Uses of Interface
ome.model.IObject

Packages that use IObject

Package	Description
ome.api	Contains the central verbs of the Omero System.
ome.api.local	Non-client service API for OMERO This includes interfaces for the local administration of the OMERO server.
ome.formats
ome.logic	The central repository of implementations which will be accessible through this server.
ome.model	Central interfaces in the Omero object model.
ome.model.acquisition
ome.model.annotations
ome.model.containers
ome.model.core
ome.model.display
ome.model.enums
ome.model.experiment
ome.model.fs
ome.model.internal	Contains non-code-generated model objects.
ome.model.jobs
ome.model.meta
ome.model.roi
ome.model.screen
ome.model.stats
ome.security	JBoss and OMERO security handling This includes classes that provide security for the execution and usage of the OMERO server on a JBoss platform.
ome.security.auth
ome.security.basic	Basic OMERO security contextual classes Basic classes that provide security context objects necessary to secure the implementation of the OMERO server on a JBoss platform.
ome.security.policy	Extensible service and security policies which can influence whether a user, group, or other agent can perform a certain action.
ome.security.sharing
ome.services	Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component.
ome.services.blitz.measurements
ome.services.blitz.repo
ome.services.delete	Implementations of the ome.api.IDelete service.
ome.services.eventlogs
ome.services.fulltext	All necessary classes for background indexing of metadata and attached binary files.
ome.services.graphs	Server classes for handling complicated graphs of model objects.
ome.services.mail	General mail services.
ome.services.messages	Message implementations used throughout the server for internal communication.
ome.services.search	Internal search implementation classes.
ome.services.sessions
ome.services.sessions.events
ome.services.sharing	ome.api.IShare support infrastructure.
ome.tools	OMERO Server Utility and Spring/Hibernate Tools Classes/Interfaces that implement File, Hibernate, Spring, Annotation, Hierarchy, etc. method mechanics for the OMERO server Related Documentation For more information, please see: TODO
ome.tools.hibernate	Hibernate specific tools for the OMERO Server Classes/Interfaces that implement Hibernate method mechanics for the OMERO server Related Documentation For more information, please see: TODO
ome.util	Utilities for all of OMERO.
omero.cmd.graphs
omero.util

Uses of IObject in ome.api

Methods in ome.api with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> void	IShare.addObject(long shareId, T object) Adds new item to share.
<T extends IObject> void	IShare.addObjects(long shareId, T... objects) Adds new items to share.
<T extends IObject> Map<Boolean,List<Long>>	IRenderingSettings.applySettingsToSet(long from, Class<T> type, Set<Long> nodeIds) Applies rendering settings to one or many containers.
<T extends IObject> T	IContainer.createDataObject(T object, Parameters options) Creates the specified data object.
<T extends IObject> long	IShare.createShare(String description, Timestamp expiration, List<T> items, List<Experimenter> exps, List<String> guests, boolean enabled) Creates share with all related: items, members, and guests.
<T extends IObject> T	IQuery.find(Class<T> klass, long id) lookup an entity by class and id.
<T extends IObject> List<T>	IQuery.findAll(Class<T> klass, Filter filter) lookup all entities that belong to this class and match filter.
<T extends IObject> List<T>	IQuery.findAllByExample(T example, Filter filter) search based on provided example entity.
<T extends IObject> List<T>	IQuery.findAllByFullText(Class<T> type, String query, Parameters parameters) executes a full text search based on Lucene.
<T extends IObject> List<T>	IQuery.findAllByQuery(String queryName, Parameters parameters) executes the stored query with the given name.
<T extends IObject> List<T>	IQuery.findAllByString(Class<T> klass, String field, String stringValue, boolean caseSensitive, Filter filter) search a given field matching against a String.
<T extends IObject> T	IQuery.findByExample(T example) search based on provided example entity.
<T extends IObject> T	IQuery.findByQuery(String queryName, Parameters parameters) executes the stored query with the given name.
<T extends IObject> T	IQuery.findByString(Class<T> klass, String field, String value) search a given field matching against a String.
<T extends IObject> Set<IObject>	IContainer.findContainerHierarchies(Class<T> rootNodeType, Set<Long> imagesIds, Parameters options) Retrieves hierarchy trees in various hierarchies that contain the specified Images.
<T extends IObject> T	IQuery.get(Class<T> klass, long id) lookup an entity by class and id.
<T extends IObject> List<T>	IPixels.getAllEnumerations(Class<T> klass) Retrieves the exhaustive list of enumerations for a given enumeration class.
<T extends IObject> Map<Class<T>,List<Long>>	IShare.getContentMap(long shareId) Returns the contents of the share keyed by type.
<T extends IObject> List<T>	IShare.getContents(long shareId) Looks up all items belong to the share.
<T extends IObject> List<T>	IShare.getContentSubList(long shareId, int start, int finish) Returns a range of items from the share.
<T extends IObject> T	IPixels.getEnumeration(Class<T> klass, String value) Retrieves a particular enumeration for a given enumeration class.
<T extends IObject> Set<Image>	IContainer.getImages(Class<T> rootNodeType, Set<Long> rootNodeIds, Parameters options) Retrieve a user's (or all users') images within any given container.
<T extends IObject,A extends Annotation> Map<Long,Set<A>>	IMetadata.loadAnnotations(Class<T> nodeType, Set<Long> rootNodeIds, Set<String> annotationType, Set<Long> annotatorIds, Parameters options) Loads all the annotations of given types, that have been attached to the specified rootNodes for the specified annotatorIds.
<T extends IObject> Set<IObject>	IContainer.loadContainerHierarchy(Class<T> rootNodeType, Set<Long> rootNodeIds, Parameters options) Retrieves hierarchy trees rooted by a given node (unless orphan is specified -- See below) This method also retrieves the Experimenters linked to the objects in the tree.
<T extends IObject> void	Search.onlyType(Class<T> klass) Restricts the search to a single type.
<T extends IObject> void	Search.onlyTypes(Class<T>... classes) Restricts searches to a set of types.
<T extends IObject> T	IQuery.refresh(T iObject) refreshes an entire IObject graph, recursive loading all data for the managed instances in the graph from the database.
<T extends IObject> void	IShare.removeObject(long shareId, T object) Removes existing object from the share.
<T extends IObject> void	IShare.removeObjects(long shareId, T... objects) Remove existing items from the share.
<T extends IObject> Set<Long>	IRenderingSettings.resetDefaultsByOwnerInSet(Class<T> type, Set<Long> nodeIds) Resets the rendering settings of a given group of containers based on the owner's (essentially a copy).
<T extends IObject> Set<Long>	IRenderingSettings.resetDefaultsInSet(Class<T> type, Set<Long> nodeIds) Resets a rendering settings back to one or many containers that are specified by the rendering engine intelligent pretty good image (PG) logic.
<T extends IObject> Set<Long>	IRenderingSettings.resetMinMaxInSet(Class<T> type, Set<Long> nodeIds) Resets a the channel windows for one or many containers back to their global minimum and global maximum for the channel.
<T extends IObject> List<T>	Search.results() Returns up to batch size number of results along with the related query metadata.
<T extends IObject> T	IUpdate.saveAndReturnObject(T graph)
<T extends IObject> Set<Long>	IRenderingSettings.setOriginalSettingsInSet(Class<T> type, Set<Long> nodeIds) Resets a rendering settings back to channel global minimum and maximum for the specified containers.
<T extends IObject> T	IContainer.updateDataObject(T dataObject, Parameters options) Updates a data object.

Methods in ome.api that return IObject

Modifier and Type	Method and Description
IObject[]	IContainer.createDataObjects(IObject[] dataObjects, Parameters options) convenience method to save network calls.
IObject	Search.next() Returns the next entity from the current query.
IObject[]	IUpdate.saveAndReturnArray(IObject[] graph)
IObject[]	IContainer.updateDataObjects(IObject[] dataObjects, Parameters options) convenience method to save network calls.

Methods in ome.api that return types with arguments of type IObject

Modifier and Type	Method and Description
List<IObject>	IDelete.checkImageDelete(long id, boolean force) Returns all entities which would prevent the given Image id from being deleted.
<T extends IObject> Set<IObject>	IContainer.findContainerHierarchies(Class<T> rootNodeType, Set<Long> imagesIds, Parameters options) Retrieves hierarchy trees in various hierarchies that contain the specified Images.
Set<IObject>	IAnalysis.getAllForImage(long imageId)
Set<IObject>	IMetadata.loadAnnotationsUsedNotOwned(Class annotationType, long userID) Loads the annotations of a given type used by the specified user but not owned by the user.
<T extends IObject> Set<IObject>	IContainer.loadContainerHierarchy(Class<T> rootNodeType, Set<Long> rootNodeIds, Parameters options) Retrieves hierarchy trees rooted by a given node (unless orphan is specified -- See below) This method also retrieves the Experimenters linked to the objects in the tree.
Map<Long,Set<IObject>>	IMetadata.loadLogFiles(Class<? extends IObject> rootNodeType, Set<Long> ids) Find the original file IDs for the import logs corresponding to the given Image or Fileset IDs.
Map<Long,Set<IObject>>	IMetadata.loadTagContent(Set<Long> tagIds, Parameters options) Loads the Tag Set if the id is specified otherwise loads all the Tag Set.
Set<IObject>	IMetadata.loadTagSets(Parameters options) Loads all the tag Sets.
List<IObject>	IDelete.previewImageDelete(long id, boolean force) Returns all entities which would be deleted by a call to IDelete.deleteImage(long, boolean).
List<IObject>	IPixels.retrieveAllRndSettings(long pixId, long userId) Retrieves all the rendering settings for a given pixels set and the passed user with the following objects pre-linked: renderingDef.quantization renderingDef.model renderingDef.waveRendering renderingDef.waveRendering.color renderingDef.waveRendering.family renderingDef.spatialDomainEnhancement

Methods in ome.api with parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> void	IShare.addObjects(long shareId, T... objects) Adds new items to share.
boolean	IAdmin.canUpdate(IObject obj) Returns true if the currently logged in user can modify the given IObject.
void	IAdmin.changeGroup(IObject iObject, String groupName) call details.setGroup() on this instance.
void	IAdmin.changeOwner(IObject iObject, String omeName) call details.setOwner() on this instance.
void	IAdmin.changePermissions(IObject iObject, Permissions perms) call defaults.setPermissions() on this instance.
IObject[]	IContainer.createDataObjects(IObject[] dataObjects, Parameters options) convenience method to save network calls.
void	IUpdate.deleteObject(IObject row) Deletes a single entity.
void	IUpdate.indexObject(IObject row) Initiates full-text indexing for the given object.
void	IAdmin.moveToCommonSpace(IObject... iObjects) Moves the given objects into the "user" group to make them visible and linkable from all security contexts.
<T extends IObject> void	IShare.removeObjects(long shareId, T... objects) Remove existing items from the share.
Collection	IContainer.retrieveCollection(IObject dataObject, String collectionName, Parameters options) Retrieves a collection with all members initialized ("loaded").
IObject[]	IUpdate.saveAndReturnArray(IObject[] graph)
List<Long>	IUpdate.saveAndReturnIds(IObject[] objects) Logic differs from other methods.
void	IUpdate.saveArray(IObject[] graph)
void	IUpdate.saveObject(IObject graph)
IObject[]	IContainer.updateDataObjects(IObject[] dataObjects, Parameters options) convenience method to save network calls.

