Deprecated API

Contents

• Deprecated Interfaces
• Deprecated Classes
• Deprecated Exceptions
• Deprecated Methods

Deprecated Interfaces

Interface and Description
ome.services.graphs.GraphSpec will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphStepFactory will be removed in OMERO 5.2, so use the new graphs implementation
omero.cmd.graphs.IGraphModifyRequest will be removed in OMERO 5.3, so use the new graphs implementation

Deprecated Classes

Class and Description
ome.services.graphs.AbstractHierarchyGraphSpec will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.AbstractStepFactory will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.AnnotationGraphSpec will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.BaseGraphSpec will be removed in OMERO 5.2, so use the new graphs implementation
omero.cmd.graphs.ChgrpFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.ChgrpI will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.chgrp.ChgrpStep will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.chgrp.ChgrpStepFactory will be removed in OMERO 5.2, so use the new graphs implementation
omero.cmd.graphs.ChmodFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.ChmodI will be removed in OMERO 5.2, so use the new graphs implementation
omero.cmd.graphs.ChownFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.ChownI will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.chown.ChownStep will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.chown.ChownStepFactory will be removed in OMERO 5.2, so use the new graphs implementation
omero.cmd.graphs.DeleteFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.DeleteI will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.delete.DeleteStep will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.delete.DeleteStepFactory will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.delete.Deletion all except setup and Deletion.deleteFiles(SetMultimap) will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.export.ExporterIndex will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.export.ExporterStep will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.export.ExporterStepFactory will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.delete.files.FileDeleterGraphState will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphEntry will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphOpts will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.GraphSpecListI will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphSpecPostProcessor will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphState will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphStep will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphSteps will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.GraphTables will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.LightSourceGraphSpec will be removed in OMERO 5.2, so use the new graphs implementation
omero.cmd.graphs.Preprocessor will be removed in OMERO 5.2, so use the new graphs implementation
ome.services.graphs.RenderingDefGraphSpec will be removed in OMERO 5.2, so use the new graphs implementation

Deprecated Exceptions

Exceptions and Description
ome.services.graphs.GraphConstraintException will be removed in OMERO 5.2, so use the new graphs implementation

