Uses of Class
ome.annotations.RolesAllowed

Packages that use RolesAllowed

Package	Description
ome.logic	The central repository of implementations which will be accessible through this server.
ome.services	Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component.
ome.services.delete	Implementations of the ome.api.IDelete service.
ome.services.projection
ome.services.sessions
ome.services.sharing	ome.api.IShare support infrastructure.

Uses of RolesAllowed in ome.logic

Methods in ome.logic with annotations of type RolesAllowed

Modifier and Type	Method and Description
void	AdminImpl.addGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
void	AdminImpl.addGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
Long	QueryImpl.aggByQuery(String agg, String field, String query, ome.parameters.Parameters params)
Map<String,Long>	QueryImpl.aggMapByQuery(String agg, String mapKey, String field, String query, ome.parameters.Parameters params)
<T extends ome.model.IEnum> List<T>	TypesImpl.allEnumerations(Class<T> k)
Map<Boolean,List<Long>>	RenderingSettingsImpl.applySettingsToDataset(long from, long to) Implemented as specified by the IRenderingSettings I/F.
boolean	RenderingSettingsImpl.applySettingsToImage(long from, long to) Implemented as specified by the IRenderingSettings I/F
Map<Boolean,List<Long>>	RenderingSettingsImpl.applySettingsToImages(long from, List<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F
boolean	RenderingSettingsImpl.applySettingsToPixels(long from, long to) Implemented as specified by the IRenderingSettings I/F
Map<Boolean,List<Long>>	RenderingSettingsImpl.applySettingsToProject(long from, long to) Implemented as specified by the IRenderingSettings I/F.
<T extends ome.model.IObject> Map<Boolean,List<Long>>	RenderingSettingsImpl.applySettingsToSet(long from, Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
boolean	AdminImpl.canAnnotate(ome.model.IObject obj)
boolean	AdminImpl.canUpdate(ome.model.IObject obj)
void	AdminImpl.changeGroup(ome.model.IObject iObject, String groupName)
void	AdminImpl.changeOwner(ome.model.IObject iObject, String omeName)
void	AdminImpl.changePassword(String newPassword)
void	AdminImpl.changePasswordWithOldPassword(String oldPassword, String newPassword)
void	AdminImpl.changePermissions(ome.model.IObject iObject, ome.model.internal.Permissions perms) the implementation of this method is somewhat tricky in that Permissions changes must be allowed even when other updates are not.
void	AdminImpl.changeUserPassword(String user, String newPassword)
boolean	QueryImpl.checkProperty(String type, String property)
boolean	QueryImpl.checkType(String type)
void	QueryImpl.clear()
ome.model.meta.Experimenter[]	AdminImpl.containedExperimenters(long groupId)
ome.model.meta.ExperimenterGroup[]	AdminImpl.containedGroups(long experimenterId)
boolean	QueryImpl.contains(Object obj)
Long	PixelsImpl.copyAndResizeImage(long imageId, Integer sizeX, Integer sizeY, Integer sizeZ, Integer sizeT, List<Integer> channelList, String name, boolean copyStats)
Long	PixelsImpl.copyAndResizePixels(long pixelsId, Integer sizeX, Integer sizeY, Integer sizeZ, Integer sizeT, List<Integer> channelList, String methodology, boolean copyStats)
Long	MetadataImpl.countAnnotationsUsedNotOwned(Class annotationType, long userID) Implemented as specified by the IMetadata I/F
Long	MetadataImpl.countSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options) Implemented as specified by the IMetadata I/F
ome.model.IObject	PojosImpl.createDataObject(ome.model.IObject arg0, ome.parameters.Parameters arg1) Implemented as specified by the IContainer I/F
ome.model.IObject[]	PojosImpl.createDataObjects(ome.model.IObject[] arg0, ome.parameters.Parameters arg1) Implemented as specified by the IContainer I/F
<T extends ome.model.IEnum> T	TypesImpl.createEnumeration(T newEnum)
long	AdminImpl.createExperimenter(ome.model.meta.Experimenter experimenter, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
long	AdminImpl.createExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password, ome.model.meta.ExperimenterGroup defaultGroup, ome.model.meta.ExperimenterGroup... otherGroups)
long	AdminImpl.createGroup(ome.model.meta.ExperimenterGroup group)
Long	PixelsImpl.createImage(int sizeX, int sizeY, int sizeZ, int sizeT, List<Integer> channelList, ome.model.enums.PixelsType pixelsType, String name, String description)
long	AdminImpl.createSystemUser(ome.model.meta.Experimenter newSystemUser)
long	AdminImpl.createUser(ome.model.meta.Experimenter newUser, String defaultGroup)
ome.model.meta.Experimenter	LdapImpl.createUser(String username) Creates an Experimenter based on the supplied LDAP username.
boolean	LdapImpl.createUserFromLdap(String username, String password) Deprecated.
void	PojosImpl.deleteDataObject(ome.model.IObject row, ome.parameters.Parameters arg1) Implemented as specified by the IContainer I/F
void	PojosImpl.deleteDataObjects(ome.model.IObject[] rows, ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
<T extends ome.model.IEnum> void	TypesImpl.deleteEnumeration(T oEnum)
void	AdminImpl.deleteExperimenter(ome.model.meta.Experimenter user)
void	AdminImpl.deleteGroup(ome.model.meta.ExperimenterGroup group)
void	UpdateImpl.deleteObject(ome.model.IObject row)
List<ome.model.meta.Experimenter>	LdapImpl.discover()
List<ome.model.meta.ExperimenterGroup>	LdapImpl.discoverGroups()
void	QueryImpl.evict(Object obj)
<T> T	QueryImpl.execute(org.springframework.orm.hibernate3.HibernateCallback callback)
<T> T	QueryImpl.execute(Query<T> query)
ome.model.IObject	QueryImpl.find(Class klass, long id)
<T extends ome.model.IObject> List<T>	QueryImpl.findAll(Class<T> klass, ome.parameters.Filter filter)
<T extends ome.model.IObject> List<T>	QueryImpl.findAllByExample(T example, ome.parameters.Filter filter)
