Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.gui |
Package containing Bio-Formats graphical user interface code.
|
loci.formats.in |
Package containing Bio-Formats file format readers.
|
loci.plugins.util |
Utility classes and methods for the Bio-Formats plugins for ImageJ.
|
Modifier and Type | Class and Description |
---|---|
class |
ChannelFiller
For indexed color data representing true color, factors out
the indices, replacing them with the color table values directly.
|
class |
ChannelMerger
Logic to automatically merge channels in a file.
|
class |
ChannelSeparator
Logic to automatically separate the channels in a file.
|
class |
DimensionSwapper
Handles swapping the dimension order of an image series.
|
class |
FileStitcher
Logic to stitch together files with similar names.
|
class |
Memoizer
ReaderWrapper implementation which caches the state of the
delegate (including and other ReaderWrapper instances)
after Memoizer.setId(String) has been called. |
class |
MinMaxCalculator
Logic to compute minimum and maximum values for each channel.
|
class |
TileStitcher |
Modifier and Type | Method and Description |
---|---|
ReaderWrapper |
ReaderWrapper.duplicate(java.lang.Class<? extends IFormatReader> imageReaderClass)
Performs a deep copy of the reader, including nested wrapped readers.
|
private ReaderWrapper |
ReaderWrapper.duplicateRecurse(java.lang.Class<? extends IFormatReader> imageReaderClass) |
protected abstract ReaderWrapper |
WrappedReader.getHelper()
Get the helper class that reads images
|
Modifier and Type | Method and Description |
---|---|
protected void |
WrappedReader.callDeferredSetters(ReaderWrapper helper)
A helper may not exist before initFile() is called.
|
Modifier and Type | Class and Description |
---|---|
class |
BufferedImageReader
A reader wrapper for reading image planes as BufferedImage objects.
|
Modifier and Type | Method and Description |
---|---|
protected ReaderWrapper |
FilePatternReader.getHelper() |
Modifier and Type | Class and Description |
---|---|
class |
ImageProcessorReader
A low-level reader for
ImageProcessor objects. |
class |
VirtualReader
TODO
|
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