FV1000Reader (Bio-Formats API)

java.lang.Object
- loci.formats.FormatHandler
- - loci.formats.FormatReader
  - - loci.formats.in.FV1000Reader

All Implemented Interfaces:

java.io.Closeable, java.lang.AutoCloseable, ICompressedTileReader, IFormatHandler, IFormatReader, IMetadataConfigurable, IPyramidHandler
```
public class FV1000Reader
extends FormatReader
```
FV1000Reader is the file format reader for Fluoview FV 1000 OIB and Fluoview FV 1000 OIF files.

Author:

Melissa Linkert melissa at glencoesoftware.com

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

(package private) class FV1000Reader.ChannelData

(package private) class FV1000Reader.PlaneData

Nested Classes
Modifier and Type	Class and Description
`(package private) class`	`FV1000Reader.ChannelData`
`(package private) class`	`FV1000Reader.PlaneData`

Field Summary

Fields
Modifier and Type	Field and Description
`private static int`	`ARROW`
`private java.util.List<FV1000Reader.ChannelData>`	`channels`
`private static int`	`CIRCLE`
`private java.lang.String[]`	`code`
`private static int`	`COLOR_BAR`
`private java.lang.String`	`creationDate`
`static java.lang.String`	`DATE_FORMAT`
`private static int`	`ELLIPSE`
`private java.util.Map<java.lang.Integer,java.lang.String>`	`filenames`
`private static int`	`FREE_LINE`
`private static int`	`FREE_SHAPE`
`static java.lang.String`	`FV1000_MAGIC_STRING_1`
`static java.lang.String`	`FV1000_MAGIC_STRING_2`
`static java.lang.String[]`	`FV1000_SUFFIXES`
`private static int`	`GRID`
`private java.util.ArrayList<IFDList>`	`ifds`
`private java.util.List<java.lang.String>`	`illuminations`
`private int`	`imageDepth`
`private boolean`	`isOIB` Flag indicating this is an OIB dataset.
`private int`	`lastChannel`
`private java.lang.String`	`lensNA`
`private java.lang.String`	`line`
`private static int`	`LINE`
`private short[][][]`	`lut`
`private java.util.List<java.lang.String>`	`lutNames`
`private java.lang.String`	`magnification`
`private static int`	`NUM_DIMENSIONS`
`private java.lang.String`	`objectiveName`
`static java.lang.String[]`	`OIB_SUFFIX`
`private java.util.Map<java.lang.String,java.lang.String>`	`oibMapping` File mappings for OIB file.
`static java.lang.String[]`	`OIF_SUFFIX`
`private loci.common.IniParser`	`parser`
`private java.lang.String`	`pinholeSize`
`private java.lang.Double[]`	`pixelSize`
`private double`	`pixelSizeT`
`private java.lang.String`	`pixelSizeX`
`private java.lang.String`	`pixelSizeY`
`private double`	`pixelSizeZ`
`private java.util.List<FV1000Reader.PlaneData>`	`planes`
`private POIService`	`poi`
`private static int`	`POINT` ROI types.
`private static int`	`POLYGON`
`private static int`	`POLYLINE`
`static java.lang.String[]`	`PREVIEWNAME_PREFIXES`
`private java.util.List<java.lang.String>`	`previewNames`
`private java.lang.String`	`ptyEnd`
`private java.lang.String`	`ptyPattern`
`private java.lang.String`	`ptyStart`
`private static int`	`RECTANGLE`
`private java.util.Map<java.lang.Integer,java.lang.String>`	`roiFilenames`
`private static java.lang.String`	`ROTATION`
`private static int`	`SCALE`
`private java.lang.String[]`	`size`
`private java.lang.String`	`thumbId` Name of thumbnail file.
`private BMPReader`	`thumbReader` Helper reader for thumbnail.
`private java.util.List<java.lang.String>`	`tiffs` Names of every TIFF file to open.
`private java.util.List<java.lang.String>`	`usedFiles` Used file list.
`private int`	`validBits`
`private java.util.List<java.lang.Double>`	`wavelengths`
`private java.lang.String`	`workingDistance`

