Uses of Class
loci.formats.tiff.IFD

Packages that use IFD

Package	Description
loci.formats.in	Package containing Bio-Formats file format readers.
loci.formats.out	Package containing Bio-Formats file format writers.
loci.formats.tiff	Package containing Bio-Formats TIFF code of general utility.

Uses of IFD in loci.formats.in

Fields in loci.formats.in declared as IFD

Modifier and Type	Field and Description
protected IFD	NikonReader.original The original IFD.
protected IFD	DNGReader.original The original IFD.

Methods in loci.formats.in that return IFD

Modifier and Type	Method and Description
private static IFD	OMETiffReader.getFirstIFD(java.lang.String fname)
protected IFD	SVSReader.getIFD(int no) Get the IFD corresponding to the given plane in the current series.

Methods in loci.formats.in with parameters of type IFD

Modifier and Type	Method and Description
protected byte[]	MinimalTiffReader.copyTile(IFD ifd, byte[] buf, int x, int y)
protected long	MinimalTiffReader.getCompressedByteCount(IFD ifd, int x, int y)
private loci.common.RandomAccessInputStream	ZeissLSMReader.getCZTag(IFD ifd)
private long[]	NDPIReader.getMarkers(IFD ifd) Get the array of restart markers (offsets) for the given IFD.
private java.lang.String	BaseTiffReader.getResolutionUnitFromComment(IFD ifd) Extracts the resolution unit symbol from the comment field
protected int	MinimalTiffReader.getTileIndex(IFD ifd, int x, int y) Get the index of the tile corresponding to given IFD (plane) and tile XY indexes.
private byte[]	FlowSightReader.openBitmaskBytes(IFD ifd, int imageWidth, int imageHeight) Decode the whole IFD plane using bitmask compression
private byte[]	FlowSightReader.openGreyscaleBytes(IFD ifd, int imageWidth, int imageHeight) Decode the whole IFD plane using greyscale compression
protected void	BaseTiffReader.put(java.lang.String key, IFD ifd, int tag)
protected void	BaseTiffReader.putDouble(java.lang.String key, IFD ifd, int tag)
protected void	BaseTiffReader.putInt(java.lang.String key, IFD ifd, int tag)
protected void	BaseTiffReader.putString(java.lang.String key, IFD ifd, int tag)
private void	NDPIReader.resetStream(IFD ifd)
protected void	MinimalTiffReader.setResolutionLevel(IFD ifd) Sets the resolution level when we have JPEG 2000 compressed data.
private boolean	NDPIReader.useTiffParser(IFD ifd)

Uses of IFD in loci.formats.out

Fields in loci.formats.out declared as IFD

Modifier and Type	Field and Description
private IFD[][]	DicomWriter.ifds

Methods in loci.formats.out that return IFD

Modifier and Type	Method and Description
protected IFD	TiffWriter.makeIFD()
protected IFD	PyramidOMETiffWriter.makeIFD()

Methods in loci.formats.out with parameters of type IFD

Modifier and Type	Method and Description
private void	TiffWriter.formatCompression(IFD ifd) Sets the compression code for the specified IFD.
protected int	TiffWriter.prepareToWriteImage(int no, byte[] buf, IFD ifd, int x, int y, int w, int h) Performs the preparation for work prior to the usage of the TIFF saver.
void	TiffWriter.saveBytes(int no, byte[] buf, IFD ifd) Saves the given image to the specified (possibly already open) file.
void	TiffWriter.saveBytes(int no, byte[] buf, IFD ifd, int x, int y, int w, int h) Saves the given image to the specified series in the current file.
void	PyramidOMETiffWriter.saveBytes(int no, byte[] buf, IFD ifd, int x, int y, int w, int h)
void	OMETiffWriter.saveBytes(int no, byte[] buf, IFD ifd, int x, int y, int w, int h)

Uses of IFD in loci.formats.tiff

Fields in loci.formats.tiff declared as IFD

Modifier and Type	Field and Description
private IFD	TiffParser.firstIFD Cached first IFD in the current file.

Methods in loci.formats.tiff that return IFD

Modifier and Type	Method and Description
IFD	TiffParser.getFirstIFD() Gets the first IFD within the TIFF file, or null if the input source is not a valid TIFF file.
IFD	TiffParser.getIFD(long offset) Gets the IFD stored at the given offset.

Methods in loci.formats.tiff with parameters of type IFD

Modifier and Type	Method and Description
static void	TiffCompression.difference(byte[] input, IFD ifd) Performs in-place differencing according to the given predictor value.
void	TiffParser.fillInIFD(IFD ifd) Fill in IFD entries that are stored at an arbitrary offset.
int[]	TiffParser.getColorMap(IFD ifd) Retrieve the color map associated with the given IFD.
CodecOptions	TiffCompression.getCompressionCodecOptions(IFD ifd) Creates a set of codec options for compression.
CodecOptions	TiffCompression.getCompressionCodecOptions(IFD ifd, CodecOptions opt) Creates a set of codec options for compression.
byte[]	TiffParser.getSamples(IFD ifd, byte[] buf)
byte[]	TiffParser.getSamples(IFD ifd, byte[] buf, int x, int y, long width, long height)
byte[]	TiffParser.getSamples(IFD ifd, byte[] buf, int x, int y, long width, long height, int overlapX, int overlapY)
IFDList	TiffParser.getSubIFDs(IFD ifd) Returns the SUBIFDS belonging to a given IFD.
byte[]	TiffParser.getTile(IFD ifd, byte[] buf, int row, int col)
void	TiffSaver.makeValidIFD(IFD ifd, int pixelType, int nChannels) Makes a valid IFD.
static void	TiffCompression.undifference(byte[] input, IFD ifd) Undoes in-place differencing according to the given predictor value.
static void	TiffParser.unpackBytes(byte[] samples, int startIndex, byte[] bytes, IFD ifd) Extracts pixel information from the given byte array according to the bits per sample, photometric interpretation and color map IFD directory entry values, and the specified byte ordering.
void	TiffSaver.writeIFD(IFD ifd, long nextOffset) Write the given IFD to the open stream.
void	TiffSaver.writeIFD(IFD ifd, long nextOffset, boolean calculateOffset) Write the given IFD to the open stream.
private void	TiffSaver.writeIFDStrips(IFD ifd, int no, byte[][] strips, int nChannels, boolean last, int x, int y, long defaultByteCount)
void	TiffSaver.writeImage(byte[] buf, IFD ifd, int no, int pixelType, boolean last)
void	TiffSaver.writeImage(byte[] buf, IFD ifd, int no, int pixelType, int x, int y, int w, int h, boolean last) Writes to any rectangle from the passed block.
void	TiffSaver.writeImage(byte[] buf, IFD ifd, int no, int pixelType, int x, int y, int w, int h, boolean last, java.lang.Integer nChannels, boolean copyDirectly)
void	TiffSaver.writeImageIFD(IFD ifd, int no, byte[][] strips, int nChannels, boolean last, int x, int y) Performs the actual work of dealing with IFD data and writing it to the TIFF for a given image or sub-image.

Constructors in loci.formats.tiff with parameters of type IFD

Constructor and Description
IFD(IFD ifd)