Package | Description |
---|---|
ome.api |
Contains the central verbs of the Omero System.
|
ome.logic |
The central repository of implementations which will be accessible through this server.
|
Modifier and Type | Method and Description |
---|---|
Map<Boolean,List<Long>> |
IRenderingSettings.applySettingsToImages(long from,
List<Long> to)
Applies rendering settings to a given
Image . |
<T extends IObject> |
IRenderingSettings.applySettingsToSet(long from,
Class<T> type,
Set<Long> nodeIds)
Applies rendering settings to one or many containers.
|
Long |
IPixels.copyAndResizeImage(long imageId,
Integer sizeX,
Integer sizeY,
Integer sizeZ,
Integer sizeT,
List<Integer> channelList,
String name,
boolean copyStats)
Copies the metadata, and only the metadata linked to a Image
object into a new Image object of equal or differing size across one
or many of its three physical dimensions or temporal dimension.
|
Long |
IPixels.copyAndResizePixels(long pixelsId,
Integer sizeX,
Integer sizeY,
Integer sizeZ,
Integer sizeT,
List<Integer> channelList,
String methodology,
boolean copyStats)
Copies the metadata, and only the metadata linked to a Pixels
object into a new Pixels object of equal or differing size across one
or many of its three physical dimensions or temporal dimension.
|
Long |
IMetadata.countSpecifiedAnnotations(Class type,
Set<String> include,
Set<String> exclude,
Parameters options)
Counts the number of annotation of a given type.
|
Long |
IMetadata.countSpecifiedAnnotations(Class type,
Set<String> include,
Set<String> exclude,
Parameters options)
Counts the number of annotation of a given type.
|
Long |
IPixels.createImage(int sizeX,
int sizeY,
int sizeZ,
int sizeT,
List<Integer> channelList,
PixelsType pixelType,
String name,
String description)
Creates the metadata, and only the metadata linked to an Image
object.
|
<T extends IObject> |
IShare.createShare(String description,
Timestamp expiration,
List<T> items,
List<Experimenter> exps,
List<String> guests,
boolean enabled)
|
<T extends IObject> |
IShare.createShare(String description,
Timestamp expiration,
List<T> items,
List<Experimenter> exps,
List<String> guests,
boolean enabled)
|
<T extends IObject> |
IShare.createShare(String description,
Timestamp expiration,
List<T> items,
List<Experimenter> exps,
List<String> guests,
boolean enabled)
|
void |
ThumbnailStore.createThumbnailsByLongestSideSet(Integer size,
Set<Long> pixelsIds)
Creates thumbnails for a number of pixels sets using a given set of
rendering settings (RenderingDef) in the on-disk cache.
|
void |
IDelete.deleteImages(Set<Long> ids,
boolean force)
Deletes several
Image instances within a single transaction via
the IDelete.deleteImage(long, boolean) method. |
<T extends IObject> |
IContainer.findContainerHierarchies(Class<T> rootNodeType,
Set<Long> imagesIds,
Parameters options)
Retrieves hierarchy trees in various hierarchies that contain the
specified Images.
|
Map |
IContainer.getCollectionCount(String type,
String property,
Set<Long> ids,
Parameters options)
Counts the number of members in a collection for a given object.
|
Map<Long,Long> |
IShare.getCommentCount(Set<Long> shareIds)
Returns a map from share id to comment count.
|
byte[] |
RawPixelsStore.getHypercube(List<Integer> offset,
List<Integer> size,
List<Integer> step) |
byte[] |
RawPixelsStore.getHypercube(List<Integer> offset,
List<Integer> size,
List<Integer> step) |
byte[] |
RawPixelsStore.getHypercube(List<Integer> offset,
List<Integer> size,
List<Integer> step) |
<T extends IObject> |
IContainer.getImages(Class<T> rootNodeType,
Set<Long> rootNodeIds,
Parameters options)
Retrieve a user's (or all users') images within any given container.
|
Map<Long,Long> |
IShare.getMemberCount(Set<Long> shareIds)
Returns a map from share id to the count of total members (including the
owner).
|
Map<Long,Long> |
IMetadata.getTaggedObjectsCount(Set<Long> tagIds,
Parameters options)
Returns a map whose key is a tag's id and the value the number of
Projects, Datasets, and Images linked to that tag.
|
Map<Long,byte[]> |
ThumbnailStore.getThumbnailByLongestSideSet(Integer size,
Set<Long> pixelsIds)
Retrieves a number of thumbnails for pixels sets using given sets of
rendering settings (RenderingDef).
|
Map<Long,byte[]> |
ThumbnailStore.getThumbnailSet(Integer sizeX,
Integer sizeY,
Set<Long> pixelsIds)
Retrieves a number of thumbnails for pixels sets using given sets of
rendering settings (RenderingDef).
|
<A extends Annotation> |
IMetadata.loadAnnotation(Set<Long> annotationIds)
Loads the specified annotations.
