ome.services

Class ThumbnailBean

java.lang.Object

ome.logic.AbstractLevel2Service

ome.services.ThumbnailBean

All Implemented Interfaces:

Serializable, ServiceInterface, StatefulServiceInterface, ThumbnailStore, SelfConfigurableService, org.springframework.context.ApplicationContextAware

@Transactional(readOnly=true)
public class ThumbnailBean
extends AbstractLevel2Service
implements org.springframework.context.ApplicationContextAware, ThumbnailStore, Serializable

Provides methods for directly querying object graphs. The service is entirely read/write transactionally because of the requirements of rendering engine lazy object creation where rendering settings are missing.

Since:

3.0

Version:

3.0 (Internal version: $Rev$ $Date$)

Author:

Chris Allan callan@blackcat.ca

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static float	DEFAULT_COMPRESSION_QUALITY The default compression quality in fractional percent.
static String	DEFAULT_MIME_TYPE The default MIME type.
static int	DEFAULT_X_WIDTH The default X-width for a thumbnail.
static int	DEFAULT_Y_WIDTH The default Y-width for a thumbnail.

Fields inherited from class ome.logic.AbstractLevel2Service

iQuery, iUpdate, metadata, queryFactory, sec

Constructor Summary

Constructors

Constructor and Description
ThumbnailBean(boolean checking, ScriptRepoHelper helper) overridden to allow Spring to set boolean

Method Summary

Modifier and Type	Method and Description
void	activate() Completely restore this service for active use from whatever passivation it has implemented.
void	close() signals the end of the service lifecycle.
void	createThumbnail(Integer sizeX, Integer sizeY) Creates a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache.
void	createThumbnails() Creates thumbnails for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache for every sizeX/sizeY combination already cached.
void	createThumbnailsByLongestSideSet(Integer size, Set<Long> pixelsIds) Creates thumbnails for a number of pixels sets using a given set of rendering settings (RenderingDef) in the on-disk cache.
protected void	errorIfInvalidState()
protected void	errorIfNullPixels()
protected void	errorIfNullPixelsAndRenderingDef()
protected void	errorIfNullRenderingDef()
EventContext	getCurrentEventContext() Returns the current EventContext for this instance.
long	getRenderingDefId() Return the id of the RenderingDef loaded in this instance.
Class<? extends ServiceInterface>	getServiceInterface()
byte[]	getThumbnail(Integer sizeX, Integer sizeY) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
byte[]	getThumbnailByLongestSide(Integer size) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
byte[]	getThumbnailByLongestSideDirect(Integer size) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
Map<Long,byte[]>	getThumbnailByLongestSideSet(Integer size, Set<Long> pixelsIds) Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef).
byte[]	getThumbnailDirect(Integer sizeX, Integer sizeY) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef).
byte[]	getThumbnailForSectionByLongestSideDirect(int theZ, int theT, Integer size) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section.
byte[]	getThumbnailForSectionDirect(int theZ, int theT, Integer sizeX, Integer sizeY) Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section.
Map<Long,byte[]>	getThumbnailSet(Integer sizeX, Integer sizeY, Set<Long> pixelsIds) Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef).
boolean	isDiskSpaceChecking()
boolean	isInProgress() This returns the last available in progress state for a thumbnail.
void	passivate() Perform whatever passivation is possible or throw an exception.
void	resetDefaults() Resets the rendering definition for the active pixels set to its default settings.
void	setApplicationContext(org.springframework.context.ApplicationContext applicationContext)
void	setCompressionService(LocalCompress compressionService) Compression service Bean injector.
void	setDiskSpaceChecking(boolean diskSpaceChecking)
void	setInProgressImageResource(org.springframework.core.io.Resource inProgressImageResource) In-progress image resource Bean injector.
void	setIoService(ThumbnailService ioService) I/O service (ThumbnailService) Bean injector.
void	setIPixels(IPixels iPixels) Pixels service Bean injector.
void	setIRepositoryInfo(IRepositoryInfo iRepositoryInfo) Disk Space Usage service Bean injector
void	setPixelDataService(PixelsService pixelDataService) Pixels data service Bean injector.
boolean	setPixelsId(long id) This method manages the state of the service; it must be invoked before using any other methods.
void	setRenderingDefId(long id) This method manages the state of the service; it should be invoked directly after ThumbnailStore.setPixelsId(long).
void	setScaleService(IScale iScale) Scale service Bean injector.
void	setSettingsService(IRenderingSettings settingsService) Rendering settings service Bean injector.
boolean	thumbnailExists(Integer sizeX, Integer sizeY) Checks if a thumbnail of a particular size exists for a pixels set.