<T extends ome.model.IObject> List<T>	QueryImpl.findAllByFullText(Class<T> type, String query, ome.parameters.Parameters params)
<T extends ome.model.IObject> List<T>	QueryImpl.findAllByQuery(String queryName, ome.parameters.Parameters params)
<T extends ome.model.IObject> List<T>	QueryImpl.findAllByString(Class<T> klass, String fieldName, String value, boolean caseSensitive, ome.parameters.Filter filter)
<T extends ome.model.IObject> T	QueryImpl.findByExample(T example)
<T extends ome.model.IObject> T	QueryImpl.findByQuery(String queryName, ome.parameters.Parameters params)
<T extends ome.model.IObject> T	QueryImpl.findByString(Class<T> klass, String fieldName, String value)
Set	PojosImpl.findContainerHierarchies(Class rootNodeType, Set imageIds, ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
String	LdapImpl.findDN(String username)
ome.model.meta.Experimenter	LdapImpl.findExperimenter(String username)
ome.model.meta.ExperimenterGroup	LdapImpl.findGroup(String groupname)
String	LdapImpl.findGroupDN(String groupname)
void	UpdateImpl.flush()
ome.model.IObject	QueryImpl.get(Class klass, long id)
<T extends ome.model.IObject> List<T>	PixelsImpl.getAllEnumerations(Class<T> klass)
List<Class<ome.model.IAnnotated>>	TypesImpl.getAnnotationTypes()
int	PixelsImpl.getBitDepth(ome.model.enums.PixelsType pixelsType)
Map	PojosImpl.getCollectionCount(String type, String property, Set ids, ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
Map<String,String>	ConfigImpl.getConfigDefaults()
<T extends ome.model.IObject> List<Class<T>>	TypesImpl.getContainerTypes()
ome.model.meta.ExperimenterGroup	AdminImpl.getDefaultGroup(long experimenterId)
<T extends ome.model.IEnum> T	TypesImpl.getEnumeration(Class<T> k, String string)
<T extends ome.model.IObject> T	PixelsImpl.getEnumeration(Class<T> klass, String value)
<T extends ome.model.IEnum> Map<Class<T>,List<T>>	TypesImpl.getEnumerationsWithEntries()
<T extends ome.model.IEnum> List<Class<T>>	TypesImpl.getEnumerationTypes()
ome.model.meta.Experimenter	AdminImpl.getExperimenter(long id)
long	RepositoryInfoImpl.getFreeSpaceInKilobytes()
ome.model.meta.ExperimenterGroup	AdminImpl.getGroup(long id)
Set	PojosImpl.getImages(Class rootNodeType, Set rootNodeIds, ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
Set	PojosImpl.getImagesByOptions(ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
Map<Long,Map<Boolean,List<Long>>>	PojosImpl.getImagesBySplitFilesets(Map<Class<? extends ome.model.IObject>,List<Long>> included, ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
<T extends ome.model.IObject> List<Class<T>>	TypesImpl.getImportTypes()
List<Long>	AdminImpl.getLeaderOfGroupIds(ome.model.meta.Experimenter e)
List<Long>	AdminImpl.getMemberOfGroupIds(ome.model.meta.Experimenter e)
<T extends ome.model.IEnum> List<T>	TypesImpl.getOriginalEnumerations()
<T extends ome.model.IObject> List<Class<T>>	TypesImpl.getPojoTypes()
ome.model.display.RenderingDef	RenderingSettingsImpl.getRenderingSettings(long pixelsId) Implemented as specified by the IRenderingSettings I/F
<T extends ome.model.IObject> List<Class<T>>	TypesImpl.getResultTypes()
boolean	LdapImpl.getSetting()
Map	MetadataImpl.getTaggedObjectsCount(Set<Long> tagIds, ome.parameters.Parameters options) Implemented as specified by the IMetadata I/F
double	RepositoryInfoImpl.getUsageFraction() Deprecated.
long	RepositoryInfoImpl.getUsedSpaceInKilobytes() Deprecated.
Set	PojosImpl.getUserImages(ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
List<String>	AdminImpl.getUserRoles(ome.model.meta.Experimenter e)
ome.model.meta.ExperimenterGroup	AdminImpl.groupProxy(Long id)
ome.model.meta.ExperimenterGroup	AdminImpl.groupProxy(String groupName)
void	UpdateImpl.indexObject(ome.model.IObject row)
void	QueryImpl.initialize(Object obj)
ome.model.ILink[]	PojosImpl.link(ome.model.ILink[] arg0, ome.parameters.Parameters arg1) Implemented as specified by the IContainer I/F
<A extends ome.model.annotations.Annotation> Set<A>	MetadataImpl.loadAnnotation(Set<Long> annotationIds) Implemented as specified by the IMetadata I/F
<T extends ome.model.IObject,A extends ome.model.annotations.Annotation> Map<Long,Set<A>>	MetadataImpl.loadAnnotations(Class<T> rootNodeType, Set<Long> rootNodeIds, Set<String> annotationTypes, Set<Long> annotatorIds, ome.parameters.Parameters options) Implemented as specified by the IMetadata I/F
Set<ome.model.IObject>	MetadataImpl.loadAnnotationsUsedNotOwned(Class annotationType, long userID) Implemented as specified by the IMetadata I/F
Set	MetadataImpl.loadChannelAcquisitionData(Set<Long> ids) Implemented as specified by the IMetadata I/F
Set	PojosImpl.loadContainerHierarchy(Class rootNodeType, Set rootNodeIds, ome.parameters.Parameters options) Implemented as specified by the IContainer I/F
ome.model.acquisition.Instrument	MetadataImpl.loadInstrument(long id) Implemented as specified by the IMetadata I/F
Map<Long,Set<ome.model.IObject>>	MetadataImpl.loadLogFiles(Class<? extends ome.model.IObject> rootNodeType, Set<Long> ids)
ome.model.display.RenderingDef	PixelsImpl.loadRndSettings(long renderingDefId) Implemented as specified by the IPixels I/F.
<A extends ome.model.annotations.Annotation> Set<A>	MetadataImpl.loadSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, ome.parameters.Parameters options) Implemented as specified by the IMetadata I/F
<A extends ome.model.annotations.Annotation> Map<Long,Set<A>>	MetadataImpl.loadSpecifiedAnnotationsLinkedTo(Class type, Set<String> include, Set<String> exclude, Class rootNodeType, Set<Long> rootNodeIds, ome.parameters.Parameters options) Implemented as specified by the IMetadata I/F
Map<Long,Set<ome.model.IObject>>	MetadataImpl.loadTagContent(Set<Long> tagIds, ome.parameters.Parameters options) Implemented as specified by the IMetadata I/F
Set<ome.model.IObject>	MetadataImpl.loadTagSets(ome.parameters.Parameters options) Implemented as specified by the IMetadata I/F
