                                int shapeIndex)

Specified by:: getRectangleFontFamily in interface MetadataRetrieve

getRectangleFontSize

public NonNegativeInteger getRectangleFontSize(int ROIIndex,
                                      int shapeIndex)

Specified by:: getRectangleFontSize in interface MetadataRetrieve

getRectangleFontStyle

public FontStyle getRectangleFontStyle(int ROIIndex,
                              int shapeIndex)

Specified by:: getRectangleFontStyle in interface MetadataRetrieve

getRectangleID

public String getRectangleID(int ROIIndex,
                    int shapeIndex)

Specified by:: getRectangleID in interface MetadataRetrieve

getRectangleLineCap

public LineCap getRectangleLineCap(int ROIIndex,
                          int shapeIndex)

Specified by:: getRectangleLineCap in interface MetadataRetrieve

getRectangleLocked

public Boolean getRectangleLocked(int ROIIndex,
                         int shapeIndex)

Specified by:: getRectangleLocked in interface MetadataRetrieve

getRectangleStrokeColor

public Color getRectangleStrokeColor(int ROIIndex,
                            int shapeIndex)

Specified by:: getRectangleStrokeColor in interface MetadataRetrieve

getRectangleStrokeDashArray

public String getRectangleStrokeDashArray(int ROIIndex,
                                 int shapeIndex)

Specified by:: getRectangleStrokeDashArray in interface MetadataRetrieve

getRectangleStrokeWidth

public Double getRectangleStrokeWidth(int ROIIndex,
                             int shapeIndex)

Specified by:: getRectangleStrokeWidth in interface MetadataRetrieve

getRectangleText

public String getRectangleText(int ROIIndex,
                      int shapeIndex)

Specified by:: getRectangleText in interface MetadataRetrieve

getRectangleTheC

public NonNegativeInteger getRectangleTheC(int ROIIndex,
                                  int shapeIndex)

Specified by:: getRectangleTheC in interface MetadataRetrieve

getRectangleTheT

public NonNegativeInteger getRectangleTheT(int ROIIndex,
                                  int shapeIndex)

Specified by:: getRectangleTheT in interface MetadataRetrieve

getRectangleTheZ

public NonNegativeInteger getRectangleTheZ(int ROIIndex,
                                  int shapeIndex)

Specified by:: getRectangleTheZ in interface MetadataRetrieve

getRectangleTransform

public AffineTransform getRectangleTransform(int ROIIndex,
                                    int shapeIndex)

Specified by:: getRectangleTransform in interface MetadataRetrieve

getRectangleVisible

public Boolean getRectangleVisible(int ROIIndex,
                          int shapeIndex)

Specified by:: getRectangleVisible in interface MetadataRetrieve

getRectangleHeight

public Double getRectangleHeight(int ROIIndex,
                        int shapeIndex)

Specified by:: getRectangleHeight in interface MetadataRetrieve

getRectangleWidth

public Double getRectangleWidth(int ROIIndex,
                       int shapeIndex)

Specified by:: getRectangleWidth in interface MetadataRetrieve

getRectangleX

public Double getRectangleX(int ROIIndex,
                   int shapeIndex)

Specified by:: getRectangleX in interface MetadataRetrieve

getRectangleY

public Double getRectangleY(int ROIIndex,
                   int shapeIndex)

Specified by:: getRectangleY in interface MetadataRetrieve

getRightsRightsHeld
```
public String getRightsRightsHeld(int rightsHeldIndex)
```
Specified by:

getRightsRightsHeld in interface MetadataRetrieve

getRightsRightsHolder
```
public String getRightsRightsHolder(int rightsHolderIndex)
```
Specified by:

getRightsRightsHolder in interface MetadataRetrieve

getScreenAnnotationRef

public String getScreenAnnotationRef(int screenIndex,
                            int annotationRefIndex)

Specified by:: getScreenAnnotationRef in interface MetadataRetrieve

getScreenDescription
```
public String getScreenDescription(int screenIndex)
```
Specified by:

getScreenDescription in interface MetadataRetrieve

getScreenID
```
public String getScreenID(int screenIndex)
```
Specified by:

getScreenID in interface MetadataRetrieve

getScreenName
```
public String getScreenName(int screenIndex)
```
Specified by:

getScreenName in interface MetadataRetrieve

getScreenPlateRef

public String getScreenPlateRef(int screenIndex,
                       int plateRefIndex)

Specified by:: getScreenPlateRef in interface MetadataRetrieve

getScreenProtocolDescription
```
public String getScreenProtocolDescription(int screenIndex)
```
Specified by:

getScreenProtocolDescription in interface MetadataRetrieve

getScreenProtocolIdentifier
```
public String getScreenProtocolIdentifier(int screenIndex)
```
Specified by:

getScreenProtocolIdentifier in interface MetadataRetrieve

getScreenReagentSetDescription
```
public String getScreenReagentSetDescription(int screenIndex)
```
Specified by:

getScreenReagentSetDescription in interface MetadataRetrieve

getScreenReagentSetIdentifier
```
public String getScreenReagentSetIdentifier(int screenIndex)
```
Specified by:

getScreenReagentSetIdentifier in interface MetadataRetrieve

getScreenType
```
public String getScreenType(int screenIndex)
```
Specified by:

getScreenType in interface MetadataRetrieve

getStageLabelName
```
public String getStageLabelName(int imageIndex)
```
Specified by:

getStageLabelName in interface MetadataRetrieve

getStageLabelX
```
public Double getStageLabelX(int imageIndex)
```
Specified by:

getStageLabelX in interface MetadataRetrieve

getStageLabelY
```
public Double getStageLabelY(int imageIndex)
```
Specified by:

getStageLabelY in interface MetadataRetrieve

getStageLabelZ
```
public Double getStageLabelZ(int imageIndex)
```
Specified by:

getStageLabelZ in interface MetadataRetrieve

getTagAnnotationAnnotationRef

public String getTagAnnotationAnnotationRef(int tagAnnotationIndex,
                                   int annotationRefIndex)

