ome.formats.importer

Class ImportContainer

java.lang.Object

ome.formats.importer.ImportContainer

public class ImportContainer
extends Object

Constructor Summary

Constructors

Constructor and Description
ImportContainer(File file, omero.model.IObject target, Double[] userPixels, String reader, String[] usedFiles, Boolean isSPW)
ImportContainer(ImportConfig config, File file, omero.model.IObject target, Double[] userPixels, String reader, String[] usedFiles, Boolean isSPW)

Method Summary

Modifier and Type	Method and Description
void	fillData(ImportConfig config, omero.grid.ImportSettings settings, omero.model.Fileset fs, ClientFilePathTransformer sanitizer)
void	fillData(ImportConfig config, omero.grid.ImportSettings settings, omero.model.Fileset fs, ClientFilePathTransformer sanitizer, FileTransfer transfer)
void	fillData(omero.grid.ImportSettings settings, omero.model.Fileset fs, ClientFilePathTransformer sanitizer)
void	fillData(omero.grid.ImportSettings settings, omero.model.Fileset fs, ClientFilePathTransformer sanitizer, FileTransfer transfer)
String	getChecksumAlgorithm()
List<omero.model.Annotation>	getCustomAnnotationList() The list of custom, user specified, annotations to link to all images represented by this container.
boolean	getDoThumbnails() Retrieves whether or not we are performing thumbnail creation upon import completion.
File	getFile()
Boolean	getIsSPW() Return true if this import container contains a Screen/Plate/Well image group.
boolean	getNoStatsInfo() Retrieves whether or not we disabling StatsInfo population.
String	getReader() Return the reader class name used for reading the contents of this import container.
omero.model.IObject	getTarget()
String[]	getUsedFiles() Return a list of file names that belong to this import container.
long	getUsedFilesTotalSize() Returns the total size in bytes (based on File.length()) of all files in this import container.
Double[]	getUserPixels()
String	getUserSpecifiedDescription() Retrieves the current custom image/plate description string.
String	getUserSpecifiedName() Retrieves the current custom image/plate name string.
void	setChecksumAlgorithm(String ca)
void	setCustomAnnotationList(List<omero.model.Annotation> v) Sets the list of custom, user specified, annotations to link to all images represented by this container.
void	setDoThumbnails(boolean v) Sets whether or not we are performing thumbnail creation upon import completion.
void	setIsSPW(Boolean isSPW) Set true if the import container is filled in with a Screen/Plate/Well image structure.
void	setNoStatsInfo(boolean v) Sets whether or not we disabling StatsInfo population.
void	setReader(String reader) Sets the reader class name used for reading the contents of this import container.
void	setTarget(omero.model.IObject obj)
void	setUsedFiles(String[] usedFiles) Set the list of image file names that belong to this import container.
void	setUserPixels(Double[] userPixels)
void	setUserSpecifiedDescription(String v) Sets the custom image/plate description for import.
void	setUserSpecifiedName(String v) Sets the custom image/plate name for import.
void	updateUsedFilesTotalSize()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImportContainer

public ImportContainer(File file,
                       omero.model.IObject target,
                       Double[] userPixels,
                       String reader,
                       String[] usedFiles,
                       Boolean isSPW)

ImportContainer

public ImportContainer(ImportConfig config,
                       File file,
                       omero.model.IObject target,
                       Double[] userPixels,
                       String reader,
                       String[] usedFiles,
                       Boolean isSPW)

Method Detail

getDoThumbnails

public boolean getDoThumbnails()

Retrieves whether or not we are performing thumbnail creation upon import completion.

Returns:

true if we are to perform thumbnail creation and false otherwise.

Since:

OMERO Beta 4.3.0.

setDoThumbnails

public void setDoThumbnails(boolean v)

Sets whether or not we are performing thumbnail creation upon import completion.

Parameters:

v - true if we are to perform thumbnail creation and false otherwise.

Since:

OMERO Beta 4.3.0.

getNoStatsInfo

public boolean getNoStatsInfo()

Retrieves whether or not we disabling StatsInfo population.

Returns:

true if we are to disable StatsInfo population. false otherwise.

