absoluteTime attribute of this <Frame>.TIFFTagSet object to the list of allowed
tag sets.TIFFTagSets of which this
directory is aware.MetadataStore object as a MetadataRetrieve.MetadataRetrieve object as a MetadataStore.BufferedImage form.boolean.decode method, in order to allow any necessary
tables or other structures to be initialized based on metadata
values.BitsPerComponentBox from the provided
byte array containing the bit depths of each color component.BitsPerComponentBox based on the provide
org.w3c.dom.Node.BitsPerSample tag.BMPImageReader from the provided
ImageReaderSpi.ImageWriteParam for encoding images in
the BMP format.BMPImageWriteParam set to use a given
Locale and with default values for all parameters.BMPImageWriteParam object with default
values for all parameters and a null Locale.BMPImageWriter based on the provided
ImageWriterSpi.ColorSpace to enable ColorModel
for image data which do not have an innate color representation.ColorSpace.Box instance using the provided
the box type and the box content in byte array format.Box instance using the provided
the box type, the box extra length, and the box content in byte
array format.Box instance from the provided
ImageInputStream at the specified position.ByteBuffer used for writing to the channel.ImageInputStream to be decompressed.true if PaletteBuilder is able to create
palette for given image type.true if PaletteBuilder is able to create
palette for given rendered image.ImageWriter can encode
the provided ImageTypeSpecifier or not.ImageWriter can encode
the provided ColorModel and SampleModel.FileChannel data source.FileChannel data destination.channel of this <File>.ChannelDefinitionBox based on the provided
ColorModel.ChannelDefinitionBox based on the provided
content in byte array.ChannelDefinitionBox based on the provided
channel definitions.ChannelDefinitionBox based on the provided
org.w3c.dom.Node.channelName attribute of this <File>.checkReadParamBandSettings.childName exists.ImageReader or
ImageWriter, parsed from a configuration file such as readers.txt
or writers.txt.param.FileChannel to null.FileChannel
to null.J2KImageWriteParam.setCodeBlockSize(int[])
(WRITE).TIFFColorConverter object describing the color space of
the encoded pixel data, or null.ColorMap tag.ColorSpecificationBox from the provided data
elements.ColorSpecificationBox from the provided byte
array.ColorSpecificationBox based on the provided
org.w3c.dom.Node.ImageInputStream and ImageOutputStream
classes for use with the Java Image I/O Framework.TIFFField with another
TIFFField by comparing the tags.ComponentMappingBox from the provided
content byte array.ComponentMappingBox from the provided
component mapping.ComponentMappingBox based on the provided
org.w3c.dom.Node.newString to the end of oldString.newString to the end of oldString.width
height
bitsPerSample
channels
interleaved
littleEndian
losslesswidth
height
channels
bitsPerSample
interleaved
littleEndian
signedsrcImage
and output a JPEG image to the given destination buffer.srcImage
and return a buffer containing a JPEG image.Compression tag.ColorModel.computeRegions.computeRegions.inData into outData.com_sun_media_imageio_plugins_tiff_image_1.0 tree to a
TIFFImageMetadata object.Stringjavax_imageio_1.0 tree to a
TIFFImageMetadata object.IFormatReader
according to the current configuration.Box object with the provided type
based on the provided Node object based on reflection.ColorModel that may be used with the
specified SampleModel.ComponentColorModel for use in creating
an ImageTypeSpecifier.TIFFDirectory instance from the contents of
an image metadata object.TIFFField from a TIFF native image
metadata node.ImagePlus from the given image processors.ImagePlus from the given image stack.img.src using IndexColorModel.PixelInterleavedSampleModel for use in creating
an ImageTypeSpecifier.Modulo.loci.formats.ome package.loci.formats.ome package.loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string.loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string.BufferedImage whose underlying data
array will be suitable for holding the raw decoded output of
the decodeRaw method.cycle of this <Sequence>.Double, or null if
incompatible.DataEntryURLBox from its content data.DataEntryURLBox from its data elements.DataEntryURLBox from a Node.DeltavisionReader.DATE_FORMATS insteadImageInputStream stream, at offset
offset, and continuing for byteCount
bytes) into the output BufferedImage
image.byte
array b, starting at the offset given by
dstOffset.short
array s, starting at the offset given by
dstOffset.int
array i, starting at the offset given by
dstOffset.float
array f, starting at the offset given by
dstOffset.lwfDecoder.decodeToMemoryGray16(short[], int, int, int, int, int, int, int, int, int, int).lwfDecoder.decodeToMemoryGray8(byte[], int, int, int).resolution).HuffmanCodecOptions, and should have the following fields set:
table
bitsPerSample
maxBytesinterleaved
littleEndianinterleaved
littleEndianinterleaved
littleEndianmaxBytesinterleaved
littleEndianmaxBytesmaxBytesMJPBCodecOptions,
and should have the following fields set:
interlaced
width
height
bitsPerSample
littleEndian
interleavedwidth
height
bitsPerSample
previousImageNikonCodecOptions, and should have the following fields set:
lossless
vPredictor
curve
split
bitsPerSample
maxBytes
width
heightmaxByteswidth
height
bitsPerSample
previousImagemaxBytes
CodecOptions.bitsPerSampleBufferedImage instance.BufferedImage instance containing the
decompressed image.Memoizer.minimumElapsed if none is provided in the
constructor.MetadataOptions.DefaultMetadataOptions.DefaultMetadataOptions.true, then all memo files will be created in the same
directory as the original file.sourceXOffset and subsampleX, to map
between horizontal source and destination pixel coordinates.sourceYOffset and subsampleY, to map
between horizontal source and destination pixel coordinates.DynamicMetadataOptions.METADATA_LEVEL_DEFAULT and file validation set to DynamicMetadataOptions.READER_VALIDATE_DEFAULT.DynamicMetadataOptions.READER_VALIDATE_DEFAULTindexth element from the given list of nodes.ImageOutputStream.srcImage
and output a YUV planar image to the given destination buffer.srcImage
and return a buffer containing a YUV planar image.Length values are equal.other have the same numerator and denominator.{'0', '2', '1',
'0'} to be used with the "EXIFVersion" tag to indicate
EXIF version 2.1.{'0', '2', '2',
'0'} to be used with the "EXIFVersion" tag to indicate
EXIF version 2.2.ExtraSamples tag.ImageInputStream using a
FileChannel as the eventual data source.FileChannelImageInputStream from a
FileChannel.ImageOutputStream using a
FileChannel as the eventual data destination.FileChannelImageOutputStream from a
FileChannel.filename attribute of this <File>.FilePattern.<File> elements beneath this <Frame>, keyed on each
file's channel.FileTypeBox from the provided brand, minor
version and compatibility list.FileTypeBox from the provided byte array.FileTypeBox from
org.w3c.dom.Node.FilePattern.findSeriesPatterns(String, String, String[]),
but dir and nameList are inferred from the given file's absolute
path.FilePattern.findPattern(String, String, String[]), but
this does not merge series indices into a pattern block.<File> element for this <Frame>.<Frame> element for this <Sequence>.<Sequence> element.FormatReader.updateMetadataLists(Hashtable) on
all metadata hashtables.FileChannel any remaining bytes in
the byte output buffer.J2KMetadataFormat<Frame> element.<Frame> containing this <File>.<Frame> elements beneath this <Sequence>, keyed on each
frame's index.Frames as time points rather than focal
planes (i.e., sizeZ and sizeT values inverted).<Frame>.result array.name.name.abortRequested
to allow the abortions be monitored by J2KReadState.abortRequested
to allow the abortions be monitored by J2KRenderedImage.abortRequested
to allow the abortions be monitored by J2KReadState.absoluteTime associated with this Frame.AcquisitionMode enumeration
value for the given String.alignROIList containing the allowed
TIFFTagSet objects.ApproximationAccuracy.ArcType enumeration
value for the given String.bytes.TIFFTag.TIFF_SHORT data as an array of
chars (unsigned 16-bit integers).double.TIFFTag.TIFF_DOUBLE data as an array of
doubles (64-bit floating-point values).float.TIFFTag.TIFF_FLOAT data as an array of
floats (32-bit floating-point values).int.TIFFTag.TIFF_SLONG data as an array of
ints (signed 32-bit integers).long.TIFFTag.TIFF_LONG or
TIFF_IFD_POINTER data as an array of
longs (signed 64-bit integers).TIFFField as a node named either
"TIFFField" or "TIFFIFD" as described in the
TIFF native image metadata specification.TIFFTag.TIFF_RATIONAL data as an array of
2-element arrays of longs.TIFFTag.TIFF_SSHORT data as an array of
shorts (signed 16-bit integers).TIFFTag.TIFF_SRATIONAL data item as a
two-element array of ints.TIFFTag.TIFF_SRATIONAL data as an array of
2-element arrays of ints.TIFFTag.TIFF_ASCII value as a
String.ImportStep.READER.Binning enumeration
value for the given String.bitDepth recorded in the configuration.name as a Boolean.name as a Boolean.type.bypassIIOMetadataNode.IIOMetadataNode.causalCXInfoImportStep.SERIES.ImportStep.STACK.channel associated with this File.ImportStep.STACK.channelName associated with this File.ImportStep.STACK.name as a class.name as a class.CodedEnum I/F.CodedEnum I/F.CodedEnum I/F.codeBlockSize.codeBlockSizecodeSegSymbolTIFFColorConverter object,
or null if none is set.TIFFColorConverter object that
will be used to perform color conversion when writing the
image, or null if none is set.componentTransformation.componentTransformationCompression enumeration
value for the given String.value of the given configuration key.ContrastMethod enumeration
value for the given String.Correction enumeration
value for the given String.ImportStep.STACK.ImportStep.STACK.cycle associated with this Sequence.dataType
which must be one of the DataBuffer TYPEs.decodingRate.decompositionLevelKryo instance.DetectorType enumeration
value for the given String.DimensionOrder enumeration
value for the given String.ImportStep.STACK.TIFFDirectory to a TIFFIFD.name as a Double.name as a Double.encodingRate.encodingRatename as an enumerated type.EPH.EPHExperimentType enumeration
value for the given String.FilamentType enumeration
value for the given String.name as a file object.name as a file object.File with the given channel.Frame at the given (cycle, index,
channel).Frame at the given (cycle, index,
channel).filename associated with this File.ImportStep.STACK.FillRule enumeration
value for the given String.filters.filtersFilterType enumeration
value for the given String.File of the Sequence.Frame of the Sequence.Sequence.Flags data element.name as a Float.name as a Float.FontFamily enumeration
value for the given String.FontStyle enumeration
value for the given String.Frame at the given (cycle and index).<Frame> containing this <File>.Frame with the given index.cth gain for this Frame.guardBitslwfDecoder.getHeight()ImportStep.READER.ImportStep.READER.IlluminationType enumeration
value for the given String.imageIndexth image.ImageInputStream for reading.imageIndexth image.ImportStep.READER.Frame.Immersion enumeration
value for the given String.index associated with this Frame.Sequence.BaselineTIFFTagSet.EXIFGPSTagSet.EXIFInteroperabilityTagSet.EXIFParentTIFFTagSet.EXIFTIFFTagSet.FaxTIFFTagSet.GeoTIFFTagSet.IIOMetadataNode.name as an Integer.name as an Integer.IIOMetadataNode.IntellectualProperty flag.LaserMedium enumeration
value for the given String.laserPower recorded in the configuration.LaserType enumeration
value for the given String.layersString representing a single letter (in the case
where the class instance has been initialized with a resource count lower
than 26) or a concatenation of two letters (if resource count is higher
than 26).Frame.Location instance using the provided parent path and
child node name.name as a Long.name as a Long.lossless.encodingRateIndexColorModel as an two-dimensional
byte array.MappedByteBuffer which memory maps
at least from the channel position corresponding to the
current stream position to len bytes beyond.Marker enumeration
value for the given String.Medium enumeration
value for the given String.File object from id string.IIOMetadata object.FormatReader.getMetadataStore() method.FormatReader.getMetadataStore() method.methodForMQLengthCalcmethodForMQTerminationMicrobeamManipulationType
enumeration value for the given String.Frame.Frame.MicroscopeType enumeration
value for the given String.ImportStep.STACK.minXminYModulo corresponding to the given ModuloAlong* tag.type.NamingConvention enumeration
value for the given String.IFormatReader.openPlane(int, int, int, int, int) or IFormatWriter.savePlane(int, java.lang.Object).IIOMetadataNode from this
box.IIOMetadataNode from this channel definition
box.IIOMetadataNode from this color specification
box.IIOMetadataNode from this component mapping
box.IIOMetadataNode from this data entry URL
box.IIOMetadataNode from this file type box.IIOMetadataNode from this image header box.IIOMetadataNode from this palette box.IIOMetadataNode from this resolution
box.IIOMetadataNode from this signature
box.IIOMetadataNode from this UUID
box.IIOMetadataNode from this UUID list
box.IIOMetadataNode from this XML
box.IIOMetadataNode from this
box.noROIDescalingnumDecompositionLevels.ImageInputStream.TIFFFields in this directory.Frame.Frame.cth offset for this Frame.OMEXMLMetadata object with the same
contents as the given MetadataRetrieve, converting it if necessary.ImportStep.READER.ImportStep.READER.Frame.ImportStep.METADATA.isBinary() returns
true), return the binary data as a packed byte array.packetPerTilePartpackPacketHeaderInMainpackPacketHeaderInTileTIFFTag of this directory if one
has been defined or null otherwise.parsingEnabledPrairieMetadata.PFile.Photometricinterpretation tag.Frame.PixelType enumeration
value for the given String.Integer.MAX_VALUE.Frame.Frame.Frame.Precedence.precinctPartitionprogressionTypeprogressionType.progressionTypeStrings recognized as names by
this property source that begin with the supplied prefix.Pulse enumeration
value for the given String.quantizationStepquantizationTyperaw parameter.ImageTypeSpecifier describing an image
whose underlying data array has the same format as the raw
source pixel data.ImageTypeSpecifier suitable for decoding an image
with the given parameters.ImportStep.STACK.relativeTime associated with this Frame.resetMQresolution.ROIsAffineTransform corresponding to
the given angle.dimension.<Sequence> containing this <Frame>.Sequence at the given cycle.Sequences, ordered by cycle.ImportStep.STACK.ImportStep.STACK.TIFFIFD wherein all fields from the
BaselineTIFFTagSet are copied by value and all other
fields copied by reference.TIFFImageMetadata wherein all fields in the
root IFD from the BaselineTIFFTagSet are copied by value
and all other fields copied by reference.IIOMetadataNode.SOP.SOPImportStep.STACK.startLevelImageOutputStream that will be written.StreamSegment object indicating the
location of the initial portion of a desired segment in the
source stream.StreamSegment object
indicating the location of the initial portion of a desired
segment in the source stream.String value from an IIOMetadataNode.TIFFTag which has tag number equal to
tagNumber or null if no such tag
exists in the TIFFTagSets associated with this
directory.TIFFTag from this set that is
associated with the given tag number, or null if
no tag exists for that number.TIFFTag having the given tag name, or
null if the named tag does not belong to this tag set.[0, 65535].TIFFTagSet of which this tag is a part.TIFFTagSets of which this directory is aware.ImportStep.SERIES.ImportStep.STACK.terminateOnByteTIFFCompressor that is currently set
to be used by the ImageWriter to encode each image
strip or tile, or null if none has been set.TIFFDecompressor that is currently set
to be used by the ImageReader to decode each image
strip or tile, or null if none has been set.transform().type associated with this Sequence.UnknowColorspace flag.URL data element.value of the given key, beneath this
Frame, inferring the value from the parent <Sequence>
or grandparent <PVScan> section as needed.value of the given key, at the top-level
<PVScan> element.value of the given key, beneath this
Sequence, inferring the value from the parent <PVScan>
section as needed.String containing a human-readable
version of the data item.null if
no name is present.Frame key/value pairs.PVScan key/value pairs.Frame key/value pairs.Version data element.ImportStep.STACK.waitTime recorded in the configuration.wavelengthMax associated with this File.wavelengthMin associated with this File.lwfDecoder.getWidth()writeCodeStreamOnly.ImageWriter.ImportStep.SERIES.ImportStep.STACK.
