Uses of Class
loci.formats.FormatHandler

Packages that use FormatHandler

Package	Description
loci.formats	Bio-Formats: a library for reading and writing popular microscopy file formats.
loci.formats.in	Package containing Bio-Formats file format readers.
loci.formats.in.LeicaMicrosystemsMetadata
loci.formats.out	Package containing Bio-Formats file format writers.

Uses of FormatHandler in loci.formats

Subclasses of FormatHandler in loci.formats

Modifier and Type	Class	Description
class	DelegateReader	DelegateReader is a file format reader that selects which reader to use for a format if there are two readers which handle the same format.
class	FormatReader	Abstract superclass of all biological file format readers.
class	FormatWriter	Abstract superclass of all biological file format writers.
class	SubResolutionFormatReader	Abstract superclass of all biological file format readers that can handle image pyramids.
class	WrappedReader	Helper class for readers which wrap other readers.

Uses of FormatHandler in loci.formats.in

Subclasses of FormatHandler in loci.formats.in

Modifier and Type	Class	Description
class	AFIReader	AFIReader is the file format reader for Aperio AFI files.
class	AIMReader	AIMReader is the file format reader for .aim files.
class	AliconaReader	AliconaReader is the file format reader for Alicona AL3D files.
class	AmiraReader	This is a file format reader for AmiraMesh data.
class	AnalyzeReader	AnalyzeReader is the file format reader for Analyze 7.5 files.
class	APLReader	APLReader is the file format reader for Olympus APL files.
class	APNGReader	APNGReader is the file format reader for Animated Portable Network Graphics (APNG) images.
class	ARFReader	ARFReader is the file format reader for Axon Raw Format (ARF) files, produced by INDEC BioSystems's Imaging Workbench software.
class	AVIReader	AVIReader is the file format reader for AVI files.
class	BaseTiffReader	BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
class	BaseZeissReader	BaseZeissReader contains common functionality required by readers for Zeiss AxioVision formats.
class	BDReader	BDReader is the file format reader for BD Pathway datasets.
class	BDVReader	Reader for BDV files.
class	BIFormatReader	BIFormatReader is the superclass for file format readers that use java.awt.image.BufferedImage as the native data type.
class	BioRadGelReader	BioRadGelReader is the file format reader for Bio-Rad gel files.
class	BioRadReader	BioRadReader is the file format reader for Bio-Rad PIC files.
class	BioRadSCNReader	BioRadSCNReader is the reader for Bio-Rad .scn files
class	BMPReader	BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
class	BrukerReader	BrukerReader is the file format reader for Bruker MRI files.
class	BurleighReader	BurleighReader is the file format reader for Burleigh .img files.
class	CanonRawReader	CanonRawReader is the file format reader for Canon RAW files.
class	CellH5Reader	Reader for CellH5 (HDF) files.
class	CellomicsReader	Reader for Cellomics C01 files.
class	CellSensReader	CellSensReader is the file format reader for cellSens .vsi files.
class	CellVoyagerReader	A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope ( http://www.yokogawa.com/scanner/products/cv1000e.htm).
class	CellWorxReader	CellWorxReader is the file format reader for CellWorx .pnl files.
class	ColumbusReader	ColumbusReader is the file format reader for screens exported from PerkinElmer Columbus.
class	CV7000Reader
class	DCIMGReader	DCIMGReader reads Hamamatsu DCIMG files.
class	DeltavisionReader	DeltavisionReader is the file format reader for Deltavision files.
class	DicomReader	DicomReader is the file format reader for DICOM files.
class	DNGReader	DNGReader is the file format reader for Canon DNG (TIFF) files.
class	Ecat7Reader	Ecat7Reader is the file format reader for ECAT 7 files.
class	EPSReader	Reader is the file format reader for Encapsulated PostScript (EPS) files.
class	FakeReader	FakeReader is the file format reader for faking input data.
class	FEIReader	FEIReader is the file format reader for FEI and Philips .img files.
class	FEITiffReader	FEITiffReader is the file format reader for TIFF files produced by various FEI software.
class	FilePatternReader
class	FitsReader	FitsReader is the file format reader for Flexible Image Transport System (FITS) images.
class	FlexReader	FlexReader is a file format reader for Evotec Flex files.
class	FlowSightReader
class	FluoviewReader	FluoviewReader is the file format reader for Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.
class	FujiReader	FujiReader is the file format reader for Fuji LAS 3000 datasets.
class	FV1000Reader	FV1000Reader is the file format reader for Fluoview FV 1000 OIB and Fluoview FV 1000 OIF files.
class	GatanDM2Reader	GatanDM2Reader is the file format reader for Gatan .dm2 files.
class	GatanReader	GatanReader is the file format reader for Gatan files.
class	GelReader	GelReader is the file format reader for Molecular Dynamics GEL TIFF files.
class	GIFReader	GIFReader is the file format reader for Graphics Interchange Format (GIF) files.
class	HamamatsuVMSReader	HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.
class	HISReader	HISReader is the file format reader for Hamamatsu .his files.
class	HitachiReader	HitachiReader is the file format reader for S-4800 files.
class	HRDGDFReader	HRDGDFReader is the file format reader for the Gridded Data Format used by NOAA's Hurricane Research Division.