Methods inherited from class ome.logic.AbstractLevel2Service

getBeanHelper, getExtendedMetadata, getQueryFactory, getSecuritySystem, selfConfigure, setExtendedMetadata, setQueryFactory, setQueryService, setSecuritySystem, setUpdateService

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_X_WIDTH

public static final int DEFAULT_X_WIDTH

The default X-width for a thumbnail.

See Also:

Constant Field Values

DEFAULT_Y_WIDTH

public static final int DEFAULT_Y_WIDTH

The default Y-width for a thumbnail.

See Also:

Constant Field Values

DEFAULT_COMPRESSION_QUALITY

public static final float DEFAULT_COMPRESSION_QUALITY

The default compression quality in fractional percent.

See Also:

Constant Field Values

DEFAULT_MIME_TYPE

public static final String DEFAULT_MIME_TYPE

The default MIME type.

See Also:

Constant Field Values

Constructor Detail

ThumbnailBean

public ThumbnailBean(boolean checking,
                     ScriptRepoHelper helper)

overridden to allow Spring to set boolean

Parameters:

checking -

Method Detail

getServiceInterface

public Class<? extends ServiceInterface> getServiceInterface()

Specified by:

getServiceInterface in interface SelfConfigurableService

setApplicationContext

public void setApplicationContext(org.springframework.context.ApplicationContext applicationContext)

Specified by:

setApplicationContext in interface org.springframework.context.ApplicationContextAware

passivate

@Transactional(readOnly=true)
public void passivate()

Description copied from interface: StatefulServiceInterface

Perform whatever passivation is possible or throw an exception. A good passivation method will free up as much memory as possible, most likely by storing it to disk. A call to passivate should be safe even if the service is already passivated.

Specified by:

passivate in interface StatefulServiceInterface

activate

@Transactional(readOnly=true)
public void activate()

Description copied from interface: StatefulServiceInterface

Completely restore this service for active use from whatever passivation it has implemented. A call to activate should be safe even if the service is already activated.

Specified by:

activate in interface StatefulServiceInterface

close

public void close()

Description copied from interface: StatefulServiceInterface

signals the end of the service lifecycle. Resources such as Sessions can be released. All further calls will throw an exception.

Specified by:

close in interface StatefulServiceInterface

getRenderingDefId

public long getRenderingDefId()

Description copied from interface: ThumbnailStore

Return the id of the RenderingDef loaded in this instance.

Specified by:

getRenderingDefId in interface ThumbnailStore

getCurrentEventContext

public EventContext getCurrentEventContext()

Description copied from interface: StatefulServiceInterface

Returns the current EventContext for this instance. This is useful for later identifying changes made by this Event.

Specified by:

getCurrentEventContext in interface StatefulServiceInterface

setPixelsId

@Transactional(readOnly=false)
public boolean setPixelsId(long id)

Description copied from interface: ThumbnailStore

This method manages the state of the service; it must be invoked before using any other methods. As the

ThumbnailStore

relies on the

RenderingEngine

, a valid rendering definition must be available for it to work.

Specified by:

setPixelsId in interface ThumbnailStore

Parameters:

id - an Pixels id.

Returns:

true if a RenderingDef exists for the Pixels set, otherwise false

isInProgress

public boolean isInProgress()

Description copied from interface: ThumbnailStore

This returns the last available in progress state for a thumbnail. Its return value is only expected to be valid after the call to any of the individual thumbnail retrieval methods.

Specified by:

isInProgress in interface ThumbnailStore

Returns:

true if the image is in the process of being imported or a pyramid is being generated for it.

setRenderingDefId

public void setRenderingDefId(long id)

Description copied from interface: ThumbnailStore

This method manages the state of the service; it should be invoked directly after ThumbnailStore.setPixelsId(long). If it is not invoked with a valid rendering definition ID before using the thumbnail accessor methods execution continues as if renderingDefId were set to null.

Specified by:

setRenderingDefId in interface ThumbnailStore

Parameters:

id - an RenderingDef id. null specifies the user's currently active rendering settings to be used.

setInProgressImageResource

public void setInProgressImageResource(org.springframework.core.io.Resource inProgressImageResource)

In-progress image resource Bean injector.

Parameters:

inProgressImageResource - The in-progress image resource we'll be using for in progress images.

setPixelDataService

public void setPixelDataService(PixelsService pixelDataService)

Pixels data service Bean injector.

Parameters:

pixelDataService - a PixelsService.

setIPixels

public void setIPixels(IPixels iPixels)

Pixels service Bean injector.

Parameters:

iPixels - an IPixels.

setScaleService

public void setScaleService(IScale iScale)

Scale service Bean injector.