IIOMetadata for subclass use.{'2', '2', '0',
'0'} to be used with the "GPSVersionID" tag to indicate
GPS version 2.2.IFormatReader instance that is passed in or null if
it has been invalidated, which will include the instance being closed.true if there are mnemonic names associated with
the set of legal values for the data associated with this tag.Integer tag numbers to TIFFFields
for fields which are not low tag numbered.Integer, or null if incompatible.IFDs.ImageInputStream that is wrappedImageInputStream into a
RandomAccessIO.RandomAccessIO instance from the supplied
ImageInputStream.FilePatternBlock encounters an
invalid pattern.ImageInputStream into
a InputStream.ImageInputStreamWrapper from the provided
ImageInputStream.ImagePlus objects.ImageProcessor objects.BufferedImage for this
FormatHandler.currentId.index of this <Frame>.lwfDecoder.lwfDecoder(InputStream, String, String).BaseTiffReader.initStandardMetadata() along with some further parsing done in
the method itself.raster rather than a RenderedImage
to be encoded.DataBuffer is filled without
any interspersed padding bits.true if the given data type
may be used for the data associated with this tag.IFormatReader.isIndexed() is false, or if IFormatReader.isIndexed()
is true and the lookup table represents "real" color data.true if this tag is used to point to an IFD
structure containing additional tags.colorModel is a
IndexColorModelReaderWrapper.reader instance currently active was loaded
from the memo file during Memoizer.setId(String).true if the given ColorSpace object
is an instance of ICC_ColorSpace but is not one of the
standard ColorSpaces returned by
ColorSpace.getInstance().IFormatReader.openBytes(int) call.ReaderWrapper.reader instance currently active was saved
to the memo file during Memoizer.setId(String).Sequence should be considered a time series.topDown parameter.Iterator over the TIFF fields.J2KImageReader from the provided
ImageReaderSpi.ImageReadParam for reading images in
the JPEG 2000 format.J2KImageReadParam.ImageReadParam for reading images in
the JPEG 2000 format.J2KImageReadParamJava.ImageWriteParam for writing images in
the JPEG 2000 format.Locale.J2KImageWriteParam object with default
values for all parameters.ImageWriteParam for writing images in
the JPEG 2000 format.J2KImageWriteParamJava object with default
values for all parameters.J2KImageWriteParamJava object with default
values for all parameters.J2KImageWriteParamJava object with default
values for all parameters.J2KImageWriter based on the provided
ImageWriterSpi.J2KMetadata object appropriate
for the given write parameters.J2KMetadata object appropriate
for the given image type and write parameters.J2KMetadata object appropriate
for the given image type and write parameters.J2KMetadataFormat.J2KReadState.J2KReadState.JPEGTables.FileChannel.FileChannel.ReaderWrapper.reader instance currently active was loaded from
the memo file during Memoizer.setId(String).Logger for the memoizer classrows * cols
components of parent in
a grid.rows * cols
components of parent in
a grid.MDBService for parsing MDB database files.ReaderWrapper implementation which caches the state of the
delegate (including and other ReaderWrapper instances)
after Memoizer.setId(String) has been called.ImageReader creating memo
files under the same directory as the original file only if the call to
Memoizer.setId(java.lang.String) takes longer than 100L in
milliseconds.ImageReader creating memo
files under the same directory as the original file only if the call to
Memoizer.setId(java.lang.String) takes longer than minimumElapsed in milliseconds.ImageReader creating memo file
files under the directory argument including the full path of the
original file only if the call to Memoizer.setId(java.lang.String) takes longer than
minimumElapsed in milliseconds.IFormatReader creating
memo files under the same directory as the original file only if the
call to Memoizer.setId(java.lang.String) takes longer than
100L in milliseconds.IFormatReader creating
memo files under the same directory as the original file only if the
call to Memoizer.setId(java.lang.String) takes longer than minimumElapsed in
milliseconds.IFormatReader creating
memo files under the directory argument including the full path
of the original file only if the call to Memoizer.setId(java.lang.String) takes longer than
minimumElapsed in milliseconds.Memoizer.Deser
classes for libraries working solely with byte arrays.IIOMetadata object containing metadata for the
current image.IIOMetadata object containing metadata for the
current image.MetadataStore, MetadataRetrieve,
and OME-XML strings.Memoizer.setId(java.lang.String) before a memo file will be created.maxOffset or offset of first pixel
different from pixel at bitOffset.J2KImageWriteParam.setNumDecompositionLevels(int)
(WRITE).ImageInputStream of the
start of the data to be decompressed.OP_*)ImagePlus objects
corresponding to the reader's associated options.IFormatReader.openThumbBytes(int).TJTransformer.transform() from outputting a JPEG image for this
particular transform.TJTransformer.transform() to throw an exception if the transform is not
perfect.OPT_*)srcHeight.srcMinX.srcMinY.srcWidth.PlatteBox from an
IndexColorModel.PlatteBox from an
org.w3c.dom.Node.PlatteBox from the provided length, bit
depths of the color components and the LUT.PlatteBox from the provided byte array.ImageReadParam to create this
renderedImage.TIFFTag of this directory.Frame element.File element.Sequence element.attributeList and variableList.PrairieMetadata.activeChannels
data structure from the "channel" entry of the configuration.Document from the data in the given file.<Key> elements beneath the given element, into the specified
table.PrairieReader.meta.<PVStateShard> element beneath the given element, into
the specified table.double to a PositiveFloat, or
null if incompatible.<File> element.PhotometricInterpretation tag.true if the image is encoded using separate planes.PNMImageReader from the provided
ImageReaderSpi.ImageWriteParam for writing images in
the PNM format.PNMImageWriteParam object with default values
for parameters.PNMImageWriter based on the provided
ImageWriterSpi.PNMMetadata object appropriate
for the given image type and write parameters.PNMMetadataFormat.CoreMetadata by extracting relevant values
from the parsed PrairieReader.meta structure.CoreMetadata values.MetadataStore, for the specified series, using
the values from the provided CoreMetadata.MetadataStore, for the specified series, using
the provided values.MetadataStore, for the specified series, using
the provided values.MetadataStore by extracting relevant
values from the parsed PrairieReader.meta structure.FormatReader.getGlobalMetadata() and FormatReader.getSeriesMetadata()).<Frame>, beneath a <Sequence>.<File> beneath a <Frame>.<Sequence>.PrairieMetadata.ValueItem.value() as well as an optional
PrairieMetadata.ValueItem.description().processImageProgress
So it can be access from the classes which are not in
ImageReader hierarchy.processImageProgress
So it can be access from the classes which are not in
ImageWriter hierachy.processImageProgress
So it can be access from the classes which are not in
ImageReader hierachy.processImageUpdate
So it can be access from the classes which are not in
ImageReader hierarchy.processImageUpdate
So it can be access from the classes which are not in
ImageReader hierachy.ImageWriteParam.compressionQuality (WRITE).BufferedImage for the decodeRaw
method to write into.ImageInputStream
containing several raw images with the same image type: the number of
the images, the image type, the offset for the first sample of each image,
and the image size information.RawImageReader from the provided
ImageReaderSpi.ImageWriteParam for writing images in
the RAW format.RawImageWriter based on the provided
ImageWriterSpi.len bytes of data from the input stream into
an array of bytes.ImageInputStream
- read() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- read() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- read(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- read(byte[], int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- read(Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- read(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- read() - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Reads the next byte of data from this input stream.
- read() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Reads an unsigned byte of data from the stream.
- read() - Method in interface jj2000.j2k.io.RandomAccessIO
-
Reads a byte of data from the stream.
- read() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads a byte of data from the stream.
- read(int, byte[]) - Method in class loci.formats.in.AmiraReader.ASCII
-
- read(byte[], int) - Method in class loci.formats.in.AmiraReader.HxRLE
-
- read(int, byte[]) - Method in class loci.formats.in.AmiraReader.HxRLE
-
- read(int, byte[]) - Method in class loci.formats.in.AmiraReader.HxZip
-
- read(int, byte[]) - Method in interface loci.formats.in.AmiraReader.PlaneReader
-
- read() - Method in class loci.formats.in.APNGReader.PNGInputStream
-
- read(byte[], int, int) - Method in class loci.formats.in.APNGReader.PNGInputStream
-
- read() - Method in class loci.formats.in.ZeissLSMReader.BeamSplitter
-
- read() - Method in class loci.formats.in.ZeissLSMReader.DataChannel
-
- read() - Method in class loci.formats.in.ZeissLSMReader.DetectionChannel
-
- read() - Method in class loci.formats.in.ZeissLSMReader.IlluminationChannel
-
- read() - Method in class loci.formats.in.ZeissLSMReader.Laser
-
- read() - Method in class loci.formats.in.ZeissLSMReader.Recording
-
- read() - Method in class loci.formats.in.ZeissLSMReader.SubBlock
-
- read() - Method in class loci.formats.in.ZeissLSMReader.Track
-
- read(Kryo, Input) - Method in class loci.formats.services.NetCDFServiceImpl
-
- read16Bit(short[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- read1Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- read1Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- read24Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- read32Bit(int[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- read4Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- read4Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- read8Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- read8Bit(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- readAborted(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- readAbsoluteZValid() - Method in class loci.formats.in.MetamorphReader
-
- readAndBuffer(BufferedRandomAccessFile) - Method in class jj2000.j2k.util.CodestreamManipulator
-
This method reads and buffers the tile headers, packet headers and
packet data.
- readArea(Element, int, double, double, int, int) - Method in class loci.formats.in.CellVoyagerReader
-
- readAsRaster() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- readAsRaster(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- readAsRenderedImage(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- readAsRenderedImage(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- readAsRenderedImage(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- readAttachments() - Method in class loci.formats.in.ZeissCZIReader
-
- readBit() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readBit() - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Reads a single bit from the input.
- readBit() - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput
-
Reads from the bit stream one bit.
- readBits(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readBits(int) - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Reads a specified number of bits and returns them in a single
integer.
- readBitsPerComponentBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Read the bits per component.
- readBlock() - Method in class loci.formats.in.GIFReader
-
Reads the next variable length block.
- readBoolean() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readBufferedImage() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- readByte() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readByte() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read a signed byte (i.e., 8 bit) from the input.
- readByte() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Reads a signed byte (i.e., 8 bit) from the input.
- readByte() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads a signed byte (8 bit) from the input.
- readByte() - Method in class loci.formats.in.APNGReader.PNGInputStream
-
- readByte() - Method in class loci.formats.tools.AmiraParameters
-
- readByteArray(String) - Method in interface loci.formats.services.JHDFService
-
Reads a multi-dimensional byte array from path.
- readByteArray(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- readByteBlockArray(String, int[], int[]) - Method in interface loci.formats.services.JHDFService
-
Reads a multi-dimensional sub-block byte array from path.
- readByteBlockArray(String, int[], int[]) - Method in class loci.formats.services.JHDFServiceImpl
-
- readBytes(IIOByteBuffer, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readBytes(int, byte[], int, int, int, int) - Method in interface loci.formats.services.WlzService
-
Reads a rectangle of bytes in an x-y plane from the opened Woolz
object.
- readBytes(int, byte[], int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl
-
- readBytes2DDomObj(byte[], int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl
-
- readBytes3DDomObj(byte[], int, int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl
-
- readChannel(Element) - Method in class loci.formats.in.CellVoyagerReader
-
- readChannelDefinitionBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the Channel Definition box
- readChar() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readChecked() - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Reads the next byte of data from this input stream.
- readChunk() - Method in class loci.formats.in.AVIReader
-
- readChunkHeader() - Method in class loci.formats.in.AVIReader
-
- readCOC(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads the COC marker segment and realigns the codestream where the next
marker should be found.
- readCOD(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads a COD marker segment and realigns the codestream where the next
marker should be found.
- readColourSpecificationBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Read the color specifications.
- readCOM(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads a COM marker segments and realigns the bit stream at the point
where the next marker segment should be found.
- readComments(ImageInputStream, PNMMetadata) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
Reads the comments.
- readComponentMappingBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Read the component mapping channel.
- readCompoundArrayDataMap(String) - Method in interface loci.formats.services.JHDFService
-
Reads Compound array of any type
- readCompoundArrayDataMap(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- readCompPosResLy(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Reads packets of the current tile according to the
component-position-resolution-layer progressiveness.
- readContiguousCodeStreamBox(int, long) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method skips the Contiguous codestream box and adds position
of contiguous codestream to a vector
- readCRG(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads a CRG marker segment and checks its length.
- readCString() - Method in class loci.formats.in.OpenlabReader
-
- readCString() - Method in class loci.formats.in.SlidebookReader
-
- readDate() - Method in class loci.formats.in.OxfordInstrumentsReader
-
- readDouble() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readDouble() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readDouble() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Reads an IEEE double precision (i.e., 64 bit) floating-point number
from the input.
- readDouble() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read an IEEE double precision (i.e., 64 bit)
floating-point number from the input.
- readDouble() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads an IEEE double precision (i.e., 64 bit) floating-point number
from the input.
- readDoubleArray(int) - Method in class loci.formats.tools.AmiraParameters
-
- readEmbedded(int, BufferedImage, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
Decodes the jpeg/png image embedded in the bitmap using any jpeg
ImageIO-style plugin.
- readEntry() - Method in class loci.formats.in.ZeissLSMReader
-
- readEPHMarker(PktHeaderBitReader) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Try to read an EPH marker.
- reader - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The
ImageReader calling this
TIFFDecompressor.
- reader - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Cache the
J2KImageReader which creates this object.
- reader - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
Caches the
RawImageReader which creates this object.
- reader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- reader - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- reader - Variable in class loci.formats.cache.CacheSource
-
Reader from which to draw image planes.
- reader - Variable in class loci.formats.FileInfo
-
IFormatReader implementation that would be used to read this file.
- reader - Variable in class loci.formats.gui.BufferedImageSource
-
Image reader from which to draw BufferedImages.
- reader - Variable in class loci.formats.gui.DataConverter
-
- reader - Variable in class loci.formats.gui.FormatFileFilter
-
Associated file format reader.
- reader - Variable in class loci.formats.gui.PreviewPane
-
Reader for use when loading thumbnails.
- reader - Variable in class loci.formats.in.AFIReader
-
- reader - Variable in class loci.formats.in.BDReader
-
- reader - Variable in class loci.formats.in.ColumbusReader
-
- reader - Variable in class loci.formats.in.L2DReader
-
- reader - Variable in class loci.formats.in.OMETiffReader.OMETiffPlane
-
Reader to use for accessing this plane.
- reader - Variable in class loci.formats.in.OperettaReader
-
- reader - Variable in class loci.formats.in.PCORAWReader
-
- reader - Variable in class loci.formats.in.ScanrReader
-
- reader - Variable in class loci.formats.in.ZeissTIFFHandler
-
- reader - Variable in class loci.formats.in.ZipReader
-
- reader - Variable in class loci.formats.ReaderWrapper
-
FormatReader used to read the file.