class	I2IReader	I2IReader is the file format reader for I2I files.
class	ICSReader	ICSReader is the file format reader for ICS (Image Cytometry Standard) files.
class	IM3Reader
class	ImaconReader	ImaconReader is the file format reader for Imacon .fff (TIFF) files.
class	ImageIOReader	ImageIOReader is the superclass for file format readers that use the javax.imageio package.
class	ImagicReader	ImagicReader is the file format reader for IMAGIC files.
class	ImarisHDFReader	Reader for Bitplane Imaris 5.5 (HDF) files.
class	ImarisReader	ImarisReader is the file format reader for Bitplane Imaris files.
class	ImarisTiffReader	ImarisTiffReader is the file format reader for Bitplane Imaris 3 files (TIFF variant).
class	IMODReader	Reader for IMOD binary files.
class	ImprovisionTiffReader	ImprovisionTiffReader is the file format reader for Improvision TIFF files.
class	ImspectorReader	ImspectorReader is the file format reader for Imspector .msr files.
class	InCell3000Reader	InCell3000Reader is the file format reader for InCell 3000.
class	InCellReader	InCellReader is the file format reader for InCell 1000/2000 datasets.
class	INRReader	INRReader is the file format reader for INR files.
class	InveonReader	InveonReader is the file format reader for Inveon files.
class	IonpathMIBITiffReader	IonpathMIBITiffReader is the file format reader for Ionpath MIBI TIFF files.
class	IPLabReader	IPLabReader is the file format reader for IPLab (.IPL) files.
class	IPWReader	IPWReader is the file format reader for Image-Pro Workspace (IPW) files.
class	IvisionReader	IvisionReader is the file format reader for IVision (.IPM) files.
class	JDCEReader	JDCEReader is the file format reader for Molecular Devices JDCE plates.
class	JEOLReader	JEOLReader is the file format reader for JEOL files.
class	JPEG2000Reader	JPEG2000Reader is the file format reader for JPEG-2000 images.
class	JPEGReader	JPEGReader is the file format reader for JPEG images.
static class	JPEGReader.DefaultJPEGReader
class	JPKReader	JPKReader is the file format reader for JPK Instruments files.
class	JPXReader	JPXReader is the file format reader for JPX (3D JPEG-2000) images.
class	KhorosReader	Reader for Khoros XV files.
class	KLBReader	Reader for Keller Lab Block (KLB) files.
class	KodakReader	KodakReader is the file format reader for Kodak Molecular Imaging .bip files.
class	L2DReader	L2DReader is the file format reader for Li-Cor L2D datasets.
class	LeicaReader	LeicaReader is the file format reader for Leica files.
class	LeicaSCNReader	LeicaSCNReader is the file format reader for Leica SCN TIFF files.
class	LEOReader	LEOReader is the file format reader for LEO EM files.
class	LiFlimReader	LiFlimReader is the file format reader for LI-FLIM files.
class	LIFReader	LIFReader is the file format reader for Leica LIF files.
class	LIMReader	LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.
class	LOFReader	LOFReader is the file format reader for Leica Microsystems' LOF files.
class	MetamorphReader	Reader is the file format reader for Metamorph STK files.
class	MetamorphTiffReader	MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.
class	MetaxpressTiffReader	MetaxpressTiffReader is the file format reader for MetaXpress .htd + TIFF files.
class	MIASReader	MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.
class	MicroCTReader	MicroCTReader is the file format reader for VFF files from a GE MicroCT scanner.
class	MicromanagerReader	MicromanagerReader is the file format reader for Micro-Manager files.
class	MikroscanTiffReader	MikroscanTiffReader is the file format reader for Mikroscan TIFF files.
class	MINCReader	MINCReader is the file format reader for MINC MRI files.
class	MinimalTiffReader	MinimalTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
class	MNGReader	MNGReader is the file format reader for Multiple-image Network Graphics (MNG) files.
class	MolecularImagingReader	MolecularImagingReader is the file format reader for Molecular Imaging files.
class	MRCReader	MRCReader is the file format reader for MRC files.
class	MRWReader	MRWReader is the file format reader for Minolta MRW files.
class	NAFReader	NAFReader is the file format reader for Hamamatsu Aquacosmos NAF files.
class	ND2Reader	ND2Reader is the file format reader for Nikon ND2 files.
class	NDPIReader	NDPIReader is the file format reader for Hamamatsu .ndpi files.
class	NDPISReader	NDPISReader is the file format reader for Hamamatsu .ndpis files.
class	NiftiReader	NiftiReader is the file format reader for NIfTI files.
class	NikonElementsTiffReader	NikonElementsTiffReader is the file format reader for TIFF files produced by Nikon Elements.
class	NikonReader	NikonReader is the file format reader for Nikon NEF (TIFF) files.
class	NikonTiffReader	NikonTiffReader is the file format reader for Nikon TIFF files.
class	NRRDReader	File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.
class	OBFReader	OBFReader is the file format reader for Imspector OBF files.
class	OIRReader	OIRReader is the file format reader for Olympus .oir files.
class	OlympusTileReader	OlympusTileReader is the file format reader for Olympus .omp2info files.
class	OMETiffReader	OMETiffReader is the file format reader for OME-TIFF files.
class	OMEXMLReader	OMEXMLReader is the file format reader for OME-XML files.
class	OpenlabRawReader	OpenlabRawReader is the file format reader for Openlab RAW files.
class	OpenlabReader	OpenlabReader is the file format reader for Openlab LIFF files.