Method parameters in ome.api with type arguments of type IObject

Modifier and Type	Method and Description
Map<Long,Map<Boolean,List<Long>>>	IContainer.getImagesBySplitFilesets(Map<Class<? extends IObject>,List<Long>> included, Parameters options) Given a list of IDs of certain entity types, calculates which filesets are split such that a non-empty proper subset of their images are referenced, directly or indirectly, as being included.
Map<Long,Set<IObject>>	IMetadata.loadLogFiles(Class<? extends IObject> rootNodeType, Set<Long> ids) Find the original file IDs for the import logs corresponding to the given Image or Fileset IDs.
void	IUpdate.saveCollection(Collection<IObject> graph)

Uses of IObject in ome.api.local

Methods in ome.api.local with parameters of type IObject

Modifier and Type	Method and Description
boolean	LocalAdmin.canAnnotate(IObject obj) Companion to IAdmin.canUpdate(IObject) but not yet remotely accessible.
void	LocalAdmin.internalMoveToCommonSpace(IObject obj) Unconditionally move an object into the user group (usually id=1).

Method parameters in ome.api.local with type arguments of type IObject

Modifier and Type	Method and Description
Map<String,Long>	LocalAdmin.getLockingIds(Class<IObject> klass, long id, Long groupId) Returns a map from Class (as string) to a count for all entities which point to the given IObject.

Uses of IObject in ome.formats

Methods in ome.formats that return IObject

Modifier and Type	Method and Description
IObject	OMEROMetadataStore.getObjectByLSID(LSID lsid) Retrieves an object from the internal object graph by LSID.

Methods in ome.formats with parameters of type IObject

Modifier and Type	Method and Description
void	OMEROMetadataStore.updateObject(String lsid, IObject sourceObject, Map<String,Integer> indexes) Updates a given model object in our object graph.

Uses of IObject in ome.logic

Methods in ome.logic with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> Map<Boolean,List<Long>>	RenderingSettingsImpl.applySettingsToSet(long from, Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
<T extends IObject> List<T>	QueryImpl.findAll(Class<T> klass, Filter filter)
<T extends IObject> List<T>	QueryImpl.findAllByExample(T example, Filter filter)
<T extends IObject> List<T>	QueryImpl.findAllByFullText(Class<T> type, String query, Parameters params)
<T extends IObject> List<T>	QueryImpl.findAllByQuery(String queryName, Parameters params)
<T extends IObject> List<T>	QueryImpl.findAllByString(Class<T> klass, String fieldName, String value, boolean caseSensitive, Filter filter)
<T extends IObject> T	QueryImpl.findByExample(T example)
<T extends IObject> T	QueryImpl.findByQuery(String queryName, Parameters params)
<T extends IObject> T	QueryImpl.findByString(Class<T> klass, String fieldName, String value)
<T extends IObject> List<T>	PixelsImpl.getAllEnumerations(Class<T> klass)
<T extends IObject> List<Class<T>>	TypesImpl.getContainerTypes()
<T extends IObject> T	PixelsImpl.getEnumeration(Class<T> klass, String value)
<T extends IObject> List<Class<T>>	TypesImpl.getImportTypes()
<T extends IObject> List<Class<T>>	TypesImpl.getPojoTypes()
<T extends IObject> List<Class<T>>	TypesImpl.getResultTypes()
<T extends IObject,A extends Annotation> Map<Long,Set<A>>	MetadataImpl.loadAnnotations(Class<T> rootNodeType, Set<Long> rootNodeIds, Set<String> annotationTypes, Set<Long> annotatorIds, Parameters options)
<T extends IObject> Permissions	TypesImpl.permissions(Class<T> k)
<T extends IObject> T	QueryImpl.refresh(T iObject)
<T extends IObject> Set<Long>	RenderingSettingsImpl.resetDefaultsByOwnerInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
<T extends IObject> Set<Long>	RenderingSettingsImpl.resetDefaultsInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
<T extends IObject> Set<Long>	RenderingSettingsImpl.resetMinMaxInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.
<T extends IObject> Set<Long>	RenderingSettingsImpl.setOriginalSettingsInSet(Class<T> klass, Set<Long> nodeIds) Implemented as specified by the IRenderingSettings I/F.

Methods in ome.logic that return IObject

Modifier and Type	Method and Description
IObject	PojosImpl.createDataObject(IObject arg0, Parameters arg1)
IObject[]	PojosImpl.createDataObjects(IObject[] arg0, Parameters arg1)
IObject	QueryImpl.find(Class klass, long id)
IObject	QueryImpl.get(Class klass, long id)
protected IObject	UpdateImpl.internalMerge(IObject obj, UpdateFilter filter, org.hibernate.Session session) Note if we use anything other than merge here, functionality from MergeEventListener needs to be moved to UpdateFilter or to another event listener.
IObject[]	UpdateImpl.saveAndReturnArray(IObject[] graph)
IObject	UpdateImpl.saveAndReturnObject(IObject graph)
IObject	PojosImpl.updateDataObject(IObject arg0, Parameters arg1)
IObject[]	PojosImpl.updateDataObjects(IObject[] arg0, Parameters arg1)

Methods in ome.logic that return types with arguments of type IObject

Modifier and Type	Method and Description
Set<IObject>	MetadataImpl.loadAnnotationsUsedNotOwned(Class annotationType, long userID)
Map<Long,Set<IObject>>	MetadataImpl.loadLogFiles(Class<? extends IObject> rootNodeType, Set<Long> ids)
Map<Long,Set<IObject>>	MetadataImpl.loadTagContent(Set<Long> tagIds, Parameters options)
Set<IObject>	MetadataImpl.loadTagSets(Parameters options)
List<IObject>	PixelsImpl.retrieveAllRndSettings(long pixId, long userId)

Methods in ome.logic with parameters of type IObject

Modifier and Type	Method and Description
protected void	AdminImpl.assertManaged(IObject o)
boolean	AdminImpl.canAnnotate(IObject obj)
boolean	AdminImpl.canUpdate(IObject obj)
void	AdminImpl.changeGroup(IObject iObject, String groupName)
void	AdminImpl.changeOwner(IObject iObject, String omeName)
void	AdminImpl.changePermissions(IObject iObject, Permissions perms) the implementation of this method is somewhat tricky in that Permissions changes must be allowed even when other updates are not.
IObject	PojosImpl.createDataObject(IObject arg0, Parameters arg1)
IObject[]	PojosImpl.createDataObjects(IObject[] arg0, Parameters arg1)
void	UpdateImpl.deleteObject(IObject row)
Map<String,Long>	AdminImpl.getLockingIds(IObject object)
void	UpdateImpl.indexObject(IObject row)
protected void	UpdateImpl.internalDelete(IObject obj, UpdateFilter filter, org.hibernate.Session session)
protected IObject	UpdateImpl.internalMerge(IObject obj, UpdateFilter filter, org.hibernate.Session session) Note if we use anything other than merge here, functionality from MergeEventListener needs to be moved to UpdateFilter or to another event listener.
void	AdminImpl.internalMoveToCommonSpace(IObject obj) Helpers which unconditionally moves the object to the common space.
protected Long	UpdateImpl.internalSave(IObject obj, ReloadFilter filter, org.hibernate.Session session) Note if we use anything other than merge here, functionality from MergeEventListener needs to be moved to UpdateFilter or to another event listener.
void	AdminImpl.moveToCommonSpace(IObject... iObjects)
Collection	PojosImpl.retrieveCollection(IObject arg0, String arg1, Parameters arg2)
IObject[]	UpdateImpl.saveAndReturnArray(IObject[] graph)
List<Long>	UpdateImpl.saveAndReturnIds(IObject[] graph)
IObject	UpdateImpl.saveAndReturnObject(IObject graph)
void	UpdateImpl.saveArray(IObject[] graph)
void	UpdateImpl.saveObject(IObject graph)
IObject	PojosImpl.updateDataObject(IObject arg0, Parameters arg1)
IObject[]	PojosImpl.updateDataObjects(IObject[] arg0, Parameters arg1)

Method parameters in ome.logic with type arguments of type IObject

Modifier and Type	Method and Description
Map<Long,Map<Boolean,List<Long>>>	PojosImpl.getImagesBySplitFilesets(Map<Class<? extends IObject>,List<Long>> included, Parameters options)
Map<String,Long>	AdminImpl.getLockingIds(Class<IObject> type, long id, Long groupId)
Map<Long,Set<IObject>>	MetadataImpl.loadLogFiles(Class<? extends IObject> rootNodeType, Set<Long> ids)

Uses of IObject in ome.model

Subinterfaces of IObject in ome.model

Modifier and Type	Interface and Description
interface	IAnnotated
interface	IAnnotationLink extension of ILink for marking links whose child field is an Annotation.
interface	IEnum interface for all domain enumarations.
interface	IGlobal marker interface for all global types, which have no IDetails fields other than permissions.
interface	ILink extension of IObject for building object hierarchies.
interface	IMutable interface for all mutable domain objects.

Methods in ome.model that return IObject

Modifier and Type	Method and Description
IObject	ILink.getChild()
IObject	ILink.getParent()

Methods in ome.model with parameters of type IObject

Modifier and Type	Method and Description
void	ILink.setChild(IObject child)
void	ILink.setParent(IObject parent)

Uses of IObject in ome.model.acquisition

Classes in ome.model.acquisition that implement IObject

Modifier and Type	Class and Description
class	Arc
class	Detector These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	DetectorSettings These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Dichroic These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Filament
class	Filter These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	FilterSet These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	FilterSetEmissionFilterLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	FilterSetExcitationFilterLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	GenericExcitationSource
class	ImagingEnvironment These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Instrument These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Laser
class	LightEmittingDiode
class	LightPath These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	LightPathEmissionFilterLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	LightPathExcitationFilterLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	LightSettings These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	LightSource These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Microscope These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Objective These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ObjectiveSettings These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	OTF These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	StageLabel These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	TransmittanceRange These filter definitions are used by the security system to eliminate non-readable objects from queries.