- reader - Variable in class loci.formats.services.MetakitServiceImpl
-
- reader - Variable in class loci.plugins.config.FormatEntry
-
- reader - Variable in class loci.plugins.in.ImportProcess
-
- reader - Variable in class loci.plugins.util.BFVirtualStack
-
- reader - Variable in class loci.plugins.util.ImageProcessorSource
-
Image reader from which to draw ImageProcessors.
- READER_VALIDATE_DEFAULT - Static variable in class loci.formats.in.DynamicMetadataOptions
-
- READER_VALIDATE_KEY - Static variable in class loci.formats.in.DynamicMetadataOptions
-
- readerClassName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- readerFromBytes(Class<IFormatReader>, byte[]) - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- readerName - Variable in class loci.plugins.config.FormatEntry
-
- readers - Variable in class loci.formats.FileStitcher.ExternalSeries
-
- readers - Variable in class loci.formats.ImageReader
-
List of supported file format readers.
- readers - Variable in class loci.formats.in.ImprovisionTiffReader
-
- readers - Variable in class loci.formats.in.MIASReader
-
Delegate readers.
- readers - Variable in class loci.formats.in.NDPISReader
-
- readers - Variable in class loci.formats.in.ScreenReader
-
- readers - Variable in class loci.formats.in.SlidebookTiffReader
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- readerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- ReaderWrapper - Class in loci.formats
-
Abstract superclass of reader logic that wraps other readers.
- ReaderWrapper() - Constructor for class loci.formats.ReaderWrapper
-
Constructs a reader wrapper around a new image reader.
- ReaderWrapper(IFormatReader) - Constructor for class loci.formats.ReaderWrapper
-
Constructs a reader wrapper around the given reader.
- readExtraMetadata(MetadataStore) - Method in class loci.formats.in.KodakReader
-
- readField(Element) - Method in class loci.formats.in.CellVoyagerReader
-
- readFile(String) - Method in class loci.formats.in.TextReader
-
- readFile(String) - Method in class loci.formats.tools.AmiraParameters
-
- readFile(RandomAccessInputStream) - Method in class loci.formats.tools.AmiraParameters
-
- readFileFormat() - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method checks whether the given RandomAccessIO is a valid JP2 file
and if so finds the first codestream in the file.
- readFileInfoMetadata(MetadataStore) - Method in class loci.formats.in.KodakReader
-
- readFileTypeBox(int, long) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the File Type box
- readFilter(DataInputStream, int[]) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads a wavelet filter from the codestream and returns the filter
object that implements it.
- readFloat() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFloat() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readFloat() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Reads an IEEE single precision (i.e., 32 bit) floating-point number
from the input.
- readFloat() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read an IEEE single precision (i.e., 32 bit)
floating-point number from the input.
- readFloat() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads an IEEE single precision (i.e., 32 bit) floating-point number
from the input.
- readFoundMainMarkSeg() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Retrieves and reads all marker segments found in the main header during
the first pass.
- readFoundTilePartMarkSeg(int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Return the DecoderSpecs instance filled when reading the headers
Retrieves and reads all marker segments previously found in the
tile-part header.
- readFrameInterval(Document) - Method in class loci.formats.in.CellVoyagerReader
-
- readFromOverlays() - Static method in class loci.plugins.util.ROIHandler
-
Returns rois if any from the overlay.
- readFromRoiManager() - Static method in class loci.plugins.util.ROIHandler
-
Returns the rois if any stored in the ROI manager.
- readFully(char[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
- readFully(short[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
- readFully(int[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
- readFully(long[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
- readFully(float[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
- readFully(double[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
- readFully(char[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- readFully(short[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- readFully(int[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- readFully(long[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- readFully(float[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- readFully(double[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- readFully(byte[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(byte[]) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(short[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(char[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(int[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(long[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(float[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(double[], int, int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readFully(byte[], int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readFully(byte[], int, int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Reads up to len bytes of data from this file into an array of
bytes.
- readFully(byte[], int, int) - Method in interface jj2000.j2k.io.RandomAccessIO
-
Reads up to len bytes of data from this file into an array of
bytes.
- readFully(byte[], int, int) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads 'len' bytes of data from this file into an array of bytes.
- readHeader() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- readHeader() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- readHeader() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- readHeader() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- readHeader() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- readHeader() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- readHeaderInt() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns an int read from the header of the PGM file.
- readIFD(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- readImage(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- readImage(long) - Method in class loci.formats.in.MNGReader
-
- readImage(InputStream, JPEG2000CodecOptions) - Method in interface loci.formats.services.JAIIIOService
-
Reads an image using JAI Image I/O using the JPEG 2000 codec.
- readImage(InputStream) - Method in interface loci.formats.services.JAIIIOService
-
Reads an image using JAI Image I/O using the JPEG 2000 codec.
- readImage(InputStream, JPEG2000CodecOptions) - Method in class loci.formats.services.JAIIIOServiceImpl
-
- readImage(InputStream) - Method in class loci.formats.services.JAIIIOServiceImpl
-
- readImage(int, boolean) - Method in class loci.plugins.in.ImagePlusReader
-
- readImageBlock() - Method in class loci.formats.in.GIFReader
-
- readImageHeader(int) - Method in class loci.formats.in.PictReader
-
- readImageHeaderBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the Image Header box
- readImages() - Method in class loci.plugins.in.ImagePlusReader
-
- readImages(boolean) - Method in class loci.plugins.in.ImagePlusReader
-
- readInfo(Document, Document) - Method in class loci.formats.in.CellVoyagerReader
-
- readInput() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads data from the wrapped InputStream and places it in the cache
buffer.
- readInt() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readInt() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readInt() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Reads a signed int (i.e., 32 bit) from the input.
- readInt() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read a signed int (i.e., 32 bit) from the input.
- readInt() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads a signed int (32 bit) from the input.
- readIntArray(String) - Method in interface loci.formats.services.JHDFService
-
Reads a multi-dimensional int array from path.
- readIntArray(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- readIntArray() - Method in class loci.formats.tools.AmiraParameters
-
- readIntArray(int) - Method in class loci.formats.tools.AmiraParameters
-
- readIntBlockArray(String, int[], int[]) - Method in interface loci.formats.services.JHDFService
-
Reads a multi-dimensional sub-block int array from path.
- readIntBlockArray(String, int[], int[]) - Method in class loci.formats.services.JHDFServiceImpl
-
- readInteger(ImageInputStream) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
Reads the next integer.
- readIntPropertyBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the contents of the Intellectual property box
- readJP2HeaderBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the JP2Header box
- readKey() - Method in class loci.formats.tools.AmiraParameters
-
- readLine() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readLine() - Method in class loci.formats.in.EPSReader
-
- readLong() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readLong() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readLong() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Reads a signed long (i.e., 64 bit) from the input.
- readLong() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read a signed long (i.e., 64 bit) from the input.
- readLong() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads a signed long (64 bit) from the input.
- readLookupTables(RandomAccessInputStream) - Method in class loci.formats.in.BioRadReader
-
Read all lookup tables from the given file into the 'lut' variable.
- readLut(int) - Method in class loci.formats.in.GIFReader
-
Read a color lookup table of the specified size.
- readLyResCompPos(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Reads packets of the current tile according to the
layer-resolution-component-position progressiveness.
- readMap() - Method in class loci.formats.tools.AmiraParameters
-
- readMetadata() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- readMetaData(String) - Method in class loci.formats.in.BDReader
-
- readMetadataFile() - Method in class loci.formats.in.OMETiffReader
-
Extracts the OME-XML from the current
OMETiffReader.metadataFile.
- readMultiByteInteger(ImageInputStream) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
- readNewBuffer(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Reads a new buffer from the file.
- readNotes(RandomAccessInputStream, boolean) - Method in class loci.formats.in.BioRadReader
-
Read all of the note strings from the given file.
- readNumber() - Method in class loci.formats.tools.AmiraParameters
-
- readNumberArray() - Method in class loci.formats.tools.AmiraParameters
-
- readNumberString() - Method in class loci.formats.in.AmiraReader.ASCII
-
- READOUT_TIME - Static variable in class loci.formats.in.FluoviewReader
-
- readOutRate - Variable in class loci.formats.in.MetamorphHandler
-
- readoutTime - Variable in class loci.formats.in.FluoviewReader
-
- readPaletteBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the content of the palette box
- readPixelBlock(long) - Method in class loci.formats.in.OIRReader
-
- readPixelData() - Method in class loci.formats.in.ZeissCZIReader.SubBlock
-
- readPixelData(RandomAccessInputStream) - Method in class loci.formats.in.ZeissCZIReader.SubBlock
-
- readPixelData(RandomAccessInputStream, Region, byte[]) - Method in class loci.formats.in.ZeissCZIReader.SubBlock
-
- readPixels(byte[], RandomAccessInputStream, ZipInputStream, int) - Method in class loci.formats.in.SDTReader
-
- readPixels(ImagePlusReader, ImporterOptions, DisplayHandler) - Method in class loci.plugins.in.Importer
-
- readPktBody(int, int, int, int, CBlkInfo[][][], int[]) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Reads specificied packet body in order to find offset of each
code-block's piece of codeword.
- readPktHead(int, int, int, int, CBlkInfo[][][], int[]) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Read specified packet head and found length of each code-block's piece
of codewords as well as number of skipped most significant bit-planes.
- readPlane(RandomAccessInputStream, int, int, int, int, byte[]) - Method in class loci.formats.FormatReader
-
Reads a raw plane from disk.
- readPlane(RandomAccessInputStream, int, int, int, int, int, byte[]) - Method in class loci.formats.FormatReader
-
Reads a raw plane from disk.
- readPlaneData() - Method in class loci.formats.in.MetamorphReader
-
- readPlanes(ImportProcess, int, List<LUT>, boolean) - Method in class loci.plugins.in.ImagePlusReader
-
- readPLM(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads PLM marker segment and realigns the codestream where the next
marker should be found.
- readPLTFields(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads the PLT fields and realigns the codestream where the next marker
should be found.
- readPOC(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads the POC marker segment and realigns the codestream where the next
marker should be found.
- readPosCompResLy(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Reads packets of the current tile according to the
position-component-resolution-layer progressiveness.
- readPPM(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads the PPM marker segment of the main header.
- readPPT(DataInputStream, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Teads the PPT marker segment of the main header.
- readProcessors(ImportProcess, int, Region, boolean) - Method in class loci.plugins.in.ImagePlusReader
-
HACK: This method mainly exists to prompt the user for a missing
LuraWave license code, in the case of LWF-compressed Flex.
- readQCC(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads a QCC marker segment and realigns the codestream at the point
where the next marker should be found.
- readQCD(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads a QCD marker segment and realigns the codestream at the point
where the next marker should be found.
- readQuotedString() - Method in class loci.formats.tools.AmiraParameters
-
- readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- readRaster(int, ImageReadParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- readRaster(InputStream, JPEG2000CodecOptions) - Method in interface loci.formats.services.JAIIIOService
-
Reads an image into a raster using JAI Image I/O using the JPEG 2000 codec.
- readRaster(InputStream) - Method in interface loci.formats.services.JAIIIOService
-
Reads an image into a raster using JAI Image I/O using the JPEG 2000 codec.
- readRaster(InputStream, JPEG2000CodecOptions) - Method in class loci.formats.services.JAIIIOServiceImpl
-
- readRaster(InputStream) - Method in class loci.formats.services.JAIIIOServiceImpl
-
- readRational(RandomAccessInputStream) - Method in class loci.formats.in.MetamorphReader
-
- readRational(RandomAccessInputStream, long) - Method in class loci.formats.in.MetamorphReader
-
- readRationals(String[]) - Method in class loci.formats.in.MetamorphReader
-
- readResLyCompPos(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Reads packets of the current tile according to the
resolution-layer-component-position progressiveness.
- readResolutionBox(int, int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Read the resolution.
- readResPosCompLy(int[][], int, int, int, int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Reads packets of the current tile according to the
resolution-position-component-layer progressiveness.
- readRGN(DataInputStream, boolean, int, int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads the RGN marker segment of the codestream header.
- readRLE4(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- readRLE8(byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- readScanLine(byte[]) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- readSegment(String) - Method in class loci.formats.in.ZeissCZIReader
-
- readSegments(String) - Method in class loci.formats.in.ZeissCZIReader
-
- readShort() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readShort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readShort() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Reads a signed short (i.e., 16 bit) from the input.
- readShort() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read a signed short (i.e., 16 bit) from the input.
- readShort() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads a signed short (16 bit) from the input.
- readShortBlockArray(String, int[], int[]) - Method in interface loci.formats.services.JHDFService
-
Reads a multi-dimensional sub-block short array from path.
- readShortBlockArray(String, int[], int[]) - Method in class loci.formats.services.JHDFServiceImpl
-
- readSIZ(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads the SIZ marker segment and realigns the codestream at the point
where the next marker segment should be found.
- readSOPMarker(int[], int, int, int) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Try to read a SOP marker and check that its sequence number if not out
of sequence.
- readSpecialPixels(byte[]) - Static method in class loci.formats.in.FakeReader
-
Read byte-encoded metadata from the given plane.
- readSpecialPixels(byte[], int, boolean) - Static method in class loci.formats.in.FakeReader
-
Read byte-encoded metadata from the given plane.
- readSpecialPixels(byte[], int, boolean, int, boolean) - Static method in class loci.formats.in.FakeReader
-
Read byte-encoded metadata from the given plane.
- readStackHeader() - Method in class loci.formats.in.ImspectorReader
-
Read the header for an image stack.
- readStageLabels() - Method in class loci.formats.in.MetamorphReader
-
- readStagePositions() - Method in class loci.formats.in.MetamorphReader
-
- readStamps() - Method in class loci.formats.in.FluoviewReader
-
- readState - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
The J2KReadState for this reading session based on the current input
and J2KImageReadParam.
- readState - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KRenderedImage
-
- readStream - Variable in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
An
ImageInputStream used for reading.
- readString() - Method in class loci.formats.in.OBFReader
-
- readStringArray(String) - Method in interface loci.formats.services.JHDFService
-
Reads String array array from path.
- readStringArray(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- readSubsampledRaster(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- readSubsampledRaster(WritableRaster) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- readSupportsThumbnails() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- readTagHeader() - Method in class loci.formats.in.OpenlabReader
-
Read the next tag.
- readTags(RandomAccessInputStream, boolean, String) - Method in class loci.formats.in.CellSensReader
-
- readThumbImages() - Method in class loci.plugins.in.ImagePlusReader
-
- readTiffIFDEntry() - Method in class loci.formats.tiff.TiffParser
-
- readTile(int, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- readTilePartHeader() - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Reads SOT marker segment of the tile-part header and calls related
methods of the HeaderDecoder to read other markers segments.
- readTilePkts(int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Finish initialization of members for specified tile, reads packets head
of each tile and keeps location of each code-block's codewords.
- readTimePoints(Document) - Method in class loci.formats.in.CellVoyagerReader
-
- readTLM(DataInputStream) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Reads TLM marker segment and realigns the codestream where the next
marker should be found.
- readTopLevel() - Method in class loci.formats.tools.AmiraParameters
-
- readTypeAndSize() - Method in class loci.formats.in.AVIReader
-
- readUnsignedByte() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readUnsignedByte() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readUnsignedByte() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read an unsigned byte (i.e., 8 bit) from the input.
- readUnsignedByte() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Reads an unsigned byte (i.e., 8 bit) from the input.
- readUnsignedByte() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads an unsigned byte (8 bit) from the input.
- readUnsignedInt() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readUnsignedInt() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readUnsignedInt() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Reads an unsigned int (i.e., 32 bit) from the input.
- readUnsignedInt() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read an unsigned int (i.e., 32 bit) from the input.
- readUnsignedInt() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads a unsigned int (32 bit) from the input.