Fields inherited from class loci.formats.FormatReader
core, coreIndex, datasetDescription, domains, fillColor, filterMetadata, flattenedResolutions, group, hasCompanionFiles, in, indexedAsRGB, metadata, metadataStore, normalizeData, resolution, saveOriginalMetadata, series, suffixNecessary, suffixSufficient, THUMBNAIL_DIMENSION

Fields inherited from class loci.formats.FormatHandler
COMPRESSION_SUFFIXES, currentId, format, LOGGER, metadataOptions, suffixes

Fields inherited from interface loci.formats.IFormatReader
CAN_GROUP, CANNOT_GROUP, MUST_GROUP

Constructor Summary

Constructors
Constructor and Description

FV1000Reader()
Constructs a new FV1000 reader.

Constructors
Constructor and Description
`FV1000Reader()` Constructs a new FV1000 reader.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`private void`	`addPtyFiles()`
`void`	`close(boolean fileOnly)` Closes the currently open file.
`int`	`fileGroupOption(java.lang.String id)` Returns an indication of whether the files in a multi-file dataset can be handled individually.
`private java.lang.String`	`findOIFFile(java.lang.String baseFile)`
`short[][]`	`get16BitLookupTable()` Gets the 16-bit color lookup table associated with the most recently opened image.
`private loci.common.RandomAccessInputStream`	`getFile(java.lang.String name)`
`private loci.common.IniList`	`getIniFile(java.lang.String filename)`
`int`	`getOptimalTileHeight()` Returns the optimal sub-image height for use with openBytes.
`int`	`getOptimalTileWidth()` Returns the optimal sub-image width for use with openBytes.
`private loci.common.RandomAccessInputStream`	`getPlane(int seriesIndex, int planeIndex)`
`private java.lang.Integer`	`getPreviewNameIndex(java.lang.String key)`
`java.lang.String[]`	`getSeriesUsedFiles(boolean noPixels)` Returns an array of filenames needed to open the current series.
`protected void`	`initFile(java.lang.String id)` Initializes the given file (parsing header information, etc.).
`private void`	`initPOIService()`
`private boolean`	`isPreviewName(java.lang.String name)`
`boolean`	`isSingleFile(java.lang.String id)` Returns true if the named file is expected to be the only file in the dataset.
`boolean`	`isThisType(loci.common.RandomAccessInputStream stream)` Checks if the given stream is a valid stream for this file format.
`boolean`	`isThisType(java.lang.String name, boolean open)` Checks if a file matches the type of this format reader.
`private java.lang.String`	`mapOIBFiles()`
`byte[]`	`openBytes(int no, byte[] buf, int x, int y, int w, int h)` Obtains a sub-image of the specified image plane into a pre-allocated byte array.
`private int`	`parseROIFile(java.lang.String filename, MetadataStore store, int nextROI, int plane)`
`private void`	`populateMetadataStore(MetadataStore store, java.lang.String path)`
`private java.lang.String`	`removeGST(java.lang.String s)`
`private java.lang.String`	`replaceExtension(java.lang.String name, java.lang.String oldExt, java.lang.String newExt)`
`private java.lang.String`	`sanitizeFile(java.lang.String file, java.lang.String path)`
`private java.lang.String`	`sanitizeValue(java.lang.String value)`
`private static int[]`	`scanFormat(java.lang.String pattern, java.lang.String string)`

Methods inherited from class loci.formats.FormatReader
addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMetaList, addMeta, addMetaList, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMetaList, close, coreIndexToSeries, flattenHashtables, get8BitLookupTable, getAcquisitionMode, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getArcType, getAvailableOptions, getBinning, getBitsPerPixel, getCompression, getContrastMethod, getCoreIndex, getCoreMetadataList, getCorrection, getCurrentCore, getCurrentFile, getDatasetStructureDescription, getDetectorType, getDimensionOrder, getDimensionOrder, getDomains, getEffectiveSizeC, getExperimentType, getFilamentType, getFillColor, getFillRule, getFilterType, getFontFamily, getFontStyle, getGlobalMeta, getGlobalMetadata, getIlluminationType, getImageCount, getImmersion, getIndex, getIndex, getLaserMedium, getLaserType, getMarker, getMedium, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getMicrobeamManipulationType, getMicroscopeType, getModuloC, getModuloT, getModuloZ, getNamingConvention, getPixelType, getPixelType, getPossibleDomains, getPulse, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getRotationTransform, getSeries, getSeriesCount, getSeriesMeta, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getThumbSizeX, getThumbSizeY, getTileColumns, getTileRows, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, getZCTModuloCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isThisType, isThisType, isThumbnailSeries, isUsedFile, makeFilterMetadata, openBytes, openBytes, openBytes, openPlane, openThumbBytes, readPlane, readPlane, readPlane, reopenFile, seriesToCoreIndex, setCoreIndex, setFillColor, setFlattenedResolutions, setGroupFiles, setId, setMetadataFiltered, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries, updateMetadataLists