Fields in ome.model.acquisition declared as IObject

Modifier and Type	Field and Description
protected IObject	FilterSetEmissionFilterLink.child
protected IObject	FilterSetExcitationFilterLink.child
protected IObject	LightPathEmissionFilterLink.child
protected IObject	LightPathExcitationFilterLink.child
protected IObject	FilterSetEmissionFilterLink.parent
protected IObject	FilterSetExcitationFilterLink.parent
protected IObject	LightPathEmissionFilterLink.parent
protected IObject	LightPathExcitationFilterLink.parent

Methods in ome.model.acquisition that return IObject

Modifier and Type	Method and Description
IObject	FilterSetEmissionFilterLink.getChild() Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.child (ome.model.acquisition.Filter)
IObject	FilterSetExcitationFilterLink.getChild() Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.child (ome.model.acquisition.Filter)
IObject	LightPathEmissionFilterLink.getChild() Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.child (ome.model.acquisition.Filter)
IObject	LightPathExcitationFilterLink.getChild() Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.child (ome.model.acquisition.Filter)
IObject	FilterSetEmissionFilterLink.getParent() Many-to-one field ome.model.acquisition.FilterSetEmissionFilterLink.parent (ome.model.acquisition.FilterSet)
IObject	FilterSetExcitationFilterLink.getParent() Many-to-one field ome.model.acquisition.FilterSetExcitationFilterLink.parent (ome.model.acquisition.FilterSet)
IObject	LightPathEmissionFilterLink.getParent() Many-to-one field ome.model.acquisition.LightPathEmissionFilterLink.parent (ome.model.acquisition.LightPath)
IObject	LightPathExcitationFilterLink.getParent() Many-to-one field ome.model.acquisition.LightPathExcitationFilterLink.parent (ome.model.acquisition.LightPath)

Methods in ome.model.acquisition with parameters of type IObject

Modifier and Type	Method and Description
void	FilterSetEmissionFilterLink.setChild(IObject child)
void	FilterSetExcitationFilterLink.setChild(IObject child)
void	LightPathEmissionFilterLink.setChild(IObject child)
void	LightPathExcitationFilterLink.setChild(IObject child)
void	FilterSetEmissionFilterLink.setParent(IObject parent)
void	FilterSetExcitationFilterLink.setParent(IObject parent)
void	LightPathEmissionFilterLink.setParent(IObject parent)
void	LightPathExcitationFilterLink.setParent(IObject parent)

Constructors in ome.model.acquisition with parameters of type IObject

Constructor and Description
FilterSetEmissionFilterLink(IObject _parent, IObject _child)
FilterSetExcitationFilterLink(IObject _parent, IObject _child)
LightPathEmissionFilterLink(IObject _parent, IObject _child)
LightPathExcitationFilterLink(IObject _parent, IObject _child)

Uses of IObject in ome.model.annotations

Classes in ome.model.annotations that implement IObject

Modifier and Type	Class and Description
class	Annotation These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	AnnotationAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	BasicAnnotation
class	BooleanAnnotation
class	ChannelAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	CommentAnnotation
class	DatasetAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	DetectorAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	DichroicAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	DoubleAnnotation
class	ExperimenterAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ExperimenterGroupAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	FileAnnotation
class	FilesetAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	FilterAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ImageAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	InstrumentAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	LightPathAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	LightSourceAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ListAnnotation
class	LongAnnotation
class	MapAnnotation
class	NamespaceAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	NodeAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	NumericAnnotation
class	ObjectiveAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	OriginalFileAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	PlaneInfoAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	PlateAcquisitionAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	PlateAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ProjectAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ReagentAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	RoiAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ScreenAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	SessionAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ShapeAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	TagAnnotation
class	TermAnnotation
class	TextAnnotation
class	TimestampAnnotation
class	TypeAnnotation
class	WellAnnotationLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	XmlAnnotation

Fields in ome.model.annotations declared as IObject

Modifier and Type	Field and Description
protected IObject	AnnotationAnnotationLink.child
protected IObject	ChannelAnnotationLink.child
protected IObject	DatasetAnnotationLink.child
protected IObject	DetectorAnnotationLink.child
protected IObject	DichroicAnnotationLink.child
protected IObject	ExperimenterAnnotationLink.child
protected IObject	ExperimenterGroupAnnotationLink.child
protected IObject	FilesetAnnotationLink.child
protected IObject	FilterAnnotationLink.child
protected IObject	ImageAnnotationLink.child
protected IObject	InstrumentAnnotationLink.child
protected IObject	LightPathAnnotationLink.child
protected IObject	LightSourceAnnotationLink.child
protected IObject	NamespaceAnnotationLink.child
protected IObject	NodeAnnotationLink.child
protected IObject	ObjectiveAnnotationLink.child
protected IObject	OriginalFileAnnotationLink.child
protected IObject	PlaneInfoAnnotationLink.child
protected IObject	PlateAcquisitionAnnotationLink.child
protected IObject	PlateAnnotationLink.child
protected IObject	ProjectAnnotationLink.child
protected IObject	ReagentAnnotationLink.child
protected IObject	RoiAnnotationLink.child
protected IObject	ScreenAnnotationLink.child
protected IObject	SessionAnnotationLink.child
protected IObject	ShapeAnnotationLink.child
protected IObject	WellAnnotationLink.child
protected IObject	AnnotationAnnotationLink.parent
protected IObject	ChannelAnnotationLink.parent
protected IObject	DatasetAnnotationLink.parent
protected IObject	DetectorAnnotationLink.parent
protected IObject	DichroicAnnotationLink.parent
protected IObject	ExperimenterAnnotationLink.parent
protected IObject	ExperimenterGroupAnnotationLink.parent
protected IObject	FilesetAnnotationLink.parent
protected IObject	FilterAnnotationLink.parent
protected IObject	ImageAnnotationLink.parent
protected IObject	InstrumentAnnotationLink.parent
protected IObject	LightPathAnnotationLink.parent
protected IObject	LightSourceAnnotationLink.parent
protected IObject	NamespaceAnnotationLink.parent
protected IObject	NodeAnnotationLink.parent
protected IObject	ObjectiveAnnotationLink.parent
protected IObject	OriginalFileAnnotationLink.parent
protected IObject	PlaneInfoAnnotationLink.parent
protected IObject	PlateAcquisitionAnnotationLink.parent
protected IObject	PlateAnnotationLink.parent
protected IObject	ProjectAnnotationLink.parent
protected IObject	ReagentAnnotationLink.parent
protected IObject	RoiAnnotationLink.parent
protected IObject	ScreenAnnotationLink.parent
protected IObject	SessionAnnotationLink.parent
protected IObject	ShapeAnnotationLink.parent
protected IObject	WellAnnotationLink.parent