Specified by:: getTagAnnotationAnnotationRef in interface MetadataRetrieve

getTagAnnotationAnnotator
```
public String getTagAnnotationAnnotator(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationAnnotator in interface MetadataRetrieve

getTagAnnotationDescription
```
public String getTagAnnotationDescription(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationDescription in interface MetadataRetrieve

getTagAnnotationID
```
public String getTagAnnotationID(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationID in interface MetadataRetrieve

getTagAnnotationNamespace
```
public String getTagAnnotationNamespace(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationNamespace in interface MetadataRetrieve

getTagAnnotationValue
```
public String getTagAnnotationValue(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationValue in interface MetadataRetrieve

getTermAnnotationAnnotationRef

public String getTermAnnotationAnnotationRef(int termAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getTermAnnotationAnnotationRef in interface MetadataRetrieve

getTermAnnotationAnnotator
```
public String getTermAnnotationAnnotator(int termAnnotationIndex)
```
Specified by:

getTermAnnotationAnnotator in interface MetadataRetrieve

getTermAnnotationDescription
```
public String getTermAnnotationDescription(int termAnnotationIndex)
```
Specified by:

getTermAnnotationDescription in interface MetadataRetrieve

getTermAnnotationID
```
public String getTermAnnotationID(int termAnnotationIndex)
```
Specified by:

getTermAnnotationID in interface MetadataRetrieve

getTermAnnotationNamespace
```
public String getTermAnnotationNamespace(int termAnnotationIndex)
```
Specified by:

getTermAnnotationNamespace in interface MetadataRetrieve

getTermAnnotationValue
```
public String getTermAnnotationValue(int termAnnotationIndex)
```
Specified by:

getTermAnnotationValue in interface MetadataRetrieve

getTiffDataFirstC

public NonNegativeInteger getTiffDataFirstC(int imageIndex,
                                   int tiffDataIndex)

Specified by:: getTiffDataFirstC in interface MetadataRetrieve

getTiffDataFirstT

public NonNegativeInteger getTiffDataFirstT(int imageIndex,
                                   int tiffDataIndex)

Specified by:: getTiffDataFirstT in interface MetadataRetrieve

getTiffDataFirstZ

public NonNegativeInteger getTiffDataFirstZ(int imageIndex,
                                   int tiffDataIndex)

Specified by:: getTiffDataFirstZ in interface MetadataRetrieve

getTiffDataIFD

public NonNegativeInteger getTiffDataIFD(int imageIndex,
                                int tiffDataIndex)

Specified by:: getTiffDataIFD in interface MetadataRetrieve

getTiffDataPlaneCount

public NonNegativeInteger getTiffDataPlaneCount(int imageIndex,
                                       int tiffDataIndex)

Specified by:: getTiffDataPlaneCount in interface MetadataRetrieve

getTimestampAnnotationAnnotationRef

public String getTimestampAnnotationAnnotationRef(int timestampAnnotationIndex,
                                         int annotationRefIndex)

Specified by:: getTimestampAnnotationAnnotationRef in interface MetadataRetrieve

getTimestampAnnotationAnnotator
```
public String getTimestampAnnotationAnnotator(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationAnnotator in interface MetadataRetrieve

getTimestampAnnotationDescription
```
public String getTimestampAnnotationDescription(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationDescription in interface MetadataRetrieve

getTimestampAnnotationID
```
public String getTimestampAnnotationID(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationID in interface MetadataRetrieve

getTimestampAnnotationNamespace
```
public String getTimestampAnnotationNamespace(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationNamespace in interface MetadataRetrieve

getTimestampAnnotationValue
```
public Timestamp getTimestampAnnotationValue(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationValue in interface MetadataRetrieve

getTransmittanceRangeCutIn

public PositiveInteger getTransmittanceRangeCutIn(int instrumentIndex,
                                         int filterIndex)

Specified by:: getTransmittanceRangeCutIn in interface MetadataRetrieve

getTransmittanceRangeCutInTolerance

public NonNegativeInteger getTransmittanceRangeCutInTolerance(int instrumentIndex,
                                                     int filterIndex)

Specified by:: getTransmittanceRangeCutInTolerance in interface MetadataRetrieve

getTransmittanceRangeCutOut

public PositiveInteger getTransmittanceRangeCutOut(int instrumentIndex,
                                          int filterIndex)

Specified by:: getTransmittanceRangeCutOut in interface MetadataRetrieve

getTransmittanceRangeCutOutTolerance

public NonNegativeInteger getTransmittanceRangeCutOutTolerance(int instrumentIndex,
                                                      int filterIndex)

Specified by:: getTransmittanceRangeCutOutTolerance in interface MetadataRetrieve

getTransmittanceRangeTransmittance

public PercentFraction getTransmittanceRangeTransmittance(int instrumentIndex,
                                                 int filterIndex)

Specified by:: getTransmittanceRangeTransmittance in interface MetadataRetrieve

getUUIDFileName

public String getUUIDFileName(int imageIndex,
                     int tiffDataIndex)

Specified by:: getUUIDFileName in interface MetadataRetrieve

getWellAnnotationRef

public String getWellAnnotationRef(int plateIndex,
                          int wellIndex,
                          int annotationRefIndex)

Specified by:: getWellAnnotationRef in interface MetadataRetrieve

getWellColor

public Color getWellColor(int plateIndex,
                 int wellIndex)

Specified by:: getWellColor in interface MetadataRetrieve

getWellColumn

public NonNegativeInteger getWellColumn(int plateIndex,
                               int wellIndex)

Specified by:: getWellColumn in interface MetadataRetrieve

getWellExternalDescription

public String getWellExternalDescription(int plateIndex,
                                int wellIndex)

Specified by:: getWellExternalDescription in interface MetadataRetrieve

getWellExternalIdentifier

public String getWellExternalIdentifier(int plateIndex,
                               int wellIndex)