Parameters:

iScale - an IScale.

setIoService

public void setIoService(ThumbnailService ioService)

I/O service (ThumbnailService) Bean injector.

Parameters:

ioService - a ThumbnailService.

setIRepositoryInfo

public final void setIRepositoryInfo(IRepositoryInfo iRepositoryInfo)

Disk Space Usage service Bean injector

Parameters:

iRepositoryInfo - an IRepositoryInfo

setCompressionService

public void setCompressionService(LocalCompress compressionService)

Compression service Bean injector.

Parameters:

compressionService - an ICompress.

setSettingsService

public void setSettingsService(IRenderingSettings settingsService)

Rendering settings service Bean injector.

Parameters:

settingsService - an IRenderingSettings.

errorIfInvalidState

protected void errorIfInvalidState()

errorIfNullPixelsAndRenderingDef

protected void errorIfNullPixelsAndRenderingDef()

errorIfNullPixels

protected void errorIfNullPixels()

errorIfNullRenderingDef

protected void errorIfNullRenderingDef()

createThumbnail

@Transactional(readOnly=false)
public void createThumbnail(Integer sizeX,
                                                           Integer sizeY)

Description copied from interface: ThumbnailStore

Creates a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache.

Specified by:

createThumbnail in interface ThumbnailStore

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

See Also:

ThumbnailStore.getThumbnail(Integer, Integer), ThumbnailStore.getThumbnailDirect(Integer, Integer)

createThumbnails

@Transactional(readOnly=false)
public void createThumbnails()

Description copied from interface: ThumbnailStore

Creates thumbnails for a pixels set using a given set of rendering settings (RenderingDef) in the on-disk cache for every sizeX/sizeY combination already cached.

Specified by:

createThumbnails in interface ThumbnailStore

See Also:

ThumbnailStore.getThumbnail(Integer, Integer), ThumbnailStore.getThumbnailDirect(Integer, Integer)

createThumbnailsByLongestSideSet

@Transactional(readOnly=false)
public void createThumbnailsByLongestSideSet(Integer size,
                                                                            Set<Long> pixelsIds)

Description copied from interface: ThumbnailStore

Creates thumbnails for a number of pixels sets using a given set of rendering settings (RenderingDef) in the on-disk cache. Unlike the other thumbnail creation methods, this method may be called without first calling ThumbnailStore.setPixelsId(long). This method will not reset or modify rendering settings in any way. If rendering settings for a pixels set are not present, thumbnail creation for that pixels set will not be performed.

Specified by:

createThumbnailsByLongestSideSet in interface ThumbnailStore

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

pixelsIds - the Pixels sets to retrieve thumbnails for.

See Also:

ThumbnailStore.createThumbnail(Integer, Integer), ThumbnailStore.createThumbnails()

getThumbnailSet

@Transactional(readOnly=false)
public Map<Long,byte[]> getThumbnailSet(Integer sizeX,
                                                                       Integer sizeY,
                                                                       Set<Long> pixelsIds)

Description copied from interface: ThumbnailStore

Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef). If the thumbnails exist in the on-disk cache they will be returned directly, otherwise they will be created as in ThumbnailStore.getThumbnailDirect(Integer, Integer), placed in the on-disk cache and returned. Unlike the other thumbnail retrieval methods, this method may be called without first calling ThumbnailStore.setPixelsId(long).

Specified by:

getThumbnailSet in interface ThumbnailStore

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

pixelsIds - the Pixels sets to retrieve thumbnails for.

Returns:

a Map whose keys are pixels ids and values are JPEG thumbnail byte buffers or null if an exception was thrown while attempting to retrieve the thumbnail for that particular Pixels set.

See Also:

ThumbnailStore.getThumbnail(Integer, Integer)

getThumbnailByLongestSideSet

@Transactional(readOnly=false)
public Map<Long,byte[]> getThumbnailByLongestSideSet(Integer size,
                                                                                    Set<Long> pixelsIds)

Description copied from interface: ThumbnailStore

Retrieves a number of thumbnails for pixels sets using given sets of rendering settings (RenderingDef). If the Thumbnails exist in the on-disk cache they will be returned directly, otherwise they will be created as in ThumbnailStore.getThumbnailByLongestSideDirect(java.lang.Integer). The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image. Unlike the other thumbnail retrieval methods, this method may be called without first calling ThumbnailStore.setPixelsId(long).

Specified by:

getThumbnailByLongestSideSet in interface ThumbnailStore

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

pixelsIds - the Pixels sets to retrieve thumbnails for.