|
<T extends IObject,A extends Annotation> |
IMetadata.loadAnnotations(Class<T> nodeType,
Set<Long> rootNodeIds,
Set<String> annotationType,
Set<Long> annotatorIds,
Parameters options)
Loads all the annotations of given types,
that have been attached to the specified
rootNodes
for the specified annotatorIds . |
<T extends IObject,A extends Annotation> |
IMetadata.loadAnnotations(Class<T> nodeType,
Set<Long> rootNodeIds,
Set<String> annotationType,
Set<Long> annotatorIds,
Parameters options)
Loads all the annotations of given types,
that have been attached to the specified
rootNodes
for the specified annotatorIds . |
<T extends IObject,A extends Annotation> |
IMetadata.loadAnnotations(Class<T> nodeType,
Set<Long> rootNodeIds,
Set<String> annotationType,
Set<Long> annotatorIds,
Parameters options)
Loads all the annotations of given types,
that have been attached to the specified
rootNodes
for the specified annotatorIds . |
Set<LogicalChannel> |
IMetadata.loadChannelAcquisitionData(Set<Long> ids)
Loads the
logical channels and the acquisition metadata
related to them. |
<T extends IObject> |
IContainer.loadContainerHierarchy(Class<T> rootNodeType,
Set<Long> rootNodeIds,
Parameters options)
Retrieves hierarchy trees rooted by a given node (unless orphan is
specified -- See below)
This method also retrieves the Experimenters linked to the objects in the
tree.
|
Map<Long,Set<IObject>> |
IMetadata.loadLogFiles(Class<? extends IObject> rootNodeType,
Set<Long> ids)
Find the original file IDs for the import logs corresponding to the given Image or Fileset IDs.
|
<A extends Annotation> |
IMetadata.loadSpecifiedAnnotations(Class type,
Set<String> include,
Set<String> exclude,
Parameters options)
Loads all the annotations of a given type.
|
<A extends Annotation> |
IMetadata.loadSpecifiedAnnotations(Class type,
Set<String> include,
Set<String> exclude,
Parameters options)
Loads all the annotations of a given type.
|
<A extends Annotation> |
IMetadata.loadSpecifiedAnnotationsLinkedTo(Class type,
Set<String> include,
Set<String> exclude,
Class rootNodeType,
Set<Long> rootNodeIds,
Parameters options)
Loads the annotations of a given type linked to the specified objects.
|
<A extends Annotation> |
IMetadata.loadSpecifiedAnnotationsLinkedTo(Class type,
Set<String> include,
Set<String> exclude,
Class rootNodeType,
Set<Long> rootNodeIds,
Parameters options)
Loads the annotations of a given type linked to the specified objects.
|
<A extends Annotation> |
IMetadata.loadSpecifiedAnnotationsLinkedTo(Class type,
Set<String> include,
Set<String> exclude,
Class rootNodeType,
Set<Long> rootNodeIds,
Parameters options)
Loads the annotations of a given type linked to the specified objects.
|
Map<Long,Set<IObject>> |
IMetadata.loadTagContent(Set<Long> tagIds,
Parameters options)
Loads the Tag Set if the id is specified otherwise loads all the Tag
Set.
|
void |
RawPixelsStore.prepare(Set<Long> pixelsIds)
Prepares the stateful service with a cache of loaded Pixels objects.
|
long |
IProjection.projectPixels(long pixelsId,
PixelsType pixelsType,
int algorithm,
int tStart,
int tEnd,
List<Integer> channels,
int stepping,
int zStart,
int zEnd,
String name)
Performs a projection through selected optical sections and optical
sections for a given set of time points of a Pixels set.
|
void |
IShare.removeUsers(long shareId,
List<Experimenter> exps)
Removes
experimenters from
share |
<T extends IObject> |
IRenderingSettings.resetDefaultsByOwnerInSet(Class<T> type,
Set<Long> nodeIds)
Resets the rendering settings of a given group of containers based on
the owner's (essentially a copy).
|
<T extends IObject> |
IRenderingSettings.resetDefaultsInSet(Class<T> type,
Set<Long> nodeIds)
Resets a rendering settings back to one or many containers that are
specified by the rendering engine intelligent pretty good image
(PG) logic.
|
<T extends IObject> |
IRenderingSettings.resetMinMaxInSet(Class<T> type,
Set<Long> nodeIds)
Resets a the channel windows for one or many containers back to their
global minimum and global maximum for the channel.
|
void |
IUpdate.saveCollection(Collection<IObject> graph) |
<T extends IObject> |
IRenderingSettings.setOriginalSettingsInSet(Class<T> type,
Set<Long> nodeIds)
Resets a rendering settings back to channel global minimum and maximum
for the specified containers.
|
<T extends IEnum> |
ITypes.updateEnumerations(List<T> listEnum)
updates enumeration value specified by object
|
Modifier and Type | Method and Description |
---|---|
Map |
MetadataImpl.getTaggedObjectsCount(Set<Long> tagIds,
Parameters options) |
<A extends Annotation> |
MetadataImpl.loadAnnotation(Set<Long> annotationIds) |
Set |
MetadataImpl.loadChannelAcquisitionData(Set<Long> ids) |
Map<Long,Set<IObject>> |
MetadataImpl.loadLogFiles(Class<? extends IObject> rootNodeType,
Set<Long> ids) |
<A extends Annotation> |
MetadataImpl.loadSpecifiedAnnotationsLinkedTo(Class type,
Set<String> include,
Set<String> exclude,
Class rootNodeType,
Set<Long> rootNodeIds,
Parameters options) |
Map<Long,Set<IObject>> |
MetadataImpl.loadTagContent(Set<Long> tagIds,
Parameters options) |
Version: 5.2.0-ice35-b12
Copyright © 2015 The University of Dundee & Open Microscopy Environment. All Rights Reserved.