- readUnsignedLong(RandomAccessInputStream) - Method in class loci.formats.in.SDTInfo
-
- readUnsignedShort() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readUnsignedShort() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- readUnsignedShort() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Reads an unsigned short (i.e., 16 bit) from the input.
- readUnsignedShort() - Method in interface jj2000.j2k.io.BinaryDataInput
-
Should read an unsigned short (i.e., 16 bit) from the input.
- readUnsignedShort() - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Reads an unsigned short (16 bit) from the input.
- readURLBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the contents of the XML box
- readUTF() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- readUUIDBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the contents of the Intellectual property box
- readUUIDListBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the contents of the UUID List box
- readValue(int) - Method in class loci.formats.in.GatanReader
-
- readValue() - Method in class loci.formats.in.ZeissLSMReader
-
- readVariable() - Method in class loci.formats.in.OpenlabReader
-
- readVariable() - Method in class loci.formats.in.QuesantReader
-
- readWavelength(int, MetadataStore) - Method in class loci.formats.in.DeltavisionReader
-
- readWellInfo(Element, double, double, int, int) - Method in class loci.formats.in.CellVoyagerReader
-
- readXMLBlock() - Method in class loci.formats.in.OIRReader
-
- readXMLBox(int) - Method in class jj2000.j2k.fileformat.reader.FileFormatReader
-
This method reads the contents of the XML box
- realChannel - Variable in class loci.formats.in.LIFReader
-
- realColors - Variable in class loci.formats.in.ND2Handler
-
- realFile - Variable in class loci.formats.Memoizer
-
- realHeight - Variable in class loci.formats.in.BaseZeissReader
-
- realWidth - Variable in class loci.formats.in.BaseZeissReader
-
- rebuild(GenericDialog) - Method in class loci.plugins.in.FilePatternDialog
-
- rebuildDialog(GenericDialog) - Method in class loci.plugins.in.MainDialog
-
Fancies up the importer dialog to look much nicer.
- rebuildDialog(GenericDialog, int) - Method in class loci.plugins.in.SeriesDialog
-
- REC_BOOLEAN - Static variable in class loci.formats.in.IM3Reader
-
- REC_CONTAINER - Static variable in class loci.formats.in.IM3Reader
-
A record that is a container of
other records.
- REC_FLOAT - Static variable in class loci.formats.in.IM3Reader
-
- REC_IMAGE - Static variable in class loci.formats.in.IM3Reader
-
Image format
int: pixel type? 3 = RGBA
int: width
int: height
int: depth
data bytes follow
- REC_INT - Static variable in class loci.formats.in.IM3Reader
-
32-bit integer values
- REC_NESTED - Static variable in class loci.formats.in.IM3Reader
-
A nested record of records
- REC_STRING - Static variable in class loci.formats.in.IM3Reader
-
A string
int: ?
int: length
8-byte characters follow
- REC_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- recache(int) - Method in class loci.formats.cache.Cache
-
Updates the given plane.
- recache() - Method in class loci.formats.cache.Cache
-
Updates all planes on the load list.
- recalcTreeV() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Recalculates the values of the elements in the tag tree, in
levels 1 and up, based on the values of the leafs (level 0).
- reconstructedComps - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
block storing the reconstructed image for each component
- record - Variable in class loci.plugins.util.BFVirtualStack
-
- record(String) - Method in class loci.plugins.util.RecordedImageProcessor
-
- record(String, Object, Class<?>) - Method in class loci.plugins.util.RecordedImageProcessor
-
- record(String, Object[], Class<?>[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- RecordedImageProcessor - Class in loci.plugins.util
-
Image processor extension that records commands executed upon it.
- RecordedImageProcessor(ImageProcessor) - Constructor for class loci.plugins.util.RecordedImageProcessor
-
- RecordedImageProcessor(ImageProcessor, int, ImageProcessor[]) - Constructor for class loci.plugins.util.RecordedImageProcessor
-
- RecordedImageProcessor.MethodEntry - Class in loci.plugins.util
-
- Recording() - Constructor for class loci.formats.in.ZeissLSMReader.Recording
-
- RECORDING_CAMERA_BINNING - Static variable in class loci.formats.in.ZeissLSMReader
-
- RECORDING_DESCRIPTION - Static variable in class loci.formats.in.ZeissLSMReader
-
- RECORDING_NAME - Static variable in class loci.formats.in.ZeissLSMReader
-
Data types.
- RECORDING_OBJECTIVE - Static variable in class loci.formats.in.ZeissLSMReader
-
- RECORDING_SAMPLE_0TIME - Static variable in class loci.formats.in.ZeissLSMReader
-
- RECORDING_ZOOM - Static variable in class loci.formats.in.ZeissLSMReader
-
- records - Variable in class loci.formats.in.IM3Reader
-
- recordWidth - Variable in class loci.formats.in.PDSReader
-
- rect - Variable in class jj2000.j2k.roi.encoder.ROI
-
Flag indicating whether the ROI is rectangular or not
- RECTANGLE - Static variable in class loci.formats.in.FV1000Reader
-
- RECTANGLE - Static variable in class loci.formats.in.LeicaHandler.ROI
-
- RECTANGLE - Static variable in class loci.formats.in.LIFReader.ROI
-
- RECTANGLE - Static variable in class loci.formats.in.ZeissLSMReader
-
- rectangles - Variable in class loci.formats.in.FakeReader
-
- RectangleStrategy - Class in loci.formats.cache
-
A rectangle strategy caches planes extending from the the current
dimensional position along each axis and combination of axes.
- RectangleStrategy(int[]) - Constructor for class loci.formats.cache.RectangleStrategy
-
Constructs a rectangle strategy.
- RectROIMaskGenerator - Class in jj2000.j2k.roi.encoder
-
This class generates the ROI masks when there are only rectangular ROIs in
the image.
- RectROIMaskGenerator(ROI[], int) - Constructor for class jj2000.j2k.roi.encoder.RectROIMaskGenerator
-
The constructor of the mask generator.
- red - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder.ColorNode
-
- red - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- RED_GAIN - Static variable in class loci.formats.in.CellSensReader
-
- RED_MAX - Static variable in class loci.plugins.in.Colorizer
-
- RED_OFFSET - Static variable in class loci.formats.in.CellSensReader
-
- redGain - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- redMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- redMask - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- redOffset - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- redOffset - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
- redShort - Variable in class loci.formats.gui.Index16ColorModel
-
Lookup tables.
- reduce() - Method in class loci.formats.tiff.TiffRational
-
Reduces this rational's fraction to lowest terms.
- reduceList - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- reduceTree() - Method in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- redX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- redY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- redZ - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- refCount - Variable in class loci.plugins.util.VirtualReader
-
- REFERENCE_BLACK_WHITE - Static variable in class loci.formats.tiff.IFD
-
- referenceBlackCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- referenceBlackCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- referenceBlackCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- referenceBlackCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- ReferenceBlackWhite() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ReferenceBlackWhite
-
- referenceBlackY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- referenceBlackY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- referenceWhiteCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- referenceWhiteCb - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- referenceWhiteCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- referenceWhiteCr - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- referenceWhiteY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- referenceWhiteY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- reformatData(byte[], int, int, short[], int[], int, int) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Reformats data read as bytes into a short or int buffer.
- reformatDiscontiguousData(byte[], int, int, int, WritableRaster) - Static method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Reformats bit-discontiguous data into the
DataBuffer
of the supplied WritableRaster.
- refractive - Variable in class loci.formats.in.InCellReader
-
- REFRACTIVE_INDEX - Static variable in class loci.formats.in.CellSensReader
-
- refractiveIndex - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- refractiveIndex - Variable in class loci.formats.in.IvisionReader
-
- refractiveIndex - Variable in class loci.formats.in.LIFReader
-
- refractiveIndex - Variable in class loci.formats.in.NativeND2Reader
-
- refractiveIndex - Variable in class loci.formats.in.ND2Handler
-
- refractiveIndex - Variable in class loci.formats.in.ZeissCZIReader
-
- refresher - Variable in class loci.formats.gui.PreviewPane
-
Method for syncing the view to the model.
- registered - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriterSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriterSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriterSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriterSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriterSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- registered - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- registerMsgLogger(Thread, MsgLogger) - Static method in class jj2000.j2k.util.FacilityManager
-
Registers the MsgLogger 'ml' as the logging facility of the
thread 't'.
- registerProgressWatch(Thread, ProgressWatch) - Static method in class jj2000.j2k.util.FacilityManager
-
- registerServiceProviders() - Static method in class loci.formats.services.JAIIIOServiceImpl
-
Register the JPEG-2000 readers with the reader service.
- REGISTRY - Static variable in class loci.formats.UpgradeChecker
-
Location of the OME registry.
- REGISTRY_IMAGEJ - Static variable in class loci.formats.UpgradeChecker
-
Registry ID identifying usage of Bio-Formats in ImageJ.
- REGISTRY_LIBRARY - Static variable in class loci.formats.UpgradeChecker
-
Registry ID identifying usage of Bio-Formats as a library in general.
- REGISTRY_PROPERTIES - Static variable in class loci.formats.UpgradeChecker
-
Properties that are sent to the OME registry.
- RELATED_SOUND_FILE - Static variable in class loci.formats.tiff.IFD
-
- RelatedSoundFile() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.RelatedSoundFile
-
- relativeTime - Variable in class loci.formats.in.PrairieMetadata.Frame
-
relativeTime attribute of this <Frame>.
- remainingTileParts - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
The number of tile-parts that remain to read
- removeAllowedTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Removes a
TIFFTagSet object from the list of
allowed tag sets.
- removeBinData(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService
-
Remove all of the BinData elements from the given OME-XML metadata object.
- removeBinData(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- removeCacheListener(CacheListener) - Method in class loci.formats.cache.Cache
-
- removeCacheListener(CacheListener) - Method in interface loci.formats.cache.CacheReporter
-
Removes a listener for status update events.
- removeCacheListener(CacheListener) - Method in class loci.formats.cache.CacheStrategy
-
- removeChannels(OMEXMLMetadata, int, int) - Method in interface loci.formats.services.OMEXMLService
-
Remove all but the first sizeC valid Channel elements from the given
OME-XML metadata object.
- removeChannels(OMEXMLMetadata, int, int) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- removeChild(Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- removeClass(Class<? extends T>) - Method in class loci.formats.ClassList
-
Removes the given class from the list.
- removeExtension(String) - Method in class loci.plugins.out.Exporter
-
Removes the extension of the specified name.
- removeGST(String) - Method in class loci.formats.in.FV1000Reader
-
- removePossible(String) - Method in class loci.plugins.prefs.StringOption
-
Removes a possible value from the list.
- removeStatusListener(StatusListener) - Method in class loci.plugins.in.ImagePlusReader
-
- removeStatusListener(StatusListener) - Method in class loci.plugins.in.ImportProcess
-
- removeTagSet(TIFFTagSet) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Removes an element from the group of
TIFFTagSets of which this
directory is aware.
- removeTiffData(OMEXMLMetadata) - Method in interface loci.formats.services.OMEXMLService
-
Remove all of the TiffData elements from the given OME-XML metadata object.
- removeTiffData(OMEXMLMetadata) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- removeTIFFField(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Removes a TIFF field from the directory.
- removeTIFFField(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- removeTIFFFields() - Method in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Removes all TIFF fields from the directory.
- removeUpdate(DocumentEvent) - Method in class loci.plugins.config.FlexWidgets
-
- RENDER_OPERATION_ID - Static variable in class loci.formats.in.CellSensReader
-
- RenderedImageSrc - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
- RenderedImageSrc(Raster, J2KImageWriteParamJava, J2KImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Creates
RenderedImageSrc for encoding a Raster.
- RenderedImageSrc(RenderedImage, J2KImageWriteParamJava, J2KImageWriter) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Creates
RenderedImageSrc for encoding a
RenderedImage.
- reopenFile() - Method in class loci.formats.DelegateReader
-
- reopenFile() - Method in class loci.formats.FileStitcher
-
- reopenFile() - Method in class loci.formats.FormatReader
-
- reopenFile() - Method in interface loci.formats.IFormatReader
-
Reopen any files that were closed, and which are expected to be open
while the reader is open.
- reopenFile() - Method in class loci.formats.ImageReader
-
- reopenFile() - Method in class loci.formats.in.AnalyzeReader
-
- reopenFile() - Method in class loci.formats.in.CellH5Reader
-
- reopenFile() - Method in class loci.formats.in.CellSensReader
-
- reopenFile() - Method in class loci.formats.in.FakeReader
-
- reopenFile() - Method in class loci.formats.in.FlowSightReader
-
- reopenFile() - Method in class loci.formats.in.HitachiReader
-
- reopenFile() - Method in class loci.formats.in.ICSReader
-
- reopenFile() - Method in class loci.formats.in.ImagicReader
-
- reopenFile() - Method in class loci.formats.in.MinimalTiffReader
-
- reopenFile() - Method in class loci.formats.in.NiftiReader
-
- reopenFile() - Method in class loci.formats.in.OMETiffReader
-
- reopenFile() - Method in class loci.formats.in.ScreenReader
-
- reopenFile() - Method in class loci.formats.in.SPCReader
-
- reopenFile() - Method in class loci.formats.ReaderWrapper
-
- reorder(int) - Method in class loci.formats.DimensionSwapper
-
- reorder(ImagePlus, String, String) - Static method in class loci.plugins.Slicer
-
Reorder the given ImagePlus's stack.
- reorderResolutions() - Method in class loci.formats.in.SVSReader
-
Validate the order of resolutions for the current series, in
decending order of size.
- reorderXSLT - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
Reordering stylesheet.
- repeat(String, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- replace(String, Box) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- replaceChild(Node, Node) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- replaceExtension(String, String, String) - Method in class loci.formats.in.FV1000Reader
-
- replacementMetadataStore - Variable in class loci.formats.Memoizer
-
MetadataStore created internally.
- replacePixels(RenderedImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixels(Raster, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsByteCounts - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsByteCountsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsLock - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsOffsetsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsRegion - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- replacePixelsTileOffsets - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- repoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- reportException(Throwable) - Static method in class loci.plugins.util.WindowTools
-
Reports the given exception with stack trace in an ImageJ error dialog.
- reportException(Throwable, boolean) - Static method in class loci.plugins.util.WindowTools
-
Reports the given exception with stack trace in an ImageJ error dialog.
- reportException(Throwable, boolean, String) - Static method in class loci.plugins.util.WindowTools
-
Reports the given exception with stack trace in an ImageJ error dialog.
- reportProgress() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- REPRESENTATION_KEYS - Static variable in class loci.formats.in.ICSReader
-
- repT - Variable in class loci.formats.in.SDTInfo
-
- requiredSize - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- RES_CODES - Static variable in class com.sun.media.imageioimpl.common.LZWStringTable
-
codesize + Reserved Codes
- RES_LY_COMP_POS_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType
-
The bit stream is Resolution/Layer/Component/Position progressive : 1
- RES_POS_COMP_LY_PROG - Static variable in interface jj2000.j2k.codestream.ProgressionType
-
The bit stream is Resolution/Position/Component/Layer progressive : 2
- RES_SUFFIX - Static variable in class loci.formats.in.FlexReader
-
- rescale(int, int) - Method in class loci.formats.gui.SignedColorModel
-
- rescale(int) - Method in class loci.formats.gui.SignedColorModel
-
- RESCALE_INTERCEPT - Static variable in class loci.formats.in.DicomReader
-
- RESCALE_SLOPE - Static variable in class loci.formats.in.DicomReader
-
- rescaleIntercept - Variable in class loci.formats.in.DicomReader
-
- rescaleSlope - Variable in class loci.formats.in.DicomReader
-
- reserved1 - Variable in class loci.formats.in.SDTInfo
-
- reserved2 - Variable in class loci.formats.in.SDTInfo
-
- reset() - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- reset() - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- reset() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Resets the buffer.