Methods in ome.model.annotations that return IObject

Modifier and Type	Method and Description
IObject	AnnotationAnnotationLink.getChild() Many-to-one field ome.model.annotations.AnnotationAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ChannelAnnotationLink.getChild() Many-to-one field ome.model.annotations.ChannelAnnotationLink.child (ome.model.annotations.Annotation)
IObject	DatasetAnnotationLink.getChild() Many-to-one field ome.model.annotations.DatasetAnnotationLink.child (ome.model.annotations.Annotation)
IObject	DetectorAnnotationLink.getChild() Many-to-one field ome.model.annotations.DetectorAnnotationLink.child (ome.model.annotations.Annotation)
IObject	DichroicAnnotationLink.getChild() Many-to-one field ome.model.annotations.DichroicAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ExperimenterAnnotationLink.getChild() Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ExperimenterGroupAnnotationLink.getChild() Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.child (ome.model.annotations.Annotation)
IObject	FilesetAnnotationLink.getChild() Many-to-one field ome.model.annotations.FilesetAnnotationLink.child (ome.model.annotations.Annotation)
IObject	FilterAnnotationLink.getChild() Many-to-one field ome.model.annotations.FilterAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ImageAnnotationLink.getChild() Many-to-one field ome.model.annotations.ImageAnnotationLink.child (ome.model.annotations.Annotation)
IObject	InstrumentAnnotationLink.getChild() Many-to-one field ome.model.annotations.InstrumentAnnotationLink.child (ome.model.annotations.Annotation)
IObject	LightPathAnnotationLink.getChild() Many-to-one field ome.model.annotations.LightPathAnnotationLink.child (ome.model.annotations.Annotation)
IObject	LightSourceAnnotationLink.getChild() Many-to-one field ome.model.annotations.LightSourceAnnotationLink.child (ome.model.annotations.Annotation)
IObject	NamespaceAnnotationLink.getChild() Many-to-one field ome.model.annotations.NamespaceAnnotationLink.child (ome.model.annotations.Annotation)
IObject	NodeAnnotationLink.getChild() Many-to-one field ome.model.annotations.NodeAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ObjectiveAnnotationLink.getChild() Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.child (ome.model.annotations.Annotation)
IObject	OriginalFileAnnotationLink.getChild() Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.child (ome.model.annotations.Annotation)
IObject	PlaneInfoAnnotationLink.getChild() Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.child (ome.model.annotations.Annotation)
IObject	PlateAcquisitionAnnotationLink.getChild() Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.child (ome.model.annotations.Annotation)
IObject	PlateAnnotationLink.getChild() Many-to-one field ome.model.annotations.PlateAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ProjectAnnotationLink.getChild() Many-to-one field ome.model.annotations.ProjectAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ReagentAnnotationLink.getChild() Many-to-one field ome.model.annotations.ReagentAnnotationLink.child (ome.model.annotations.Annotation)
IObject	RoiAnnotationLink.getChild() Many-to-one field ome.model.annotations.RoiAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ScreenAnnotationLink.getChild() Many-to-one field ome.model.annotations.ScreenAnnotationLink.child (ome.model.annotations.Annotation)
IObject	SessionAnnotationLink.getChild() Many-to-one field ome.model.annotations.SessionAnnotationLink.child (ome.model.annotations.Annotation)
IObject	ShapeAnnotationLink.getChild() Many-to-one field ome.model.annotations.ShapeAnnotationLink.child (ome.model.annotations.Annotation)
IObject	WellAnnotationLink.getChild() Many-to-one field ome.model.annotations.WellAnnotationLink.child (ome.model.annotations.Annotation)
IObject	AnnotationAnnotationLink.getParent() Many-to-one field ome.model.annotations.AnnotationAnnotationLink.parent (ome.model.annotations.Annotation)
IObject	ChannelAnnotationLink.getParent() Many-to-one field ome.model.annotations.ChannelAnnotationLink.parent (ome.model.core.Channel)
IObject	DatasetAnnotationLink.getParent() Many-to-one field ome.model.annotations.DatasetAnnotationLink.parent (ome.model.containers.Dataset)
IObject	DetectorAnnotationLink.getParent() Many-to-one field ome.model.annotations.DetectorAnnotationLink.parent (ome.model.acquisition.Detector)
IObject	DichroicAnnotationLink.getParent() Many-to-one field ome.model.annotations.DichroicAnnotationLink.parent (ome.model.acquisition.Dichroic)
IObject	ExperimenterAnnotationLink.getParent() Many-to-one field ome.model.annotations.ExperimenterAnnotationLink.parent (ome.model.meta.Experimenter)
IObject	ExperimenterGroupAnnotationLink.getParent() Many-to-one field ome.model.annotations.ExperimenterGroupAnnotationLink.parent (ome.model.meta.ExperimenterGroup)
IObject	FilesetAnnotationLink.getParent() Many-to-one field ome.model.annotations.FilesetAnnotationLink.parent (ome.model.fs.Fileset)
IObject	FilterAnnotationLink.getParent() Many-to-one field ome.model.annotations.FilterAnnotationLink.parent (ome.model.acquisition.Filter)
IObject	ImageAnnotationLink.getParent() Many-to-one field ome.model.annotations.ImageAnnotationLink.parent (ome.model.core.Image)
IObject	InstrumentAnnotationLink.getParent() Many-to-one field ome.model.annotations.InstrumentAnnotationLink.parent (ome.model.acquisition.Instrument)
IObject	LightPathAnnotationLink.getParent() Many-to-one field ome.model.annotations.LightPathAnnotationLink.parent (ome.model.acquisition.LightPath)
IObject	LightSourceAnnotationLink.getParent() Many-to-one field ome.model.annotations.LightSourceAnnotationLink.parent (ome.model.acquisition.LightSource)
IObject	NamespaceAnnotationLink.getParent() Many-to-one field ome.model.annotations.NamespaceAnnotationLink.parent (ome.model.meta.Namespace)
IObject	NodeAnnotationLink.getParent() Many-to-one field ome.model.annotations.NodeAnnotationLink.parent (ome.model.meta.Node)
IObject	ObjectiveAnnotationLink.getParent() Many-to-one field ome.model.annotations.ObjectiveAnnotationLink.parent (ome.model.acquisition.Objective)
IObject	OriginalFileAnnotationLink.getParent() Many-to-one field ome.model.annotations.OriginalFileAnnotationLink.parent (ome.model.core.OriginalFile)
IObject	PlaneInfoAnnotationLink.getParent() Many-to-one field ome.model.annotations.PlaneInfoAnnotationLink.parent (ome.model.core.PlaneInfo)
IObject	PlateAcquisitionAnnotationLink.getParent() Many-to-one field ome.model.annotations.PlateAcquisitionAnnotationLink.parent (ome.model.screen.PlateAcquisition)
IObject	PlateAnnotationLink.getParent() Many-to-one field ome.model.annotations.PlateAnnotationLink.parent (ome.model.screen.Plate)
IObject	ProjectAnnotationLink.getParent() Many-to-one field ome.model.annotations.ProjectAnnotationLink.parent (ome.model.containers.Project)
IObject	ReagentAnnotationLink.getParent() Many-to-one field ome.model.annotations.ReagentAnnotationLink.parent (ome.model.screen.Reagent)
IObject	RoiAnnotationLink.getParent() Many-to-one field ome.model.annotations.RoiAnnotationLink.parent (ome.model.roi.Roi)
IObject	ScreenAnnotationLink.getParent() Many-to-one field ome.model.annotations.ScreenAnnotationLink.parent (ome.model.screen.Screen)
IObject	SessionAnnotationLink.getParent() Many-to-one field ome.model.annotations.SessionAnnotationLink.parent (ome.model.meta.Session)
IObject	ShapeAnnotationLink.getParent() Many-to-one field ome.model.annotations.ShapeAnnotationLink.parent (ome.model.roi.Shape)
IObject	WellAnnotationLink.getParent() Many-to-one field ome.model.annotations.WellAnnotationLink.parent (ome.model.screen.Well)

Methods in ome.model.annotations with parameters of type IObject

Modifier and Type	Method and Description
void	AnnotationAnnotationLink.setChild(IObject child)
void	ChannelAnnotationLink.setChild(IObject child)
void	DatasetAnnotationLink.setChild(IObject child)
void	DetectorAnnotationLink.setChild(IObject child)
void	DichroicAnnotationLink.setChild(IObject child)
void	ExperimenterAnnotationLink.setChild(IObject child)
void	ExperimenterGroupAnnotationLink.setChild(IObject child)
void	FilesetAnnotationLink.setChild(IObject child)
void	FilterAnnotationLink.setChild(IObject child)
void	ImageAnnotationLink.setChild(IObject child)
void	InstrumentAnnotationLink.setChild(IObject child)
void	LightPathAnnotationLink.setChild(IObject child)
void	LightSourceAnnotationLink.setChild(IObject child)
void	NamespaceAnnotationLink.setChild(IObject child)
void	NodeAnnotationLink.setChild(IObject child)
void	ObjectiveAnnotationLink.setChild(IObject child)
void	OriginalFileAnnotationLink.setChild(IObject child)
void	PlaneInfoAnnotationLink.setChild(IObject child)
void	PlateAcquisitionAnnotationLink.setChild(IObject child)
void	PlateAnnotationLink.setChild(IObject child)
void	ProjectAnnotationLink.setChild(IObject child)
void	ReagentAnnotationLink.setChild(IObject child)
void	RoiAnnotationLink.setChild(IObject child)
void	ScreenAnnotationLink.setChild(IObject child)
void	SessionAnnotationLink.setChild(IObject child)
void	ShapeAnnotationLink.setChild(IObject child)
void	WellAnnotationLink.setChild(IObject child)
void	AnnotationAnnotationLink.setParent(IObject parent)
void	ChannelAnnotationLink.setParent(IObject parent)
void	DatasetAnnotationLink.setParent(IObject parent)
void	DetectorAnnotationLink.setParent(IObject parent)
void	DichroicAnnotationLink.setParent(IObject parent)
void	ExperimenterAnnotationLink.setParent(IObject parent)
void	ExperimenterGroupAnnotationLink.setParent(IObject parent)
void	FilesetAnnotationLink.setParent(IObject parent)
void	FilterAnnotationLink.setParent(IObject parent)
void	ImageAnnotationLink.setParent(IObject parent)
void	InstrumentAnnotationLink.setParent(IObject parent)
void	LightPathAnnotationLink.setParent(IObject parent)
void	LightSourceAnnotationLink.setParent(IObject parent)
void	NamespaceAnnotationLink.setParent(IObject parent)
void	NodeAnnotationLink.setParent(IObject parent)
void	ObjectiveAnnotationLink.setParent(IObject parent)
void	OriginalFileAnnotationLink.setParent(IObject parent)
void	PlaneInfoAnnotationLink.setParent(IObject parent)
void	PlateAcquisitionAnnotationLink.setParent(IObject parent)
void	PlateAnnotationLink.setParent(IObject parent)
void	ProjectAnnotationLink.setParent(IObject parent)
void	ReagentAnnotationLink.setParent(IObject parent)
void	RoiAnnotationLink.setParent(IObject parent)
void	ScreenAnnotationLink.setParent(IObject parent)
void	SessionAnnotationLink.setParent(IObject parent)
void	ShapeAnnotationLink.setParent(IObject parent)
void	WellAnnotationLink.setParent(IObject parent)

Constructors in ome.model.annotations with parameters of type IObject

Constructor and Description
AnnotationAnnotationLink(IObject _parent, IObject _child)
ChannelAnnotationLink(IObject _parent, IObject _child)
DatasetAnnotationLink(IObject _parent, IObject _child)
DetectorAnnotationLink(IObject _parent, IObject _child)
DichroicAnnotationLink(IObject _parent, IObject _child)
ExperimenterAnnotationLink(IObject _parent, IObject _child)
ExperimenterGroupAnnotationLink(IObject _parent, IObject _child)
FilesetAnnotationLink(IObject _parent, IObject _child)
FilterAnnotationLink(IObject _parent, IObject _child)
ImageAnnotationLink(IObject _parent, IObject _child)
InstrumentAnnotationLink(IObject _parent, IObject _child)
LightPathAnnotationLink(IObject _parent, IObject _child)
LightSourceAnnotationLink(IObject _parent, IObject _child)
NamespaceAnnotationLink(IObject _parent, IObject _child)
NodeAnnotationLink(IObject _parent, IObject _child)
ObjectiveAnnotationLink(IObject _parent, IObject _child)
OriginalFileAnnotationLink(IObject _parent, IObject _child)
PlaneInfoAnnotationLink(IObject _parent, IObject _child)
PlateAcquisitionAnnotationLink(IObject _parent, IObject _child)
PlateAnnotationLink(IObject _parent, IObject _child)
ProjectAnnotationLink(IObject _parent, IObject _child)
ReagentAnnotationLink(IObject _parent, IObject _child)
RoiAnnotationLink(IObject _parent, IObject _child)
ScreenAnnotationLink(IObject _parent, IObject _child)
SessionAnnotationLink(IObject _parent, IObject _child)
ShapeAnnotationLink(IObject _parent, IObject _child)
WellAnnotationLink(IObject _parent, IObject _child)

Uses of IObject in ome.model.containers

Classes in ome.model.containers that implement IObject

Modifier and Type	Class and Description
class	Dataset These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	DatasetImageLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Project These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ProjectDatasetLink These filter definitions are used by the security system to eliminate non-readable objects from queries.

Fields in ome.model.containers declared as IObject

Modifier and Type	Field and Description
protected IObject	DatasetImageLink.child
protected IObject	ProjectDatasetLink.child
protected IObject	DatasetImageLink.parent
protected IObject	ProjectDatasetLink.parent

Methods in ome.model.containers that return IObject

Modifier and Type	Method and Description
IObject	DatasetImageLink.getChild() Many-to-one field ome.model.containers.DatasetImageLink.child (ome.model.core.Image)
IObject	ProjectDatasetLink.getChild() Many-to-one field ome.model.containers.ProjectDatasetLink.child (ome.model.containers.Dataset)
IObject	DatasetImageLink.getParent() Many-to-one field ome.model.containers.DatasetImageLink.parent (ome.model.containers.Dataset)
IObject	ProjectDatasetLink.getParent() Many-to-one field ome.model.containers.ProjectDatasetLink.parent (ome.model.containers.Project)

Methods in ome.model.containers with parameters of type IObject

Modifier and Type	Method and Description
void	DatasetImageLink.setChild(IObject child)
void	ProjectDatasetLink.setChild(IObject child)
void	DatasetImageLink.setParent(IObject parent)
void	ProjectDatasetLink.setParent(IObject parent)

Constructors in ome.model.containers with parameters of type IObject

Constructor and Description
DatasetImageLink(IObject _parent, IObject _child)
ProjectDatasetLink(IObject _parent, IObject _child)

Uses of IObject in ome.model.core

Classes in ome.model.core that implement IObject

Modifier and Type	Class and Description
class	Channel These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Image These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	LogicalChannel These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	OriginalFile These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Pixels These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	PixelsOriginalFileMap These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	PlaneInfo These filter definitions are used by the security system to eliminate non-readable objects from queries.