Methods inherited from class loci.formats.FormatHandler
checkSuffix, checkSuffix, getFormat, getMetadataOptions, getNativeDataType, getSuffixes, getSupportedMetadataLevels, setMetadataOptions

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface loci.formats.IFormatHandler
getFormat, getNativeDataType, getSuffixes

Methods inherited from interface loci.formats.IMetadataConfigurable
getMetadataOptions, getSupportedMetadataLevels, setMetadataOptions

Methods inherited from interface loci.formats.ICompressedTileReader
getTileCodec, getTileCodecOptions, openCompressedBytes, openCompressedBytes

- Field Detail
  - FV1000_MAGIC_STRING_1
```
public static final java.lang.String FV1000_MAGIC_STRING_1
```
    See Also:
    
    Constant Field Values
  - FV1000_MAGIC_STRING_2
```
public static final java.lang.String FV1000_MAGIC_STRING_2
```
    See Also:
    
    Constant Field Values
  - OIB_SUFFIX
```
public static final java.lang.String[] OIB_SUFFIX
```
  - OIF_SUFFIX
```
public static final java.lang.String[] OIF_SUFFIX
```
  - FV1000_SUFFIXES
```
public static final java.lang.String[] FV1000_SUFFIXES
```
  - PREVIEWNAME_PREFIXES
```
public static final java.lang.String[] PREVIEWNAME_PREFIXES
```
  - DATE_FORMAT
```
public static final java.lang.String DATE_FORMAT
```
    See Also:
    
    Constant Field Values
  - NUM_DIMENSIONS
```
private static final int NUM_DIMENSIONS
```
    See Also:
    
    Constant Field Values
  - POINT
```
private static final int POINT
```
    ROI types.
    
    See Also:
    
    Constant Field Values
  - LINE
```
private static final int LINE
```
    See Also:
    
    Constant Field Values
  - POLYLINE
```
private static final int POLYLINE
```
    See Also:
    
    Constant Field Values
  - RECTANGLE
```
private static final int RECTANGLE
```
    See Also:
    
    Constant Field Values
  - CIRCLE
```
private static final int CIRCLE
```
    See Also:
    
    Constant Field Values
  - ELLIPSE
```
private static final int ELLIPSE
```
    See Also:
    
    Constant Field Values
  - POLYGON
```
private static final int POLYGON
```
    See Also:
    
    Constant Field Values
  - FREE_SHAPE
```
private static final int FREE_SHAPE
```
    See Also:
    
    Constant Field Values
  - FREE_LINE
```
private static final int FREE_LINE
```
    See Also:
    
    Constant Field Values
  - GRID
```
private static final int GRID
```
    See Also:
    
    Constant Field Values
  - ARROW
```
private static final int ARROW
```
    See Also:
    
    Constant Field Values
  - COLOR_BAR
```
private static final int COLOR_BAR
```
    See Also:
    
    Constant Field Values
  - SCALE
```
private static final int SCALE
```
    See Also:
    
    Constant Field Values
  - ROTATION
```
private static final java.lang.String ROTATION
```
    See Also:
    