class	OperettaReader	OperettaReader is the file format reader for PerkinElmer Operetta data.
class	OxfordInstrumentsReader	OxfordInstrumentsReader is the file format reader for Oxford Instruments .top files.
class	PCIReader	PCIReader is the file format reader for SimplePCI (Compix) .cxd files.
class	PCORAWReader	PCORAWReader is the file format reader for PCORAW files.
class	PCXReader	PCXReader is the file format reader for PCX files (originally used by PC Paintbrush; now used in Zeiss' LSM Image Browser).
class	PDSReader	PDSReader is the file format reader for Perkin Elmer densitometer files.
class	PerkinElmerReader	PerkinElmerReader is the file format reader for PerkinElmer files.
class	PGMReader	PGMReader is the file format reader for Portable Gray Map (PGM) images.
class	PhotoshopTiffReader	PhotoshopTiffReader is the file format reader for Adobe Photoshop TIFF files.
class	PictReader	PictReader is the file format reader for Apple PICT files.
class	PovrayReader	PovrayReader is the file format reader for POV-Ray .df3 files.
class	PQBinReader	PQBinReader is the file format reader for PicoQuant .bin files.
class	PrairieReader	PrairieReader is the file format reader for Prairie Technologies' TIFF variant.
class	PSDReader	PSDReader is the file format reader for Photoshop PSD files.
class	PyramidTiffReader	PyramidTiffReader is the file format reader for pyramid TIFFs.
class	QTReader	QTReader is the file format reader for QuickTime movie files.
class	QuesantReader	QuesantReader is the file format reader for Quesant .afm files.
class	RCPNLReader
class	RHKReader	RHKReader is the file format reader for RHK Technologies files.
class	SBIGReader	SBIGReader is the file format reader for SBIG files.
class	ScanrReader	ScanrReader is the file format reader for Olympus ScanR datasets.
class	SDTReader	SDTReader is the file format reader for Becker & Hickl SPC-Image SDT files.
class	SeikoReader	SeikoReader is the file format reader for Seiko .xqd/.xqf files.
class	SEQReader	SEQReader is the file format reader for Image-Pro Sequence files.
class	SIFReader	SIFReader is the file format reader for Andor SIF files.
class	SimplePCITiffReader	SimplePCITiffReader is the file format reader for TIFF files produced by SimplePCI software.
class	SISReader	SISReader is the file format reader for Olympus Soft Imaging Solutions TIFF files.
class	SlideBook7Reader
class	SlidebookReader	SlidebookReader is the file format reader for 3I Slidebook files.
class	SlidebookTiffReader
class	SMCameraReader	SMCameraReader is the file format reader for SM camera files.
class	SPCReader	SPCReader is the file format reader for Becker & Hickl SPC-Image SPC FIFO files.
class	SPEReader	SPEReader is the file format reader for Princeton Instruments SPE .spe files.
class	SpiderReader	SpiderReader is the file format reader for SPIDER files.
class	SVSReader	SVSReader is the file format reader for Aperio SVS TIFF files.
class	TargaReader	File format reader for Truevision Targa files.
class	TCSReader	TCSReader is the file format reader for Leica TCS TIFF files and their companion XML file.
class	TecanReader
class	TextReader	Reader for text files containing tables of data.
class	TiffDelegateReader	TiffDelegateReader is a file format reader for TIFF files.
class	TiffJAIReader	TiffJAIReader is a file format reader for TIFF images.
class	TiffReader	TiffReader is the file format reader for regular TIFF files, not of any specific TIFF variant.
class	TileJPEGReader	Reader for decoding JPEG images using java.awt.Toolkit and TurboJPEG.
class	TillVisionReader	TillVisionReader is the file format reader for TillVision files.
class	TissueFAXSReader	Reader for TissueFAXS format from TissueGnostics.
class	TopometrixReader	TopometrixReader is the file format reader for TopoMetrix .tfr, .ffr, .zfr, .zfp, and .2fl files.
class	TrestleReader	TrestleReader is the file format reader for Trestle slide datasets.
class	UBMReader	UBMReader is the file format reader for UBM .pr3 files.
class	UnisokuReader	UnisokuReader is the file format reader for Unisoku STM files.
class	VarianFDFReader	VarianFDFReader is the file format reader for Varian FDF files.
class	VectraReader	VectraReader is the reader for PerkinElmer Vectra QPTIFF data
class	VeecoReader	VeecoReader is the file format reader for Veeco HDF files.
class	VentanaReader	VentanaReader is the file format reader for Ventana .bif files.
class	VGSAMReader	VGSAMReader is the file format reader for VG SAM .dti files.
class	VisitechReader	VisitechReader is the file format reader for Visitech XYS files.
class	VolocityClippingReader	VolocityClippingReader is the file format reader for Volocity library clipping files.
class	VolocityReader	VolocityReader is the file format reader for Volocity library files.
class	WATOPReader	WATOPReader is the file format reader for WA Technology .wat files.
class	XLEFReader	XLEFReader is the file format reader for Leica Microsystems' XLEF files.
class	ZeissCZIReader	ZeissCZIReader is the file format reader for Zeiss .czi files.
class	ZeissLMSReader	Zeiss LMS reader for data from Zeiss CSM 700 systems.
class	ZeissLSMReader	ZeissLSMReader is the file format reader for Zeiss LSM files.
class	ZeissTIFFReader	ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF files and their companion XML file.
class	ZeissXRMReader	ZeissXRMReader is the file format reader for Zeiss X-Ray Microscopy .txm and .txrm files.
class	ZeissZVIReader	ZeissZVIReader is the file format reader for Zeiss ZVI files.
class	ZipReader	Reader for Zip files.