ome.model.meta.Experimenter	AdminImpl.lookupExperimenter(String omeName)
List<ome.model.meta.Experimenter>	AdminImpl.lookupExperimenters()
ome.model.meta.ExperimenterGroup	AdminImpl.lookupGroup(String groupName)
List<ome.model.meta.ExperimenterGroup>	AdminImpl.lookupGroups()
String	AdminImpl.lookupLdapAuthExperimenter(long id)
List<Map<String,Object>>	AdminImpl.lookupLdapAuthExperimenters()
void	AdminImpl.moveToCommonSpace(ome.model.IObject... iObjects)
<T extends ome.model.IObject> ome.model.internal.Permissions	TypesImpl.permissions(Class<T> k)
List<Object[]>	QueryImpl.projection(String query, ome.parameters.Parameters p)
void	AdminImpl.removeGroupOwners(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter... owner)
void	AdminImpl.removeGroups(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup... groups)
void	RepositoryInfoImpl.removeUnusedFiles()
void	RenderingSettingsImpl.resetDefaults(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels) Implemented as specified by the IRenderingSettings I/F
<T extends ome.model.IObject> Set<Long>	RenderingSettingsImpl.resetDefaultsByOwnerInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
void	RenderingSettingsImpl.resetDefaultsForPixels(long to) Implemented as specified by the IRenderingSettings I/F.
Set<Long>	RenderingSettingsImpl.resetDefaultsInDataset(long to) Implemented as specified by the IRenderingSettings I/F.
void	RenderingSettingsImpl.resetDefaultsInImage(long to) Implemented as specified by the IRenderingSettings I/F.
<T extends ome.model.IObject> Set<Long>	RenderingSettingsImpl.resetDefaultsInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
ome.model.display.RenderingDef	RenderingSettingsImpl.resetDefaultsNoSave(ome.model.display.RenderingDef def, ome.model.core.Pixels pixels) Implemented as specified by the IRenderingSettings I/F
<T extends ome.model.IEnum> void	TypesImpl.resetEnumerations(Class<T> klass)
<T extends ome.model.IObject> Set<Long>	RenderingSettingsImpl.resetMinMaxInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
List<ome.model.IObject>	PixelsImpl.retrieveAllRndSettings(long pixId, long userId) Implemented as specified by the IPixels I/F.
Collection	PojosImpl.retrieveCollection(ome.model.IObject arg0, String arg1, ome.parameters.Parameters arg2) Implemented as specified by the IContainer I/F
ome.model.core.Pixels	PixelsImpl.retrievePixDescription(long pixId)
ome.model.display.RenderingDef	PixelsImpl.retrieveRndSettings(long pixId) Implemented as specified by the IPixels I/F.
ome.model.display.RenderingDef	PixelsImpl.retrieveRndSettingsFor(long pixId, long userId) Implemented as specified by the IPixels I/F.
void	RepositoryInfoImpl.sanityCheckRepository()
ome.model.IObject[]	UpdateImpl.saveAndReturnArray(ome.model.IObject[] graph)
List<Long>	UpdateImpl.saveAndReturnIds(ome.model.IObject[] graph)
ome.model.IObject	UpdateImpl.saveAndReturnObject(ome.model.IObject graph)
void	UpdateImpl.saveArray(ome.model.IObject[] graph)
void	UpdateImpl.saveCollection(Collection graph)
void	UpdateImpl.saveObject(ome.model.IObject graph)
void	PixelsImpl.saveRndSettings(ome.model.display.RenderingDef rndSettings)
List<ome.model.meta.Experimenter>	LdapImpl.searchAll()
List<ome.model.meta.Experimenter>	LdapImpl.searchByAttribute(String dns, String attr, String value)
List<ome.model.meta.Experimenter>	LdapImpl.searchByAttributes(String dn, String[] attributes, String[] values)
ome.model.meta.Experimenter	LdapImpl.searchByDN(String dns)
List<String>	LdapImpl.searchDnInGroups(String attr, String value)
void	PixelsImpl.setChannelGlobalMinMax(long pixelsId, int channelIndex, double min, double max)
void	ConfigImpl.setConfigValue(String key, String value) see IConfig.setConfigValue(String, String)
boolean	ConfigImpl.setConfigValueIfEquals(String key, String value, String test) see IConfig.setConfigValueIfEquals(String, String, String)
void	AdminImpl.setDefaultGroup(ome.model.meta.Experimenter user, ome.model.meta.ExperimenterGroup group)
void	LdapImpl.setDN(Long experimenterID, String dn) Deprecated.
void	AdminImpl.setGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
void	RenderingSettingsImpl.setOriginalSettingsForPixels(long to) Implemented as specified by the IRenderingSettings I/F.
Set<Long>	RenderingSettingsImpl.setOriginalSettingsInDataset(long to) Implemented as specified by the IRenderingSettings I/F.
void	RenderingSettingsImpl.setOriginalSettingsInImage(long to) Implemented as specified by the IRenderingSettings I/F.
<T extends ome.model.IObject> Set<Long>	RenderingSettingsImpl.setOriginalSettingsInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
void	AdminImpl.synchronizeLoginCache()
void	PojosImpl.unlink(ome.model.ILink[] arg0, ome.parameters.Parameters arg1) Implemented as specified by the IContainer I/F
void	AdminImpl.unsetGroupOwner(ome.model.meta.ExperimenterGroup group, ome.model.meta.Experimenter owner)
ome.model.IObject	PojosImpl.updateDataObject(ome.model.IObject arg0, ome.parameters.Parameters arg1) Implemented as specified by the IContainer I/F
ome.model.IObject[]	PojosImpl.updateDataObjects(ome.model.IObject[] arg0, ome.parameters.Parameters arg1) Implemented as specified by the IContainer I/F
<T extends ome.model.IEnum> T	TypesImpl.updateEnumeration(T oEnum)
<T extends ome.model.IEnum> void	TypesImpl.updateEnumerations(List<T> listEnum)
void	AdminImpl.updateExperimenter(ome.model.meta.Experimenter experimenter)
void	AdminImpl.updateExperimenterWithPassword(ome.model.meta.Experimenter experimenter, String password)
void	AdminImpl.updateGroup(ome.model.meta.ExperimenterGroup group)
void	AdminImpl.updateSelf(ome.model.meta.Experimenter e)
long	AdminImpl.uploadMyUserPhoto(String filename, String mimetype, byte[] data)
ome.model.meta.Experimenter	AdminImpl.userProxy(Long id)
ome.model.meta.Experimenter	AdminImpl.userProxy(String omeName)

