Uses of Interface
loci.formats.meta.MetadataStore

Packages that use MetadataStore

Package	Description
loci.formats	Bio-Formats: a library for reading and writing popular microscopy file formats.
loci.formats.gui	Package containing Bio-Formats graphical user interface code.
loci.formats.in	Package containing Bio-Formats file format readers.
loci.formats.meta	Package containing core Bio-Formats metadata interfaces for the OME data model.
loci.formats.ome	Package containing Bio-Formats OME-related logic for OME-XML metadata, and database import, upload and download.
loci.formats.services
loci.plugins.util	Utility classes and methods for the LOCI plugins for ImageJ.

Uses of MetadataStore in loci.formats

Fields in loci.formats declared as MetadataStore

Modifier and Type	Field and Description
protected MetadataStore	FormatReader.metadataStore Current metadata store.

Methods in loci.formats that return MetadataStore

Modifier and Type	Method and Description
MetadataStore	ReaderWrapper.getMetadataStore()
MetadataStore	IFormatReader.getMetadataStore() Retrieves the current metadata store for this reader.
MetadataStore	Memoizer.getMetadataStore()
MetadataStore	ImageReader.getMetadataStore()
MetadataStore	FormatReader.getMetadataStore()
MetadataStore	FileStitcher.getMetadataStore()
protected MetadataStore	FormatReader.makeFilterMetadata() Return a properly configured loci.formats.meta.FilterMetadata.

Methods in loci.formats with parameters of type MetadataStore

Modifier and Type	Method and Description
static MetadataRetrieve	MetadataTools.asRetrieve(MetadataStore meta) Deprecated. This method is not thread-safe; use OMEXMLService.asRetrieve(MetadataStore) instead.
static void	MetadataTools.populateMetadata(MetadataStore store, int series, String imageName, boolean littleEndian, String dimensionOrder, String pixelType, int sizeX, int sizeY, int sizeZ, int sizeC, int sizeT, int samplesPerPixel) Populates the given MetadataStore, for the specified series, using the provided values.
static void	MetadataTools.populateMetadata(MetadataStore store, int series, String imageName, CoreMetadata coreMeta) Populates the given MetadataStore, for the specified series, using the values from the provided CoreMetadata.
static void	MetadataTools.populateMetadata(MetadataStore store, String file, int series, String imageName, boolean littleEndian, String dimensionOrder, String pixelType, int sizeX, int sizeY, int sizeZ, int sizeC, int sizeT, int samplesPerPixel) Populates the given MetadataStore, for the specified series, using the provided values.
static void	MetadataTools.populatePixels(MetadataStore store, IFormatReader r) Populates the 'pixels' element of the given metadata store, using core metadata from the given reader.
static void	MetadataTools.populatePixels(MetadataStore store, IFormatReader r, boolean doPlane) Populates the 'pixels' element of the given metadata store, using core metadata from the given reader.
static void	MetadataTools.populatePixels(MetadataStore store, IFormatReader r, boolean doPlane, boolean doImageName) Populates the 'pixels' element of the given metadata store, using core metadata from the given reader.
static void	MetadataTools.populatePixelsOnly(MetadataStore store, IFormatReader r)
static void	MetadataTools.populatePixelsOnly(MetadataStore store, int series, boolean littleEndian, String dimensionOrder, String pixelType, int sizeX, int sizeY, int sizeZ, int sizeC, int sizeT, int samplesPerPixel)
static void	MetadataTools.setDefaultCreationDate(MetadataStore store, String id, int series) Sets a default creation date.
void	ReaderWrapper.setMetadataStore(MetadataStore store)
void	IFormatReader.setMetadataStore(MetadataStore store) Sets the default metadata store for this reader.
void	Memoizer.setMetadataStore(MetadataStore store)
void	ImageReader.setMetadataStore(MetadataStore store)
void	FormatReader.setMetadataStore(MetadataStore store)
void	DelegateReader.setMetadataStore(MetadataStore store)
void	FileStitcher.setMetadataStore(MetadataStore store)

Uses of MetadataStore in loci.formats.gui

Fields in loci.formats.gui declared as MetadataStore

Modifier and Type	Field and Description
protected MetadataStore	ImageViewer.omeMeta Attached OME metadata store, if available.

Uses of MetadataStore in loci.formats.in

Methods in loci.formats.in that return MetadataStore

Modifier and Type	Method and Description
MetadataStore	OMETiffReader.getMetadataStoreForConversion() Returns a MetadataStore that is populated in such a way as to be usable by an IFormatWriter.
MetadataStore	OMETiffReader.getMetadataStoreForDisplay() Returns a MetadataStore that is populated in such a way as to produce valid OME-XML.