Specified by:: getWellExternalIdentifier in interface MetadataRetrieve

getWellID

public String getWellID(int plateIndex,
               int wellIndex)

Specified by:: getWellID in interface MetadataRetrieve

getWellReagentRef

public String getWellReagentRef(int plateIndex,
                       int wellIndex)

Specified by:: getWellReagentRef in interface MetadataRetrieve

getWellRow

public NonNegativeInteger getWellRow(int plateIndex,
                            int wellIndex)

Specified by:: getWellRow in interface MetadataRetrieve

getWellType

public String getWellType(int plateIndex,
                 int wellIndex)

Specified by:: getWellType in interface MetadataRetrieve

getWellSampleAnnotationRef

public String getWellSampleAnnotationRef(int plateIndex,
                                int wellIndex,
                                int wellSampleIndex,
                                int annotationRefIndex)

Specified by:: getWellSampleAnnotationRef in interface MetadataRetrieve

getWellSampleID

public String getWellSampleID(int plateIndex,
                     int wellIndex,
                     int wellSampleIndex)

Specified by:: getWellSampleID in interface MetadataRetrieve

getWellSampleImageRef

public String getWellSampleImageRef(int plateIndex,
                           int wellIndex,
                           int wellSampleIndex)

Specified by:: getWellSampleImageRef in interface MetadataRetrieve

getWellSampleIndex

public NonNegativeInteger getWellSampleIndex(int plateIndex,
                                    int wellIndex,
                                    int wellSampleIndex)

Specified by:: getWellSampleIndex in interface MetadataRetrieve

getWellSamplePositionX

public Double getWellSamplePositionX(int plateIndex,
                            int wellIndex,
                            int wellSampleIndex)

Specified by:: getWellSamplePositionX in interface MetadataRetrieve

getWellSamplePositionY

public Double getWellSamplePositionY(int plateIndex,
                            int wellIndex,
                            int wellSampleIndex)

Specified by:: getWellSamplePositionY in interface MetadataRetrieve

getWellSampleTimepoint

public Timestamp getWellSampleTimepoint(int plateIndex,
                               int wellIndex,
                               int wellSampleIndex)

Specified by:: getWellSampleTimepoint in interface MetadataRetrieve

getXMLAnnotationAnnotationRef

public String getXMLAnnotationAnnotationRef(int XMLAnnotationIndex,
                                   int annotationRefIndex)

Specified by:: getXMLAnnotationAnnotationRef in interface MetadataRetrieve

getXMLAnnotationAnnotator
```
public String getXMLAnnotationAnnotator(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationAnnotator in interface MetadataRetrieve

getXMLAnnotationDescription
```
public String getXMLAnnotationDescription(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationDescription in interface MetadataRetrieve

getXMLAnnotationID
```
public String getXMLAnnotationID(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationID in interface MetadataRetrieve

getXMLAnnotationNamespace
```
public String getXMLAnnotationNamespace(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationNamespace in interface MetadataRetrieve