- reset() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Resets the contents of this HeaderEncoder to its initial state.
- reset() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Resets the state of the object to the initial state, as if the object
was just created.
- reset() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Resets the tree values and state.
- reset(int[]) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Resets the tree values and state.
- reset() - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
Resets the bit buffer to empty, without writing anything to the
underlying byte output, and resets the byte count.
- reset() - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Discards all the buffered data, by resetting the counter of written
bytes to 0.
- reset() - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Reinitializes the MQ coder and the underlying 'ByteOutputBuffer' buffer
as if a new object was instantaited.
- reset() - Method in class loci.formats.cache.Cache
-
Reallocates the cache.
- reset() - Method in class loci.plugins.util.RecordedImageProcessor
-
- reset(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor
-
- resetBinaryThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
-
- resetCtxt(int) - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Resets a context to the original probability distribution.
- resetCtxt(int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Resets a context to the original probability distribution, and sets its
more probable symbol to 0.
- resetCtxts() - Method in class jj2000.j2k.entropy.decoder.MQDecoder
-
Resets a context to the original probability distribution.
- resetCtxts() - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Resets all contexts to their original probability distribution and sets
all more probable symbols to 0.
- resetHeaderInfo() - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- resetHeaderMarkers() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Method that resets members indicating which markers have already been
found
- resetLocal() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Resets locally defined instance variables.
- resetLocal() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- resetMinAndMax() - Method in class loci.plugins.util.RecordedImageProcessor
-
- resetMQ - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
If this is enabled the probability estimates of the MQ coder are
reset after each arithmetically coded (i.e.
- resetRoi() - Method in class loci.plugins.util.RecordedImageProcessor
-
- resetThreshold() - Method in class loci.plugins.util.RecordedImageProcessor
-
- ResHandler() - Constructor for class loci.formats.in.FlexReader.ResHandler
-
- resize(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- resize(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- resLabel - Variable in class loci.formats.gui.PreviewPane
-
Labels containing thumbnail and dimensional information.
- reslice(ImagePlus, boolean, boolean, boolean, String) - Method in class loci.plugins.Slicer
-
- resLvl - Variable in class jj2000.j2k.wavelet.Subband
-
The resolution level to which this subband contributes.
- reslvl - Variable in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
The resquested image resolution level for reconstruction.
- resolution - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
-
Specifies the resolution level wanted for the decoded image
(0 means the lowest available resolution, the resolution
level gives an image with the original dimension).
- resolution - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
The resolution level requested.
- resolution - Variable in class loci.formats.codec.JPEG2000CodecOptions
-
The resolution level as would be provided to:
J2KImageReadParam.setResolution(int)
(READ).
- resolution - Variable in class loci.formats.FormatReader
-
The number of the current resolution.
- RESOLUTION_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- RESOLUTION_UNIT - Static variable in class loci.formats.tiff.IFD
-
- RESOLUTION_UNIT_CENTIMETER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "ResolutionUnit" tag.
- RESOLUTION_UNIT_INCH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "ResolutionUnit" tag.
- RESOLUTION_UNIT_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "ResolutionUnit" tag.
- ResolutionBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Resolution Box of JPEG JP2
file format.
- ResolutionBox(int, byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
Constructs a
ResolutionBox from the provided type and
content data array.
- ResolutionBox(int, float, float) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
Constructs a
ResolutionBox from the provided type and
horizontal/vertical resolutions.
- ResolutionBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
Constructs a
ResolutionBox based on the provided
org.w3c.dom.Node.
- resolutionCount - Variable in class loci.formats.CoreMetadata
-
- resolutionCount - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- resolutionIndex - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- resolutionLevels - Variable in class loci.formats.in.JPEG2000MetadataParser
-
Number of JPEG 2000 resolution levels the file has.
- resolutionLevels - Variable in class loci.formats.in.JPEG2000Reader
-
The number of JPEG 2000 resolution levels the file has.
- resolutionLevels - Variable in class loci.formats.in.JPXReader
-
The number of JPEG 2000 resolution levels the file has.
- resolutionLevels - Variable in class loci.formats.in.MinimalTiffReader
-
Number of JPEG 2000 resolution levels.
- ResolutionUnit() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.ResolutionUnit
-
- resolutionX - Variable in class loci.formats.in.OperettaReader.Plane
-
- resolutionY - Variable in class loci.formats.in.OperettaReader.Plane
-
- resourceBaseName - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- resourceBaseName - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadataFormat
-
- resourceBaseName - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- resourceCount - Variable in class loci.formats.ResourceNamer
-
- ResourceNamer - Class in loci.formats
-
Utility class helping with generating human-readable resource names
based on alphanumeric indexing.
- ResourceNamer(int) - Constructor for class loci.formats.ResourceNamer
-
- resourceNamer - Variable in class loci.formats.tools.FakeImage
-
- restart(int, int[], int, CBlkInfo[][][][][], boolean, ByteArrayInputStream) - Method in class jj2000.j2k.codestream.reader.PktDecoder
-
Re-initialize the PktDecoder instance at the beginning of a new tile.
- restartAlphabet() - Method in class loci.formats.ResourceNamer
-
Resets the internal state of the class so that it starts alphabet
generation from the first letter (ASCII A).
- restartInterval - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- restartMarkers - Variable in class loci.formats.in.HamamatsuVMSReader
-
- restartMarkers - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- resText - Variable in class loci.formats.gui.PreviewPane
-
- resTip - Variable in class loci.formats.gui.PreviewPane
-
- restore() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Restores the last saved state of this object.
- restore() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Restores the saved values and state of the tree.
- resultFile - Variable in class loci.formats.in.MIASReader
-
Path to file containing analysis results for all plates.
- REUSE - Static variable in class loci.formats.tiff.IFD
-
- rev - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The reversible flag to use in compression
- REV_FILTER_STR - Static variable in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
The reversible default filter
- reverseFileMapping - Variable in class loci.formats.in.FlexReader
-
- reverseX - Variable in class loci.formats.in.PDSReader
-
- reverseY - Variable in class loci.formats.in.PDSReader
-
- reversible - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
The reversible flag for each component in each tile.
- revision - Variable in class loci.formats.in.SDTInfo
-
Software revision number (lower 4 bits >= 10(decimal)).
- rgb - Variable in class loci.formats.CoreMetadata
-
Indicates whether or not the images are stored as RGB
(multiple channels per plane).
- RGB - Static variable in class loci.formats.in.CellSensReader
-
- RGB_MASK - Static variable in class loci.formats.in.BMPReader
-
- rgh - Variable in class jj2000.j2k.codestream.PrecInfo
-
Precinct height reported in the reference grid
- rgn - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the RGN marker segments found in main and first tile-part
header.
- RGN() - Constructor for class jj2000.j2k.codestream.HeaderInfo.RGN
-
- RGN - Static variable in interface jj2000.j2k.codestream.Markers
-
Region-of-interest (RGN): 0xFF5E
- RGN_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for RGN marker segment found
- rgulx - Variable in class jj2000.j2k.codestream.PrecInfo
-
Precinct horizontal upper-left coordinate in the reference grid
- rguly - Variable in class jj2000.j2k.codestream.PrecInfo
-
Precinct vertical upper-left coordinate in the reference grid
- rgw - Variable in class jj2000.j2k.codestream.PrecInfo
-
Precinct width reported in the reference grid
- RHKReader - Class in loci.formats.in
-
RHKReader is the file format reader for RHK Technologies files.
- RHKReader() - Constructor for class loci.formats.in.RHKReader
-
Constructs a new RHK reader.
- ri - Variable in class loci.formats.in.OIRReader.Objective
-
- RLC_CTXT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The RLC context
- RLC_CTXT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The RLC context
- RLC_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The mask to isolate the bits necessary to identify RLC coding state
(significant, visited and non-zero context, for row 1 and 2).
- RLC_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The mask to isolate the bits necessary to identify RLC coding state
(significant, visited and non-zero context, for row 1 and 2).
- RLE_4 - Static variable in class loci.formats.in.BMPReader
-
- RLE_8 - Static variable in class loci.formats.in.BMPReader
-
- ROI - Class in jj2000.j2k.roi.encoder
-
This class contains the shape of a single ROI.
- ROI(int, ImgReaderPGM) - Constructor for class jj2000.j2k.roi.encoder.ROI
-
Constructor for ROI with arbitrary shape
- ROI(int, int, int, int, int) - Constructor for class jj2000.j2k.roi.encoder.ROI
-
Constructor for rectangular ROIs
- ROI(int, int, int, int) - Constructor for class jj2000.j2k.roi.encoder.ROI
-
Constructor for circular ROIs
- roi - Variable in class jj2000.j2k.roi.encoder.ROIScaler
-
Flag indicating the presence of ROIs
- roi - Variable in class loci.formats.in.LeicaHandler
-
- ROI() - Constructor for class loci.formats.in.LeicaHandler.ROI
-
- ROI() - Constructor for class loci.formats.in.LiFlimReader.ROI
-
- ROI() - Constructor for class loci.formats.in.LIFReader.ROI
-
- ROI_PREFIX - Static variable in class loci.formats.in.FakeReader
-
- ROI_SIGNATURE - Static variable in class loci.formats.in.ZeissZVIReader
-
- ROI_SPACING - Static variable in class loci.formats.in.FakeReader
-
- roiCount - Variable in class loci.formats.in.FakeReader
-
- ROIDeScaler - Class in jj2000.j2k.roi
-
This class takes care of the de-scaling of ROI coefficients.
- ROIDeScaler(CBlkQuantDataSrcDec, MaxShiftSpec) - Constructor for class jj2000.j2k.roi.ROIDeScaler
-
Constructor of the ROI descaler, takes EntropyDEcoder as source of data
to de-scale.
- roiDrawFile - Variable in class loci.formats.in.TrestleReader
-
- roids - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- roiFile - Variable in class loci.formats.in.BDReader
-
- roiFile - Variable in class loci.formats.in.TrestleReader
-
- roiFilenames - Variable in class loci.formats.in.FV1000Reader
-
- roiFiles - Variable in class loci.formats.in.MIASReader
-
- ROIHandler - Class in loci.plugins.util
-
Utility class for managing regions of interest within ImageJ.
- ROIHandler() - Constructor for class loci.plugins.util.ROIHandler
-
- roiIDs - Variable in class loci.formats.in.BaseZeissReader
-
- roiInPkt - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
Whether or not there is ROI information in the last encoded Packet
- roiInTile - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
Flag indicating if any ROI was found to be in this tile
- roiInTile - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator
-
- roiLen - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
Length to read in current packet body to get all the ROI information
- roiMask - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
The ROI mask for the current tile for all components
- roiMask - Variable in class jj2000.j2k.roi.encoder.ROIScaler
-
The ROI mask
- ROIMaskGenerator - Class in jj2000.j2k.roi.encoder
-
This class generates the ROI masks for the ROIScaler.It gives the scaler
the ROI mask for the current code-block.
- ROIMaskGenerator(ROI[], int) - Constructor for class jj2000.j2k.roi.encoder.ROIMaskGenerator
-
The constructor of the mask generator
- ROIs - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies ROIs shape and location.
- rois - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
ROI maxshift value specifications
- rois - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator
-
Array containing the ROIs
- rois - Variable in class loci.formats.in.LiFlimReader
-
- rois - Variable in class loci.formats.in.ND2Handler
-
- ROIS_MODE_MANAGER - Static variable in class loci.plugins.in.ImporterOptions
-
- ROIS_MODE_OVERLAY - Static variable in class loci.plugins.in.ImporterOptions
-
- roiSc - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Reference to the ROI module
- ROIScaler - Class in jj2000.j2k.roi.encoder
-
This class deals with the ROI functionality.
- ROIScaler(Quantizer, ROIMaskGenerator, boolean, int, boolean, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.roi.encoder.ROIScaler
-
Constructor of the ROI scaler, takes a Quantizer as source of data to
scale.
- roisModeChoice - Variable in class loci.plugins.in.MainDialog
-
- root - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- root - Variable in class loci.formats.services.NetCDFServiceImpl
-
Root of the NetCDF file.
- root - Variable in class loci.formats.services.POIServiceImpl
-
- rootIFD - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- rootList - Variable in class loci.formats.in.BDReader
-
- rootName - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- rotate(double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- rotate90(Point) - Method in class jj2000.j2k.ModuleSpec
-
Rotate the ModuleSpec instance by 90 degrees (this modifies only tile
and tile-component specifications).
- rotateLeft() - Method in class loci.plugins.util.RecordedImageProcessor
-
- rotateRight() - Method in class loci.plugins.util.RecordedImageProcessor
-
- ROTATION - Static variable in class loci.formats.FormatTools
-
Identifies the Rotation dimensional type,
representing a dimension consisting of rotations.
- ROTATION - Static variable in class loci.formats.in.FV1000Reader
-
- rotation - Variable in class loci.formats.in.LeicaHandler.ROI
-
- rotation - Variable in class loci.formats.in.LIFReader.ROI
-
- rotationLabels - Variable in class loci.formats.in.ZeissCZIReader
-
- rotations - Variable in class loci.formats.in.ZeissCZIReader
-
- rotations - Variable in class loci.formats.in.ZeissLSMReader
-
- roundBpp(int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- row - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- row - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- row - Variable in class loci.formats.in.ColumbusReader.Plane
-
- row - Variable in class loci.formats.in.FlexReader.FlexFile
-
- row - Variable in class loci.formats.in.OMEXMLReader.BinData
-
- row - Variable in class loci.formats.in.OperettaReader.Plane
-
- row - Variable in class loci.formats.in.TextReader
-
Current row number.
- row - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- row - Variable in class loci.formats.tools.AmiraParameters
-
- ROW_COUNT - Static variable in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- rowBytes - Variable in class loci.formats.in.PictReader
-
Number of bytes in a row of pixel data (variable).
- rowCount - Variable in class loci.formats.in.BaseZeissReader
-
- rowLength - Variable in class loci.formats.in.TextReader
-
Number of tokens per row.
- rowName - Variable in class loci.formats.in.InCellReader
-
- RowPanel() - Constructor for class loci.formats.gui.DataConverter.RowPanel
-
- rowPtr - Variable in class loci.formats.codec.RPZACodec
-
- rows - Variable in class loci.formats.in.CellSensReader
-
- ROWS - Static variable in class loci.formats.in.DicomReader
-
- ROWS_PER_STRIP - Static variable in class loci.formats.tiff.IFD
-
- rowsDone - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- RowsPerStrip() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.RowsPerStrip
-
- rPad - Variable in class loci.formats.gui.CacheIndicator
-
- RPZACodec - Class in loci.formats.codec
-
Implements encoding and decoding methods for Apple RPZA.
- RPZACodec() - Constructor for class loci.formats.codec.RPZACodec
-
- rQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The resolution in which the ncb quit condition was reached
- rs - Variable in class jj2000.j2k.entropy.Progression
-
Resolution index for the start of a progression
- rsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- RSIZ_BASELINE - Static variable in interface jj2000.j2k.codestream.Markers
-
No special capabilities (baseline) in codestream, in Rsiz field of SIZ
marker: 0x00.
