Uses of Package
loci.formats
Packages that use loci.formats
Package
Description
Bio-Formats: a library for reading and writing popular microscopy file
formats.
Package containing Bio-Formats caching logic, for managing
subsets of large collections of image planes in memory.
Package containing Bio-Formats graphical user interface code.
Package containing Bio-Formats file format readers.
Package containing core Bio-Formats metadata interfaces for the OME data model.
Package containing Bio-Formats file format writers.
Package containing Bio-Formats TIFF code of general utility.
Package containing utility methods corresponding
to the Bio-Formats command line tools.
Bio-Formats Plugins: a collection of plugins for ImageJ, including the
Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro Extensions,
Data Browser and Stack Slicer.
Bio-Formats Importer plugin for ImageJ.
Bio-Formats Macro Extensions plugin for ImageJ.
Utility classes and methods for the Bio-Formats plugins for ImageJ.
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Classes in loci.formats used by loci.formatsClassDescriptionAxisGuesser guesses which blocks in a file pattern correspond to which dimensional axes (Z, T, C or S), potentially recommending an adjustment in dimension order within the files, depending on the confidence of each guess.For indexed color data representing true color, factors out the indices, replacing them with the color table values directly.Logic to automatically merge channels in a file.Logic to automatically separate the channels in a file.ClassList is a list of classes for use with
ImageReaderorImageWriter, parsed from a configuration file such as readers.txt or writers.txt.Encompasses core metadata values.Handles swapping the dimension order of an image series.Encompasses basic metadata about a file.Represents a collection of files meant to be part of the same data series.FilePatternBlock represents a single block in aFilePattern.FormatException is the exception thrown when something goes wrong performing a file format operation.Abstract superclass of all biological file format readers and writers.Abstract superclass of all biological file format readers.Interface for reading pre-compressed image tiles.Interface for writing pre-compressed image tiles.Interface for all biological file format readers and writers.Interface for all biological file format readers.Interface for all biological file format writers.Interface for defining image pyramids.A container of metadata for FormatReader and other reader implementations.Logic to compute minimum and maximum values for each channel.MissingLibraryException is the exception thrown when a particular data stream or filename requires a library that is not present on the system.Represents a subdimension of Z, C, or T as needed for supporting Modulo annotations.NumberFilter is a helper filter for FilePattern.findPattern().Abstract superclass of reader logic that wraps other readers.Represents a single subresolution in a pyramid.ExtendsCoreMetadatato include the notion of an "input order" for planes: the input order being the order planes are stored on disk.Abstract superclass of writer logic that wraps other writers. -
Classes in loci.formats used by loci.formats.cacheClassDescriptionFormatException is the exception thrown when something goes wrong performing a file format operation.Interface for all biological file format readers.
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Classes in loci.formats used by loci.formats.codecClassDescriptionFormatException is the exception thrown when something goes wrong performing a file format operation.
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Classes in loci.formats used by loci.formats.dicomClassDescriptionEncompasses core metadata values.FormatException is the exception thrown when something goes wrong performing a file format operation.
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Classes in loci.formats used by loci.formats.guiClassDescriptionHandles swapping the dimension order of an image series.Logic to stitch together files with similar names.FormatException is the exception thrown when something goes wrong performing a file format operation.Interface for reading pre-compressed image tiles.Interface for writing pre-compressed image tiles.Interface for all biological file format readers and writers.Interface for all biological file format readers.Interface for all biological file format writers.ImageWriter is the master file format writer for all supported formats.Interface for defining image pyramids.Abstract superclass of reader logic that wraps other readers.Abstract superclass of writer logic that wraps other writers.
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Classes in loci.formats used by loci.formats.inClassDescriptionLogic to automatically separate the channels in a file.Encompasses core metadata values.DelegateReader is a file format reader that selects which reader to use for a format if there are two readers which handle the same format.Logic to stitch together files with similar names.FormatException is the exception thrown when something goes wrong performing a file format operation.Abstract superclass of all biological file format readers and writers.Abstract superclass of all biological file format readers.Interface for reading pre-compressed image tiles.Interface for all biological file format readers and writers.Interface for all biological file format readers.ImageReader is the master file format reader for all supported formats.Interface for defining image pyramids.MissingLibraryException is the exception thrown when a particular data stream or filename requires a library that is not present on the system.Abstract superclass of reader logic that wraps other readers.Abstract superclass of all biological file format readers that can handle image pyramids.UnsupportedCompressionException is the exception thrown when the compression scheme used in a particular file or stream is unsupported.Helper class for readers which wrap other readers.
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Classes in loci.formats used by loci.formats.in.LeicaMicrosystemsMetadataClassDescriptionEncompasses core metadata values.FormatException is the exception thrown when something goes wrong performing a file format operation.Abstract superclass of all biological file format readers and writers.Abstract superclass of all biological file format readers.Interface for reading pre-compressed image tiles.Interface for all biological file format readers and writers.Interface for all biological file format readers.Interface for defining image pyramids.
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Classes in loci.formats used by loci.formats.metaClassDescriptionRepresents a subdimension of Z, C, or T as needed for supporting Modulo annotations.
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Classes in loci.formats used by loci.formats.outClassDescriptionFormatException is the exception thrown when something goes wrong performing a file format operation.Abstract superclass of all biological file format readers and writers.Abstract superclass of all biological file format writers.Interface for writing pre-compressed image tiles.Interface for all biological file format readers and writers.Interface for all biological file format writers.Interface for defining image pyramids.
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Classes in loci.formats used by loci.formats.servicesClassDescriptionEncompasses core metadata values.FormatException is the exception thrown when something goes wrong performing a file format operation.Represents a subdimension of Z, C, or T as needed for supporting Modulo annotations.
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Classes in loci.formats used by loci.formats.tiffClassDescriptionFormatException is the exception thrown when something goes wrong performing a file format operation.
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Classes in loci.formats used by loci.formats.toolsClassDescriptionEncompasses core metadata values.FormatException is the exception thrown when something goes wrong performing a file format operation.Interface for all biological file format readers.Utility class helping with generating human-readable resource names based on alphanumeric indexing.
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Classes in loci.formats used by loci.pluginsClassDescriptionFormatException is the exception thrown when something goes wrong performing a file format operation.
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Classes in loci.formats used by loci.plugins.inClassDescriptionFor indexed color data representing true color, factors out the indices, replacing them with the color table values directly.Logic to automatically separate the channels in a file.Handles swapping the dimension order of an image series.Represents a collection of files meant to be part of the same data series.Logic to stitch together files with similar names.FormatException is the exception thrown when something goes wrong performing a file format operation.Interface for all biological file format readers.ImageReader is the master file format reader for all supported formats.Logic to compute minimum and maximum values for each channel.Represents a subdimension of Z, C, or T as needed for supporting Modulo annotations.
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Classes in loci.formats used by loci.plugins.macroClassDescriptionFormatException is the exception thrown when something goes wrong performing a file format operation.Interface for all biological file format readers.
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Classes in loci.formats used by loci.plugins.utilClassDescriptionFormatException is the exception thrown when something goes wrong performing a file format operation.Interface for reading pre-compressed image tiles.Interface for all biological file format readers and writers.Interface for all biological file format readers.ImageReader is the master file format reader for all supported formats.Interface for defining image pyramids.Abstract superclass of reader logic that wraps other readers.