Fields in ome.model.core declared as IObject

Modifier and Type	Field and Description
protected IObject	PixelsOriginalFileMap.child
protected IObject	PixelsOriginalFileMap.parent

Methods in ome.model.core that return IObject

Modifier and Type	Method and Description
IObject	PixelsOriginalFileMap.getChild() Many-to-one field ome.model.core.PixelsOriginalFileMap.child (ome.model.core.Pixels)
IObject	PixelsOriginalFileMap.getParent() Many-to-one field ome.model.core.PixelsOriginalFileMap.parent (ome.model.core.OriginalFile)

Methods in ome.model.core with parameters of type IObject

Modifier and Type	Method and Description
void	PixelsOriginalFileMap.setChild(IObject child)
void	PixelsOriginalFileMap.setParent(IObject parent)

Constructors in ome.model.core with parameters of type IObject

Constructor and Description
PixelsOriginalFileMap(IObject _parent, IObject _child)

Uses of IObject in ome.model.display

Classes in ome.model.display that implement IObject

Modifier and Type	Class and Description
class	ChannelBinding These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	CodomainMapContext These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ContrastStretchingContext
class	PlaneSlicingContext
class	QuantumDef These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	RenderingDef These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ReverseIntensityContext
class	Thumbnail These filter definitions are used by the security system to eliminate non-readable objects from queries.

Uses of IObject in ome.model.enums

Classes in ome.model.enums that implement IObject

Modifier and Type	Class and Description
class	AcquisitionMode
class	ArcType
class	Binning
class	ChecksumAlgorithm
class	ContrastMethod
class	Correction
class	DetectorType
class	DimensionOrder
class	EventType
class	ExperimentType
class	Family
class	FilamentType
class	FilterType
class	Format
class	Illumination
class	Immersion
class	LaserMedium
class	LaserType
class	Medium
class	MicrobeamManipulationType
class	MicroscopeType
class	PhotometricInterpretation
class	PixelsType
class	Pulse
class	RenderingModel

Uses of IObject in ome.model.experiment

Classes in ome.model.experiment that implement IObject

Modifier and Type	Class and Description
class	Experiment These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	MicrobeamManipulation These filter definitions are used by the security system to eliminate non-readable objects from queries.

Uses of IObject in ome.model.fs

Classes in ome.model.fs that implement IObject

Modifier and Type	Class and Description
class	Fileset These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	FilesetEntry These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	FilesetJobLink These filter definitions are used by the security system to eliminate non-readable objects from queries.

Fields in ome.model.fs declared as IObject

Modifier and Type	Field and Description
protected IObject	FilesetJobLink.child
protected IObject	FilesetJobLink.parent

Methods in ome.model.fs that return IObject

Modifier and Type	Method and Description
IObject	FilesetJobLink.getChild() Many-to-one field ome.model.fs.FilesetJobLink.child (ome.model.jobs.Job)
IObject	FilesetJobLink.getParent() Many-to-one field ome.model.fs.FilesetJobLink.parent (ome.model.fs.Fileset)

Methods in ome.model.fs with parameters of type IObject

Modifier and Type	Method and Description
void	FilesetJobLink.setChild(IObject child)
void	FilesetJobLink.setParent(IObject parent)

Constructors in ome.model.fs with parameters of type IObject

Constructor and Description
FilesetJobLink(IObject _parent, IObject _child)

Uses of IObject in ome.model.internal

Classes in ome.model.internal that implement IObject

Modifier and Type	Class and Description
class	Link These filter definitions are used by the security system to eliminate non-readable objects from queries.

Fields in ome.model.internal declared as IObject

Modifier and Type	Field and Description
protected IObject	Details._context

Methods in ome.model.internal that return IObject

Modifier and Type	Method and Description
IObject	Details.getContext() reference to the entity which this Details is contained in.
IObject	GraphHolder.getReplacement() a replacement is a managed entity instance which has the same primary key as this instance.

Methods in ome.model.internal with parameters of type IObject

Modifier and Type	Method and Description
void	Details.setContext(IObject myContext) set entity to which this Details belongs.
void	GraphHolder.setReplacement(IObject replacement) used mostly by ome.api.IUpdate.

Uses of IObject in ome.model.jobs

Classes in ome.model.jobs that implement IObject

Modifier and Type	Class and Description
class	ImportJob
class	IndexingJob
class	IntegrityCheckJob
class	Job These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	JobOriginalFileLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	JobStatus
class	MetadataImportJob
class	ParseJob
class	PixelDataJob
class	ScriptJob
class	ThumbnailGenerationJob
class	UploadJob

Fields in ome.model.jobs declared as IObject

Modifier and Type	Field and Description
protected IObject	JobOriginalFileLink.child
protected IObject	JobOriginalFileLink.parent

Methods in ome.model.jobs that return IObject

Modifier and Type	Method and Description
IObject	JobOriginalFileLink.getChild() Many-to-one field ome.model.jobs.JobOriginalFileLink.child (ome.model.core.OriginalFile)
IObject	JobOriginalFileLink.getParent() Many-to-one field ome.model.jobs.JobOriginalFileLink.parent (ome.model.jobs.Job)

Methods in ome.model.jobs with parameters of type IObject

Modifier and Type	Method and Description
void	JobOriginalFileLink.setChild(IObject child)
void	JobOriginalFileLink.setParent(IObject parent)

Constructors in ome.model.jobs with parameters of type IObject

Constructor and Description
JobOriginalFileLink(IObject _parent, IObject _child)

Uses of IObject in ome.model.meta

Classes in ome.model.meta that implement IObject

Modifier and Type	Class and Description
class	DBPatch
class	Event
class	EventLog
class	Experimenter
class	ExperimenterGroup
class	ExternalInfo These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	GroupExperimenterMap
class	Namespace
class	Node
class	Session
class	Share
class	ShareMember

Fields in ome.model.meta declared as IObject

Modifier and Type	Field and Description
protected IObject	GroupExperimenterMap.child
protected IObject	ShareMember.child
protected IObject	GroupExperimenterMap.parent
protected IObject	ShareMember.parent

Methods in ome.model.meta that return IObject

Modifier and Type	Method and Description
IObject	GroupExperimenterMap.getChild() Many-to-one field ome.model.meta.GroupExperimenterMap.child (ome.model.meta.Experimenter)
IObject	ShareMember.getChild() Many-to-one field ome.model.meta.ShareMember.child (ome.model.meta.Experimenter)
IObject	GroupExperimenterMap.getParent() Many-to-one field ome.model.meta.GroupExperimenterMap.parent (ome.model.meta.ExperimenterGroup)
IObject	ShareMember.getParent() Many-to-one field ome.model.meta.ShareMember.parent (ome.model.meta.Share)

Methods in ome.model.meta with parameters of type IObject

Modifier and Type	Method and Description
void	GroupExperimenterMap.setChild(IObject child)
void	ShareMember.setChild(IObject child)
void	GroupExperimenterMap.setParent(IObject parent)
void	ShareMember.setParent(IObject parent)

Constructors in ome.model.meta with parameters of type IObject

Constructor and Description
GroupExperimenterMap(IObject _parent, IObject _child, Boolean _owner)
ShareMember(IObject _parent, IObject _child)

Uses of IObject in ome.model.roi

Classes in ome.model.roi that implement IObject

Modifier and Type	Class and Description
class	Ellipse
class	Label
class	Line
class	Mask
class	Path
class	Point
class	Polygon
class	Polyline
class	Rectangle
class	Roi These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Shape These filter definitions are used by the security system to eliminate non-readable objects from queries.

Uses of IObject in ome.model.screen

Classes in ome.model.screen that implement IObject

Modifier and Type	Class and Description
class	Plate These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	PlateAcquisition These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Reagent These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Screen These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	ScreenPlateLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	Well These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	WellReagentLink These filter definitions are used by the security system to eliminate non-readable objects from queries.
class	WellSample These filter definitions are used by the security system to eliminate non-readable objects from queries.

Fields in ome.model.screen declared as IObject

Modifier and Type	Field and Description
protected IObject	ScreenPlateLink.child
protected IObject	WellReagentLink.child
protected IObject	ScreenPlateLink.parent
protected IObject	WellReagentLink.parent

Methods in ome.model.screen that return IObject

Modifier and Type	Method and Description
IObject	ScreenPlateLink.getChild() Many-to-one field ome.model.screen.ScreenPlateLink.child (ome.model.screen.Plate)
IObject	WellReagentLink.getChild() Many-to-one field ome.model.screen.WellReagentLink.child (ome.model.screen.Reagent)
IObject	ScreenPlateLink.getParent() Many-to-one field ome.model.screen.ScreenPlateLink.parent (ome.model.screen.Screen)
IObject	WellReagentLink.getParent() Many-to-one field ome.model.screen.WellReagentLink.parent (ome.model.screen.Well)

Methods in ome.model.screen with parameters of type IObject

Modifier and Type	Method and Description
void	ScreenPlateLink.setChild(IObject child)
void	WellReagentLink.setChild(IObject child)
void	ScreenPlateLink.setParent(IObject parent)
void	WellReagentLink.setParent(IObject parent)

Constructors in ome.model.screen with parameters of type IObject

Constructor and Description
ScreenPlateLink(IObject _parent, IObject _child)
WellReagentLink(IObject _parent, IObject _child)

Uses of IObject in ome.model.stats

Classes in ome.model.stats that implement IObject

Modifier and Type	Class and Description
class	StatsInfo These filter definitions are used by the security system to eliminate non-readable objects from queries.

Uses of IObject in ome.security

Methods in ome.security with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> T	SecuritySystem.doAction(SecureAction action, T... objs)
<T extends IObject> T	SecuritySystemHolder.doAction(SecureAction action, T... objs)
<T extends IObject> T	SecureAction.updateObject(T... objs) executes with special privileges within the SecuritySystem.