getXMLAnnotationValue
```
public String getXMLAnnotationValue(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationValue in interface MetadataRetrieve

setPixelsBinDataBigEndian

public void setPixelsBinDataBigEndian(Boolean bigEndian,
                             int imageIndex,
                             int binDataIndex)

Specified by:: setPixelsBinDataBigEndian in interface MetadataStore

setMaskBinData

public void setMaskBinData(byte[] binData,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setMaskBinData in interface MetadataStore

setUUID
```
public void setUUID(String uuid)
```
Sets the UUID associated with this collection of metadata.

Specified by:

setUUID in interface MetadataStore

setArcID

public void setArcID(String id,
            int instrumentIndex,
            int lightSourceIndex)

Specified by:: setArcID in interface MetadataStore

setArcLotNumber

public void setArcLotNumber(String lotNumber,
                   int instrumentIndex,
                   int lightSourceIndex)

Specified by:: setArcLotNumber in interface MetadataStore

setArcManufacturer

public void setArcManufacturer(String manufacturer,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:: setArcManufacturer in interface MetadataStore

setArcModel

public void setArcModel(String model,
               int instrumentIndex,
               int lightSourceIndex)

Specified by:: setArcModel in interface MetadataStore

setArcPower

public void setArcPower(Double power,
               int instrumentIndex,
               int lightSourceIndex)

Specified by:: setArcPower in interface MetadataStore

setArcSerialNumber

public void setArcSerialNumber(String serialNumber,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:: setArcSerialNumber in interface MetadataStore

setArcType

public void setArcType(ArcType type,
              int instrumentIndex,
              int lightSourceIndex)

Specified by:: setArcType in interface MetadataStore

setBinaryFileFileName

public void setBinaryFileFileName(String fileName,
                         int fileAnnotationIndex)

Specified by:: setBinaryFileFileName in interface MetadataStore

setBinaryFileMIMEType

public void setBinaryFileMIMEType(String mimeType,
                         int fileAnnotationIndex)

Specified by:: setBinaryFileMIMEType in interface MetadataStore

setBinaryFileSize

public void setBinaryFileSize(NonNegativeLong size,
                     int fileAnnotationIndex)

Specified by:: setBinaryFileSize in interface MetadataStore

setBinaryOnlyMetadataFile
```
public void setBinaryOnlyMetadataFile(String metadataFile)
```
Specified by:

setBinaryOnlyMetadataFile in interface MetadataStore

setBinaryOnlyUUID
```
public void setBinaryOnlyUUID(String uuid)
```
Specified by:

setBinaryOnlyUUID in interface MetadataStore

setBooleanAnnotationAnnotationRef

public void setBooleanAnnotationAnnotationRef(String annotation,
                                     int booleanAnnotationIndex,
                                     int annotationRefIndex)

Specified by:: setBooleanAnnotationAnnotationRef in interface MetadataStore

setBooleanAnnotationAnnotator

public void setBooleanAnnotationAnnotator(String annotator,
                                 int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationAnnotator in interface MetadataStore

setBooleanAnnotationDescription

public void setBooleanAnnotationDescription(String description,
                                   int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationDescription in interface MetadataStore

setBooleanAnnotationID

public void setBooleanAnnotationID(String id,
                          int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationID in interface MetadataStore

setBooleanAnnotationNamespace

public void setBooleanAnnotationNamespace(String namespace,
                                 int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationNamespace in interface MetadataStore

setBooleanAnnotationValue

public void setBooleanAnnotationValue(Boolean value,
                             int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationValue in interface MetadataStore

setChannelAcquisitionMode

public void setChannelAcquisitionMode(AcquisitionMode acquisitionMode,
                             int imageIndex,
                             int channelIndex)

Specified by:: setChannelAcquisitionMode in interface MetadataStore

setChannelAnnotationRef

public void setChannelAnnotationRef(String annotation,
                           int imageIndex,
                           int channelIndex,
                           int annotationRefIndex)

Specified by:: setChannelAnnotationRef in interface MetadataStore

setChannelColor

public void setChannelColor(Color color,
                   int imageIndex,
                   int channelIndex)

Specified by:: setChannelColor in interface MetadataStore

setChannelContrastMethod

public void setChannelContrastMethod(ContrastMethod contrastMethod,
                            int imageIndex,
                            int channelIndex)

Specified by:: setChannelContrastMethod in interface MetadataStore

setChannelEmissionWavelength

public void setChannelEmissionWavelength(PositiveInteger emissionWavelength,
                                int imageIndex,
                                int channelIndex)

Specified by:: setChannelEmissionWavelength in interface MetadataStore

setChannelExcitationWavelength

public void setChannelExcitationWavelength(PositiveInteger excitationWavelength,
                                  int imageIndex,
                                  int channelIndex)

Specified by:: setChannelExcitationWavelength in interface MetadataStore

setChannelFilterSetRef

public void setChannelFilterSetRef(String filterSet,
                          int imageIndex,
                          int channelIndex)

Specified by:: setChannelFilterSetRef in interface MetadataStore

setChannelFluor

public void setChannelFluor(String fluor,
                   int imageIndex,
                   int channelIndex)

Specified by:: setChannelFluor in interface MetadataStore

setChannelID

public void setChannelID(String id,
                int imageIndex,
                int channelIndex)

Specified by:: setChannelID in interface MetadataStore

setChannelIlluminationType

public void setChannelIlluminationType(IlluminationType illuminationType,
                              int imageIndex,
                              int channelIndex)

Specified by:: setChannelIlluminationType in interface MetadataStore

setChannelNDFilter

public void setChannelNDFilter(Double ndFilter,
                      int imageIndex,
                      int channelIndex)

Specified by:: setChannelNDFilter in interface MetadataStore

setChannelName

public void setChannelName(String name,
                  int imageIndex,
                  int channelIndex)

Specified by:: setChannelName in interface MetadataStore

setChannelPinholeSize

public void setChannelPinholeSize(Double pinholeSize,
                         int imageIndex,
                         int channelIndex)

Specified by:: setChannelPinholeSize in interface MetadataStore

setChannelPockelCellSetting

public void setChannelPockelCellSetting(Integer pockelCellSetting,
                               int imageIndex,
                               int channelIndex)

Specified by:: setChannelPockelCellSetting in interface MetadataStore

setChannelSamplesPerPixel

public void setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
                             int imageIndex,
                             int channelIndex)

Specified by:: setChannelSamplesPerPixel in interface MetadataStore

setCommentAnnotationAnnotationRef

public void setCommentAnnotationAnnotationRef(String annotation,
