Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.ome |
Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download.
|
loci.formats.tools |
Package containing utility methods corresponding
to the Bio-Formats command line tools.
|
loci.plugins.in |
Bio-Formats Importer plugin for ImageJ.
|
loci.plugins.util |
Utility classes and methods for the Bio-Formats plugins for ImageJ.
|
Modifier and Type | Method and Description |
---|---|
static IMetadata |
MetadataTools.createOMEXMLMetadata()
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package. |
Modifier and Type | Interface and Description |
---|---|
interface |
OMEXMLMetadata |
Modifier and Type | Method and Description |
---|---|
private IMetadata |
MakeTestOmeTiff.createMetadata(java.lang.String name,
CoreMetadata info) |
Modifier and Type | Field and Description |
---|---|
protected IMetadata |
ImportProcess.meta |
Modifier and Type | Method and Description |
---|---|
IMetadata |
ImportProcess.getOMEMetadata()
Valid only after
ImportStep.READER . |
Modifier and Type | Method and Description |
---|---|
private double |
Calibrator.computeVariableTimeInterval(IMetadata meta,
int series) |
private java.lang.String |
ImagePlusReader.constructSliceLabel(int ndx,
IFormatReader r,
IMetadata meta,
int series,
int zCount,
int cCount,
int tCount) |
Modifier and Type | Method and Description |
---|---|
static void |
ROIHandler.openROIs(IMetadata retrieve,
ij.ImagePlus[] images)
Look for ROIs in the given OMEXMLMetadata; if any are present, apply
them to the given images and display them in the ROI manager.
|
static void |
ROIHandler.openROIs(IMetadata retrieve,
ij.ImagePlus[] images,
boolean isOMERO)
Opens the rois and converts them into ImageJ Rois.
|
static void |
ROIHandler.openROIs(IMetadata retrieve,
ij.ImagePlus[] images,
boolean isOMERO,
java.lang.String roisMode)
Opens the rois and converts them into ImageJ Rois.
|
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