Methods in ome.security with parameters of type IObject

Modifier and Type	Method and Description
boolean	ACLVoter.allowAnnotate(IObject iObject, Details trustedDetails) test whether the given object should be annotatable given the trusted details.
boolean	CompositeACLVoter.allowAnnotate(IObject object, Details trustedDetails)
boolean	ACLVoter.allowChmod(IObject iObject) test whether the given object can have its Permissions changed within the current security context.
boolean	CompositeACLVoter.allowChmod(IObject object)
boolean	ACLVoter.allowCreation(IObject iObject) test whether the given object should be insertable into the DB.
boolean	CompositeACLVoter.allowCreation(IObject object)
boolean	ACLVoter.allowDelete(IObject iObject, Details trustedDetails) test whether the given object should be deleteable given the trusted details.
boolean	CompositeACLVoter.allowDelete(IObject object, Details trustedDetails)
boolean	ACLVoter.allowUpdate(IObject iObject, Details trustedDetails) test whether the given object should be updateable given the trusted details.
boolean	CompositeACLVoter.allowUpdate(IObject object, Details trustedDetails)
void	ChmodStrategy.check(IObject obj, Object check) Performs one of the checks returned by ChmodStrategy.getChecks(IObject obj, String permissions).
Details	SecuritySystem.checkManagedDetails(IObject iObject, Details trustedDetails) checks that a non-privileged user has not attempted to edit the entity's security details.
Details	SecuritySystemHolder.checkManagedDetails(IObject object, Details trustedDetails)
void	SecuritySystem.checkRestriction(String name, IObject obj) Checks whether or not a Policy instance of matching name has been registered, considers itself active, and considers the passed context object to be restricted.
void	SecuritySystemHolder.checkRestriction(String name, IObject obj)
void	ChmodStrategy.chmod(IObject obj, String permissions) Change the permissions for the given object.
<T extends IObject> T	SecuritySystem.doAction(SecureAction action, T... objs)
<T extends IObject> T	SecuritySystemHolder.doAction(SecureAction action, T... objs)
Object[]	ChmodStrategy.getChecks(IObject obj, String permissions) Return all the checks necessary to validate the given object if it were to have its permissions.
boolean	SecuritySystem.hasPrivilegedToken(IObject obj) checks that the IObject argument has been granted a Token by the SecuritySystem.
boolean	SecuritySystemHolder.hasPrivilegedToken(IObject obj)
Details	SecuritySystem.newTransientDetails(IObject iObject) creates a new secure details for transient entities.
Details	SecuritySystemHolder.newTransientDetails(IObject object)
void	ACLVoter.postProcess(IObject obj) Gives the ACLVoter instance a chance to act on the IObject after the transaction but before finishing the AOP stack.
void	CompositeACLVoter.postProcess(IObject object)
Set<String>	ACLVoter.restrictions(IObject object) Provide the active restrictions for this IObject.
Set<String>	CompositeACLVoter.restrictions(IObject object)
void	ACLVoter.throwCreationViolation(IObject iObject) throws a SecurityViolation based on the given IObject and the context of the current user.
void	CompositeACLVoter.throwCreationViolation(IObject object)
void	ACLVoter.throwDeleteViolation(IObject iObject) throws a SecurityViolation based on the given IObject and the context of the current user.
void	CompositeACLVoter.throwDeleteViolation(IObject object)
void	ACLVoter.throwLoadViolation(IObject iObject) throws a SecurityViolation based on the given IObject and the context of the current user.
void	CompositeACLVoter.throwLoadViolation(IObject object)
void	ACLVoter.throwUpdateViolation(IObject iObject) throws a SecurityViolation based on the given IObject and the context of the current user.
void	CompositeACLVoter.throwUpdateViolation(IObject object)
<T extends IObject> T	SecureAction.updateObject(T... objs) executes with special privileges within the SecuritySystem.

Method parameters in ome.security with type arguments of type IObject

Modifier and Type	Method and Description
boolean	ACLVoter.allowLoad(org.hibernate.Session session, Class<? extends IObject> klass, Details trustedDetails, long id) test whether the object of the given Class with the given Details should be loadable in the current security context.
boolean	CompositeACLVoter.allowLoad(org.hibernate.Session session, Class<? extends IObject> klass, Details trustedDetails, long id)
boolean	SecuritySystem.isSystemType(Class<? extends IObject> klass) checks if instances of the given type are "System-Types".
boolean	SecuritySystemHolder.isSystemType(Class<? extends IObject> klass)

Uses of IObject in ome.security.auth

Methods in ome.security.auth with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> Set<String>	OmeroModelContextMapper.getAttribute(T modelObj)
<T extends IObject> AttributeSet	OmeroModelContextMapper.getAttributeSet(T modelObj)
<T extends IObject> String	OmeroModelContextMapper.getDn(T modelObj)

Uses of IObject in ome.security.basic

Methods in ome.security.basic with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> T	BasicSecuritySystem.doAction(SecureAction action, T... objs) It would be better to catch the SecureAction.updateObject(IObject...) method in a try/finally block, but since flush can be so poorly controlled that's not possible. instead, we use the one time token which is removed this Object is checked for privileges.

Methods in ome.security.basic that return types with arguments of type IObject

Modifier and Type	Method and Description
Set<IObject>	BasicEventContext.getLockCandidates()

Methods in ome.security.basic with parameters of type IObject

Modifier and Type	Method and Description
boolean	BasicACLVoter.allowAnnotate(IObject iObject, Details trustedDetails)
boolean	BasicACLVoter.allowChmod(IObject iObject)
boolean	BasicACLVoter.allowCreation(IObject iObject)
boolean	BasicACLVoter.allowDelete(IObject iObject, Details trustedDetails)
boolean	BasicACLVoter.allowUpdate(IObject iObject, Details trustedDetails)
void	GroupChmodStrategy.check(IObject obj, Object check) Here we used the checks returned from ExtendedMetadata to iterate through every non-system table and check that it has no FKs which point to back to its rows and violate the read permissions which are being reduced.
Details	BasicSecuritySystem.checkManagedDetails(IObject object, Details trustedDetails)
Details	OmeroInterceptor.checkManagedDetails(IObject iobj, Details previousDetails)
protected Details	OmeroInterceptor.checkManagedDetails(IObject iobj, Details previousDetails, Details newDetails) Like OmeroInterceptor.checkManagedDetails(IObject, Details, Details) but allows passing in a specific Details instance.
void	BasicSecuritySystem.checkRestriction(String name, IObject obj)
void	GroupChmodStrategy.chmod(IObject obj, String permissions)
void	BasicSecuritySystem.copyToken(IObject source, IObject copy)
void	TokenHolder.copyToken(IObject source, IObject copy) copy a token from one IObject to another.
<T extends IObject> T	BasicSecuritySystem.doAction(SecureAction action, T... objs) It would be better to catch the SecureAction.updateObject(IObject...) method in a try/finally block, but since flush can be so poorly controlled that's not possible. instead, we use the one time token which is removed this Object is checked for privileges.
Details	OmeroInterceptor.evaluateLinkages(IObject changedObject) Checks the details of the objects which the given object links to in order to guarantee that linkages are valid.
Object[]	GroupChmodStrategy.getChecks(IObject obj, String permissions)
boolean	BasicSecuritySystem.hasPrivilegedToken(IObject obj)
boolean	TokenHolder.hasPrivilegedToken(IObject obj)
boolean	BasicSecuritySystem.isOwnerOrSupervisor(IObject iObject) tests whether or not the current user is either the owner of this entity, or the superivsor of this entity, for example as root or as group owner.
boolean	CurrentDetails.isOwnerOrSupervisor(IObject object)
protected boolean	OmeroInterceptor.managedEvent(boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails)
protected boolean	OmeroInterceptor.managedExternalInfo(boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) responsible for guaranteeing that external info is not modified by any users, including root.
protected boolean	OmeroInterceptor.managedGroup(boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails, BasicEventContext bec)
protected boolean	OmeroInterceptor.managedOwner(boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails, BasicEventContext bec)
Details	BasicSecuritySystem.newTransientDetails(IObject object)
Details	OmeroInterceptor.newTransientDetails(IObject obj)
protected Details	OmeroInterceptor.newTransientDetails(IObject obj, Details newDetails) Like OmeroInterceptor.newTransientDetails(IObject) but allows passing in a newDetails object with possibly preset values.
void	BasicACLVoter.postProcess(IObject object)
protected void	MergeEventListener.propagateHiddenValues(IObject from, IObject to)
protected boolean	OmeroInterceptor.resetDetails(IObject entity, Object[] currentState, Object[] previousState, int idx, Details newDetails) asks BasicSecuritySystem to create a new managed Details based on the previous state of this entity.
Set<String>	BasicACLVoter.restrictions(IObject object)
void	BasicACLVoter.throwCreationViolation(IObject iObject)
void	BasicACLVoter.throwDeleteViolation(IObject iObject)
void	BasicACLVoter.throwLoadViolation(IObject iObject)
void	BasicACLVoter.throwUpdateViolation(IObject iObject)

Method parameters in ome.security.basic with type arguments of type IObject

Modifier and Type	Method and Description
boolean	BasicACLVoter.allowLoad(org.hibernate.Session session, Class<? extends IObject> klass, Details d, long id) delegates to SecurityFilter because that is where the logic is defined for the read filter Ignores the id for the moment.
boolean	BasicSecuritySystem.isSystemType(Class<? extends IObject> klass) classes which cannot be created by regular users.
void	BasicEventContext.setLockCandidates(Set<IObject> lockCandidates)

Uses of IObject in ome.security.policy

Fields in ome.security.policy with type parameters of type IObject

Modifier and Type	Field and Description
protected Set<Class<IObject>>	BasePolicy.types

Methods in ome.security.policy that return types with arguments of type IObject

Modifier and Type	Method and Description
Set<Class<IObject>>	BasePolicy.getTypes()
Set<Class<IObject>>	Policy.getTypes() Each Policy should tell the PolicyService which types of IObject instances it cares about.

Methods in ome.security.policy with parameters of type IObject

Modifier and Type	Method and Description
void	BasePolicy.checkRestriction(IObject obj)
void	BinaryAccessPolicy.checkRestriction(IObject obj)
void	Policy.checkRestriction(IObject obj) Like Policy.isRestricted(IObject) but throws an appropriate SecurityViolation subclass if the restriction is active.
void	DefaultPolicyService.checkRestriction(String name, IObject obj)
void	PolicyService.checkRestriction(String name, IObject obj) Give each configured Policy instance the chance to throw a SecurityViolation from its Policy.checkRestriction(IObject) method.
protected boolean	DefaultPolicyService.filterObject(IObject obj) Limit the objects to which Policy instances are applied.
protected Set<String>	BinaryAccessPolicy.groupRestrictions(IObject obj)
boolean	BasePolicy.isRestricted(IObject obj)
boolean	BinaryAccessPolicy.isRestricted(IObject obj)
boolean	Policy.isRestricted(IObject obj) Checks whether or not this instance would throw a SecurityViolation if the same instance were passed to Policy.checkRestriction(IObject).
boolean	DefaultPolicyService.isRestricted(String name, IObject obj)
boolean	PolicyService.isRestricted(String name, IObject obj) Ask each configured Policy instance with the given name argument if it considers the restriction active for the given IObject argument.
Set<String>	DefaultPolicyService.listActiveRestrictions(IObject obj)
Set<String>	PolicyService.listActiveRestrictions(IObject obj) Return all identifier strings as would be passed as the first argument to PolicyService.isRestricted(String, IObject) or PolicyService.checkRestriction(String, IObject) which considers itself active for the given argument.