                                     int commentAnnotationIndex,
                                     int annotationRefIndex)

Specified by:: setCommentAnnotationAnnotationRef in interface MetadataStore

setCommentAnnotationAnnotator

public void setCommentAnnotationAnnotator(String annotator,
                                 int commentAnnotationIndex)

Specified by:: setCommentAnnotationAnnotator in interface MetadataStore

setCommentAnnotationDescription

public void setCommentAnnotationDescription(String description,
                                   int commentAnnotationIndex)

Specified by:: setCommentAnnotationDescription in interface MetadataStore

setCommentAnnotationID

public void setCommentAnnotationID(String id,
                          int commentAnnotationIndex)

Specified by:: setCommentAnnotationID in interface MetadataStore

setCommentAnnotationNamespace

public void setCommentAnnotationNamespace(String namespace,
                                 int commentAnnotationIndex)

Specified by:: setCommentAnnotationNamespace in interface MetadataStore

setCommentAnnotationValue

public void setCommentAnnotationValue(String value,
                             int commentAnnotationIndex)

Specified by:: setCommentAnnotationValue in interface MetadataStore

setDatasetAnnotationRef

public void setDatasetAnnotationRef(String annotation,
                           int datasetIndex,
                           int annotationRefIndex)

Specified by:: setDatasetAnnotationRef in interface MetadataStore

setDatasetDescription

public void setDatasetDescription(String description,
                         int datasetIndex)

Specified by:: setDatasetDescription in interface MetadataStore

setDatasetExperimenterGroupRef

public void setDatasetExperimenterGroupRef(String experimenterGroup,
                                  int datasetIndex)

Specified by:: setDatasetExperimenterGroupRef in interface MetadataStore

setDatasetExperimenterRef

public void setDatasetExperimenterRef(String experimenter,
                             int datasetIndex)

Specified by:: setDatasetExperimenterRef in interface MetadataStore

setDatasetID

public void setDatasetID(String id,
                int datasetIndex)

Specified by:: setDatasetID in interface MetadataStore

setDatasetImageRef

public void setDatasetImageRef(String image,
                      int datasetIndex,
                      int imageRefIndex)

Specified by:: setDatasetImageRef in interface MetadataStore

setDatasetName

public void setDatasetName(String name,
                  int datasetIndex)

Specified by:: setDatasetName in interface MetadataStore

setDetectorAmplificationGain

public void setDetectorAmplificationGain(Double amplificationGain,
                                int instrumentIndex,
                                int detectorIndex)

Specified by:: setDetectorAmplificationGain in interface MetadataStore

setDetectorGain

public void setDetectorGain(Double gain,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:: setDetectorGain in interface MetadataStore

setDetectorID

public void setDetectorID(String id,
                 int instrumentIndex,
                 int detectorIndex)

Specified by:: setDetectorID in interface MetadataStore

setDetectorLotNumber

public void setDetectorLotNumber(String lotNumber,
                        int instrumentIndex,
                        int detectorIndex)

Specified by:: setDetectorLotNumber in interface MetadataStore

setDetectorManufacturer

public void setDetectorManufacturer(String manufacturer,
                           int instrumentIndex,
                           int detectorIndex)

Specified by:: setDetectorManufacturer in interface MetadataStore

setDetectorModel

public void setDetectorModel(String model,
                    int instrumentIndex,
                    int detectorIndex)

Specified by:: setDetectorModel in interface MetadataStore

setDetectorOffset

public void setDetectorOffset(Double offset,
                     int instrumentIndex,
                     int detectorIndex)

Specified by:: setDetectorOffset in interface MetadataStore

setDetectorSerialNumber

public void setDetectorSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int detectorIndex)

Specified by:: setDetectorSerialNumber in interface MetadataStore

setDetectorType

public void setDetectorType(DetectorType type,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:: setDetectorType in interface MetadataStore

setDetectorVoltage

public void setDetectorVoltage(Double voltage,
                      int instrumentIndex,
                      int detectorIndex)

Specified by:: setDetectorVoltage in interface MetadataStore

setDetectorZoom

public void setDetectorZoom(Double zoom,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:: setDetectorZoom in interface MetadataStore

setDetectorSettingsBinning

public void setDetectorSettingsBinning(Binning binning,
                              int imageIndex,
                              int channelIndex)

Specified by:: setDetectorSettingsBinning in interface MetadataStore

setDetectorSettingsGain

public void setDetectorSettingsGain(Double gain,
                           int imageIndex,
                           int channelIndex)

Specified by:: setDetectorSettingsGain in interface MetadataStore

setDetectorSettingsID

public void setDetectorSettingsID(String id,
                         int imageIndex,
                         int channelIndex)

Specified by:: setDetectorSettingsID in interface MetadataStore

setDetectorSettingsIntegration

public void setDetectorSettingsIntegration(PositiveInteger integration,
                                  int imageIndex,
                                  int channelIndex)

Specified by:: setDetectorSettingsIntegration in interface MetadataStore

setDetectorSettingsOffset

public void setDetectorSettingsOffset(Double offset,
                             int imageIndex,
                             int channelIndex)

Specified by:: setDetectorSettingsOffset in interface MetadataStore

setDetectorSettingsReadOutRate

public void setDetectorSettingsReadOutRate(Double readOutRate,
                                  int imageIndex,
                                  int channelIndex)

Specified by:: setDetectorSettingsReadOutRate in interface MetadataStore

setDetectorSettingsVoltage

public void setDetectorSettingsVoltage(Double voltage,
                              int imageIndex,
                              int channelIndex)

Specified by:: setDetectorSettingsVoltage in interface MetadataStore

setDetectorSettingsZoom

public void setDetectorSettingsZoom(Double zoom,
                           int imageIndex,
                           int channelIndex)

Specified by:: setDetectorSettingsZoom in interface MetadataStore

setDichroicID

public void setDichroicID(String id,
                 int instrumentIndex,
                 int dichroicIndex)

Specified by:: setDichroicID in interface MetadataStore

setDichroicLotNumber

public void setDichroicLotNumber(String lotNumber,
                        int instrumentIndex,
                        int dichroicIndex)

Specified by:: setDichroicLotNumber in interface MetadataStore

setDichroicManufacturer

public void setDichroicManufacturer(String manufacturer,
                           int instrumentIndex,
                           int dichroicIndex)

Specified by:: setDichroicManufacturer in interface MetadataStore

setDichroicModel

public void setDichroicModel(String model,
                    int instrumentIndex,
                    int dichroicIndex)

Specified by:: setDichroicModel in interface MetadataStore

setDichroicSerialNumber

public void setDichroicSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int dichroicIndex)

Specified by:: setDichroicSerialNumber in interface MetadataStore