Returns:

a Map whose keys are pixels ids and values are JPEG thumbnail byte buffers or null if an exception was thrown while attempting to retrieve the thumbnail for that particular Pixels set.

See Also:

ThumbnailStore.getThumbnailSet(Integer, Integer, Set)

getThumbnail

@Transactional(readOnly=false)
public byte[] getThumbnail(Integer sizeX,
                                                          Integer sizeY)

Description copied from interface: ThumbnailStore

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). If the thumbnail exists in the on-disk cache it will be returned directly, otherwise it will be created as in ThumbnailStore.getThumbnailDirect(Integer, Integer), placed in the on-disk cache and returned.

Specified by:

getThumbnail in interface ThumbnailStore

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

See Also:

ThumbnailStore.getThumbnailDirect(Integer, Integer)

getThumbnailByLongestSide

@Transactional(readOnly=false)
public byte[] getThumbnailByLongestSide(Integer size)

Description copied from interface: ThumbnailStore

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). If the thumbnail exists in the on-disk cache it will bereturned directly, otherwise it will be created as in ThumbnailStore.getThumbnailDirect(Integer, Integer), placed in the on-disk cache and returned. The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image.

Specified by:

getThumbnailByLongestSide in interface ThumbnailStore

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

See Also:

ThumbnailStore.getThumbnail(Integer, Integer)

getThumbnailDirect

public byte[] getThumbnailDirect(Integer sizeX,
                                 Integer sizeY)

Description copied from interface: ThumbnailStore

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). The Thumbnail will always be created directly, ignoring the on-disk cache.

Specified by:

getThumbnailDirect in interface ThumbnailStore

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

See Also:

ThumbnailStore.getThumbnail(Integer, Integer)

getThumbnailForSectionDirect

public byte[] getThumbnailForSectionDirect(int theZ,
                                           int theT,
                                           Integer sizeX,
                                           Integer sizeY)

Description copied from interface: ThumbnailStore

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section. The Thumbnail will always be created directly, ignoring the on-disk cache.

Specified by:

getThumbnailForSectionDirect in interface ThumbnailStore

Parameters:

theZ - the optical section (offset across the Z-axis) to use.

theT - the timepoint (offset across the T-axis) to use.

sizeX - the X-axis width of the thumbnail. null specifies the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

See Also:

ThumbnailStore.getThumbnail(Integer, Integer)

getThumbnailByLongestSideDirect

public byte[] getThumbnailByLongestSideDirect(Integer size)

Description copied from interface: ThumbnailStore

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef). The Thumbnail will always be created directly, ignoring the on-disk cache. The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image.

Specified by:

getThumbnailByLongestSideDirect in interface ThumbnailStore

Parameters:

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

See Also:

ThumbnailStore.getThumbnailDirect(Integer, Integer)

getThumbnailForSectionByLongestSideDirect

public byte[] getThumbnailForSectionByLongestSideDirect(int theZ,
                                                        int theT,
                                                        Integer size)

Description copied from interface: ThumbnailStore

Retrieves a thumbnail for a pixels set using a given set of rendering settings (RenderingDef) for a particular section. The Thumbnail will always be created directly, ignoring the on-disk cache. The longest side of the image will be used to calculate the size for the smaller side in order to keep the aspect ratio of the original image.

Specified by:

getThumbnailForSectionByLongestSideDirect in interface ThumbnailStore

Parameters:

theZ - the optical section (offset across the Z-axis) to use.

theT - the timepoint (offset across the T-axis) to use.

size - the size of the longest side of the thumbnail requested. null specifies the default size of 48.

Returns:

a JPEG thumbnail byte buffer.

See Also:

ThumbnailStore.getThumbnailDirect(Integer, Integer)

thumbnailExists

public boolean thumbnailExists(Integer sizeX,
                               Integer sizeY)

Description copied from interface: ThumbnailStore

Checks if a thumbnail of a particular size exists for a pixels set.

Specified by:

thumbnailExists in interface ThumbnailStore

Parameters:

sizeX - the X-axis width of the thumbnail. null specifies use the default size of 48.

sizeY - the Y-axis width of the thumbnail. null specifies user the default size of 48.

See Also:

ThumbnailStore.getThumbnail(Integer, Integer), ThumbnailStore.getThumbnailDirect(Integer, Integer)

resetDefaults

@Transactional(readOnly=false)
public void resetDefaults()

Description copied from interface: ThumbnailStore

Resets the rendering definition for the active pixels set to its default settings.

Specified by:

resetDefaults in interface ThumbnailStore

isDiskSpaceChecking

public boolean isDiskSpaceChecking()

setDiskSpaceChecking

public void setDiskSpaceChecking(boolean diskSpaceChecking)