Package loci.formats.in

Class SlideBook7Reader.DataLoader

java.lang.Object

loci.formats.in.SlideBook7Reader.DataLoader

Enclosing class:

SlideBook7Reader

class SlideBook7Reader.DataLoader
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static final int	kMaxNumberOpenFiles
ArrayList<SlideBook7Reader.CImageGroup>	mCImageGroupList
(package private) TreeMap<Integer,String>	mCounterToPathMap
int	mCurrentFileCounter
String	mErrorMessage
SlideBook7Reader.CSBFile70	mFile
(package private) HashMap<String,loci.common.RandomAccessInputStream>	mPathToStreamMap
String	mSlidePath
SlideBook7Reader.CSlideRecord70	mSlideRecord

Constructor Summary

Constructors

Constructor	Description
DataLoader(String inSlidePath)

Method Summary

Modifier and Type	Method	Description
(package private) short	ByteArrayToShort(byte[] bytes, int offset)
void	CloseFile()
SlideBook7Reader.CImageGroup	GetImageGroup(int inCaptureId)
int	GetNumCaptures()
String	GetRootDirectory()
Boolean	LoadMetadata()
boolean	ReadPlane(int inCaptureId, byte[] ouBuf, int inPositionIndex, int inTimepointIndex, int inZPlaneIndex, int inChannelIndex)
Boolean	ReadSld()
Boolean	ReadSld(InputStream inInputStream)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

mSlidePath

public String mSlidePath

mErrorMessage

public String mErrorMessage

mFile

public SlideBook7Reader.CSBFile70 mFile

mSlideRecord

public SlideBook7Reader.CSlideRecord70 mSlideRecord

mCImageGroupList

public ArrayList<SlideBook7Reader.CImageGroup> mCImageGroupList

mPathToStreamMap

HashMap<String,loci.common.RandomAccessInputStream> mPathToStreamMap

mCounterToPathMap

TreeMap<Integer,String> mCounterToPathMap

kMaxNumberOpenFiles

public static final int kMaxNumberOpenFiles

See Also:

• Constant Field Values

mCurrentFileCounter

public int mCurrentFileCounter

Constructor Details

DataLoader

public DataLoader(String inSlidePath)

Method Details

LoadMetadata

public Boolean LoadMetadata()

ReadSld

public Boolean ReadSld()
                throws FileNotFoundException

Throws:

FileNotFoundException

ReadSld

public Boolean ReadSld(InputStream inInputStream)
                throws FileNotFoundException

Throws:

FileNotFoundException

GetNumCaptures

public int GetNumCaptures()

GetImageGroup

public SlideBook7Reader.CImageGroup GetImageGroup(int inCaptureId)

ReadPlane

public boolean ReadPlane(int inCaptureId,
 byte[] ouBuf,
 int inPositionIndex,
 int inTimepointIndex,
 int inZPlaneIndex,
 int inChannelIndex)
                  throws IOException

Throws:

IOException

ByteArrayToShort

short ByteArrayToShort(byte[] bytes,
 int offset)

CloseFile

public void CloseFile()
               throws IOException

Throws:

IOException

GetRootDirectory

public String GetRootDirectory()