setDoubleAnnotationAnnotationRef

public void setDoubleAnnotationAnnotationRef(String annotation,
                                    int doubleAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: setDoubleAnnotationAnnotationRef in interface MetadataStore

setDoubleAnnotationAnnotator

public void setDoubleAnnotationAnnotator(String annotator,
                                int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationAnnotator in interface MetadataStore

setDoubleAnnotationDescription

public void setDoubleAnnotationDescription(String description,
                                  int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationDescription in interface MetadataStore

setDoubleAnnotationID

public void setDoubleAnnotationID(String id,
                         int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationID in interface MetadataStore

setDoubleAnnotationNamespace

public void setDoubleAnnotationNamespace(String namespace,
                                int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationNamespace in interface MetadataStore

setDoubleAnnotationValue

public void setDoubleAnnotationValue(Double value,
                            int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationValue in interface MetadataStore

setEllipseFillColor

public void setEllipseFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setEllipseFillColor in interface MetadataStore

setEllipseFillRule

public void setEllipseFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setEllipseFillRule in interface MetadataStore

setEllipseFontFamily

public void setEllipseFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setEllipseFontFamily in interface MetadataStore

setEllipseFontSize

public void setEllipseFontSize(NonNegativeInteger fontSize,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setEllipseFontSize in interface MetadataStore

setEllipseFontStyle

public void setEllipseFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setEllipseFontStyle in interface MetadataStore

setEllipseID

public void setEllipseID(String id,
                int ROIIndex,
                int shapeIndex)

Specified by:: setEllipseID in interface MetadataStore

setEllipseLineCap

public void setEllipseLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseLineCap in interface MetadataStore

setEllipseLocked

public void setEllipseLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setEllipseLocked in interface MetadataStore

setEllipseStrokeColor

public void setEllipseStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setEllipseStrokeColor in interface MetadataStore

setEllipseStrokeDashArray

public void setEllipseStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)

Specified by:: setEllipseStrokeDashArray in interface MetadataStore

setEllipseStrokeWidth

public void setEllipseStrokeWidth(Double strokeWidth,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setEllipseStrokeWidth in interface MetadataStore

setEllipseText

public void setEllipseText(String text,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseText in interface MetadataStore

setEllipseTheC

public void setEllipseTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseTheC in interface MetadataStore

setEllipseTheT

public void setEllipseTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseTheT in interface MetadataStore

setEllipseTheZ

public void setEllipseTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseTheZ in interface MetadataStore

setEllipseTransform

public void setEllipseTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setEllipseTransform in interface MetadataStore

setEllipseVisible

public void setEllipseVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseVisible in interface MetadataStore

setEllipseRadiusX

public void setEllipseRadiusX(Double radiusX,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseRadiusX in interface MetadataStore

setEllipseRadiusY

public void setEllipseRadiusY(Double radiusY,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseRadiusY in interface MetadataStore

setEllipseX

public void setEllipseX(Double x,
               int ROIIndex,
               int shapeIndex)

Specified by:: setEllipseX in interface MetadataStore

setEllipseY

public void setEllipseY(Double y,
               int ROIIndex,
               int shapeIndex)

Specified by:: setEllipseY in interface MetadataStore

setExperimentDescription

public void setExperimentDescription(String description,
                            int experimentIndex)

Specified by:: setExperimentDescription in interface MetadataStore

setExperimentExperimenterRef

public void setExperimentExperimenterRef(String experimenter,
                                int experimentIndex)

Specified by:: setExperimentExperimenterRef in interface MetadataStore

setExperimentID

public void setExperimentID(String id,
                   int experimentIndex)

Specified by:: setExperimentID in interface MetadataStore

setExperimentType

public void setExperimentType(ExperimentType type,
                     int experimentIndex)

Specified by:: setExperimentType in interface MetadataStore

setExperimenterAnnotationRef

public void setExperimenterAnnotationRef(String annotation,
                                int experimenterIndex,
                                int annotationRefIndex)

Specified by:: setExperimenterAnnotationRef in interface MetadataStore

setExperimenterEmail

public void setExperimenterEmail(String email,
                        int experimenterIndex)

Specified by:: setExperimenterEmail in interface MetadataStore

setExperimenterFirstName

public void setExperimenterFirstName(String firstName,
                            int experimenterIndex)

Specified by:: setExperimenterFirstName in interface MetadataStore

setExperimenterID

public void setExperimenterID(String id,
                     int experimenterIndex)

Specified by:: setExperimenterID in interface MetadataStore

setExperimenterInstitution

public void setExperimenterInstitution(String institution,
                              int experimenterIndex)

Specified by:: setExperimenterInstitution in interface MetadataStore

setExperimenterLastName

public void setExperimenterLastName(String lastName,
                           int experimenterIndex)

Specified by:: setExperimenterLastName in interface MetadataStore

setExperimenterMiddleName

public void setExperimenterMiddleName(String middleName,
                             int experimenterIndex)

Specified by:: setExperimenterMiddleName in interface MetadataStore

setExperimenterUserName

public void setExperimenterUserName(String userName,
                           int experimenterIndex)

Specified by:: setExperimenterUserName in interface MetadataStore

setExperimenterGroupAnnotationRef

public void setExperimenterGroupAnnotationRef(String annotation,
                                     int experimenterGroupIndex,
                                     int annotationRefIndex)

Specified by:: setExperimenterGroupAnnotationRef in interface MetadataStore

setExperimenterGroupDescription

public void setExperimenterGroupDescription(String description,
                                   int experimenterGroupIndex)

Specified by:: setExperimenterGroupDescription in interface MetadataStore

setExperimenterGroupExperimenterRef

public void setExperimenterGroupExperimenterRef(String experimenter,
                                       int experimenterGroupIndex,
                                       int experimenterRefIndex)

Specified by:: setExperimenterGroupExperimenterRef in interface MetadataStore

setExperimenterGroupID

public void setExperimenterGroupID(String id,
                          int experimenterGroupIndex)