Uses of RolesAllowed in ome.services

Methods in ome.services with annotations of type RolesAllowed

Modifier and Type	Method and Description
void	JobBean.activate() Does almost nothing.
void	RawFileBean.activate()
void	RawPixelsBean.activate()
void	RenderingBean.activate()
void	SearchBean.activate()
void	ThumbnailBean.activate()
int	SearchBean.activeQueries()
void	RenderingBean.addCodomainMap(CodomainMapContext mapCtx) Implemented as specified by the RenderingEngine interface.
void	SearchBean.addOrderByAsc(String path)
void	SearchBean.addOrderByDesc(String path)
void	SearchBean.allTypes()
void	SearchBean.and()
ome.model.jobs.JobStatus	JobBean.attach(long id)
void	SearchBean.byAnnotatedWith(ome.model.annotations.Annotation... examples)
void	SearchBean.byFullText(String query)
void	SearchBean.byGroupForTags(String group)
void	SearchBean.byHqlQuery(String query, ome.parameters.Parameters p)
void	SearchBean.byLuceneQueryBuilder(String fields, String from, String to, String dateType, String query)
void	SearchBean.bySimilarTerms(String... terms)
void	SearchBean.bySomeMustNone(String[] some, String[] must, String[] none)
void	SearchBean.byTagForGroups(String tag)
void	SearchBean.byUUID(String[] uuids)
byte[]	RawPixelsBean.calculateMessageDigest()
void	JobBean.cancelJob()
void	SearchBean.clearQueries()
void	JobBean.close()
void	RawFileBean.close()
void	RawPixelsBean.close()
void	RenderingBean.close()
void	SearchBean.close()
void	ThumbnailBean.close()
void	ThumbnailBean.createThumbnail(Integer sizeX, Integer sizeY)
void	ThumbnailBean.createThumbnails()
void	ThumbnailBean.createThumbnailsByLongestSideSet(Integer size, Set<Long> pixelsIds)
Map<String,ome.model.annotations.Annotation>	SearchBean.currentMetadata()
List<Map<String,ome.model.annotations.Annotation>>	SearchBean.currentMetadataList()
boolean	RawFileBean.exists()
<T extends ome.model.IObject> void	SearchBean.fetchAlso(Map<T,String> fetches)
void	SearchBean.fetchAlso(String... fetches)
void	SearchBean.fetchAnnotations(Class... classes)
List	RenderingBean.getAvailableFamilies() Implemented as specified by the RenderingEngine interface.
List	RenderingBean.getAvailableModels() Implemented as specified by the RenderingEngine interface.
int	SearchBean.getBatchSize()
int	RawPixelsBean.getByteWidth()
double	RenderingBean.getChannelCurveCoefficient(int w) Implemented as specified by the RenderingEngine interface.
ome.model.enums.Family	RenderingBean.getChannelFamily(int w) Implemented as specified by the RenderingEngine interface.
String	RenderingBean.getChannelLookupTable(int w)
boolean	RenderingBean.getChannelNoiseReduction(int w) Implemented as specified by the RenderingEngine interface.
double[]	RenderingBean.getChannelStats(int w) Implemented as specified by the RenderingEngine interface.
double	RenderingBean.getChannelWindowEnd(int w) Implemented as specified by the RenderingEngine interface.
double	RenderingBean.getChannelWindowStart(int w) Implemented as specified by the RenderingEngine interface.
byte[]	RawPixelsBean.getCol(int arg0, int arg1, int arg2, int arg3)
float	RenderingBean.getCompressionLevel() Implemented as specified by the RenderingEngine interface.
EventContext	AbstractStatefulBean.getCurrentEventContext()
EventContext	RenderingBean.getCurrentEventContext() Implemented as specified by the RenderingEngine interface.
int	RenderingBean.getDefaultT() Implemented as specified by the RenderingEngine interface.
int	RenderingBean.getDefaultZ() Implemented as specified by the RenderingEngine interface.
Long	RawFileBean.getFileId()
byte[]	RawPixelsBean.getHypercube(List<Integer> offset, List<Integer> size, List<Integer> step)
ome.model.jobs.Job	JobBean.getJob()
ome.model.enums.RenderingModel	RenderingBean.getModel() Implemented as specified by the RenderingEngine interface.
ome.model.core.Pixels	RenderingBean.getPixels() Implemented as specified by the RenderingEngine interface.
long	RawPixelsBean.getPixelsId()
String	RawPixelsBean.getPixelsPath()
double	RenderingBean.getPixelsTypeLowerBound(int w) Implemented as specified by the RenderingEngine interface.
double	RenderingBean.getPixelsTypeUpperBound(int w) Implemented as specified by the RenderingEngine interface.
byte[]	RawPixelsBean.getPlane(int arg0, int arg1, int arg2)
long	RawPixelsBean.getPlaneOffset(int arg0, int arg1, int arg2)
