Package loci.formats.in

Class SlideBook7Reader.CSBFile70

java.lang.Object

loci.formats.in.SlideBook7Reader.CSBFile70

Enclosing class:

SlideBook7Reader

class SlideBook7Reader.CSBFile70
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static final String	kAnnotationRecordFilename
static final String	kAuxDataFilename
static final String	kBinaryFileSuffix
static final String	kChannelRecordFilename
static final String	kElapsedTimesFilename
static final String	kImageDirSuffix
static final String	kImageRecordFilename
static final String	kMaskRecordFilename
static final int	kNumDigitsInTimepoint
static final String	kRootDirSuffix
static final String	kSAPositionDataFilename
static final String	kSlideSuffix
static final String	kStagePositionDataFilename
static final String	kZBinaryFileSuffix
static final String	kZSlideSuffix
boolean	mIsCompressed
String	mSlidePath

Constructor Summary

Constructors

Constructor	Description
CSBFile70(String inSlidePath)

Method Summary

Modifier and Type	Method	Description
Integer	GetChannelIndexOfPath(String inPath)
String	GetHistogramDataFile(String inTitle, Integer inChannel, Integer inTimepoint)
String	GetImageDataFile(String inTitle, Integer inChannel, Integer inTimepoint)
String	GetImageGroupDirectory(String inTitle)
String[]	GetListOfHistogramDataFiles(String inTitle)
String[]	GetListOfHistogramSummaryFiles(String inTitle)
String[]	GetListOfImageDataFiles(String inTitle)
String[]	GetListOfImageGroupTitles()
String[]	GetListOfMaskDataFiles(String inTitle)
protected String[]	getListOfNpyDataFiles(String inTitle, String inStartWith)
String	GetMaskDataFile(String inTitle, Integer inTimepoint)
String	GetSlideRootDirectory()
Integer	GetTimepointOfPath(String inPath)
String	RenamePathToTimepoint0(String inPath)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

kSlideSuffix

public static final String kSlideSuffix

See Also:

• Constant Field Values

kZSlideSuffix

public static final String kZSlideSuffix

See Also:

• Constant Field Values

kRootDirSuffix

public static final String kRootDirSuffix

See Also:

• Constant Field Values

kImageDirSuffix

public static final String kImageDirSuffix

See Also:

• Constant Field Values

kBinaryFileSuffix

public static final String kBinaryFileSuffix

See Also:

• Constant Field Values

kZBinaryFileSuffix

public static final String kZBinaryFileSuffix

See Also:

• Constant Field Values

kImageRecordFilename

public static final String kImageRecordFilename

See Also:

• Constant Field Values

kChannelRecordFilename

public static final String kChannelRecordFilename

See Also:

• Constant Field Values

kAnnotationRecordFilename

public static final String kAnnotationRecordFilename

See Also:

• Constant Field Values

kMaskRecordFilename

public static final String kMaskRecordFilename

See Also:

• Constant Field Values

kAuxDataFilename

public static final String kAuxDataFilename

See Also:

• Constant Field Values

kElapsedTimesFilename

public static final String kElapsedTimesFilename

See Also:

• Constant Field Values

kSAPositionDataFilename

public static final String kSAPositionDataFilename

See Also:

• Constant Field Values

kStagePositionDataFilename

public static final String kStagePositionDataFilename

See Also:

• Constant Field Values

kNumDigitsInTimepoint

public static final int kNumDigitsInTimepoint

See Also:

• Constant Field Values

mSlidePath

public String mSlidePath

mIsCompressed

public boolean mIsCompressed

Constructor Details

CSBFile70

public CSBFile70(String inSlidePath)

Method Details

GetSlideRootDirectory

public String GetSlideRootDirectory()

GetListOfImageGroupTitles

public String[] GetListOfImageGroupTitles()

GetImageGroupDirectory

public String GetImageGroupDirectory(String inTitle)

GetImageDataFile

public String GetImageDataFile(String inTitle,
 Integer inChannel,
 Integer inTimepoint)

GetMaskDataFile

public String GetMaskDataFile(String inTitle,
 Integer inTimepoint)

GetHistogramDataFile

public String GetHistogramDataFile(String inTitle,
 Integer inChannel,
 Integer inTimepoint)

GetChannelIndexOfPath

public Integer GetChannelIndexOfPath(String inPath)

GetTimepointOfPath

public Integer GetTimepointOfPath(String inPath)

RenamePathToTimepoint0

public String RenamePathToTimepoint0(String inPath)

GetListOfImageDataFiles

public String[] GetListOfImageDataFiles(String inTitle)

GetListOfMaskDataFiles

public String[] GetListOfMaskDataFiles(String inTitle)

GetListOfHistogramDataFiles

public String[] GetListOfHistogramDataFiles(String inTitle)

GetListOfHistogramSummaryFiles

public String[] GetListOfHistogramSummaryFiles(String inTitle)

getListOfNpyDataFiles

protected String[] getListOfNpyDataFiles(String inTitle,
 String inStartWith)