public class MikroscanTiffReader extends SVSReader
| Modifier and Type | Field and Description |
|---|---|
private static org.slf4j.Logger |
LOGGER
Logger for this class.
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private static java.lang.String |
MIKROSCAN_IMAGE_DESCRIPTION_PREFIX
TIFF image description prefix for Mikroscan TIF files.
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REMOVE_THUMBNAIL_DEFAULT, REMOVE_THUMBNAIL_KEYDATE_FORMATScanSeparateSeries, equalStrips, ifds, lastPlane, mergeSubIFDs, noSubresolutions, seriesToIFD, subResolutionIFDs, thumbnailIFDs, tiffParser, use64BitcorecoreIndex, datasetDescription, domains, fillColor, filterMetadata, flattenedResolutions, group, hasCompanionFiles, in, indexedAsRGB, metadata, metadataStore, normalizeData, resolution, saveOriginalMetadata, series, suffixNecessary, suffixSufficient, THUMBNAIL_DIMENSIONCOMPRESSION_SUFFIXES, currentId, format, metadataOptions, suffixesCAN_GROUP, CANNOT_GROUP, MUST_GROUP| Constructor and Description |
|---|
MikroscanTiffReader()
Constructs a new Mikroscan TIF reader.
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| Modifier and Type | Method and Description |
|---|---|
boolean |
isThisType(java.lang.String name,
boolean open)
Checks if a file matches the type of this format reader.
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close, fileGroupOption, getDatestamp, getDisplayColor, getDyeNames, getEmission, getExcitation, getExposureTime, getIFD, getMagnification, getOptimalTileHeight, getOptimalTileWidth, getPhysicalSizes, getTileCodec, getTileCodecOptions, getTileColumns, getTileIndex, getTileRows, initMetadataStore, initStandardMetadata, openBytes, openCompressedBytes, openCompressedBytes, openThumbBytes, removeThumbnailgetExifTagName, getImageCreationDate, initFile, initMetadata, put, put, put, put, put, put, put, put, put, put, putDouble, putInt, putStringget16BitLookupTable, get8BitLookupTable, getIFDs, getThumbnailIFDs, getThumbSizeX, getThumbSizeY, initTiffParser, isThisType, reopenFile, setResolutionLevelcoreIndexToSeries, flattenHashtables, getCoreIndex, getCoreMetadataList, getCurrentCore, getResolution, getResolutionCount, getSeries, getSeriesCount, seriesToCoreIndex, setCoreIndex, setResolution, setSeriesaddGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMetaList, addMeta, addMetaList, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMetaList, close, getAcquisitionMode, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getArcType, getAvailableOptions, getBinning, getBitsPerPixel, getCompression, getContrastMethod, getCorrection, getCurrentFile, getDatasetStructureDescription, getDetectorType, getDimensionOrder, getDimensionOrder, getDomains, getEffectiveSizeC, getExperimentType, getFilamentType, getFillColor, getFillRule, getFilterType, getFontFamily, getFontStyle, getGlobalMeta, getGlobalMetadata, getIlluminationType, getImageCount, getImmersion, getIndex, getIndex, getLaserMedium, getLaserType, getMarker, getMedium, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getMicrobeamManipulationType, getMicroscopeType, getModuloC, getModuloT, getModuloZ, getNamingConvention, getPixelType, getPixelType, getPossibleDomains, getPulse, getRequiredDirectories, getRGBChannelCount, getRotationTransform, getSeriesMeta, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, getZCTModuloCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isSingleFile, isThisType, isThisType, isThumbnailSeries, isUsedFile, makeFilterMetadata, openBytes, openBytes, openBytes, openPlane, readPlane, readPlane, readPlane, setFillColor, setFlattenedResolutions, setGroupFiles, setId, setMetadataFiltered, setMetadataStore, setNormalized, setOriginalMetadataPopulated, updateMetadataListscheckSuffix, checkSuffix, getFormat, getMetadataOptions, getNativeDataType, getSuffixes, getSupportedMetadataLevels, setMetadataOptionsclone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitgetFormat, getNativeDataType, getSuffixesgetMetadataOptions, getSupportedMetadataLevels, setMetadataOptionsprivate static final org.slf4j.Logger LOGGER
private static final java.lang.String MIKROSCAN_IMAGE_DESCRIPTION_PREFIX
public MikroscanTiffReader()
public boolean isThisType(java.lang.String name,
boolean open)
FormatReaderFormatReader.isThisType(RandomAccessInputStream).isThisType in interface IFormatReaderisThisType in class SVSReaderopen - If true, and the file extension is insufficient to determine
the file type, the (existing) file is opened for further analysis.Copyright © 2024 Open Microscopy Environment