byte[]	RawPixelsBean.getPlaneRegion(int z, int c, int t, int count, int offset)
long	RawPixelsBean.getPlaneSize()
ome.model.display.QuantumDef	RenderingBean.getQuantumDef() Implemented as specified by the RenderingEngine interface.
byte[]	RawPixelsBean.getRegion(int arg0, long arg1)
long	RenderingBean.getRenderingDefId()
long	ThumbnailBean.getRenderingDefId()
List<List<Integer>>	RawPixelsBean.getResolutionDescriptions()
List<List<Integer>>	RenderingBean.getResolutionDescriptions()
int	RawPixelsBean.getResolutionLevel()
int	RenderingBean.getResolutionLevel()
int	RawPixelsBean.getResolutionLevels()
int	RenderingBean.getResolutionLevels()
int[]	RenderingBean.getRGBA(int w) Implemented as specified by the RenderingEngine interface.
byte[]	RawPixelsBean.getRow(int arg0, int arg1, int arg2, int arg3)
long	RawPixelsBean.getRowOffset(int arg0, int arg1, int arg2, int arg3)
int	RawPixelsBean.getRowSize()
byte[]	RawPixelsBean.getStack(int arg0, int arg1)
long	RawPixelsBean.getStackOffset(int arg0, int arg1)
long	RawPixelsBean.getStackSize()
byte[]	ThumbnailBean.getThumbnail(Integer sizeX, Integer sizeY)
byte[]	ThumbnailBean.getThumbnailByLongestSide(Integer size)
byte[]	ThumbnailBean.getThumbnailByLongestSideDirect(Integer size)
Map<Long,byte[]>	ThumbnailBean.getThumbnailByLongestSideSet(Integer size, Set<Long> pixelsIds)
byte[]	ThumbnailBean.getThumbnailDirect(Integer sizeX, Integer sizeY)
byte[]	ThumbnailBean.getThumbnailForSectionByLongestSideDirect(int theZ, int theT, Integer size)
byte[]	ThumbnailBean.getThumbnailForSectionDirect(int theZ, int theT, Integer sizeX, Integer sizeY)
Map<Long,byte[]>	ThumbnailBean.getThumbnailSet(Integer sizeX, Integer sizeY, Set<Long> pixelsIds)
byte[]	RawPixelsBean.getTile(int z, int c, int t, int x, int y, int w, int h)
int[]	RawPixelsBean.getTileSize()
int[]	RenderingBean.getTileSize()
byte[]	RawPixelsBean.getTimepoint(int arg0)
long	RawPixelsBean.getTimepointOffset(int arg0)
long	RawPixelsBean.getTimepointSize()
long	RawPixelsBean.getTotalSize()
boolean	SearchBean.hasNext()
boolean	RenderingBean.isActive(int w) Implemented as specified by the RenderingEngine interface.
boolean	SearchBean.isAllowLeadingWildcard()
boolean	SearchBean.isCaseSensitive()
boolean	RawPixelsBean.isFloat()
boolean	ThumbnailBean.isInProgress()
boolean	SearchBean.isMergedBatches()
boolean	RenderingBean.isPixelsTypeSigned() Implemented as specified by the RenderingEngine interface.
boolean	SearchBean.isReturnUnloaded()
boolean	RawPixelsBean.isSigned()
boolean	SearchBean.isUseProjections()
boolean	JobBean.jobError()
Timestamp	JobBean.jobFinished()
String	JobBean.jobMessage()
boolean	JobBean.jobRunning()
ome.model.jobs.JobStatus	JobBean.jobStatus()
void	SearchBean.lastresultsAsWorkingGroup()
void	RenderingBean.load() Implemented as specified by the RenderingEngine interface.
void	RenderingBean.loadRenderingDef(long renderingDefId) Implemented as specified by the RenderingEngine interface.
void	RenderingBean.lookupPixels(long pixelsId) Implemented as specified by the RenderingEngine interface.
boolean	RenderingBean.lookupRenderingDef(long pixelsId) Implemented as specified by the RenderingEngine interface.
ome.model.IObject	SearchBean.next()
void	SearchBean.not()
void	SearchBean.notAnnotatedBy(ome.model.internal.Details d)
void	SearchBean.notOwnedBy(ome.model.internal.Details d)
void	SearchBean.onlyAnnotatedBetween(Timestamp start, Timestamp stop)
void	SearchBean.onlyAnnotatedBy(ome.model.internal.Details d)
void	SearchBean.onlyAnnotatedWith(Class... classes)
void	SearchBean.onlyCreatedBetween(Timestamp start, Timestamp stop)
void	SearchBean.onlyIds(Long... ids)
void	SearchBean.onlyModifiedBetween(Timestamp start, Timestamp stop)
void	SearchBean.onlyOwnedBy(ome.model.internal.Details d)
<T extends ome.model.IObject> void	SearchBean.onlyType(Class<T> klass)
<T extends ome.model.IObject> void	SearchBean.onlyTypes(Class<T>... classes)
void	SearchBean.or()
void	JobBean.passivate() Does nothing.
void	RawFileBean.passivate()
void	RawPixelsBean.passivate()
void	RenderingBean.passivate()
void	SearchBean.passivate()
void	ThumbnailBean.passivate()
void	RawPixelsBean.prepare(Set<Long> pixelsIds)
byte[]	RawFileBean.read(long position, int length)
void	SearchBean.remove()
void	RenderingBean.removeCodomainMap(CodomainMapContext mapCtx) Implemented as specified by the RenderingEngine interface.