    Constant Field Values
  - parser
```
private loci.common.IniParser parser
```
  - tiffs
```
private java.util.List<java.lang.String> tiffs
```
    Names of every TIFF file to open.
  - thumbId
```
private java.lang.String thumbId
```
    Name of thumbnail file.
  - thumbReader
```
private BMPReader thumbReader
```
    Helper reader for thumbnail.
  - usedFiles
```
private java.util.List<java.lang.String> usedFiles
```
    Used file list.
  - isOIB
```
private boolean isOIB
```
    Flag indicating this is an OIB dataset.
  - oibMapping
```
private java.util.Map<java.lang.String,java.lang.String> oibMapping
```
    File mappings for OIB file.
  - code
```
private java.lang.String[] code
```
  - size
```
private java.lang.String[] size
```
  - pixelSize
```
private java.lang.Double[] pixelSize
```
  - imageDepth
```
private int imageDepth
```
  - previewNames
```
private java.util.List<java.lang.String> previewNames
```
  - pixelSizeX
```
private java.lang.String pixelSizeX
```
  - pixelSizeY
```
private java.lang.String pixelSizeY
```
  - validBits
```
private int validBits
```
  - illuminations
```
private java.util.List<java.lang.String> illuminations
```
  - wavelengths
```
private java.util.List<java.lang.Double> wavelengths
```
  - pinholeSize
```
private java.lang.String pinholeSize
```
  - magnification
```
private java.lang.String magnification
```
  - lensNA
```
private java.lang.String lensNA
```
  - objectiveName
```
private java.lang.String objectiveName
```
  - workingDistance
```
private java.lang.String workingDistance
```
  - creationDate
```
private java.lang.String creationDate
```
  - channels
```
private java.util.List<FV1000Reader.ChannelData> channels
```
  - lutNames
```
private java.util.List<java.lang.String> lutNames
```
  - filenames
```
private java.util.Map<java.lang.Integer,java.lang.String> filenames
```
  - roiFilenames
```
private java.util.Map<java.lang.Integer,java.lang.String> roiFilenames
```
  - planes
```
private java.util.List<FV1000Reader.PlaneData> planes
```
  - poi
```
private transient POIService poi
```
  - lut
```
private short[][][] lut
```
  - lastChannel
```
private int lastChannel
```
  - pixelSizeZ
```
private double pixelSizeZ
```
  - pixelSizeT
```
private double pixelSizeT
```
  - ptyStart
```
private java.lang.String ptyStart
```
  - ptyEnd
```
private java.lang.String ptyEnd
```
  - ptyPattern
```
private java.lang.String ptyPattern
```
  - line
```
private java.lang.String line
```
  - ifds
```
private java.util.ArrayList<IFDList> ifds
```
- Constructor Detail
  - FV1000Reader
```
public FV1000Reader()
```
    Constructs a new FV1000 reader.
- Method Detail
  - getOptimalTileWidth
```
public int getOptimalTileWidth()
```
    Description copied from interface: IFormatReader
    
    Returns the optimal sub-image width for use with openBytes.
    
    Specified by:
    
    getOptimalTileWidth in interface IFormatReader
    
    Overrides:
    
    getOptimalTileWidth in class FormatReader
  - getOptimalTileHeight
```
public int getOptimalTileHeight()
```
    Description copied from interface: IFormatReader
    
    Returns the optimal sub-image height for use with openBytes.
    
    Specified by:
    
    getOptimalTileHeight in interface IFormatReader
    
    Overrides:
    
    getOptimalTileHeight in class FormatReader
  - isSingleFile
```
public boolean isSingleFile(java.lang.String id)
                     throws FormatException,
                            java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Returns true if the named file is expected to be the only file in the dataset. For single-file formats, always returns true.
    
    Specified by:
    
    isSingleFile in interface IFormatReader
    
    Overrides:
    
    isSingleFile in class FormatReader
    
    Throws:
    
    FormatException
    
    java.io.IOException
  - isThisType
```
public boolean isThisType(java.lang.String name,
                          boolean open)
```
    Description copied from class: FormatReader
    
    Checks if a file matches the type of this format reader. Checks filename suffixes against those known for this format. If the suffix check is inconclusive and the open parameter is true, the file is opened and tested with FormatReader.isThisType(RandomAccessInputStream).
    
    Specified by:
    
    isThisType in interface IFormatReader
    
    Overrides:
    
    isThisType in class FormatReader
    
    open - If true, and the file extension is insufficient to determine the file type, the (existing) file is opened for further analysis.
  - isThisType
```
public boolean isThisType(loci.common.RandomAccessInputStream stream)
                   throws java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Checks if the given stream is a valid stream for this file format. The number of bytes read is format-dependent.
    