Since:

OMERO 5.1.

setNoStatsInfo

public void setNoStatsInfo(boolean v)

Sets whether or not we disabling StatsInfo population.

Parameters:

v - true if we are to disable StatsInfo population. false otherwise.

Since:

OMERO 5.1.

getUserSpecifiedName

public String getUserSpecifiedName()

Retrieves the current custom image/plate name string.

Returns:

As above. null if it has not been set.

setUserSpecifiedName

public void setUserSpecifiedName(String v)

Sets the custom image/plate name for import. If this value is left null, the image/plate name supplied by Bio-Formats will be used.

Parameters:

v - A custom image/plate name to use for all entities represented by this container.

getUserSpecifiedDescription

public String getUserSpecifiedDescription()

Retrieves the current custom image/plate description string.

Returns:

As above. null if it has not been set.

Since:

OMERO Beta 4.2.1.

setUserSpecifiedDescription

public void setUserSpecifiedDescription(String v)

Sets the custom image/plate description for import. If this value is left null, the image/plate description supplied by Bio-Formats will be used.

Parameters:

v - A custom image/plate description to use for all images represented by this container.

Since:

OMERO Beta 4.2.1.

getCustomAnnotationList

public List<omero.model.Annotation> getCustomAnnotationList()

The list of custom, user specified, annotations to link to all images represented by this container.

Returns:

See above.

Since:

OMERO Beta 4.2.1.

setCustomAnnotationList

public void setCustomAnnotationList(List<omero.model.Annotation> v)

Sets the list of custom, user specified, annotations to link to all images represented by this container.

Parameters:

v - The list of annotations to use.

Since:

OMERO Beta 4.2.1.

getReader

public String getReader()

Return the reader class name used for reading the contents of this import container.

Returns:

See above.

setReader

public void setReader(String reader)

Sets the reader class name used for reading the contents of this import container.

Parameters:

reader - Bio-Formats reader class name.

getUsedFiles

public String[] getUsedFiles()

Return a list of file names that belong to this import container.

Returns:

See above.

setUsedFiles

public void setUsedFiles(String[] usedFiles)

Set the list of image file names that belong to this import container.

Parameters:

usedFiles -

getUsedFilesTotalSize

public long getUsedFilesTotalSize()

Returns the total size in bytes (based on File.length()) of all files in this import container.

Returns:

See above.

getIsSPW

public Boolean getIsSPW()

Return true if this import container contains a Screen/Plate/Well image group. False otherwise.

Returns:

See above.

setIsSPW

public void setIsSPW(Boolean isSPW)

Set true if the import container is filled in with a Screen/Plate/Well image structure. False otherwise.

Parameters:

isSPW - True if container contains S/P/W, false otherwise.

getFile

public File getFile()

Returns:

the File

getTarget

public omero.model.IObject getTarget()

setTarget

public void setTarget(omero.model.IObject obj)

getUserPixels

public Double[] getUserPixels()

setUserPixels

public void setUserPixels(Double[] userPixels)

getChecksumAlgorithm

public String getChecksumAlgorithm()

setChecksumAlgorithm

public void setChecksumAlgorithm(String ca)

fillData

public void fillData(omero.grid.ImportSettings settings,
                     omero.model.Fileset fs,
                     ClientFilePathTransformer sanitizer)
              throws IOException

Throws:

IOException

fillData

public void fillData(omero.grid.ImportSettings settings,
                     omero.model.Fileset fs,
                     ClientFilePathTransformer sanitizer,
                     FileTransfer transfer)
              throws IOException

Throws:

IOException

fillData

public void fillData(ImportConfig config,
                     omero.grid.ImportSettings settings,
                     omero.model.Fileset fs,
                     ClientFilePathTransformer sanitizer)
              throws IOException

Throws:

IOException

fillData

public void fillData(ImportConfig config,
                     omero.grid.ImportSettings settings,
                     omero.model.Fileset fs,
                     ClientFilePathTransformer sanitizer,
                     FileTransfer transfer)
              throws IOException

Throws:

IOException

updateUsedFilesTotalSize

public void updateUsedFilesTotalSize()