Package | Description |
---|---|
loci.formats.in |
Package containing Bio-Formats file format readers.
|
loci.formats.meta |
Package containing core Bio-Formats metadata interfaces for the OME data model.
|
loci.formats.out |
Package containing Bio-Formats file format writers.
|
loci.formats.services |
Modifier and Type | Field and Description |
---|---|
private OMEXMLMetadata |
OMETiffReader.meta |
private OMEXMLMetadata |
FakeReader.omeXmlMetadata |
Modifier and Type | Method and Description |
---|---|
OMEXMLMetadata |
FakeReader.getOmeXmlMetadata() |
Modifier and Type | Method and Description |
---|---|
void |
ModuloAnnotation.setModulo(OMEXMLMetadata meta,
Modulo m)
Set the value of this annotation using the given Modulo object
|
Modifier and Type | Field and Description |
---|---|
private OMEXMLMetadata |
OMETiffWriter.omeMeta |
Modifier and Type | Method and Description |
---|---|
private void |
OMETiffWriter.populateImage(OMEXMLMetadata omeMeta,
int series) |
private void |
OMETiffWriter.populateTiffData(OMEXMLMetadata omeMeta,
int[] zct,
int ifd,
int series,
int plane) |
Modifier and Type | Method and Description |
---|---|
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata()
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata() |
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata(String xml)
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata(String xml) |
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata(String xml,
String version)
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata(String xml,
String version) |
OMEXMLMetadata |
OMEXMLService.getOMEMetadata(MetadataRetrieve src)
Returns a
OMEXMLMetadata object with the same
contents as the given MetadataRetrieve, converting it if necessary. |
OMEXMLMetadata |
OMEXMLServiceImpl.getOMEMetadata(MetadataRetrieve src) |
Modifier and Type | Method and Description |
---|---|
void |
OMEXMLService.addMetadataOnly(OMEXMLMetadata omexmlMeta,
int image)
Insert a MetadataOnly element under the Image specified by 'index' in the
given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.addMetadataOnly(OMEXMLMetadata omexmlMeta,
int image) |
void |
OMEXMLService.addMetadataOnly(OMEXMLMetadata omexmlMeta,
int image,
boolean resolve)
Insert a MetadataOnly element under the Image specified by 'index' in the
given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.addMetadataOnly(OMEXMLMetadata omexmlMeta,
int image,
boolean resolve) |
void |
OMEXMLService.addModuloAlong(OMEXMLMetadata omexmlMeta,
CoreMetadata core,
int image)
Adds ModuloAlong* annotations to the given OME-XML metadata object,
using the given CoreMetadata object to determine modulo dimensions.
|
void |
OMEXMLServiceImpl.addModuloAlong(OMEXMLMetadata meta,
CoreMetadata core,
int imageIdx) |
private void |
OMEXMLServiceImpl.createModulo(OMEXMLMetadata meta,
Modulo modulo,
StructuredAnnotations annotations,
Image image,
int imageIdx,
int annotationIndex,
int imageAnnotation)
Create a ModuloAlong* annotation corresponding to the given
Modulo . |
private Modulo |
OMEXMLServiceImpl.getModuloAlong(OMEXMLMetadata omexml,
String tag,
int image)
Create a
Modulo corresponding to the given ModuloAlong* tag. |
Modulo |
OMEXMLService.getModuloAlongC(OMEXMLMetadata omexmlMeta,
int image)
Retrieve the ModuloAlongC annotation in the given Image in the given
OME-XML metadata object.
|
Modulo |
OMEXMLServiceImpl.getModuloAlongC(OMEXMLMetadata omexml,
int image) |
Modulo |
OMEXMLService.getModuloAlongT(OMEXMLMetadata omexmlMeta,
int image)
Retrieve the ModuloAlongT annotation in the given Image in the given
OME-XML metadata object.
|
Modulo |
OMEXMLServiceImpl.getModuloAlongT(OMEXMLMetadata omexml,
int image) |
Modulo |
OMEXMLService.getModuloAlongZ(OMEXMLMetadata omexmlMeta,
int image)
Retrieve the ModuloAlongZ annotation in the given Image in the given
OME-XML metadata object.
|
Modulo |
OMEXMLServiceImpl.getModuloAlongZ(OMEXMLMetadata omexml,
int image) |
Hashtable |
OMEXMLService.getOriginalMetadata(OMEXMLMetadata omexmlMeta)
Parse any OriginalMetadata annotations from the given OME-XML metadata
object and store them in a Hashtable.
|
Hashtable |
OMEXMLServiceImpl.getOriginalMetadata(OMEXMLMetadata omexmlMeta) |
boolean |
OMEXMLService.isEqual(OMEXMLMetadata src1,
OMEXMLMetadata src2)
Determine whether or not two OMEXMLMetadata objects are equal.
|
boolean |
OMEXMLServiceImpl.isEqual(OMEXMLMetadata src1,
OMEXMLMetadata src2) |
void |
OMEXMLService.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
Hashtable<String,Object> metadata)
Adds the key/value pairs in the specified Hashtable as new
OriginalMetadata annotations in the given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
Hashtable<String,Object> metadata) |
void |
OMEXMLService.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
String key,
String value)
Adds the specified key/value pair as a new OriginalMetadata node
to the given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
String key,
String value) |
void |
OMEXMLService.removeBinData(OMEXMLMetadata omexmlMeta)
Remove all of the BinData elements from the given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.removeBinData(OMEXMLMetadata omexmlMeta) |
void |
OMEXMLService.removeChannels(OMEXMLMetadata omexmlMeta,
int image,
int sizeC)
Remove all but the first sizeC valid Channel elements from the given
OME-XML metadata object.
|
void |
OMEXMLServiceImpl.removeChannels(OMEXMLMetadata omexmlMeta,
int image,
int sizeC) |
void |
OMEXMLService.removeTiffData(OMEXMLMetadata omexmlMeta)
Remove all of the TiffData elements from the given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.removeTiffData(OMEXMLMetadata omexmlMeta) |
Copyright © 2016 Open Microscopy Environment