    Specified by:
    
    isThisType in interface IFormatReader
    
    Overrides:
    
    isThisType in class FormatReader
    
    Parameters:
    
    stream - A RandomAccessInputStream representing the file to check. The first byte in the stream is assumed to be the first byte in the file.
    
    Returns:
    
    true if the file represented by the stream can be read by this reader; false otherwise.
    
    Throws:
    
    java.io.IOException
  - fileGroupOption
```
public int fileGroupOption(java.lang.String id)
                    throws FormatException,
                           java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Returns an indication of whether the files in a multi-file dataset can be handled individually. This method is only useful for formats and datasets which contain multiple files.
    
    Specified by:
    
    fileGroupOption in interface IFormatReader
    
    Overrides:
    
    fileGroupOption in class FormatReader
    
    Parameters:
    
    id - a file in the multi-file dataset
    
    Returns:
    
    an int indicating that we cannot, must, or might group the files. A return value of FormatTools.MUST_GROUP indicates that the files cannot be handled separately; the reader will always detect and read all files in the dataset. FormatTools.CAN_GROUP indicates that the files may be handled separately, but file grouping must then be disabled via IFormatReader.setGroupFiles(boolean). FormatTools.CANNOT_GROUP indicates that the files must be handled separately; the reader will not attempt to read all files in the dataset (this is rare).
    
    Throws:
    
    FormatException
    
    java.io.IOException
    
    See Also:
    
    FormatTools.MUST_GROUP, FormatTools.CAN_GROUP, FormatTools.CANNOT_GROUP
  - get16BitLookupTable
```
public short[][] get16BitLookupTable()
```
    Description copied from interface: IFormatReader
    
    Gets the 16-bit color lookup table associated with the most recently opened image. If no image planes have been opened, or if IFormatReader.isIndexed() returns false, then this may return null. Also, if IFormatReader.getPixelType() returns anything other than FormatTools.INT16 or FormatTools.UINT16, this method will return null.
    
    Specified by:
    
    get16BitLookupTable in interface IFormatReader
    
    Overrides:
    
    get16BitLookupTable in class FormatReader
  - openBytes
```
public byte[] openBytes(int no,
                        byte[] buf,
                        int x,
                        int y,
                        int w,
                        int h)
                 throws FormatException,
                        java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Obtains a sub-image of the specified image plane into a pre-allocated byte array.
    
    Specified by:
    
    openBytes in interface IFormatReader
    
    Specified by:
    
    openBytes in class FormatReader
    
    Parameters:
    
    no - the plane index within the current series.
    
    buf - a pre-allocated buffer.
    
    x - X coordinate of the upper-left corner of the sub-image
    
    y - Y coordinate of the upper-left corner of the sub-image
    
    w - width of the sub-image
    
    h - height of the sub-image
    
    Returns:
    
    the pre-allocated buffer buf for convenience.
    
    Throws:
    
    FormatException - if there was a problem parsing the metadata of the file.
    
    java.io.IOException - if there was a problem reading the file.
    
    See Also:
    
    IFormatReader.openBytes(int, byte[], int, int, int, int)
  - getSeriesUsedFiles
```
public java.lang.String[] getSeriesUsedFiles(boolean noPixels)
```
    Description copied from interface: IFormatReader
    
    Returns an array of filenames needed to open the current series. If the 'noPixels' flag is set, then only files that do not contain pixel data will be returned. The first element in the array is expected to be the path passed to IFormatHandler.setId(String), if appropriate based upon 'noPixels'. The remaining elements are expected to be in a consistent order; if a directory listing is necessary to build the list then it should be sorted first.
    
