Package loci.formats.in

Class ZeissCZIReader.SubBlock

java.lang.Object

loci.formats.in.ZeissCZIReader.Segment

loci.formats.in.ZeissCZIReader.SubBlock

Enclosing class:

ZeissCZIReader

class ZeissCZIReader.SubBlock
extends ZeissCZIReader.Segment

Segment with ID "ZISRAWSUBBLOCK".

Field Summary

Fields

Modifier and Type	Field	Description
int	attachmentSize
int	col
int	coreIndex
private long	dataOffset
long	dataSize
ZeissCZIReader.DirectoryEntry	directoryEntry
private Double	exposureTime
String	metadata
int	metadataSize
int	pixelTypeIndex
int	planeIndex
int	resolutionIndex
int	row
private ome.units.quantity.Length	stageX
private ome.units.quantity.Length	stageY
private ome.units.quantity.Length	stageZ
private Double	timestamp
int	x
int	y

Fields inherited from class loci.formats.in.ZeissCZIReader.Segment

allocatedSize, filename, id, startingPosition, stream, usedSize

Constructor Summary

Constructors

Constructor	Description
SubBlock()
SubBlock(ZeissCZIReader.SubBlock model)

Method Summary

Modifier and Type	Method	Description
void	fillInData()
int	getPhysicalHeight()
int	getPhysicalWidth()
private void	parseMetadata()
byte[]	readPixelData()
byte[]	readPixelData(loci.common.RandomAccessInputStream s)
byte[]	readPixelData(loci.common.RandomAccessInputStream s, loci.common.Region tile, byte[] buf)
String	toString()

Methods inherited from class loci.formats.in.ZeissCZIReader.Segment

close, getStream

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

metadataSize

public int metadataSize

attachmentSize

public int attachmentSize

dataSize

public long dataSize

directoryEntry

public ZeissCZIReader.DirectoryEntry directoryEntry

metadata

public String metadata

coreIndex

public int coreIndex

resolutionIndex

public int resolutionIndex

planeIndex

public int planeIndex

pixelTypeIndex

public int pixelTypeIndex

dataOffset

private long dataOffset

stageX

private ome.units.quantity.Length stageX

stageY

private ome.units.quantity.Length stageY

stageZ

private ome.units.quantity.Length stageZ

timestamp

private Double timestamp

exposureTime

private Double exposureTime

x

public int x

y

public int y

row

public int row

col

public int col

Constructor Details

SubBlock

public SubBlock()

SubBlock

public SubBlock(ZeissCZIReader.SubBlock model)

Method Details

toString

public String toString()

Overrides:

toString in class Object

fillInData

public void fillInData()
                throws IOException

Overrides:

fillInData in class ZeissCZIReader.Segment

Throws:

IOException

readPixelData

public byte[] readPixelData()
                     throws FormatException,
IOException

Throws:

FormatException

IOException

readPixelData

public byte[] readPixelData(loci.common.RandomAccessInputStream s)
                     throws FormatException,
IOException

Throws:

FormatException

IOException

readPixelData

public byte[] readPixelData(loci.common.RandomAccessInputStream s,
 loci.common.Region tile,
 byte[] buf)
                     throws FormatException,
IOException

Throws:

FormatException

IOException

getPhysicalWidth

public int getPhysicalWidth()
                     throws FormatException

Throws:

FormatException

getPhysicalHeight

public int getPhysicalHeight()
                      throws FormatException

Throws:

FormatException

parseMetadata

private void parseMetadata()
                    throws IOException

Throws:

IOException