Specified by:: setExperimenterGroupID in interface MetadataStore

setExperimenterGroupLeader

public void setExperimenterGroupLeader(String leader,
                              int experimenterGroupIndex,
                              int leaderIndex)

Specified by:: setExperimenterGroupLeader in interface MetadataStore

setExperimenterGroupName

public void setExperimenterGroupName(String name,
                            int experimenterGroupIndex)

Specified by:: setExperimenterGroupName in interface MetadataStore

setFilamentID

public void setFilamentID(String id,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:: setFilamentID in interface MetadataStore

setFilamentLotNumber

public void setFilamentLotNumber(String lotNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:: setFilamentLotNumber in interface MetadataStore

setFilamentManufacturer

public void setFilamentManufacturer(String manufacturer,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:: setFilamentManufacturer in interface MetadataStore

setFilamentModel

public void setFilamentModel(String model,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:: setFilamentModel in interface MetadataStore

setFilamentPower

public void setFilamentPower(Double power,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:: setFilamentPower in interface MetadataStore

setFilamentSerialNumber

public void setFilamentSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:: setFilamentSerialNumber in interface MetadataStore

setFilamentType

public void setFilamentType(FilamentType type,
                   int instrumentIndex,
                   int lightSourceIndex)

Specified by:: setFilamentType in interface MetadataStore

setFileAnnotationAnnotationRef

public void setFileAnnotationAnnotationRef(String annotation,
                                  int fileAnnotationIndex,
                                  int annotationRefIndex)

Specified by:: setFileAnnotationAnnotationRef in interface MetadataStore

setFileAnnotationAnnotator

public void setFileAnnotationAnnotator(String annotator,
                              int fileAnnotationIndex)

Specified by:: setFileAnnotationAnnotator in interface MetadataStore

setFileAnnotationDescription

public void setFileAnnotationDescription(String description,
                                int fileAnnotationIndex)

Specified by:: setFileAnnotationDescription in interface MetadataStore

setFileAnnotationID

public void setFileAnnotationID(String id,
                       int fileAnnotationIndex)

Specified by:: setFileAnnotationID in interface MetadataStore

setFileAnnotationNamespace

public void setFileAnnotationNamespace(String namespace,
                              int fileAnnotationIndex)

Specified by:: setFileAnnotationNamespace in interface MetadataStore

setFilterFilterWheel

public void setFilterFilterWheel(String filterWheel,
                        int instrumentIndex,
                        int filterIndex)

Specified by:: setFilterFilterWheel in interface MetadataStore

setFilterID

public void setFilterID(String id,
               int instrumentIndex,
               int filterIndex)

Specified by:: setFilterID in interface MetadataStore

setFilterLotNumber

public void setFilterLotNumber(String lotNumber,
                      int instrumentIndex,
                      int filterIndex)

Specified by:: setFilterLotNumber in interface MetadataStore

setFilterManufacturer

public void setFilterManufacturer(String manufacturer,
                         int instrumentIndex,
                         int filterIndex)

Specified by:: setFilterManufacturer in interface MetadataStore

setFilterModel

public void setFilterModel(String model,
                  int instrumentIndex,
                  int filterIndex)

Specified by:: setFilterModel in interface MetadataStore

setFilterSerialNumber

public void setFilterSerialNumber(String serialNumber,
                         int instrumentIndex,
                         int filterIndex)

Specified by:: setFilterSerialNumber in interface MetadataStore

setFilterType

public void setFilterType(FilterType type,
                 int instrumentIndex,
                 int filterIndex)

Specified by:: setFilterType in interface MetadataStore

setFilterSetDichroicRef

public void setFilterSetDichroicRef(String dichroic,
                           int instrumentIndex,
                           int filterSetIndex)

Specified by:: setFilterSetDichroicRef in interface MetadataStore

setFilterSetEmissionFilterRef

public void setFilterSetEmissionFilterRef(String emissionFilter,
                                 int instrumentIndex,
                                 int filterSetIndex,
                                 int emissionFilterRefIndex)

Specified by:: setFilterSetEmissionFilterRef in interface MetadataStore

setFilterSetExcitationFilterRef

public void setFilterSetExcitationFilterRef(String excitationFilter,
                                   int instrumentIndex,
                                   int filterSetIndex,
                                   int excitationFilterRefIndex)

Specified by:: setFilterSetExcitationFilterRef in interface MetadataStore

setFilterSetID

public void setFilterSetID(String id,
                  int instrumentIndex,
                  int filterSetIndex)

Specified by:: setFilterSetID in interface MetadataStore

setFilterSetLotNumber

public void setFilterSetLotNumber(String lotNumber,
                         int instrumentIndex,
                         int filterSetIndex)

Specified by:: setFilterSetLotNumber in interface MetadataStore

setFilterSetManufacturer

public void setFilterSetManufacturer(String manufacturer,
                            int instrumentIndex,
                            int filterSetIndex)

Specified by:: setFilterSetManufacturer in interface MetadataStore

setFilterSetModel

public void setFilterSetModel(String model,
                     int instrumentIndex,
                     int filterSetIndex)

Specified by:: setFilterSetModel in interface MetadataStore

setFilterSetSerialNumber

public void setFilterSetSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int filterSetIndex)

Specified by:: setFilterSetSerialNumber in interface MetadataStore

setImageAcquisitionDate

public void setImageAcquisitionDate(Timestamp acquisitionDate,
                           int imageIndex)

Specified by:: setImageAcquisitionDate in interface MetadataStore

setImageAnnotationRef

public void setImageAnnotationRef(String annotation,
                         int imageIndex,
                         int annotationRefIndex)

Specified by:: setImageAnnotationRef in interface MetadataStore

setImageDescription

public void setImageDescription(String description,
                       int imageIndex)

Specified by:: setImageDescription in interface MetadataStore

setImageExperimentRef

public void setImageExperimentRef(String experiment,
                         int imageIndex)

Specified by:: setImageExperimentRef in interface MetadataStore

setImageExperimenterGroupRef

public void setImageExperimenterGroupRef(String experimenterGroup,
                                int imageIndex)

Specified by:: setImageExperimenterGroupRef in interface MetadataStore

setImageExperimenterRef

public void setImageExperimenterRef(String experimenter,
                           int imageIndex)

Specified by:: setImageExperimenterRef in interface MetadataStore

setImageID

public void setImageID(String id,
              int imageIndex)

Specified by:: setImageID in interface MetadataStore

setImageInstrumentRef

public void setImageInstrumentRef(String instrument,
                         int imageIndex)

Specified by:: setImageInstrumentRef in interface MetadataStore

setImageMicrobeamManipulationRef

public void setImageMicrobeamManipulationRef(String microbeamManipulation,