Methods in loci.formats.in with parameters of type MetadataStore

Modifier and Type	Method and Description
protected void	ZeissZVIReader.fillMetadataPass1(MetadataStore store)
protected void	BaseZeissReader.fillMetadataPass1(MetadataStore store) Read and store basic dimensions in model
protected void	ZeissTIFFReader.fillMetadataPass1(MetadataStore store)
protected void	BaseZeissReader.fillMetadataPass2(MetadataStore store) Read and store basic dimensions in model
protected void	ZeissTIFFReader.fillMetadataPass2(MetadataStore store)
protected void	ZeissZVIReader.fillMetadataPass3(MetadataStore store)
protected void	BaseZeissReader.fillMetadataPass3(MetadataStore store) Read and store basic dimensions in model
protected void	BaseZeissReader.fillMetadataPass4(MetadataStore store) Read and store basic dimensions in model
protected void	ZeissZVIReader.fillMetadataPass5(MetadataStore store)
protected void	BaseZeissReader.fillMetadataPass5(MetadataStore store) Read and store basic dimensions in model
protected void	ZeissTIFFReader.fillMetadataPass5(MetadataStore store)
protected void	BaseZeissReader.fillMetadataPass6(MetadataStore store) Read and store basic dimensions in model
protected void	BaseZeissReader.fillMetadataPass7(MetadataStore store) Store basic dimensions in model
void	MIASReader.parseMasks(MetadataStore overlayStore) Parse masks into a separate overlay-specific MetadataStore.
protected void	ZeissLSMReader.parseOverlays(int series, long data, String suffix, MetadataStore store) Parses overlay-related fields.
boolean	MIASReader.populateMaskPixels(int imageIndex, int roiIndex, int shapeIndex, MetadataStore store) Populate the MaskPixels.BinData attribute for the Mask identified by the given Image index, ROI index, and Shape index.
protected void	ZeissLSMReader.populateMetadataStore(loci.formats.in.ZeissLSMReader.SubBlock block, MetadataStore store, int series)
void	ND2Handler.populateROIs(MetadataStore store)
protected void	BaseZeissReader.storeROIs(MetadataStore store) Store basic dimensions in model

Constructors in loci.formats.in with parameters of type MetadataStore

Constructor and Description
FlexReader.FlexHandler(Vector<String> names, Vector<String> factors, MetadataStore store, boolean populateCore, int well)
LeicaHandler(MetadataStore store, MetadataLevel level)

Uses of MetadataStore in loci.formats.meta

Subinterfaces of MetadataStore in loci.formats.meta

Modifier and Type	Interface and Description
interface	IMetadata A proxy capable of bidirectional communication of biological image data to and from a particular storage medium.

Classes in loci.formats.meta that implement MetadataStore

Modifier and Type	Class and Description
class	AggregateMetadata A metadata store which delegates the actual storage to one or more sub metadata stores.
class	DummyMetadata A dummy implementation for MetadataStore and MetadataRetrieve that is used when no other metadata implementations are available.
class	FilterMetadata An implementation of MetadataStore that removes unprintable characters from metadata values before storing them in a delegate MetadataStore.

Methods in loci.formats.meta with parameters of type MetadataStore

Modifier and Type	Method and Description
static void	MetadataConverter.convertMetadata(MetadataRetrieve src, MetadataStore dest) Copies information from a metadata retrieval object (source) into a metadata store (destination).

Constructors in loci.formats.meta with parameters of type MetadataStore

Constructor and Description
FilterMetadata(MetadataStore store, boolean filter)

Uses of MetadataStore in loci.formats.ome

Subinterfaces of MetadataStore in loci.formats.ome

Modifier and Type	Interface and Description
interface	OMEXMLMetadata A utility class for constructing and manipulating OME-XML DOMs.

Classes in loci.formats.ome that implement MetadataStore

Modifier and Type	Class and Description
class	AbstractOMEXMLMetadata A utility class for constructing and manipulating OME-XML DOMs.
class	OMEXMLMetadataImpl A metadata store implementation for constructing and manipulating OME-XML DOMs for the current version of OME-XML.

Uses of MetadataStore in loci.formats.services

Methods in loci.formats.services that return MetadataStore

Modifier and Type	Method and Description
MetadataStore	OMEXMLService.asStore(MetadataRetrieve meta) Gets the given MetadataRetrieve object as a MetadataStore.
MetadataStore	OMEXMLServiceImpl.asStore(MetadataRetrieve meta)

Methods in loci.formats.services with parameters of type MetadataStore

Modifier and Type	Method and Description
MetadataRetrieve	OMEXMLService.asRetrieve(MetadataStore meta) Gets the given MetadataStore object as a MetadataRetrieve.
MetadataRetrieve	OMEXMLServiceImpl.asRetrieve(MetadataStore meta)
void	OMEXMLService.convertMetadata(MetadataRetrieve src, MetadataStore dest) Copies information from a metadata retrieval object (source) into a metadata store (destination).
void	OMEXMLServiceImpl.convertMetadata(MetadataRetrieve src, MetadataStore dest)
void	OMEXMLService.convertMetadata(String xml, MetadataStore dest) Converts information from an OME-XML string (source) into a metadata store (destination).
void	OMEXMLServiceImpl.convertMetadata(String xml, MetadataStore dest)

Uses of MetadataStore in loci.plugins.util

Methods in loci.plugins.util with parameters of type MetadataStore

Modifier and Type	Method and Description
static void	ROIHandler.saveROIs(MetadataStore store) Save ROIs in the ROI manager to the given MetadataStore.