- RSIZ_ER_FLAG - Static variable in interface jj2000.j2k.codestream.Markers
-
Error resilience marker flag bit in Rsiz field in SIZ marker: 0x01
- RSIZ_ROI - Static variable in interface jj2000.j2k.codestream.Markers
-
ROI present marker flag bit in Rsiz field in SIZ marker: 0x02
- rspoc - Variable in class jj2000.j2k.codestream.HeaderInfo.POC
-
- RST0 - Static variable in class loci.formats.services.JPEGTurboServiceImpl
-
- RST7 - Static variable in class loci.formats.services.JPEGTurboServiceImpl
-
- RST_0 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- RST_1 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- RST_2 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- RST_3 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- RST_4 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- RST_5 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- RST_6 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- RST_7 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- rts - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Regular termination specifications
- run() - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
Calls the 'compressCodeBlock()' method with thread local
arguments.
- run() - Method in class jj2000.j2k.util.ThreadPool.ThreadPoolThread
-
The method that is run by the thread.
- run() - Method in class loci.formats.cache.CacheUpdater
-
- run() - Method in class loci.formats.gui.DataConverter
-
- run() - Method in class loci.formats.gui.ImageViewer
-
Handles animation.
- run() - Method in class loci.formats.gui.PreviewPane
-
Thumbnail loading routine.
- RUN - Static variable in class loci.formats.ResourceNamer
-
- run(String) - Method in class loci.plugins.About
-
- run() - Method in class loci.plugins.config.ConfigWindow
-
Populate configuration information in a separate thread.
- run(String) - Method in class loci.plugins.config.LociConfig
-
Executes the plugin.
- run(String) - Method in class loci.plugins.config.LociInstaller
-
Executes the plugin.
- run(String) - Method in class loci.plugins.in.Importer
-
Executes the plugin.
- run() - Method in class loci.plugins.in.ThumbLoader
-
Does the work of loading the thumbnails.
- run(ImageProcessor) - Method in class loci.plugins.LociExporter
-
Executes the plugin.
- run(String) - Method in class loci.plugins.LociImporter
-
Executes the plugin.
- run(String) - Method in class loci.plugins.macro.LociFunctions
-
- run(String) - Method in class loci.plugins.macro.MacroFunctions
-
- run() - Method in class loci.plugins.out.Exporter
-
Executes the plugin.
- run(String) - Method in class loci.plugins.shortcut.ShortcutPanel
-
Executes the plugin.
- run(ImageProcessor) - Method in class loci.plugins.Slicer
-
- run(String) - Method in class loci.plugins.Updater
-
- runAndWrite() - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Runs the rate allocation algorithm and writes the data to the bit
stream writer object provided to the constructor.
- runAndWrite() - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Runs the rate allocation algorithm and writes the data to the
bit stream.
- runPlugIn(String, String) - Static method in class loci.plugins.shortcut.ShortcutPanel
-
Executes the given plugin, in a separate thread.
- runTarget(Runnable, Object) - Method in class jj2000.j2k.util.ThreadPool
-
Runs the run method of the specified target in an idle thread of this
pool.
- runTarget(Runnable, Object, boolean) - Method in class jj2000.j2k.util.ThreadPool
-
Runs the run method of the specified target in an idle thread of this
pool.
- runTarget(Runnable, Object, boolean, boolean) - Method in class jj2000.j2k.util.ThreadPool
-
Runs the run method of the specified target in an idle thread of this
pool.
- RWC_FRAME_ORIGIN - Static variable in class loci.formats.in.CellSensReader
-
- RWC_FRAME_SCALE - Static variable in class loci.formats.in.CellSensReader
-
- RWC_FRAME_UNIT - Static variable in class loci.formats.in.CellSensReader
-
S
- S_AXIS - Static variable in class loci.formats.AxisGuesser
-
Axis type for series.
- S_MAX_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD
-
- S_MIN_SAMPLE_VALUE - Static variable in class loci.formats.tiff.IFD
-
- S_PREFIXES - Static variable in class loci.formats.AxisGuesser
-
Prefixes indicating series dimension.
- SAMP_420 - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
4:2:0 chrominance subsampling.
- SAMP_422 - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
4:2:2 chrominance subsampling.
- SAMP_440 - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
4:4:0 chrominance subsampling.
- SAMP_444 - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
4:4:4 chrominance subsampling (no chrominance subsampling).
- SAMP_GRAY - Static variable in class org.libjpegturbo.turbojpeg.TJ
-
Grayscale.
- SAMPLE_FLAGS_LIST - Static variable in class loci.formats.in.CellSensReader
-
- SAMPLE_FORMAT - Static variable in class loci.formats.tiff.IFD
-
- SAMPLE_FORMAT_FLOATING_POINT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "SampleFormat" tag.
- SAMPLE_FORMAT_SIGNED_INTEGER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "SampleFormat" tag.
- SAMPLE_FORMAT_UNDEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "SampleFormat" tag.
- SAMPLE_FORMAT_UNSIGNED_INTEGER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "SampleFormat" tag.
- SAMPLE_ID_LIST - Static variable in class loci.formats.in.CellSensReader
-
- SAMPLE_MASK - Static variable in class loci.formats.in.CellSensReader
-
- SampleFormat() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SampleFormat
-
- sampleFormat - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the
SampleFormat tag.
- sampleFormat - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- sampleFormat - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- sampleModel - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The image's SampleModel.
- sampleModel - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- sampleModel - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- sampleModel - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- sampleModel - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- sampleModel - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
The sample model of the image to be compressed.
- SAMPLES_PER_PIXEL - Static variable in class loci.formats.in.DicomReader
-
- SAMPLES_PER_PIXEL - Static variable in class loci.formats.tiff.IFD
-
- sampleSize - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- SamplesPerPixel() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SamplesPerPixel
-
- samplesPerPixel - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The value of the
SamplesPerPixel tag.
- samplesPerPixel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- samplesPerPixel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- sampleTable - Variable in class loci.formats.in.VolocityReader
-
- sampleTime - Variable in class loci.formats.in.GatanReader
-
- sanitize(String, boolean) - Method in class loci.formats.gui.XMLCellRenderer.XMLItem
-
Sanitizes strings to appear correctly in HTML.
- sanitizeControl(String) - Static method in class loci.formats.in.NativeND2Reader
-
Remove control and invalid characters from the given string.
- sanitizeFile(String, String) - Method in class loci.formats.in.FV1000Reader
-
- sanitizeValue(String) - Method in class loci.formats.in.FV1000Reader
-
- Saturation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Saturation
-
- SATURATION - Static variable in class loci.formats.in.CellSensReader
-
- SATURATION - Static variable in class loci.formats.tiff.IFD
-
- SATURATION_HIGH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Saturation" tag.
- SATURATION_LOW - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Saturation" tag.
- SATURATION_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Saturation" tag.
- save() - Method in class jj2000.j2k.codestream.writer.PktEncoder
-
Saves the current state of this object.
- save() - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Saves the current values and state of the tree.
- save(String) - Method in class loci.formats.gui.ImageViewer
-
Saves the current images to the given destination
using the current format writer.
- save(String, IFormatWriter) - Method in class loci.formats.gui.ImageViewer
-
Saves to the given data destination using the specified writer
in a separate thread.
- save() - Method in class loci.formats.tools.EditTiffG
-
- save - Variable in class loci.plugins.prefs.Option
-
Whether option state should be saved to ImageJ preferences file.
- SAVE_FILE_SIZE - Static variable in class loci.formats.out.AVIWriter
-
- SAVE_JUNK_SIG - Static variable in class loci.formats.out.AVIWriter
-
- SAVE_LIST1_SIZE - Static variable in class loci.formats.out.AVIWriter
-
- SAVE_LIST1_SUBSIZE - Static variable in class loci.formats.out.AVIWriter
-
- SAVE_LIST2_SIZE - Static variable in class loci.formats.out.AVIWriter
-
- SAVE_MOVI - Static variable in class loci.formats.out.AVIWriter
-
- SAVE_STRF_SIZE - Static variable in class loci.formats.out.AVIWriter
-
- SAVE_STRN_POS - Static variable in class loci.formats.out.AVIWriter
-
- saveBytes(int, byte[]) - Method in class loci.formats.FormatWriter
-
- saveBytes(int, byte[], Region) - Method in class loci.formats.FormatWriter
-
- saveBytes(int, byte[]) - Method in interface loci.formats.IFormatWriter
-
Saves the given image to the current series in the current file.
- saveBytes(int, byte[], int, int, int, int) - Method in interface loci.formats.IFormatWriter
-
Saves the given image tile to the current series in the current file.
- saveBytes(int, byte[], Region) - Method in interface loci.formats.IFormatWriter
-
Saves the given image tile to the current series in the current file.
- saveBytes(int, byte[]) - Method in class loci.formats.ImageWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.ImageWriter
-
- saveBytes(int, byte[], Region) - Method in class loci.formats.ImageWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.APNGWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.AVIWriter
-
- saveBytes(int, byte[]) - Method in class loci.formats.out.CellH5Writer
-
Saves the given image to the specified (possibly already open) file.
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.CellH5Writer
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.EPSWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.ICSWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.ImageIOWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.JavaWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.JPEG2000Writer
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.LegacyQTWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.OMETiffWriter
-
- saveBytes(int, byte[], IFD, int, int, int, int) - Method in class loci.formats.out.OMETiffWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.OMEXMLWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.QTWriter
-
- saveBytes(int, byte[], IFD) - Method in class loci.formats.out.TiffWriter
-
Saves the given image to the specified (possibly already open) file.
- saveBytes(int, byte[], IFD, int, int, int, int) - Method in class loci.formats.out.TiffWriter
-
Saves the given image to the specified series in the current file.
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.TiffWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.V3DrawWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.out.WlzWriter
-
- saveBytes(int, byte[], int, int, int, int) - Method in interface loci.formats.services.WlzService
-
Adds a rectangle of bytes in an x-y plane to the opened Woolz object.
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.services.WlzServiceImpl
-
- saveBytes(int, byte[]) - Method in class loci.formats.WriterWrapper
-
- saveBytes(int, byte[], int, int, int, int) - Method in class loci.formats.WriterWrapper
-
- saveBytes(int, byte[], Region) - Method in class loci.formats.WriterWrapper
-
- saveComment(String, String) - Method in class loci.formats.out.OMETiffWriter
-
- saved - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The saved state
- saved - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
The saved state.
- SAVED_INC - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The increase in length for the arrays to save states
- SAVED_LEN - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The initial length of the arrays to save sates
- savedA - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
Saved values of the A register.
- savedB - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
Saved values of the B byte buffer.
- savedbLength - Variable in class loci.formats.out.AVIWriter
-
- savedC - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
Saved values of the C register.
- savedCT - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
Saved values of CT counter.
- savedDelFF - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
Saved values of the delFF (i.e.
- saveDefaults() - Method in class loci.plugins.in.ImportProcess
-
Performed following ImportStep.FILE notification.
- savedToMemo - Variable in class loci.formats.Memoizer
-
Whether the
ReaderWrapper.reader instance was saved to a memo file on
Memoizer.setId(String).
- saveFile(File) - Method in class loci.formats.tools.EditTiffG
-
- saveidx1Length - Variable in class loci.formats.out.AVIWriter
-
- saveImage(int, BufferedImage) - Method in class loci.formats.gui.BufferedImageWriter
-
Saves the given BufferedImage to the current file.
- saveImage(int, BufferedImage, int, int, int, int) - Method in class loci.formats.gui.BufferedImageWriter
-
Saves the given BufferedImage to the current file.
- saveLUTs(ImagePlus, List<LUT>) - Static method in class loci.plugins.in.ImagePlusReader
-
- saveMemo() - Method in class loci.formats.Memoizer
-
Save a reader including all reader wrappers inside a memo file.
- saveOption() - Method in class loci.plugins.prefs.BooleanOption
-
- saveOption() - Method in class loci.plugins.prefs.DoubleOption
-
- saveOption() - Method in class loci.plugins.prefs.Option
-
Saves the option's value to the ImageJ preferences file.
- saveOption() - Method in class loci.plugins.prefs.StringOption
-
- saveOptions() - Method in class loci.plugins.prefs.OptionsList
-
Saves option values to the ImageJ preferences file.
- saveOriginalMetadata - Variable in class loci.formats.FormatReader
-
Whether or not to save proprietary metadata in the MetadataStore.
- savePlane(int, Object) - Method in class loci.formats.FormatWriter
-
- savePlane(int, Object, int, int, int, int) - Method in class loci.formats.FormatWriter
-
- savePlane(int, Object, Region) - Method in class loci.formats.FormatWriter
-
- savePlane(int, Object) - Method in interface loci.formats.IFormatWriter
-
Saves the given image plane to the current series in the current file.
- savePlane(int, Object, int, int, int, int) - Method in interface loci.formats.IFormatWriter
-
Saves the given image plane to the current series in the current file.
- savePlane(int, Object, Region) - Method in interface loci.formats.IFormatWriter
-
Saves the given image plane to the current series in the current file.
- savePlane(int, Object) - Method in class loci.formats.ImageWriter
-
- savePlane(int, Object, int, int, int, int) - Method in class loci.formats.ImageWriter
-
- savePlane(int, Object, Region) - Method in class loci.formats.ImageWriter
-
- savePlane(int, Object, int, int, int, int) - Method in class loci.formats.out.ImageIOWriter
-
- savePlane(int, Object, int, int, int, int) - Method in class loci.formats.out.LegacyQTWriter
-
- savePlane(int, Object) - Method in class loci.formats.WriterWrapper
-
- savePlane(int, Object, int, int, int, int) - Method in class loci.formats.WriterWrapper
-
- savePlane(int, Object, Region) - Method in class loci.formats.WriterWrapper
-
- saveReader(IFormatReader) - Method in interface loci.formats.Memoizer.Deser
-
- saveReader(IFormatReader) - Method in class loci.formats.Memoizer.KryoDeser
-
- saveReader(IFormatReader) - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- saveReleaseVersion(String) - Method in interface loci.formats.Memoizer.Deser
-
- saveReleaseVersion(String) - Method in class loci.formats.Memoizer.KryoDeser
-
- saveReleaseVersion(String) - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- saveRevision(String) - Method in interface loci.formats.Memoizer.Deser
-
- saveRevision(String) - Method in class loci.formats.Memoizer.KryoDeser
-
- saveRevision(String) - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- saveROIs(MetadataStore) - Static method in class loci.plugins.util.ROIHandler
-
Save ROIs in the ROI manager to the given MetadataStore.
- saveStart(File) - Method in interface loci.formats.Memoizer.Deser
-
- saveStart(File) - Method in class loci.formats.Memoizer.KryoDeser
-
- saveStart(File) - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- saveState() - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Saves the current state of the MQ coder (just the registers, not the
contexts) so that a near optimal length calculation can be performed
later.
- saveStop() - Method in interface loci.formats.Memoizer.Deser
-
- saveStop() - Method in class loci.formats.Memoizer.KryoDeser
-
- saveStop() - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- saveStream - Variable in class loci.formats.Memoizer.RandomAccessDeser
-
- saveVersion(Integer) - Method in interface loci.formats.Memoizer.Deser
-
- saveVersion(Integer) - Method in class loci.formats.Memoizer.KryoDeser
-
- saveVersion(Integer) - Method in class loci.formats.Memoizer.RandomAccessDeser
-
- sb - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
The subband to which the code-block belongs
- sb - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The subband in which this code-block is found
- sb - Variable in class loci.formats.gui.ImageViewer
-
- sb - Variable in class loci.formats.in.FEITiffReader.FEIHandler
-
- sbandIdx - Variable in class jj2000.j2k.wavelet.Subband
-
The subband index within its resolution level.
- SBIGReader - Class in loci.formats.in
-
SBIGReader is the file format reader for SBIG files.
- SBIGReader() - Constructor for class loci.formats.in.SBIGReader
-
Constructs a new SBIG reader.
