loci.formats.out

Class PyramidOMETiffWriter

java.lang.Object

loci.formats.FormatHandler

loci.formats.FormatWriter

loci.formats.out.TiffWriter

loci.formats.out.OMETiffWriter

loci.formats.out.PyramidOMETiffWriter

All Implemented Interfaces:

java.io.Closeable, java.lang.AutoCloseable, ICompressedTileWriter, IFormatHandler, IFormatWriter, IMetadataConfigurable, IPyramidHandler

public class PyramidOMETiffWriter
extends OMETiffWriter

PyramidOMETiffWriter is the file format writer for pyramid OME-TIFF files.

Field Summary

Fields inherited from class loci.formats.out.OMETiffWriter

COMPANION_KEY, CREATOR_KEY

Fields inherited from class loci.formats.out.TiffWriter

canDetectBigTiff, checkParams, COMPRESSION_J2K, COMPRESSION_J2K_LOSSY, COMPRESSION_JPEG, COMPRESSION_LZW, COMPRESSION_UNCOMPRESSED, COMPRESSION_ZLIB, in, isBigTiff, tiffSaver, tileSizeX, tileSizeY

Fields inherited from class loci.formats.FormatWriter

cm, compression, compressionTypes, fps, initialized, interleaved, metadataRetrieve, options, out, resolution, resolutionData, sequential, series, validBits

Fields inherited from class loci.formats.FormatHandler

COMPRESSION_SUFFIXES, currentId, format, LOGGER, metadataOptions, suffixes

Constructor Summary

Constructors

Constructor and Description
PyramidOMETiffWriter()

Method Summary

Modifier and Type	Method and Description
void	close()
boolean	isThisType(java.lang.String name) Checks if a file matches the type of this format handler.
protected IFD	makeIFD()
void	saveBytes(int no, byte[] buf, IFD ifd, int x, int y, int w, int h) Saves the given image to the specified series in the current file.

Methods inherited from class loci.formats.out.OMETiffWriter

getCompanion, preserveCreator, saveBytes, saveCompressedBytes, setId

Methods inherited from class loci.formats.out.TiffWriter

canDoStacks, createInputStream, createTiffSaver, getCodec, getPixelTypes, getPlaneCount, getTileSizeX, getTileSizeY, prepareToWriteImage, saveBytes, setBigTiff, setCanDetectBigTiff, setTileSizeX, setTileSizeY, setupTiffSaver

Methods inherited from class loci.formats.FormatWriter

changeOutputFile, checkParams, createOutputStream, getCodecOptions, getColorModel, getCompression, getCompressionTypes, getFramesPerSecond, getMetadataRetrieve, getPixelTypes, getPlaneCount, getResolution, getResolutionCount, getResolutions, getSamplesPerPixel, getSamplesPerPixel, getSeries, getSizeX, getSizeY, hasResolutions, isFullPlane, isInterleaved, isSupportedType, saveBytes, saveBytes, savePlane, savePlane, savePlane, seekToPlaneOffset, setCodecOptions, setColorModel, setCompression, setFramesPerSecond, setInterleaved, setMetadataRetrieve, setResolution, setResolutions, setSeries, setValidBitsPerPixel, setWriteSequentially

Methods inherited from class loci.formats.FormatHandler

checkSuffix, checkSuffix, getFormat, getMetadataOptions, getNativeDataType, getSuffixes, getSupportedMetadataLevels, setMetadataOptions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface loci.formats.IFormatHandler

getFormat, getNativeDataType, getSuffixes

Methods inherited from interface loci.formats.IMetadataConfigurable

getMetadataOptions, getSupportedMetadataLevels, setMetadataOptions

Constructor Detail

PyramidOMETiffWriter

public PyramidOMETiffWriter()

Method Detail

isThisType

public boolean isThisType(java.lang.String name)

Description copied from class: FormatHandler

Checks if a file matches the type of this format handler. The default implementation checks filename suffixes against those known for this format.

Specified by:

isThisType in interface IFormatHandler

Overrides:

isThisType in class FormatHandler

makeIFD

protected IFD makeIFD()
               throws FormatException,
                      java.io.IOException

Overrides:

makeIFD in class TiffWriter

Throws:

FormatException

java.io.IOException

saveBytes

public void saveBytes(int no,
                      byte[] buf,
                      IFD ifd,
                      int x,
                      int y,
                      int w,
                      int h)
               throws FormatException,
                      java.io.IOException

Description copied from class: TiffWriter

Saves the given image to the specified series in the current file. The IFD hashtable allows specification of TIFF parameters such as bit depth, compression and units. Use one IFD instance per plane.

Overrides:

saveBytes in class OMETiffWriter

Throws:

FormatException

java.io.IOException

See Also:

IFormatWriter.saveBytes(int, byte[], int, int, int, int)

close

public void close()
           throws java.io.IOException

Specified by:

close in interface java.io.Closeable

Specified by:

close in interface java.lang.AutoCloseable

Overrides:

close in class OMETiffWriter

Throws:

java.io.IOException