loci.formats.in

Class SlideBook7Reader.CImageGroup

java.lang.Object

loci.formats.in.SlideBook7Reader.ClassDecoder

loci.formats.in.SlideBook7Reader.CImageGroup

Enclosing class:

SlideBook7Reader

class SlideBook7Reader.CImageGroup
extends SlideBook7Reader.ClassDecoder

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
(package private) class	SlideBook7Reader.CImageGroup.CAnnotations
(package private) class	SlideBook7Reader.CImageGroup.CAuxDoubleData
(package private) class	SlideBook7Reader.CImageGroup.CAuxFloatData
(package private) class	SlideBook7Reader.CImageGroup.CAuxSInt32Data
(package private) class	SlideBook7Reader.CImageGroup.CAuxSInt64Data
(package private) class	SlideBook7Reader.CImageGroup.CAuxXmlData
(package private) class	SlideBook7Reader.CImageGroup.CMaskPositions

Field Summary

Fields

Modifier and Type	Field and Description
(package private) java.util.ArrayList<SlideBook7Reader.CAlignManipRecord70>	mAlignManipRecordList
(package private) java.util.ArrayList<SlideBook7Reader.CImageGroup.CAnnotations>	mAnnotationList
(package private) java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxDoubleData>	mAuxDoubleDataList
(package private) java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxFloatData>	mAuxFloatDataList
(package private) java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxSInt32Data>	mAuxSInt32DataList
(package private) java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxSInt64Data>	mAuxSInt64DataList
(package private) java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxXmlData>	mAuxXmlDataList
(package private) java.util.ArrayList<SlideBook7Reader.CChannelRecord70>	mChannelRecordList
(package private) java.lang.Integer[]	mElapsedTimes
(package private) SlideBook7Reader.CSBFile70	mFile
(package private) java.util.ArrayList<SlideBook7Reader.CFRETManipRecord70>	mFRETManipRecList
(package private) java.util.ArrayList<SlideBook7Reader.CHistogramRecord70>	mHistogramRecordList
(package private) java.util.ArrayList<SlideBook7Reader.CImageData>	mImageDataList
(package private) SlideBook7Reader.CImageRecord70	mImageRecord
(package private) java.lang.String	mImageTitle
(package private) java.util.ArrayList<SlideBook7Reader.CImageGroup.CMaskPositions>	mMaskPosList
(package private) java.util.ArrayList<SlideBook7Reader.CMaskRecord70>	mMaskRecordList
(package private) SlideBook7Reader.CNpyHeader	mNpyHeader
(package private) java.util.ArrayList<SlideBook7Reader.CRatioManipRecord70>	mRatioManipRecordList
(package private) java.util.ArrayList<SlideBook7Reader.CRemapChannelLUT70>	mRemapChannelLUTList
(package private) java.util.ArrayList<SlideBook7Reader.CRemapManipRecord70>	mRemapManipRecList
(package private) java.util.ArrayList<java.lang.Integer[]>	mSAPositionList
(package private) java.util.ArrayList<SlideBook7Reader.CSBPoint<java.lang.Float>>	mStagePositions

Constructor Summary

Constructors

Constructor and Description
CImageGroup(SlideBook7Reader.CSBFile70 inFile, java.lang.String inImageTitle)

Method Summary

Modifier and Type	Method and Description
java.lang.Boolean	CountImageDataFiles()
int	GetBytesPerPixel()
java.lang.String	GetChannelName(int inChannel)
int	GetElapsedTime(int inTimepoint)
int	GetExposureTime(int inChannel)
java.lang.String	GetInfo()
float	GetInterplaneSpacing()
java.lang.String	GetLensName()
double	GetMagnification()
java.lang.String	GetName()
int	GetNumChannels()
int	GetNumColumns()
int	GetNumPlanes()
int	GetNumPositions()
int	GetNumRows()
int	GetNumTimepoints()
float	GetVoxelSize()
float	GetXPosition(int inPosition)
float	GetYPosition(int inPosition)
float	GetZPosition(int inPosition, int zplane)
java.lang.Boolean	Load()
java.lang.Boolean	LoadAnnotations()
java.lang.Boolean	LoadAuxData()
java.lang.Boolean	LoadChannelRecord()
java.lang.Boolean	LoadElapsedTimes()
java.lang.Boolean	LoadImageRecord()
java.lang.Boolean	LoadMaks()
java.lang.Boolean	LoadSAPositions()
java.lang.Boolean	LoadStagePosition()