RGBBuffer	RenderingBean.render(PlaneDef pd) Implemented as specified by the RenderingEngine interface.
int[]	RenderingBean.renderAsPackedInt(PlaneDef pd) Implemented as specified by the RenderingEngine interface.
byte[]	RenderingBean.renderCompressed(PlaneDef pd) Implemented as specified by the RenderingEngine interface.
int[]	RenderingBean.renderProjectedAsPackedInt(int algorithm, int timepoint, int stepping, int start, int end) Implemented as specified by the RenderingEngine interface.
byte[]	RenderingBean.renderProjectedCompressed(int algorithm, int timepoint, int stepping, int start, int end) Implemented as specified by the RenderingEngine interface.
boolean	RawPixelsBean.requiresPixelsPyramid()
boolean	RenderingBean.requiresPixelsPyramid()
void	SearchBean.resetDefaults()
void	ThumbnailBean.resetDefaults()
long	RenderingBean.resetDefaultSettings(boolean save) Implemented as specified by the RenderingEngine interface.
<T extends ome.model.IObject> List<T>	SearchBean.results()
ome.model.core.OriginalFile	RawFileBean.save()
ome.model.core.Pixels	RawPixelsBean.save()
long	RenderingBean.saveAsNewSettings() Implemented as specified by the RenderingEngine interface.
void	RenderingBean.saveCurrentSettings() Implemented as specified by the RenderingEngine interface.
void	RenderingBean.setActive(int w, boolean active) Implemented as specified by the RenderingEngine interface.
void	SearchBean.setAllowLeadingWildcard(boolean allowLeadingWildcard)
void	SearchBean.setBatchSize(int size)
void	SearchBean.setCaseSentivice(boolean caseSensitive)
void	RenderingBean.setChannelLookupTable(int w, String lookup)
void	RenderingBean.setChannelWindow(int w, double start, double end) Implemented as specified by the RenderingEngine interface.
void	RenderingBean.setCodomainInterval(int start, int end) Implemented as specified by the RenderingEngine interface.
void	RenderingBean.setCompressionLevel(float percentage) Implemented as specified by the RenderingEngine interface.
void	RenderingBean.setDefaultT(int t) Implemented as specified by the RenderingEngine interface.
void	RenderingBean.setDefaultZ(int z) Implemented as specified by the RenderingEngine interface.
void	RawFileBean.setFileId(long fileId)
void	SearchBean.setIdOnly()
void	SearchBean.setMergedBatches(boolean merge)
String	JobBean.setMessage(String message)
void	RenderingBean.setModel(ome.model.enums.RenderingModel model) Implemented as specified by the RenderingEngine interface.
void	RenderingBean.setOverlays(Map<byte[],Integer> overlays) Deprecated. As of release 5.1.0, replaced by PlaneDef.setShapeIds(List).
boolean	ThumbnailBean.setPixelsId(long id)
void	RawPixelsBean.setPixelsId(long pixelsId, boolean bypassOriginalFile)
void	RawPixelsBean.setPlane(byte[] arg0, int arg1, int arg2, int arg3)
void	RenderingBean.setQuantizationMap(int w, ome.model.enums.Family family, double coefficient, boolean noiseReduction) Implemented as specified by the RenderingEngine interface.
void	RenderingBean.setQuantumStrategy(int bitResolution) Implemented as specified by the RenderingEngine interface.
void	RawPixelsBean.setRegion(int arg0, long arg1, byte[] arg2)
void	ThumbnailBean.setRenderingDefId(long id)
void	RawPixelsBean.setResolutionLevel(int resolutionLevel)
void	RenderingBean.setResolutionLevel(int resolutionLevel)
void	SearchBean.setReturnUnloaded(boolean returnUnloaded)
void	RenderingBean.setRGBA(int w, int red, int green, int blue, int alpha) Implemented as specified by the RenderingEngine interface.
void	RawPixelsBean.setRow(byte[] arg0, int arg1, int arg2, int arg3, int arg4)
void	RawPixelsBean.setStack(byte[] arg0, int arg1, int arg2, int arg3)
String	JobBean.setStatus(String status)
String	JobBean.setStatusAndMessage(String status, String message)
void	RawPixelsBean.setTile(byte[] data, int z, int c, int t, int x, int y, int w, int h)
void	RawPixelsBean.setTimepoint(byte[] arg0, int arg1)
void	SearchBean.setUseProjections(boolean useProjections)
long	RawFileBean.size()
long	JobBean.submit(ome.model.jobs.Job newJob)
boolean	ThumbnailBean.thumbnailExists(Integer sizeX, Integer sizeY)
boolean	RawFileBean.truncate(long length)
void	SearchBean.unordered()
void	RenderingBean.updateCodomainMap(CodomainMapContext mapCtx) Implemented as specified by the RenderingEngine interface.
void	RawFileBean.write(byte[] buf, long position, int length)