Uses of FormatHandler in loci.formats.in.LeicaMicrosystemsMetadata

Subclasses of FormatHandler in loci.formats.in.LeicaMicrosystemsMetadata

Modifier and Type	Class	Description
class	LMSFileReader	This class can be extended by readers of Leica Microsystems file formats that include LASX generated XML (e.g.
class	MultipleImagesReader	MultipleImagesReader presents a number of image files as one image reference

Uses of FormatHandler in loci.formats.out

Subclasses of FormatHandler in loci.formats.out

Modifier and Type	Class	Description
class	APNGWriter	APNGWriter is the file format writer for PNG and APNG files.
class	AVIWriter	AVIWriter is the file format writer for AVI files.
class	CellH5Writer	CellH5Writer is the file format writer for CellH5 format.
class	DicomWriter	DicomWriter is the file format writer for DICOM files.
class	EPSWriter	EPSWriter is the file format writer for Encapsulated PostScript (EPS) files.
class	ICSWriter	ICSWriter is the file format writer for ICS files.
class	ImageIOWriter	ImageIOWriter is the superclass for file format writers that use the javax.imageio library.
class	JavaWriter	JavaWriter is the file format writer for Java source code.
class	JPEG2000Writer	JPEG2000Writer is the file format writer for JPEG2000 files.
class	JPEGWriter	JPEGWriter is the file format writer for JPEG files.
class	OMETiffWriter	OMETiffWriter is the file format writer for OME-TIFF files.
class	OMEXMLWriter	OMEXMLWriter is the file format writer for OME-XML files.
class	PyramidOMETiffWriter	PyramidOMETiffWriter is the file format writer for pyramid OME-TIFF files.
class	QTWriter	QTWriter is the file format writer for uncompressed QuickTime movie files.
class	TiffWriter	TiffWriter is the file format writer for TIFF files.
class	V3DrawWriter	V3DrawWriter writes images in the .v3draw format for rapid I/O in Vaa3D, an open-source 3D visualization and analysis toolkit.