- SC_LUT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Sign Coding context lookup table.
- SC_LUT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Sign Coding context lookup table.
- SC_LUT_BITS - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Number of bits used for the Sign Coding lookup table
- SC_LUT_BITS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Number of bits used for the Sign Coding lookup table
- SC_LUT_MASK - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The mask to obtain the context index from the 'SC_LUT'
- SC_LUT_MASK - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The mask to obtain the context index from the 'SC_LUT'
- SC_MASK - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The bit mask to isolate the state bits relative to the sign coding
lookup table ('SC_LUT').
- SC_MASK - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The bit mask to isolate the state bits relative to the sign coding
lookup table ('SC_LUT').
- SC_SHIFT_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The shift to obtain the SC index to 'SC_LUT' from the 'state'
information, for row 1.
- SC_SHIFT_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The shift to obtain the SC index to 'SC_LUT' from the state
information, for row 1.
- SC_SHIFT_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The shift to obtain the SC index to 'SC_LUT' from the state
information, for row 2.
- SC_SHIFT_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The shift to obtain the SC index to 'SC_LUT' from the state
information, for row 2.
- SC_SPRED_SHIFT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The shift to obtain the sign predictor from the 'SC_LUT'.
- SC_SPRED_SHIFT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The shift to obtain the sign predictor from the 'SC_LUT'.
- scale - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- scale(BufferedImage, int, int, boolean) - Static method in class loci.formats.gui.AWTImageTools
-
Scales the image using the most appropriate API, with the resultant image
having the same color model as the original image.
- SCALE - Static variable in class loci.formats.in.FV1000Reader
-
- scale - Variable in class loci.formats.in.NativeQTReader
-
Amount to subtract from each offset.
- scale(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- scale0 - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- scale2D(BufferedImage, int, int, Object, GraphicsConfiguration) - Static method in class loci.formats.gui.AWTImageTools
-
Scales the image using the Java2D API, with the resultant
image optimized for the given graphics configuration.
- scale2D(BufferedImage, int, int, Object, ColorModel) - Static method in class loci.formats.gui.AWTImageTools
-
Scales the image using the Java2D API, with the
resultant image having the given color model.
- SCALE_BAR - Static variable in class loci.formats.in.LeicaHandler.ROI
-
- SCALE_BAR - Static variable in class loci.formats.in.LIFReader.ROI
-
- SCALE_BAR - Static variable in class loci.formats.in.ZeissLSMReader
-
- scaleAWT(BufferedImage, int, int, int) - Static method in class loci.formats.gui.AWTImageTools
-
Scales the image using the AWT Image API.
- scaleFactor - Variable in class loci.formats.in.FakeReader
-
Scale factor for gradient, if any.
- scaleFactor - Variable in class loci.formats.in.ZeissCZIReader
-
- scaleh - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- scalel - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- scaleX - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
The scaling factors.
- scaleX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Source to destination transform
- scaleX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The source -> destination transformation
- scaleX - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
The scaling factors.
- scaleX - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- scaleX - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The source -> destination transformation
- scaleX - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
The subsampling parameters.
- scaleX - Variable in class loci.formats.in.LeicaHandler.ROI
-
- scaleX - Variable in class loci.formats.in.LIFReader.ROI
-
- scaleY - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
The scaling factors.
- scaleY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Source to destination transform
- scaleY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The source -> destination transformation
- scaleY - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
The scaling factors.
- scaleY - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- scaleY - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The source -> destination transformation
- scaleY - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
The subsampling parameters.
- scaleY - Variable in class loci.formats.in.LeicaHandler.ROI
-
- scaleY - Variable in class loci.formats.in.LIFReader.ROI
-
- scaling - Variable in class loci.formats.in.SimplePCITiffReader
-
- Scaling() - Constructor for class loci.formats.in.ZeissTIFFHandler.Scaling
-
- scalingBitDepth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- scalings - Variable in class loci.formats.in.ZeissTIFFHandler
-
- scanData(byte[], int, boolean) - Static method in class loci.formats.ImageTools
-
Scan a plane for the channel min and max values.
- scanDim - Variable in class loci.formats.in.ZeissCZIReader
-
- scanDirectory(Location, boolean) - Method in class loci.formats.in.DicomReader
-
Scan the given directory for files that belong to this dataset.
- scanFormat(String, String) - Static method in class loci.formats.in.FV1000Reader
-
- SCANNERSET - Static variable in class loci.formats.in.LeicaReader
-
- ScanrHandler() - Constructor for class loci.formats.in.ScanrReader.ScanrHandler
-
- ScanrReader - Class in loci.formats.in
-
ScanrReader is the file format reader for Olympus ScanR datasets.
- ScanrReader() - Constructor for class loci.formats.in.ScanrReader
-
Constructs a new ScanR reader.
- ScanrReader.ScanrHandler - Class in loci.formats.in
-
- scanRX - Variable in class loci.formats.in.SDTInfo
-
- scanRY - Variable in class loci.formats.in.SDTInfo
-
- scanValues - Variable in class loci.formats.in.PrairieMetadata
-
Table of key/value pairs at the top level.
- scanw - Variable in class jj2000.j2k.image.DataBlk
-
The width of the scanlines used to store the data in the array
- scanw - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The width of the scanlines used to store the data in the array
- scanX - Variable in class loci.formats.in.SDTInfo
-
- scanY - Variable in class loci.formats.in.SDTInfo
-
- SCENE_CAPTURE_TYPE - Static variable in class loci.formats.tiff.IFD
-
- SCENE_CAPTURE_TYPE_LANDSCAPE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SceneCaptureType" tag.
- SCENE_CAPTURE_TYPE_NIGHT_SCENE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SceneCaptureType" tag.
- SCENE_CAPTURE_TYPE_PORTRAIT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SceneCaptureType" tag.
- SCENE_CAPTURE_TYPE_STANDARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SceneCaptureType" tag.
- SCENE_TYPE - Static variable in class loci.formats.tiff.IFD
-
- SCENE_TYPE_DSC - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SceneType" tag.
- SceneCaptureType() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SceneCaptureType
-
- SceneType() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SceneType
-
- SCHEMA_2010_03 - Static variable in class loci.formats.in.LeicaSCNReader
-
- SCHEMA_2010_10 - Static variable in class loci.formats.in.LeicaSCNReader
-
- SCHEMA_CLASSPATH_READER - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
Finds OME-XML schema definitions in specifications.jar.
- SCHEMA_PATH - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- SCHEMA_URL_PATTERN - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
The pattern of system ID URLs for OME-XML schema definitions.
- schemaType - Variable in class loci.formats.in.ZeissCZIReader.AttachmentEntry
-
- schemaType - Variable in class loci.formats.in.ZeissCZIReader.DirectoryEntry
-
- SCNHandler() - Constructor for class loci.formats.in.BioRadSCNReader.SCNHandler
-
- scoc - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- scod - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- SCOX_HOR_CB_PART - Static variable in interface jj2000.j2k.codestream.Markers
-
Horizontal code-block partition origin is at x=1
- SCOX_PRECINCT_PARTITION - Static variable in interface jj2000.j2k.codestream.Markers
-
Precinct used flag
- SCOX_USE_EPH - Static variable in interface jj2000.j2k.codestream.Markers
-
Use end of packet header marker
- SCOX_USE_SOP - Static variable in interface jj2000.j2k.codestream.Markers
-
Use start of packet marker
- SCOX_VER_CB_PART - Static variable in interface jj2000.j2k.codestream.Markers
-
Vertical code-block partition origin is at y=1
- SCREENING - Static variable in class loci.formats.in.FlexReader
-
- screenName - Variable in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- ScreenReader - Class in loci.formats.in
-
ScreenReader is a generic reader for files in non-HCS formats that have been
organized into a screen.
- ScreenReader() - Constructor for class loci.formats.in.ScreenReader
-
Constructs a new screen reader.
- SDTInfo - Class in loci.formats.in
-
SDTInfo encapsulates the header information for
Becker & Hickl SPC-Image SDT files.
- SDTInfo(RandomAccessInputStream, Hashtable) - Constructor for class loci.formats.in.SDTInfo
-
Constructs a new SDT header by reading values from the given input source,
populating the given metadata table.
- SDTReader - Class in loci.formats.in
-
SDTReader is the file format reader for
Becker & Hickl SPC-Image SDT files.
- SDTReader() - Constructor for class loci.formats.in.SDTReader
-
Constructs a new SDT reader.
- SDTWidgets - Class in loci.plugins.config
-
Custom widgets for configuring Bio-Formats SDT support.
- SDTWidgets() - Constructor for class loci.plugins.config.SDTWidgets
-
- SearchableWindow - Class in loci.plugins.util
-
Text panel with search capabilities.
- SearchableWindow(String, String, String, int, int) - Constructor for class loci.plugins.util.SearchableWindow
-
- SearchableWindow.SearchBox - Class in loci.plugins.util
-
- SearchBox(SearchableWindow) - Constructor for class loci.plugins.util.SearchableWindow.SearchBox
-
- searchBox - Variable in class loci.plugins.util.SearchableWindow.SearchBox
-
- searchPane - Variable in class loci.plugins.util.SearchableWindow.SearchBox
-
- SectorStreamSegmentMapper - Class in com.sun.media.imageio.stream
-
An implementation of the
StreamSegmentMapper interface
for segments of equal length.
- SectorStreamSegmentMapper(long[], int, int) - Constructor for class com.sun.media.imageio.stream.SectorStreamSegmentMapper
-
- SEED - Static variable in class loci.formats.in.FakeReader
-
- seek(long) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
Invokes the superclass method and sets the position within the
memory mapped buffer.
- seek(long) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
Invokes the superclass method, writes any unwritten data,
and sets the channel position to the supplied parameter.
- seek(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- seek(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- seek(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Moves the current position to the given offset at which the
next read or write occurs.
- seek(int) - Method in interface jj2000.j2k.io.RandomAccessIO
-
Moves the current position for the next read or write operation to
offset.
- seek(int) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Moves the current position for the next read operation to
offset.
- seekStartOfPlane(int, long, long) - Method in class loci.formats.in.LIFReader
-
- seekToImage(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- seekToNextMarker() - Method in class loci.formats.in.ZeissLMSReader
-
- seekToPlaneOffset(long, int, int) - Method in class loci.formats.FormatWriter
-
Seek to the given (x, y) coordinate of the image that starts at
the given offset.
- SEG_SYMB_CTXTS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The 4 contexts for the segmentation marker (always the UNIFORM context,
UNIF_CTXT)
- SEG_SYMBOL - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The 4 symbol segmentation marker (decimal 10, which is binary sequence
1010)
- SEG_SYMBOLS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The 4 symbol segmentation marker (1010)
- segLen - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
-
The length of each segment (used with regular termination or
in selective arithmetic bypass coding mode)
- segLengths - Variable in class jj2000.j2k.codestream.reader.PktInfo
-
The length of each terminated segment in the packet.
- Segment() - Constructor for class loci.formats.in.ZeissCZIReader.Segment
-
- Segment(String) - Constructor for class loci.formats.in.ZeissCZIReader.Segment
-
- Segment(ZeissCZIReader.Segment) - Constructor for class loci.formats.in.ZeissCZIReader.Segment
-
- SEGMENTATION_PATH - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- SegmentedImageInputStream - Class in com.sun.media.imageio.stream
-
A
SegmentedImageInputStream provides a view of a
subset of another ImageInputStream consiting of a series
of segments with given starting positions in the source stream and
lengths.
- SegmentedImageInputStream(ImageInputStream, StreamSegmentMapper) - Constructor for class com.sun.media.imageio.stream.SegmentedImageInputStream
-
Constructs a
SegmentedImageInputStream
given a ImageInputStream as input
and an instance of StreamSegmentMapper.
- SegmentedImageInputStream(ImageInputStream, long[], int[]) - Constructor for class com.sun.media.imageio.stream.SegmentedImageInputStream
-
Constructs a
SegmentedImageInputStream given a
ImageInputStream as input and a list of the starting
positions and lengths of the segments of the source stream.
- SegmentedImageInputStream(ImageInputStream, long[], int, int) - Constructor for class com.sun.media.imageio.stream.SegmentedImageInputStream
-
Constructs a
SegmentedImageInputStream given a
ImageInputStream as input, a list of the starting
positions of the segments of the source stream, the common
length of each segment, and the total length of the segments.
- segmentLength - Variable in class com.sun.media.imageio.stream.SectorStreamSegmentMapper
-
- segmentLength - Variable in class com.sun.media.imageio.stream.StreamSegment
-
- segmentLengths - Variable in class com.sun.media.imageio.stream.StreamSegmentMapperImpl
-
- segmentPositions - Variable in class com.sun.media.imageio.stream.SectorStreamSegmentMapper
-
- segmentPositions - Variable in class com.sun.media.imageio.stream.StreamSegmentMapperImpl
-
- segments - Variable in class loci.formats.in.ZeissCZIReader
-
- SeikoReader - Class in loci.formats.in
-
SeikoReader is the file format reader for Seiko .xqd/.xqf files.
- SeikoReader() - Constructor for class loci.formats.in.SeikoReader
-
Constructs a new Seiko reader.
- seleBand - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
Indicates whether subband is selected.
- seleBand - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
Indicates whether subband is selected.
- selectConvexHull(int[], double[], boolean[], int, boolean) - Method in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Compute the rate-distorsion slopes and selects those that lie in a
convex hull.
- SELECTED_CHANNELS - Static variable in class loci.formats.in.CellSensReader
-
- SELECTED_FRAMES - Static variable in class loci.formats.in.CellSensReader
-
- selectLine(int) - Method in class loci.plugins.util.SearchableWindow
-
- SEM_DOMAIN - Static variable in class loci.formats.FormatTools
-
Identifies the scanning electron microscopy domain.
- SENSING_METHOD - Static variable in class loci.formats.tiff.IFD
-
- SENSING_METHOD_COLOR_SEQUENTIAL_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SensingMethod" tag.
- SENSING_METHOD_COLOR_SEQUENTIAL_LINEAR_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SensingMethod" tag.
- SENSING_METHOD_NOT_DEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SensingMethod" tag.
- SENSING_METHOD_ONE_CHIP_COLOR_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SensingMethod" tag.
- SENSING_METHOD_THREE_CHIP_COLOR_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SensingMethod" tag.
- SENSING_METHOD_TRILINEAR_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SensingMethod" tag.
- SENSING_METHOD_TWO_CHIP_COLOR_AREA_SENSOR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SensingMethod" tag.
- SensingMethod() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SensingMethod
-
- SENSOR_KEYS - Static variable in class loci.formats.in.ICSReader
-
- sensorHeight - Variable in class loci.formats.in.MRWReader
-
- sensorWidth - Variable in class loci.formats.in.MRWReader
-
- separatedFork - Variable in class loci.formats.in.NativeQTReader
-
Flag indicating whether the resource and data fork are separated.
- SEQ_FILTERSET - Static variable in class loci.formats.in.LeicaReader
-
- SEQ_FILTERSET_END - Static variable in class loci.formats.in.LeicaReader
-
- SEQ_SCANNERSET - Static variable in class loci.formats.in.LeicaReader
-
- SEQ_SCANNERSET_END - Static variable in class loci.formats.in.LeicaReader
-
- SEQReader - Class in loci.formats.in
-
SEQReader is the file format reader for Image-Pro Sequence files.
- SEQReader() - Constructor for class loci.formats.in.SEQReader
-
Constructs a new Image-Pro SEQ reader.
- sequence - Variable in class loci.formats.in.PrairieMetadata.Frame
-
The
<Sequence> containing this <Frame>.
- Sequence(Element) - Constructor for class loci.formats.in.PrairieMetadata.Sequence
-
Creates a new sequence by parsing the given
<Sequence> element.