Uses of RolesAllowed in ome.services.delete

Methods in ome.services.delete with annotations of type RolesAllowed

Modifier and Type	Method and Description
List<ome.model.IObject>	DeleteBean.checkImageDelete(long id, boolean force)
void	DeleteBean.deleteChannels(long imageId)
void	DeleteBean.deleteImage(long id, boolean force)
void	DeleteBean.deleteImages(Set<Long> ids, boolean force)
void	DeleteBean.deleteImagesByDataset(long datasetId, boolean force)
void	DeleteBean.deletePlate(long plateId)
void	DeleteBean.deleteSettings(long imageId)
List<ome.model.IObject>	DeleteBean.previewImageDelete(long id, boolean force) This uses DeleteBean.IMAGE_QUERY to load all the subordinate metadata of the Image which will be deleted.

Uses of RolesAllowed in ome.services.projection

Methods in ome.services.projection with annotations of type RolesAllowed

Modifier and Type	Method and Description
long	ProjectionBean.projectPixels(long pixelsId, ome.model.enums.PixelsType pixelsType, int algorithm, int tStart, int tEnd, List<Integer> channels, int stepping, int zStart, int zEnd, String name)
byte[]	ProjectionBean.projectStack(long pixelsId, ome.model.enums.PixelsType pixelsType, int algorithm, int timepoint, int channelIndex, int stepping, int start, int end)