Methods inherited from class loci.formats.in.SlideBook7Reader.ClassDecoder

Decode, Decode, DecodeUnknownString, FindNextClass, GetDoubleArray, GetFloatArray, GetIntegerArray, GetIntegerValue, GetLongArray, GetSBClassName, GetStringArray, GetStringValue, RestoreSpecialCharacters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mImageDataList

java.util.ArrayList<SlideBook7Reader.CImageData> mImageDataList

mMaskPosList

java.util.ArrayList<SlideBook7Reader.CImageGroup.CMaskPositions> mMaskPosList

mAnnotationList

java.util.ArrayList<SlideBook7Reader.CImageGroup.CAnnotations> mAnnotationList

mImageRecord

SlideBook7Reader.CImageRecord70 mImageRecord

mChannelRecordList

java.util.ArrayList<SlideBook7Reader.CChannelRecord70> mChannelRecordList

mRemapChannelLUTList

java.util.ArrayList<SlideBook7Reader.CRemapChannelLUT70> mRemapChannelLUTList

mAlignManipRecordList

java.util.ArrayList<SlideBook7Reader.CAlignManipRecord70> mAlignManipRecordList

mRatioManipRecordList

java.util.ArrayList<SlideBook7Reader.CRatioManipRecord70> mRatioManipRecordList

mFRETManipRecList

java.util.ArrayList<SlideBook7Reader.CFRETManipRecord70> mFRETManipRecList

mRemapManipRecList

java.util.ArrayList<SlideBook7Reader.CRemapManipRecord70> mRemapManipRecList

mHistogramRecordList

java.util.ArrayList<SlideBook7Reader.CHistogramRecord70> mHistogramRecordList

mMaskRecordList

java.util.ArrayList<SlideBook7Reader.CMaskRecord70> mMaskRecordList

mElapsedTimes

java.lang.Integer[] mElapsedTimes

mSAPositionList

java.util.ArrayList<java.lang.Integer[]> mSAPositionList

mStagePositions

java.util.ArrayList<SlideBook7Reader.CSBPoint<java.lang.Float>> mStagePositions

mAuxFloatDataList

java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxFloatData> mAuxFloatDataList

mAuxDoubleDataList

java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxDoubleData> mAuxDoubleDataList

mAuxSInt32DataList

java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxSInt32Data> mAuxSInt32DataList

mAuxSInt64DataList

java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxSInt64Data> mAuxSInt64DataList

mAuxXmlDataList

java.util.ArrayList<SlideBook7Reader.CImageGroup.CAuxXmlData> mAuxXmlDataList

mFile

SlideBook7Reader.CSBFile70 mFile

mImageTitle

java.lang.String mImageTitle

mNpyHeader

SlideBook7Reader.CNpyHeader mNpyHeader

Constructor Detail

CImageGroup

public CImageGroup(SlideBook7Reader.CSBFile70 inFile,
                   java.lang.String inImageTitle)

Method Detail

Load

public java.lang.Boolean Load()

LoadImageRecord

public java.lang.Boolean LoadImageRecord()

CountImageDataFiles

public java.lang.Boolean CountImageDataFiles()

LoadChannelRecord

public java.lang.Boolean LoadChannelRecord()

LoadMaks

public java.lang.Boolean LoadMaks()

LoadAnnotations

public java.lang.Boolean LoadAnnotations()

LoadElapsedTimes

public java.lang.Boolean LoadElapsedTimes()

LoadSAPositions

public java.lang.Boolean LoadSAPositions()

LoadStagePosition

public java.lang.Boolean LoadStagePosition()

LoadAuxData

public java.lang.Boolean LoadAuxData()

GetNumChannels

public int GetNumChannels()

GetNumColumns

public int GetNumColumns()

GetNumRows

public int GetNumRows()

GetNumPlanes

public int GetNumPlanes()

GetNumPositions

public int GetNumPositions()

GetNumTimepoints

public int GetNumTimepoints()

GetElapsedTime

public int GetElapsedTime(int inTimepoint)

GetBytesPerPixel

public int GetBytesPerPixel()

GetName

public java.lang.String GetName()

GetInfo

public java.lang.String GetInfo()

GetChannelName

public java.lang.String GetChannelName(int inChannel)

GetLensName

public java.lang.String GetLensName()

GetMagnification

public double GetMagnification()

GetVoxelSize

public float GetVoxelSize()

GetInterplaneSpacing

public float GetInterplaneSpacing()

GetExposureTime

public int GetExposureTime(int inChannel)

GetXPosition

public float GetXPosition(int inPosition)

GetYPosition

public float GetYPosition(int inPosition)

GetZPosition

public float GetZPosition(int inPosition,
                          int zplane)