                                    int imageIndex,
                                    int microbeamManipulationRefIndex)

Specified by:: setImageMicrobeamManipulationRef in interface MetadataStore

setImageName

public void setImageName(String name,
                int imageIndex)

Specified by:: setImageName in interface MetadataStore

setImageROIRef

public void setImageROIRef(String roi,
                  int imageIndex,
                  int ROIRefIndex)

Specified by:: setImageROIRef in interface MetadataStore

setImagingEnvironmentAirPressure

public void setImagingEnvironmentAirPressure(Double airPressure,
                                    int imageIndex)

Specified by:: setImagingEnvironmentAirPressure in interface MetadataStore

setImagingEnvironmentCO2Percent

public void setImagingEnvironmentCO2Percent(PercentFraction co2Percent,
                                   int imageIndex)

Specified by:: setImagingEnvironmentCO2Percent in interface MetadataStore

setImagingEnvironmentHumidity

public void setImagingEnvironmentHumidity(PercentFraction humidity,
                                 int imageIndex)

Specified by:: setImagingEnvironmentHumidity in interface MetadataStore

setImagingEnvironmentTemperature

public void setImagingEnvironmentTemperature(Double temperature,
                                    int imageIndex)

Specified by:: setImagingEnvironmentTemperature in interface MetadataStore

setInstrumentID

public void setInstrumentID(String id,
                   int instrumentIndex)

Specified by:: setInstrumentID in interface MetadataStore

setLabelFillColor

public void setLabelFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setLabelFillColor in interface MetadataStore

setLabelFillRule

public void setLabelFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLabelFillRule in interface MetadataStore

setLabelFontFamily

public void setLabelFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setLabelFontFamily in interface MetadataStore

setLabelFontSize

public void setLabelFontSize(NonNegativeInteger fontSize,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLabelFontSize in interface MetadataStore

setLabelFontStyle

public void setLabelFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setLabelFontStyle in interface MetadataStore

setLabelID

public void setLabelID(String id,
              int ROIIndex,
              int shapeIndex)

Specified by:: setLabelID in interface MetadataStore

setLabelLineCap

public void setLabelLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setLabelLineCap in interface MetadataStore

setLabelLocked

public void setLabelLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setLabelLocked in interface MetadataStore

setLabelStrokeColor

public void setLabelStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setLabelStrokeColor in interface MetadataStore

setLabelStrokeDashArray

public void setLabelStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)

Specified by:: setLabelStrokeDashArray in interface MetadataStore

setLabelStrokeWidth

public void setLabelStrokeWidth(Double strokeWidth,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setLabelStrokeWidth in interface MetadataStore

setLabelText

public void setLabelText(String text,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelText in interface MetadataStore

setLabelTheC

public void setLabelTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelTheC in interface MetadataStore

setLabelTheT

public void setLabelTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelTheT in interface MetadataStore

setLabelTheZ

public void setLabelTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelTheZ in interface MetadataStore

setLabelTransform

public void setLabelTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setLabelTransform in interface MetadataStore

setLabelVisible

public void setLabelVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setLabelVisible in interface MetadataStore

setLabelX

public void setLabelX(Double x,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLabelX in interface MetadataStore

setLabelY

public void setLabelY(Double y,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLabelY in interface MetadataStore

setLaserID

public void setLaserID(String id,
              int instrumentIndex,
              int lightSourceIndex)

Specified by:: setLaserID in interface MetadataStore

setLaserLotNumber

public void setLaserLotNumber(String lotNumber,
                     int instrumentIndex,
                     int lightSourceIndex)

Specified by:: setLaserLotNumber in interface MetadataStore

setLaserManufacturer

public void setLaserManufacturer(String manufacturer,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:: setLaserManufacturer in interface MetadataStore

setLaserModel

public void setLaserModel(String model,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:: setLaserModel in interface MetadataStore

setLaserPower

public void setLaserPower(Double power,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:: setLaserPower in interface MetadataStore

setLaserSerialNumber

public void setLaserSerialNumber(String serialNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:: setLaserSerialNumber in interface MetadataStore

setLaserFrequencyMultiplication

public void setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
                                   int instrumentIndex,
                                   int lightSourceIndex)

Specified by:: setLaserFrequencyMultiplication in interface MetadataStore

setLaserLaserMedium

public void setLaserLaserMedium(LaserMedium laserMedium,
                       int instrumentIndex,
                       int lightSourceIndex)

Specified by:: setLaserLaserMedium in interface MetadataStore

Class AggregateMetadata

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

AggregateMetadata

Method Detail

createRoot

getRoot

setRoot

setRoot

getPixelsBinDataCount

getBooleanAnnotationAnnotationCount

getCommentAnnotationAnnotationCount

getDoubleAnnotationAnnotationCount

getFileAnnotationAnnotationCount

getListAnnotationAnnotationCount

getLongAnnotationAnnotationCount

getTagAnnotationAnnotationCount

getTermAnnotationAnnotationCount

getTimestampAnnotationAnnotationCount

getXMLAnnotationAnnotationCount

getLightSourceType

getShapeType

getROIAnnotationRefCount

getPlateAcquisitionAnnotationRefCount

getPlateAnnotationRefCount

getExperimenterGroupAnnotationRefCount

getImageAnnotationRefCount

getScreenAnnotationRefCount

getWellAnnotationRefCount

getDatasetAnnotationRefCount

getProjectAnnotationRefCount

getReagentAnnotationRefCount

getPlaneAnnotationRefCount

getExperimenterAnnotationRefCount

getWellSampleAnnotationRefCount

getPixelsAnnotationRefCount

getChannelAnnotationRefCount

getBooleanAnnotationCount

getChannelCount

getCommentAnnotationCount

getDatasetCount

getDatasetRefCount

getDetectorCount

getDichroicCount

getDoubleAnnotationCount

getLightPathEmissionFilterRefCount

getFilterSetEmissionFilterRefCount

getLightPathExcitationFilterRefCount

getFilterSetExcitationFilterRefCount

getExperimentCount

getExperimenterCount

getExperimenterGroupCount

getExperimenterGroupExperimenterRefCount

getFileAnnotationCount

getFilterCount

getFilterSetCount

getImageCount

getDatasetImageRefCount

getInstrumentCount

getLeaderCount

getLightSourceCount

getMicrobeamManipulationLightSourceSettingsCount

getListAnnotationCount

getLongAnnotationCount

getMicrobeamManipulationCount

getMicrobeamManipulationRefCount

getObjectiveCount

getPlaneCount

getPlateCount

getPlateAcquisitionCount

getPlateRefCount

getProjectCount

getROICount

getImageROIRefCount

getMicrobeamManipulationROIRefCount

getReagentCount

getScreenCount

getShapeCount