    Specified by:
    
    getSeriesUsedFiles in interface IFormatReader
    
    Overrides:
    
    getSeriesUsedFiles in class FormatReader
  - close
```
public void close(boolean fileOnly)
           throws java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Closes the currently open file. If the flag is set, this is all that happens; if unset, it is equivalent to calling Closeable.close().
    
    Specified by:
    
    close in interface IFormatReader
    
    Overrides:
    
    close in class FormatReader
    
    Throws:
    
    java.io.IOException
  - initFile
```
protected void initFile(java.lang.String id)
                 throws FormatException,
                        java.io.IOException
```
    Description copied from class: FormatReader
    
    Initializes the given file (parsing header information, etc.). Most subclasses should override this method to perform initialization operations such as parsing metadata.
    
    Overrides:
    
    initFile in class FormatReader
    
    Throws:
    
    FormatException - if a parsing error occurs processing the file.
    
    java.io.IOException - if an I/O error occurs processing the file
  - populateMetadataStore
```
private void populateMetadataStore(MetadataStore store,
                                   java.lang.String path)
                            throws FormatException,
                                   java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException
  - parseROIFile
```
private int parseROIFile(java.lang.String filename,
                         MetadataStore store,
                         int nextROI,
                         int plane)
                  throws FormatException,
                         java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException
  - addPtyFiles
```
private void addPtyFiles()
                  throws FormatException
```
    Throws:
    
    FormatException
  - findOIFFile
```
private java.lang.String findOIFFile(java.lang.String baseFile)
                              throws FormatException
```
    Throws:
    
    FormatException
  - mapOIBFiles
```
private java.lang.String mapOIBFiles()
                              throws FormatException,
                                     java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException
  - sanitizeValue
```
private java.lang.String sanitizeValue(java.lang.String value)
```
  - sanitizeFile
```
private java.lang.String sanitizeFile(java.lang.String file,
                                      java.lang.String path)
```
  - removeGST
```
private java.lang.String removeGST(java.lang.String s)
```
  - initPOIService
```
private void initPOIService()
                     throws FormatException,
                            java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException
  - getFile
```
private loci.common.RandomAccessInputStream getFile(java.lang.String name)
                                             throws FormatException,
                                                    java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException
  - getPlane
```
private loci.common.RandomAccessInputStream getPlane(int seriesIndex,
                                                     int planeIndex)
```
  - getPreviewNameIndex
```
private java.lang.Integer getPreviewNameIndex(java.lang.String key)
```
  - isPreviewName
```
private boolean isPreviewName(java.lang.String name)
```
  - replaceExtension
```
private java.lang.String replaceExtension(java.lang.String name,
                                          java.lang.String oldExt,
                                          java.lang.String newExt)
```
  - scanFormat
```
private static int[] scanFormat(java.lang.String pattern,
                                java.lang.String string)
                         throws FormatException
```
    Throws:
    
    FormatException
  - getIniFile
```
private loci.common.IniList getIniFile(java.lang.String filename)
                                throws FormatException,
                                       java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException

Class FV1000Reader

Nested Class Summary

Field Summary

Fields inherited from class loci.formats.FormatReader

Fields inherited from class loci.formats.FormatHandler

Fields inherited from interface loci.formats.IFormatReader

Constructor Summary

Method Summary

Methods inherited from class loci.formats.FormatReader

Methods inherited from class loci.formats.FormatHandler

Methods inherited from class java.lang.Object

Methods inherited from interface loci.formats.IFormatHandler

Methods inherited from interface loci.formats.IMetadataConfigurable

Methods inherited from interface loci.formats.ICompressedTileReader

Field Detail

FV1000_MAGIC_STRING_1

FV1000_MAGIC_STRING_2

OIB_SUFFIX

OIF_SUFFIX

FV1000_SUFFIXES

PREVIEWNAME_PREFIXES

DATE_FORMAT

NUM_DIMENSIONS

POINT

LINE

POLYLINE

RECTANGLE

CIRCLE

ELLIPSE

POLYGON

FREE_SHAPE

FREE_LINE

GRID

ARROW

COLOR_BAR

SCALE

ROTATION

parser

tiffs

thumbId

thumbReader

usedFiles

isOIB

oibMapping

code

size

pixelSize

imageDepth

previewNames

pixelSizeX

pixelSizeY

validBits

illuminations

wavelengths

pinholeSize

magnification

lensNA

objectiveName

workingDistance

creationDate

channels

lutNames

filenames

roiFilenames

planes

poi

lut

lastChannel

pixelSizeZ

pixelSizeT

ptyStart

ptyEnd

ptyPattern

line

ifds

Constructor Detail

FV1000Reader

Method Detail

getOptimalTileWidth

getOptimalTileHeight