Constructor parameters in ome.security.policy with type arguments of type IObject

Constructor and Description
BasePolicy(Set<Class<IObject>> types)
BinaryAccessPolicy(Set<Class<IObject>> types, ACLVoter voter)
BinaryAccessPolicy(Set<Class<IObject>> types, ACLVoter voter, String[] config)

Uses of IObject in ome.security.sharing

Methods in ome.security.sharing with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> T	SharingSecuritySystem.doAction(SecureAction action, T... objs)

Methods in ome.security.sharing with parameters of type IObject

Modifier and Type	Method and Description
boolean	SharingACLVoter.allowAnnotate(IObject iObject, Details trustedDetails)
boolean	SharingACLVoter.allowChmod(IObject iObject)
boolean	SharingACLVoter.allowCreation(IObject iObject)
boolean	SharingACLVoter.allowDelete(IObject iObject, Details trustedDetails)
boolean	SharingACLVoter.allowUpdate(IObject iObject, Details trustedDetails)
Details	SharingSecuritySystem.checkManagedDetails(IObject object, Details trustedDetails)
void	SharingSecuritySystem.checkRestriction(String name, IObject obj)
<T extends IObject> T	SharingSecuritySystem.doAction(SecureAction action, T... objs)
boolean	SharingSecuritySystem.hasPrivilegedToken(IObject obj)
Details	SharingSecuritySystem.newTransientDetails(IObject object)
void	SharingACLVoter.postProcess(IObject object)
Set<String>	SharingACLVoter.restrictions(IObject object)
void	SharingACLVoter.throwCreationViolation(IObject iObject)
void	SharingACLVoter.throwDeleteViolation(IObject iObject)
void	SharingACLVoter.throwLoadViolation(IObject iObject)
void	SharingACLVoter.throwUpdateViolation(IObject iObject)

Method parameters in ome.security.sharing with type arguments of type IObject

Modifier and Type	Method and Description
boolean	SharingACLVoter.allowLoad(org.hibernate.Session session, Class<? extends IObject> klass, Details d, long id)
boolean	SharingSecuritySystem.isSystemType(Class<? extends IObject> klass)

Uses of IObject in ome.services

Methods in ome.services with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> void	SearchBean.fetchAlso(Map<T,String> fetches)
<T extends IObject> void	SearchBean.onlyType(Class<T> klass)
<T extends IObject> void	SearchBean.onlyTypes(Class<T>... classes)
<T extends IObject> List<T>	SearchBean.results()

Methods in ome.services that return IObject

Modifier and Type	Method and Description
IObject	SearchBean.next()
protected IObject	SearchBean.pop(List<IObject> current) Wrapper method which should be called on all results for the user.

Method parameters in ome.services with type arguments of type IObject

Modifier and Type	Method and Description
void	SearchBean.addResult(List<IObject> result)
protected IObject	SearchBean.pop(List<IObject> current) Wrapper method which should be called on all results for the user.

Uses of IObject in ome.services.blitz.measurements

Methods in ome.services.blitz.measurements with parameters of type IObject

Modifier and Type	Method and Description
void	MeasurementStore.addObject(String lsid, IObject obj)
void	OmeroMeasurementStore.addObject(String lsid, IObject object)

Method parameters in ome.services.blitz.measurements with type arguments of type IObject

Modifier and Type	Method and Description
void	MeasurementStore.addObjects(Map<String,IObject> map)
void	OmeroMeasurementStore.addObjects(Map<String,IObject> objects)

Uses of IObject in ome.services.blitz.repo

Methods in ome.services.blitz.repo with parameters of type IObject

Modifier and Type	Method and Description
void	RepositoryDao.saveObject(IObject object, Ice.Current current) Save the given model object.
void	RepositoryDaoImpl.saveObject(IObject object, Ice.Current current)

Uses of IObject in ome.services.delete

Methods in ome.services.delete that return types with arguments of type IObject

Modifier and Type	Method and Description
List<IObject>	DeleteBean.checkImageDelete(long id, boolean force)
List<IObject>	QueryConstraints.getResults()
List<IObject>	DeleteBean.previewImageDelete(long id, boolean force) This uses DeleteBean.IMAGE_QUERY to load all the subordinate metadata of the Image which will be deleted.

Uses of IObject in ome.services.eventlogs

Classes in ome.services.eventlogs with type parameters of type IObject

Modifier and Type	Class and Description
class	AllEntitiesPseudoLogLoader<T extends IObject> EventLogLoader which iterates through each object model type (in no particular order) and returns each object from lowest to highest id.

Methods in ome.services.eventlogs with parameters of type IObject

Modifier and Type	Method and Description
protected EventLog	AllEntitiesPseudoLogLoader.wrap(String cls, IObject obj)

Method parameters in ome.services.eventlogs with type arguments of type IObject

Modifier and Type	Method and Description
boolean	EventLogLoader.addEventLog(Class<? extends IObject> cls, long id) Adds an EventLog for the given Class and id to the backlog.
boolean	EventLogQueue.addEventLog(Class<? extends IObject> cls, long id) Only schedule a new backlog event if there is no currently registered event of that type.

Uses of IObject in ome.services.fulltext

Methods in ome.services.fulltext with type parameters of type IObject

Modifier and Type	Method and Description
protected <T extends IObject> void	BridgeHelper.reindex(T object) Publishes a ReindexMessage which will get processed asynchronously.
protected <T extends IObject> void	BridgeHelper.reindexAll(List<T> list) Publishes a ReindexMessage which will get processed asynchronously.

Methods in ome.services.fulltext that return IObject

Modifier and Type	Method and Description
protected IObject	FullTextIndexer.get(org.hibernate.Session session, Class type, long id)

Methods in ome.services.fulltext with parameters of type IObject

Modifier and Type	Method and Description
void	FullTextBridge.set_annotations(String name, IObject object, org.apache.lucene.document.Document document, org.hibernate.search.bridge.LuceneOptions opts) Walks the various Annotation instances attached to the object argument and adds various levels to the index.
void	FullTextBridge.set_custom(String name, IObject object, org.apache.lucene.document.Document document, org.hibernate.search.bridge.LuceneOptions opts) Loops over each field bridge class and calls its FieldBridge.set(String, Object, Document, LuceneOptions) method.
void	FullTextBridge.set_details(String name, IObject object, org.apache.lucene.document.Document document, org.hibernate.search.bridge.LuceneOptions opts) Parses all ownership and time-based details to the index for the given object.
void	FullTextBridge.set_file(String name, IObject object, org.apache.lucene.document.Document document, org.hibernate.search.bridge.LuceneOptions opts) Uses BridgeHelper.parse(OriginalFile, OriginalFilesService, Map) to get a Reader for the given file which is then passed to BridgeHelper.addContents(Document, String, OriginalFile, OriginalFilesService, Map, LuceneOptions) using the field name "file".

Uses of IObject in ome.services.graphs

Fields in ome.services.graphs declared as IObject

Modifier and Type	Field and Description
IObject	GraphPolicy.Details.subject the unloaded instance

Methods in ome.services.graphs that return types with arguments of type IObject

Modifier and Type	Method and Description
Class<? extends IObject>	GraphPathBean.getClassForSimpleName(String simpleName)
Map.Entry<Collection<IObject>,Collection<IObject>>	GraphTraversal.planOperation(org.hibernate.Session session, Collection<? extends IObject> objectInstances, boolean include, boolean applyRules) Traverse model object graph to determine steps for the proposed operation.
Map.Entry<Collection<IObject>,Collection<IObject>>	GraphTraversal.planOperation(org.hibernate.Session session, Collection<? extends IObject> objectInstances, boolean include, boolean applyRules) Traverse model object graph to determine steps for the proposed operation.

Methods in ome.services.graphs with parameters of type IObject

Modifier and Type	Method and Description
void	GraphPolicy.noteDetails(org.hibernate.Session session, IObject object, String realClass, long id) Any model object about which policy may be asked is first passed to GraphPolicy.noteDetails(Session, IObject, String, long) before GraphPolicy.review(Map, Details, Map, Set, boolean).
void	GraphPolicyRulePredicate.noteDetails(org.hibernate.Session session, IObject object, String realClass, long id) Once this instance is submitted to GraphPolicy.registerPredicate(GraphPolicyRulePredicate) then this method is called by GraphPolicy.noteDetails(org.hibernate.Session, IObject, String, long).
void	GroupPredicate.noteDetails(org.hibernate.Session session, IObject object, String realClass, long id)
void	PermissionsPredicate.noteDetails(org.hibernate.Session session, IObject object, String realClass, long id)

Method parameters in ome.services.graphs with type arguments of type IObject

Modifier and Type	Method and Description
Map.Entry<Collection<IObject>,Collection<IObject>>	GraphTraversal.planOperation(org.hibernate.Session session, Collection<? extends IObject> objectInstances, boolean include, boolean applyRules) Traverse model object graph to determine steps for the proposed operation.

Uses of IObject in ome.services.mail

Methods in ome.services.mail that return types with arguments of type IObject

Modifier and Type	Method and Description
Class<IObject>	ObjectMailSender.getObjectClass()

Method parameters in ome.services.mail with type arguments of type IObject

Modifier and Type	Method and Description
void	ObjectMailSender.setObjectClass(Class<IObject> klass)

Uses of IObject in ome.services.messages

Classes in ome.services.messages with type parameters of type IObject

Modifier and Type	Class and Description
class	ReindexMessage<T extends IObject> Published when one or more IObject instances must be re-indexed.

Fields in ome.services.messages with type parameters of type IObject

Modifier and Type	Field and Description
Class<? extends IObject>	EventLogMessage.entityType

Constructor parameters in ome.services.messages with type arguments of type IObject

Constructor and Description
EventLogMessage(Object source, String action, Class<? extends IObject> entityType, List<Long> entityIds)

Uses of IObject in ome.services.search

Fields in ome.services.search with type parameters of type IObject

Modifier and Type	Field and Description
protected List<IObject>	SearchAction.chainedList List of IObject instances which have currently been found.