Deprecated Methods

Method and Description
ome.services.blitz.impl.ServiceFactoryI.close(Current)
omero.cmd.graphs.GraphUtil.combineFacadeRequests(List) because facade classes are deprecated
omero.cmd.graphs.ChmodI.copy()
ome.logic.LdapImpl.createUserFromLdap(String, String)
omero.cmd.graphs.ChmodI.finish()
pojos.ImageAcquisitionData.getAirPressure() Replaced by ImageAcquisitionData.getAirPressure(UnitsPressure)
ome.system.ServiceFactory.getContext()
pojos.FilterData.getCutIn() Replaced by FilterData.getCutIn(UnitsLength)
pojos.FilterData.getCutInTolerance() Replaced by FilterData.getCutInTolerance(UnitsLength)
pojos.FilterData.getCutOut() Replaced by FilterData.getCutOut(UnitsLength)
pojos.FilterData.getCutOutTolerance() Replaced by FilterData.getCutOutTolerance(UnitsLength)
ome.formats.OMEROMetadataStoreClient.getDefaultGroupLevel()
pojos.ChannelAcquisitionData.getDetectorSettingsReadOutRate() Replaced by ChannelAcquisitionData.getDetectorSettingsReadOutRate(UnitsFrequency)
pojos.ChannelAcquisitionData.getDetectorSettingsVoltage() Replaced by ChannelAcquisitionData.getDetectorSettingsVoltage(UnitsElectricPotential)
pojos.ChannelData.getEmissionWavelength() Replaced by ChannelData.getEmissionWavelength(UnitsLength)
pojos.ChannelData.getExcitationWavelength() Replaced by ChannelData.getExcitationWavelength(UnitsLength)
pojos.ShapeSettingsData.getFontSize() Replaced by ShapeSettingsData.getFontSize(UnitsLength)
pojos.LightSourceData.getLaserRepetitionRate() Replaced by LightSourceData.getLaserRepetitionRate(UnitsFrequency)
pojos.LightSourceData.getLaserWavelength() Replaced by LightSourceData.getLaserWavelength(UnitsLength)
pojos.ChannelAcquisitionData.getLightSettingsWavelength() Replaced by ChannelAcquisitionData.getLightSettingsWavelength(UnitsLength)
pojos.ChannelData.getPinholeSize() Replaced by ChannelData.getPinholeSize(UnitsLength)
ome.io.nio.PixelsService.getPixelBuffer(Pixels) In the future callers should use the more descriptive PixelsService.getPixelBuffer(Pixels, boolean).
pojos.PixelsData.getPixelSizeX() Replaced by PixelsData.getPixelSizeX(UnitsLength)
pojos.PixelsData.getPixelSizeY() Replaced by PixelsData.getPixelSizeY(UnitsLength)
pojos.PixelsData.getPixelSizeZ() Replaced by PixelsData.getPixelSizeZ(UnitsLength)
pojos.ImageAcquisitionData.getPositionX() Replaced by ImageAcquisitionData.getPositionX(UnitsLength)
pojos.WellSampleData.getPositionX() Replaced by WellSampleData.getPositionX(UnitsLength)
pojos.ImageAcquisitionData.getPositionY() Replaced by ImageAcquisitionData.getPositionY(UnitsLength)
pojos.WellSampleData.getPositionY() Replaced by WellSampleData.getPositionY(UnitsLength)
pojos.ImageAcquisitionData.getPositionZ() Replaced by ImageAcquisitionData.getPositionZ(UnitsLength)
pojos.LightSourceData.getPower() Replaced by LightSourceData.getPower(UnitsPower)
omero.client.getServiceFactory()
pojos.ShapeSettingsData.getStrokeWidth() Replaced by ShapeSettingsData.getStrokeWidth(UnitsLength)
pojos.ImageAcquisitionData.getTemperature() Replaced by ImageAcquisitionData.getTemperature(UnitsTemperature)
ome.logic.RepositoryInfoImpl.getUsageFraction()
ome.logic.RepositoryInfoImpl.getUsedSpaceInKilobytes()
pojos.DetectorData.getVoltage() Replaced by DetectorData.getVoltage(UnitsElectricPotential)
pojos.PlateData.getWellOriginX() Replaced by PlateData.getWellOriginX(UnitsLength)
pojos.PlateData.getWellOriginY() Replaced by PlateData.getWellOriginY(UnitsLength)
pojos.ObjectiveData.getWorkingDistance() Replaced by ObjectiveData.getWorkingDistance(UnitsLength)
omero.cmd.Helper.graphException(GraphException, long, long)
ome.services.blitz.impl.ProcessorCallbackI.isAccepted(boolean, String, String, Current)
ome.logic.LdapImpl.loadLdapGroups(String, DistinguishedName)
omero.sys.ParametersI.map()
ome.services.blitz.repo.PublicRepositoryI.persistLogFile(OriginalFile, Current)
ome.api.IAdmin.reportForgottenPassword(String, String)
pojos.ImageAcquisitionData.setAirPressure(double) Replaced by ImageAcquisitionData.setAirPressure(Pressure)
pojos.ChannelAcquisitionData.setDetectorSettingsReadOutRate(double) Replaced by ChannelAcquisitionData.setDetectorSettingsReadOutRate(Frequency)
pojos.ChannelAcquisitionData.setDetectorSettingsVoltage(double) Replaced by ChannelAcquisitionData.setDetectorSettingsVoltage(ElectricPotential)
ome.api.ILdap.setDN(Long, String) As of release 5.1, relevant model objects have the "ldap" property added to their state.
ome.logic.LdapImpl.setDN(Long, String)
pojos.ChannelData.setEmissionWavelength(double) Replaced by ChannelData.setEmissionWavelength(Length)
pojos.ChannelData.setExcitationWavelength(double) Replaced by ChannelData.setExcitationWavelength(Length)
pojos.ShapeSettingsData.setFontSize(int) Replaced by ShapeSettingsData.setFontSize(Length)
pojos.ChannelAcquisitionData.setLightSettingsWavelength(double) Replaced by ChannelAcquisitionData.setLightSettingsWavelength(Length)
ome.services.RenderingBean.setOverlays(Map) As of release 5.1.0, replaced by PlaneDef.setShapeIds(List).
pojos.ChannelData.setPinholeSize(double) Replaced by ChannelData.setPinholeSize(Length)
pojos.PixelsData.setPixelSizeX(double) Replaced by PixelsData.setPixelSizeX(Length)
pojos.PixelsData.setPixelSizeY(double) Replaced by PixelsData.setPixelSizeY(Length)
pojos.PixelsData.setPixelSizeZ(double) Replaced by PixelsData.setPixelSizeZ(Length)
pojos.ImageAcquisitionData.setPositionX(double) Replaced by ImageAcquisitionData.setPositionX(Length)
pojos.ImageAcquisitionData.setPositionY(double) Replaced by ImageAcquisitionData.setPositionY(Length)
pojos.ImageAcquisitionData.setPositionZ(double) Replaced by ImageAcquisitionData.setPositionZ(Length)
pojos.ShapeSettingsData.setStrokeWidth(Double) Replaced by ShapeSettingsData.setStrokeWidth(Length)
pojos.ImageAcquisitionData.setTemperature(double) Replaced by ImageAcquisitionData.setTemperature(Temperature)