Uses of RolesAllowed in ome.services.sessions

Methods in ome.services.sessions with annotations of type RolesAllowed

Modifier and Type	Method and Description
int	SessionBean.closeSession(ome.model.meta.Session session)
ome.model.meta.Session	SessionBean.createSession(Principal principal, String credentials)
ome.model.meta.Session	SessionBean.createSessionWithTimeout(Principal principal, long milliseconds)
ome.model.meta.Session	SessionBean.createSessionWithTimeouts(Principal principal, long timeToLiveMilliseconds, long timeToIdleMilliseconds)
ome.model.meta.Session	SessionBean.createUserSession(long timeToLiveMs, long timeToIdleMs, String defaultGroup)
Object	SessionBean.getInput(String session, String key)
Set<String>	SessionBean.getInputKeys(String session)
Map<String,Object>	SessionBean.getInputs(String session)
List<ome.model.meta.Session>	SessionBean.getMyOpenAgentSessions(String agent)
List<ome.model.meta.Session>	SessionBean.getMyOpenClientSessions()
List<ome.model.meta.Session>	SessionBean.getMyOpenSessions()
Object	SessionBean.getOutput(String session, String key)
Set<String>	SessionBean.getOutputKeys(String session)
Map<String,Object>	SessionBean.getOutputs(String session)
int	SessionBean.getReferenceCount(String sessionUuid)
ome.model.meta.Session	SessionBean.getSession(String sessionUuid)
void	SessionBean.setInput(String session, String key, Object object)
void	SessionBean.setOutput(String session, String key, Object object)
ome.model.meta.Session	SessionBean.updateSession(ome.model.meta.Session session)

Uses of RolesAllowed in ome.services.sharing

Methods in ome.services.sharing with annotations of type RolesAllowed

Modifier and Type	Method and Description
void	ShareBean.activate(long shareId)
ome.model.annotations.CommentAnnotation	ShareBean.addComment(long shareId, String commentText)
void	ShareBean.addGuest(long shareId, String emailAddress)
void	ShareBean.addGuests(long shareId, String... emailAddresses)
<T extends ome.model.IObject> void	ShareBean.addObject(long shareId, T object)
<T extends ome.model.IObject> void	ShareBean.addObjects(long shareId, T... objects)
ome.model.annotations.CommentAnnotation	ShareBean.addReply(long shareId, String comment, ome.model.annotations.CommentAnnotation replyTo)
void	ShareBean.addUser(long shareId, ome.model.meta.Experimenter exp)
void	ShareBean.addUsers(long shareId, ome.model.meta.Experimenter... exps)
void	ShareBean.closeShare(long shareId)
<T extends ome.model.IObject> long	ShareBean.createShare(String description, Timestamp expiration, List<T> items, List<ome.model.meta.Experimenter> exps, List<String> guests, boolean enabled)
void	ShareBean.deactivate()
void	ShareBean.deleteComment(ome.model.annotations.Annotation comment)
Map<String,ome.model.meta.Experimenter>	ShareBean.getActiveConnections(long shareId)
Set<String>	ShareBean.getAllGuests(long shareId)
Set<ome.model.meta.Experimenter>	ShareBean.getAllMembers(long shareId)
Set<String>	ShareBean.getAllUsers(long shareId)
Map<Long,Long>	ShareBean.getCommentCount(Set<Long> ids)
List<ome.model.annotations.Annotation>	ShareBean.getComments(long shareId)
<T extends ome.model.IObject> Map<Class<T>,List<Long>>	ShareBean.getContentMap(long shareId)
<T extends ome.model.IObject> List<T>	ShareBean.getContents(long shareId)
int	ShareBean.getContentSize(long shareId)
<T extends ome.model.IObject> List<T>	ShareBean.getContentSubList(long shareId, int start, int finish)
List<ome.model.meta.Event>	ShareBean.getEvents(long shareId, ome.model.meta.Experimenter experimenter, Timestamp from, Timestamp to)
Map<Long,Long>	ShareBean.getMemberCount(Set<Long> shareIds)
Set<ome.model.meta.Session>	ShareBean.getMemberShares(boolean active)
Set<ome.model.meta.Session>	ShareBean.getMemberSharesFor(ome.model.meta.Experimenter user, boolean active)
Set<ome.model.meta.Session>	ShareBean.getOwnShares(boolean active)
Map<String,ome.model.meta.Experimenter>	ShareBean.getPastConnections(long shareId)
ome.model.meta.Share	ShareBean.getShare(long sessionId)
Set<ome.model.meta.Session>	ShareBean.getSharesOwnedBy(ome.model.meta.Experimenter user, boolean active)
void	ShareBean.invalidateConnection(long shareId, ome.model.meta.Experimenter exp)
void	ShareBean.notifyMembersOfShare(long shareId, String subject, String message, boolean html)
void	ShareBean.removeGuest(long shareId, String emailAddress)
void	ShareBean.removeGuests(long shareId, String... emailAddresses)
<T extends ome.model.IObject> void	ShareBean.removeObject(long shareId, T object)
<T extends ome.model.IObject> void	ShareBean.removeObjects(long shareId, T... objects)
void	ShareBean.removeUser(long shareId, ome.model.meta.Experimenter exp)
void	ShareBean.removeUsers(long shareId, List<ome.model.meta.Experimenter> exps)
void	ShareBean.setActive(long shareId, boolean active)
void	ShareBean.setDescription(long shareId, String description)
void	ShareBean.setExpiration(long shareId, Timestamp expiration)