Methods in ome.services.search with parameters of type IObject

Modifier and Type	Method and Description
Object[]	FullText.getProjections(IObject object)
Float	FullText.getScore(IObject object)
Integer	FullText.getTotalSize(IObject object)

Method parameters in ome.services.search with type arguments of type IObject

Modifier and Type	Method and Description
void	SearchAction.chainedSearch(List<IObject> chainedList) Set the current list of found ids from previous searches, which should be chained in this search.

Uses of IObject in ome.services.sessions

Methods in ome.services.sessions that return IObject

Modifier and Type	Method and Description
IObject	SessionManager.setSecurityContext(Principal principal, IObject obj) Sets the context for the current session to the given value.
IObject	SessionManagerImpl.setSecurityContext(Principal principal, IObject obj)

Methods in ome.services.sessions with parameters of type IObject

Modifier and Type	Method and Description
IObject	SessionManager.setSecurityContext(Principal principal, IObject obj) Sets the context for the current session to the given value.
IObject	SessionManagerImpl.setSecurityContext(Principal principal, IObject obj)

Uses of IObject in ome.services.sessions.events

Constructors in ome.services.sessions.events with parameters of type IObject

Constructor and Description
ChangeSecurityContextEvent(Object source, String sessionUuid, IObject previous, IObject next)

Uses of IObject in ome.services.sharing

Methods in ome.services.sharing with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> void	ShareBean.addObject(long shareId, T object)
<T extends IObject> void	ShareBean.addObjects(long shareId, T... objects)
<T extends IObject> boolean	ShareStore.contains(long sessionId, Class<T> kls, long objId)
<T extends IObject> long	ShareBean.createShare(String description, Timestamp expiration, List<T> items, List<Experimenter> exps, List<String> guests, boolean enabled)
<T extends IObject> boolean	BlobShareStore.doContains(long sessionId, Class<T> kls, long objId)
abstract <T extends IObject> boolean	ShareStore.doContains(long sessionId, Class<T> kls, long objId)
protected <T extends IObject> boolean	BlobShareStore.doContains(ome.services.sharing.data.ShareData data, Class<T> kls, long objId)
<T extends IObject> Map<Class<T>,List<Long>>	ShareBean.getContentMap(long shareId)
<T extends IObject> List<T>	ShareBean.getContents(long shareId)
<T extends IObject> List<T>	ShareBean.getContentSubList(long shareId, int start, int finish)
protected <T extends IObject> List<T>	ShareBean.list(List<ome.services.sharing.data.Obj> objectList)
protected <T extends IObject> Map<Class<T>,List<Long>>	ShareBean.map(Map<String,List<Long>> map)
<T extends IObject> void	ShareBean.removeObject(long shareId, T object)
<T extends IObject> void	ShareBean.removeObjects(long shareId, T... objects)
<T extends IObject> ome.services.sharing.data.ShareData	ShareStore.set(Share share, long owner, List<T> objects, List<Long> members, List<String> guests, boolean enabled)

Methods in ome.services.sharing with parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> void	ShareBean.addObjects(long shareId, T... objects)
<T extends IObject> void	ShareBean.removeObjects(long shareId, T... objects)

Uses of IObject in ome.tools

Methods in ome.tools with type parameters of type IObject

Modifier and Type	Method and Description
static <T extends IObject> Set<T>	HierarchyTransformations.invertPDI(Set<Image> imagesAll, CBlock<T> block)

Uses of IObject in ome.tools.hibernate

Methods in ome.tools.hibernate with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> T	SecureMerge.updateObject(T... objs)

Methods in ome.tools.hibernate that return IObject

Modifier and Type	Method and Description
IObject[]	ExtendedMetadata.getLockCandidates(IObject iObject) walks the IObject argument non-recursively and gathers all IObject instances which will be linked to by the creation or updating of the argument.
IObject[]	ExtendedMetadata.Impl.getLockCandidates(IObject iObject) walks the IObject argument non-recursively and gathers all IObject instances which will be linked to by the creation or updating of the argument.
IObject[]	ExtendedMetadata.Locks.getLockCandidates(IObject o)

Methods in ome.tools.hibernate that return types with arguments of type IObject

Modifier and Type	Method and Description
Class<IObject>	ExtendedMetadata.getHibernateClass(String table) Given the name of a database table or alternatively the simple class name (non-fully qualified) of an IObject, this method returns the class which Hibernate will map that table to.
Class<IObject>	ExtendedMetadata.Impl.getHibernateClass(String table)
Class<IObject>	ExtendedMetadata.Impl.getTargetType(String field) Returns the IObject type which a given field points to.

Methods in ome.tools.hibernate with parameters of type IObject

Modifier and Type	Method and Description
static void	HibernateUtils.fixNulledOrFilteredCollections(IObject entity, IObject target, org.hibernate.persister.entity.EntityPersister persister, org.hibernate.engine.SessionImplementor source) loads collections which have been filtered or nulled by the user
IObject[]	ExtendedMetadata.getLockCandidates(IObject iObject) walks the IObject argument non-recursively and gathers all IObject instances which will be linked to by the creation or updating of the argument.
IObject[]	ExtendedMetadata.Impl.getLockCandidates(IObject iObject) walks the IObject argument non-recursively and gathers all IObject instances which will be linked to by the creation or updating of the argument.
IObject[]	ExtendedMetadata.Locks.getLockCandidates(IObject o)
static boolean	HibernateUtils.idEqual(IObject arg1, IObject arg2) returns true under the following circumstances: both arguments are null, or both arguments are identical (==), or both arguments have the same id value(equals)
static Long	HibernateUtils.nullSafeGroupId(IObject iobject) returns the id of the group of this entity, or null if: (1) the object is null, (2) the Details is null, (3) the group is null.
static Long	HibernateUtils.nullSafeOwnerId(IObject iobject) returns the id of the owner of this entity, or null if: (1) the object is null, (2) the Details is null, (3) the owner is null.
<T extends IObject> T	SecureMerge.updateObject(T... objs)

Method parameters in ome.tools.hibernate with type arguments of type IObject

Modifier and Type	Method and Description
String[]	ExtendedMetadata.Impl.getImmutableFields(Class<? extends IObject> klass)
String[][]	ExtendedMetadata.getLockCandidateChecks(Class<? extends IObject> klass, boolean onlyWithGroups) Rather than iterating over an IObject like ExtendedMetadata.getLockCandidates(IObject) this method returns type/field name pairs (like ExtendedMetadata.getLockChecks(Class)) to allow performing the queries manually.
String[][]	ExtendedMetadata.Impl.getLockCandidateChecks(Class<? extends IObject> k, boolean onlyWithGroups)
String[][]	ExtendedMetadata.getLockChecks(Class<? extends IObject> klass) returns all class/field name pairs which may possibly link to an object of type klass.
String[][]	ExtendedMetadata.Impl.getLockChecks(Class<? extends IObject> klass) returns all class/field name pairs which may possibly link to an object of type klass.
boolean	ExtendedMetadata.mayHaveMapProperties(Class<? extends IObject> iObjectClass) Check if an object of this class may have map properties.
boolean	ExtendedMetadata.Impl.mayHaveMapProperties(Class<? extends IObject> iObjectClass)

Uses of IObject in ome.util

Classes in ome.util that implement IObject

Modifier and Type	Class and Description
class	PermDetails wrapper class which can be used in HQL queries to properly load the full context for a permissions object.

Methods in ome.util with type parameters of type IObject

Modifier and Type	Method and Description
<T extends IObject> T	ShallowCopy.copy(T original)
static <T extends IObject> T	ShallowCopy.reflectiveNewInstance(T f)
static <T extends IObject> Class<T>	Utils.trueClass(Class<T> source) finds the "true" class identified by a given Class object.
static <T extends IObject> T	Utils.trueInstance(Class<T> source) instantiates an object using the trueClass.

Methods in ome.util with parameters of type IObject

Modifier and Type	Method and Description
E	CBlock.call(IObject object) invoke this block.
Object	IdBlock.call(IObject arg0)
static Validation	Validator.validate(IObject obj)

Constructors in ome.util with parameters of type IObject

Constructor and Description
PermDetails(IObject context)

Uses of IObject in omero.cmd.graphs

Methods in omero.cmd.graphs that return types with arguments of type IObject

Modifier and Type	Method and Description
<R extends omero.cmd.GraphModify2> Set<Class<? extends IObject>>	GraphRequestFactory.getLegalTargets(Class<R> requestClass) Get the legal target object classes for the given request.

Methods in omero.cmd.graphs with parameters of type IObject

Modifier and Type	Method and Description
void	BaseGraphPolicyAdjuster.noteDetails(org.hibernate.Session session, IObject object, String realClass, long id)

Method parameters in omero.cmd.graphs with type arguments of type IObject

Modifier and Type	Method and Description
Boolean	ChildOptionI.isIncludeType(Class<? extends IObject> objectClass) Test if this child option adjusts graph traversal policy for the given child object class.

Constructor parameters in omero.cmd.graphs with type arguments of type IObject

Constructor and Description
Chgrp2I(ACLVoter aclVoter, Roles securityRoles, SystemTypes systemTypes, GraphPathBean graphPathBean, Deletion deletionInstance, Set<Class<? extends IObject>> targetClasses, GraphPolicy graphPolicy, com.google.common.collect.SetMultimap<String,String> unnullable) Construct a new chgrp request; called from GraphRequestFactory.getRequest(Class).
Chmod2I(ACLVoter aclVoter, Roles securityRoles, SystemTypes systemTypes, GraphPathBean graphPathBean, Deletion deletionInstance, Set<Class<? extends IObject>> targetClasses, GraphPolicy graphPolicy, com.google.common.collect.SetMultimap<String,String> unnullable) Construct a new chmod request; called from GraphRequestFactory.getRequest(Class).
Chown2I(ACLVoter aclVoter, Roles securityRoles, SystemTypes systemTypes, GraphPathBean graphPathBean, Deletion deletionInstance, Set<Class<? extends IObject>> targetClasses, GraphPolicy graphPolicy, com.google.common.collect.SetMultimap<String,String> unnullable) Construct a new chown request; called from GraphRequestFactory.getRequest(Class).
Delete2I(ACLVoter aclVoter, Roles securityRoles, SystemTypes systemTypes, GraphPathBean graphPathBean, Deletion deletionInstance, Set<Class<? extends IObject>> targetClasses, GraphPolicy graphPolicy, com.google.common.collect.SetMultimap<String,String> unnullable) Construct a new delete request; called from GraphRequestFactory.getRequest(Class).

Uses of IObject in omero.util

Methods in omero.util that return types with arguments of type IObject

Modifier and Type	Method and Description
static Class<? extends IObject>	IceMapper.omeroClass(String className, boolean strict)