Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.in |
Package containing Bio-Formats file format readers.
|
loci.formats.services | |
loci.formats.tools |
Package containing utility methods corresponding
to the Bio-Formats command line tools.
|
Modifier and Type | Class and Description |
---|---|
class |
SwappableMetadata
Extends
CoreMetadata to include the notion of an "input order" for planes:
the input order being the order planes are stored on disk. |
Modifier and Type | Field and Description |
---|---|
private ArrayList<CoreMetadata> |
FileStitcher.core
Core metadata.
|
private List<CoreMetadata> |
DimensionSwapper.core
Core metadata associated with this dimension swapper.
|
protected List<CoreMetadata> |
FormatReader.core
Core metadata values.
|
Modifier and Type | Method and Description |
---|---|
CoreMetadata |
SwappableMetadata.clone(IFormatReader r,
int coreIndex) |
CoreMetadata |
CoreMetadata.clone(IFormatReader r,
int coreIndex) |
Modifier and Type | Method and Description |
---|---|
List<CoreMetadata> |
FileStitcher.getCoreMetadataList() |
List<CoreMetadata> |
DimensionSwapper.getCoreMetadataList() |
List<CoreMetadata> |
ReaderWrapper.getCoreMetadataList() |
List<CoreMetadata> |
ImageReader.getCoreMetadataList() |
List<CoreMetadata> |
IFormatReader.getCoreMetadataList()
Obtains the core metadata values for the current file.
|
List<CoreMetadata> |
FormatReader.getCoreMetadataList() |
Modifier and Type | Method and Description |
---|---|
static void |
MetadataTools.populateMetadata(MetadataStore store,
int series,
String imageName,
CoreMetadata coreMeta)
Populates the given
MetadataStore , for the specified series, using
the values from the provided CoreMetadata . |
Constructor and Description |
---|
CoreMetadata(CoreMetadata c) |
Modifier and Type | Field and Description |
---|---|
CoreMetadata |
VolocityReader.Stack.core |
Modifier and Type | Field and Description |
---|---|
private List<CoreMetadata> |
ND2Handler.core |
private List<CoreMetadata> |
LeicaHandler.core |
Modifier and Type | Method and Description |
---|---|
List<CoreMetadata> |
FilePatternReader.getCoreMetadataList() |
List<CoreMetadata> |
ND2Handler.getCoreMetadataList() |
List<CoreMetadata> |
LeicaHandler.getCoreMetadataList() |
Modifier and Type | Method and Description |
---|---|
private void |
ZeissCZIReader.convertPixelType(CoreMetadata ms0,
int pixelType) |
Constructor and Description |
---|
ND2Handler(List<CoreMetadata> core,
boolean populateXY,
int nImages) |
ND2Handler(List<CoreMetadata> core,
int nImages) |
Modifier and Type | Method and Description |
---|---|
void |
OMEXMLServiceImpl.addModuloAlong(OMEXMLMetadata meta,
CoreMetadata core,
int imageIdx) |
void |
OMEXMLService.addModuloAlong(OMEXMLMetadata omexmlMeta,
CoreMetadata core,
int image)
Adds ModuloAlong* annotations to the given OME-XML metadata object,
using the given CoreMetadata object to determine modulo dimensions.
|
Modifier and Type | Method and Description |
---|---|
private IMetadata |
MakeTestOmeTiff.createMetadata(String name,
CoreMetadata info) |
private BufferedImage |
MakeTestOmeTiff.createPlane(String name,
CoreMetadata info,
int no) |
private OMETiffWriter |
MakeTestOmeTiff.createWriter(String name,
CoreMetadata info,
String id) |
void |
MakeTestOmeTiff.makeOmeTiff(String name,
CoreMetadata info) |
private void |
MakeTestOmeTiff.writeData(String name,
CoreMetadata info,
String id,
OMETiffWriter out) |
Copyright © 2017 Open Microscopy Environment