- sequence(int) - Method in class loci.formats.in.PrairieReader
-
Gets the first sequence associated with the given series.
- sequence(int, int) - Method in class loci.formats.in.PrairieReader
-
Gets the sequence associated with the given series and time point.
- sequence(int, int, int) - Method in class loci.formats.in.PrairieReader
-
Gets the sequence associated with the given time point and stage position.
- SEQUENCE_DELIMINATION - Static variable in class loci.formats.in.DicomReader
-
- sequenceComplete(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- sequences - Variable in class loci.formats.in.PrairieMetadata
-
<Sequence> elements, keyed on each sequence's cycle.
- sequences - Variable in class loci.formats.in.PrairieReader
-
List of Prairie metadata
Sequences, ordered by cycle.
- sequenceStarted(ImageReader, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- sequenceValues - Variable in class loci.formats.in.PrairieMetadata.Sequence
-
Table of key/value pairs for this
<Sequence>.
- sequential - Variable in class loci.formats.FormatWriter
-
Whether or not we are writing planes sequentially.
- sequential - Variable in class loci.formats.in.LeicaReader
-
- SEQUENTIALSET - Static variable in class loci.formats.in.LeicaReader
-
- sequentialTileFilePointer - Variable in class loci.formats.tiff.TiffSaver
-
- sequentialTileOffsets - Variable in class loci.formats.tiff.TiffSaver
-
Store tile offsets and original file pointer when writing sequentially.
- sequentialWrite - Variable in class loci.formats.tiff.TiffSaver
-
- ser - Variable in class loci.formats.Memoizer
-
- SERIALIZED_MASK - Static variable in class loci.formats.in.CellSensReader
-
- serialNumber - Variable in class loci.formats.in.BioRadSCNReader
-
- serialNumber - Variable in class loci.formats.in.LIFReader
-
- serialNumber - Variable in class loci.formats.in.NDPIReader
-
- serialVersionUID - Static variable in class org.libjpegturbo.turbojpeg.TJTransform
-
- series - Variable in class loci.formats.FileStitcher
-
The number of the current series (non flat).
- series - Variable in class loci.formats.FormatReader
-
The number of the current series (non flat).
- series - Variable in class loci.formats.FormatWriter
-
Current series.
- series - Variable in class loci.formats.gui.DataConverter
-
- series - Variable in class loci.formats.in.ColumbusReader.Plane
-
- SERIES - Static variable in class loci.formats.in.LeicaReader
-
IFD tags.
- series - Variable in class loci.formats.in.OBFReader.Frame
-
- series - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- series - Variable in class loci.formats.in.ZeissCZIReader.Coordinate
-
- series - Variable in class loci.plugins.macro.LociFunctions
-
- series - Variable in class loci.plugins.util.BFVirtualStack
-
- SERIES_NAME - Static variable in class loci.formats.FormatTools
-
- SERIES_NUM - Static variable in class loci.formats.FormatTools
-
Patterns to be used when constructing a pattern for output filenames.
- seriesCount - Variable in class loci.formats.in.CellH5Reader
-
- seriesCount - Variable in class loci.formats.in.ImarisHDFReader
-
- seriesCounts - Variable in class loci.formats.in.ZeissLSMReader
-
- seriesDescriptions - Variable in class loci.formats.in.LeicaReader
-
- SeriesDialog - Class in loci.plugins.in
-
Bio-Formats Importer series chooser dialog box.
- SeriesDialog(ImportProcess) - Constructor for class loci.plugins.in.SeriesDialog
-
Creates a series chooser dialog for the Bio-Formats Importer.
- seriesFiles - Variable in class loci.formats.in.ScanrReader
-
- seriesIndex - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- seriesInfo - Variable in class loci.formats.in.MNGReader
-
- SeriesInfo() - Constructor for class loci.formats.in.MNGReader.SeriesInfo
-
- SeriesInfo(int, int) - Constructor for class loci.plugins.in.ThumbLoader.SeriesInfo
-
- seriesLabels - Variable in class loci.plugins.in.ImportProcess
-
A descriptive label for each series.
- seriesMetadata - Variable in class loci.formats.CoreMetadata
-
Non-core metadata associated with this series.
- seriesNames - Variable in class loci.formats.in.LeicaReader
-
- seriesOn - Variable in class loci.plugins.in.ImporterOptions
-
- seriesRow - Variable in class loci.formats.gui.DataConverter
-
- seriesStream - Variable in class loci.formats.in.BrukerReader
-
- seriesToCoreIndex(int) - Method in class loci.formats.FileStitcher
-
- seriesToCoreIndex(int) - Method in class loci.formats.FormatReader
-
- seriesToCoreIndex(int) - Method in interface loci.formats.IFormatReader
-
Returns the first core index corresponding to the specified series.
- seriesToCoreIndex(int) - Method in class loci.formats.ImageReader
-
- seriesToCoreIndex(int) - Method in class loci.formats.in.FilePatternReader
-
- seriesToCoreIndex(int) - Method in class loci.formats.ReaderWrapper
-
- seriesToWellArea(int) - Method in class loci.formats.in.CellVoyagerReader
-
Returns the well index (in the field
CellVoyagerReader.wells) and the area index
(in the field CellVoyagerReader.WellInfo.areas corresponding to the specified
series.
- serverMap - Static variable in class loci.formats.in.FlexReader
-
Mapping from server names stored in the .mea file to actual server names.
- service - Variable in class loci.formats.codec.JPEG2000Codec
-
- service - Variable in class loci.formats.codec.JPEGXRCodec
-
- service - Variable in class loci.formats.codec.LuraWaveCodec
-
- service - Variable in class loci.formats.FormatReader
-
- service - Variable in class loci.formats.in.CellWorxReader
-
- service - Variable in class loci.formats.in.HamamatsuVMSReader
-
- service - Variable in class loci.formats.in.NDPIReader
-
- service - Variable in class loci.formats.in.OMETiffReader
-
- service - Variable in class loci.formats.in.TileJPEGReader
-
- service - Variable in class loci.formats.Memoizer
-
- service - Variable in class loci.formats.out.OMETiffWriter
-
- service - Variable in class loci.formats.out.OMEXMLWriter
-
- serviceRegistry - Variable in class loci.formats.services.JAIIIOServiceImpl
-
- set(String, String) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to value.
- set(List<T>, int, T, T) - Method in class loci.plugins.in.ImporterOptions
-
- set(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- set(int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setActiveSrcHeight(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
activeSrcHeight field.
- setActiveSrcHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setActiveSrcMinX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
activeSrcMinX field.
- setActiveSrcMinX(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setActiveSrcMinY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
activeSrcMinY field.
- setActiveSrcMinY(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setActiveSrcWidth(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
activeSrcWidth field.
- setActiveSrcWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setAlignROI(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
alignROI
- setAllowOpenFiles(boolean) - Method in class loci.formats.ImageReader
-
Toggles whether or not file system access is allowed when doing type
detection.
- setAntialiasedText(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setAssumeEqualStrips(boolean) - Method in class loci.formats.tiff.TiffParser
-
Sets whether or not to assume that strips are of equal size.
- setAutomaticallyParseMasks(boolean) - Method in class loci.formats.in.MIASReader
-
Toggle whether or not Mask pixel data should be parsed in setId.
- setAutoscale(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setAutoThreshold(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setAxisTypes(int[]) - Method in class loci.formats.AxisGuesser
-
Sets the axis type for each dimensional block.
- setAxisTypes(int[]) - Method in class loci.formats.FileStitcher
-
Sets the axis type for each dimensional block.
- setBackgroundValue(double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setBigTiff(boolean) - Method in class loci.formats.out.TiffWriter
-
Sets whether or not BigTIFF files should be written.
- setBigTiff(boolean) - Method in class loci.formats.tiff.TiffSaver
-
Sets whether or not BigTIFF data should be written.
- setBitOffset(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- setBitsPerSample(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
bitsPerSample field.
- setBitsPerSample(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setBoolean(String, Boolean) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to Boolean value.
- setBypass(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
bypass
- setByte(int, int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to set a Byte value in the SPE header
- setByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteInputBuffer
-
Sets the underlying buffer byte array to the given one, with the given
offset and length.
- setByteArray(byte[], int, int) - Method in class jj2000.j2k.entropy.decoder.ByteToBitInput
-
Resets the underlying byte input to start a new segment.
- setByteCount(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
byteCount field.
- setByteCount(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setByteOrder(ByteOrder) - Method in class com.sun.media.imageio.stream.FileChannelImageInputStream
-
- setByteOrder(ByteOrder) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- setByteOrder(ByteOrder) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- setCalibrationTable(float[]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setCanChangePattern(boolean) - Method in class loci.formats.FileStitcher
-
- setCanDoUpgradeCheck(boolean) - Method in class loci.formats.UpgradeChecker
-
Set whether or not we are ever allowed to perform an upgrade check.
- setCanLookForND(boolean) - Method in class loci.formats.in.MetamorphReader
-
- setCategory(int) - Method in class loci.formats.in.BaseZeissReader.Tag
-
- setCausalCXInfo(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
causalCXInfo
- setCBegin(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setCEnd(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setChannelGlobalMinMax(int, double, double, int) - Method in interface loci.formats.meta.IMinMaxStore
-
Populates the channel global minimum and maximum.
- setClass(String, Class<?>) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to Class value.
- setClipRect(Rectangle) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setCodeBlockSize(int[]) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
codeBlockSize.
- setCodeBlockSize(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
codeBlockSize
- setCodec(int) - Method in class loci.formats.out.LegacyQTWriter
-
Sets the encoded movie's codec.
- setCodec(int) - Method in class loci.formats.out.QTWriter
-
Sets the encoded movie's codec.
- setCodec() - Method in class loci.formats.out.QTWriter
-
- setCodecOptions(CodecOptions) - Method in class loci.formats.FormatWriter
-
- setCodecOptions(CodecOptions) - Method in interface loci.formats.IFormatWriter
-
Sets the codec options.
- setCodecOptions(CodecOptions) - Method in class loci.formats.ImageWriter
-
- setCodecOptions(CodecOptions) - Method in class loci.formats.tiff.TiffParser
-
Sets the codec options to be used when decompressing pixel data.
- setCodecOptions(CodecOptions) - Method in class loci.formats.tiff.TiffSaver
-
Sets the codec options.
- setCodecOptions(CodecOptions) - Method in class loci.formats.WriterWrapper
-
- setCodeSegSymbol(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
codeSegSymbol
- setColor(Color) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setColor(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setColorConverter(TIFFColorConverter) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the
TIFFColorConverter object describing the color
space of the encoded data in the input stream.
- setColorConverter(TIFFColorConverter) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Sets the
TIFFColorConverter object for the pixel data
being read.
- setColorConverter(TIFFColorConverter, int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
Sets the
TIFFColorConverter object describing the
color space to which the input data should be converted for
storage in the input stream.
- setColorMap(char[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
colorMap field.
- setColorMap(char[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setColorMode(String) - Method in class loci.plugins.in.ImporterOptions
-
- setColorModel(ColorModel) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- setColorModel(ColorModel) - Method in class loci.formats.FormatWriter
-
- setColorModel(ColorModel) - Method in interface loci.formats.IFormatWriter
-
Sets the color model.
- setColorModel(ColorModel) - Method in class loci.formats.ImageWriter
-
- setColorModel(ColorModel) - Method in class loci.formats.WriterWrapper
-
- setColorModel(ColorModel) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setCompDef(int, Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Sets default value for specified component and specValType tag if
allowed by its priority.
- setCompDef(int, Object) - Method in class jj2000.j2k.ModuleSpec
-
Sets default value for specified component and specValType tag if
allowed by its priority.
- setComponentTransformation(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
componentTransformation.
- setComponentTransformation(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
componentTransformation
- setCompression(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
compression field.
- setCompression(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setCompression(String) - Method in class loci.formats.FormatWriter
-
- setCompression(String) - Method in interface loci.formats.IFormatWriter
-
Sets the current compression type.
- setCompression(String) - Method in class loci.formats.ImageWriter
-
- setCompression(String) - Method in class loci.formats.WriterWrapper
-
- setCompressionMode(int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriteParam
-
- setCompressionType(String) - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Sets the compression type to one of the values indicated by
getCompressionTypes.
- setConcatenate(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setContent(byte[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Sets the box content.
- setCoreIndex(int) - Method in class loci.formats.DelegateReader
-
- setCoreIndex(int) - Method in class loci.formats.FileStitcher
-
- setCoreIndex(int) - Method in class loci.formats.FormatReader
-
- setCoreIndex(int) - Method in interface loci.formats.IFormatReader
-
Set the current resolution/series (ignores subresolutions).
- setCoreIndex(int) - Method in class loci.formats.ImageReader
-
- setCoreIndex(int) - Method in class loci.formats.in.FilePatternReader
-
- setCoreIndex(int) - Method in class loci.formats.ReaderWrapper
-
- setCrop(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setCropRegion(int, Region) - Method in class loci.plugins.in.ImporterOptions
-
- setCStep(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setCurrentPos(int[]) - Method in class loci.formats.cache.Cache
-
Sets the current dimensional position.
- setCustomColor(int, int, Color) - Method in class loci.plugins.in.ImporterOptions
-
- setData(Object) - Method in class jj2000.j2k.image.DataBlk
-
Sets the data array to the specified one.
- setData(Object) - Method in class jj2000.j2k.image.DataBlkFloat
-
Sets the data array to the specified one.
- setData(Object) - Method in class jj2000.j2k.image.DataBlkInt
-
Sets the data array to the specified one.
- setData(Object) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
Sets the data array to the specified one.
- setData(Object) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
Sets the data array to the specified one.
- setData(Object) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
Sets the data array to the specified one.
- setDataFloat(float[]) - Method in class jj2000.j2k.image.DataBlkFloat
-
Sets the data array to the specified one.
- setDataFloat(float[]) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataFloat
-
Sets the data array to the specified one.
- setDataInt(int[]) - Method in class jj2000.j2k.image.DataBlkInt
-
Sets the data array to the specified one.
- setDataInt(int[]) - Method in class jj2000.j2k.wavelet.analysis.CBlkWTDataInt
-
Sets the data array to the specified one.
- setDataType(String) - Method in class loci.formats.in.InveonReader
-
- setDecodingRate(double) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
-
Sets
decodingRate.
- setDecompositionLevel(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
decompositionLevel
- setDefault(Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Sets default value for this module
- setDefault(Object) - Method in class jj2000.j2k.ModuleSpec
-
Sets default value for this module
- setDefaultAttributes(IIOMetadataNode) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Sets the default attributes, "Length", "Type", and "ExtraLength", to
the provided
IIOMetadataNode.
- setDefaultCreationDate(MetadataStore, String, int) - Static method in class loci.formats.MetadataTools
-
Sets a default creation date.
- setDefaultDateEnabled(boolean) - Static method in class loci.formats.MetadataTools
-
Disables the setting of a default creation date.
- setDefaults() - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Set source
- setDefaults(Raster) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Set source
- setDefaults(RenderedImage) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Set source
- setDefaults() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
- setDestImage(BufferedImage) - Method in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- setDestinationBands(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
destinationBands field.
- setDestinationBands(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setDimensions(int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- setDoCaching(boolean) - Method in class loci.formats.tiff.TiffParser
-
Sets whether or not IFD entries should be cached.
- setDocument(Document) - Method in class loci.formats.gui.XMLWindow
-
Displays XML from the given document.
- setDocumentLocator(Locator) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler
-
- setDoRecording(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setDouble(String, Double) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to Double value.
- setDstHeight(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
dstHeight field.
- setDstHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setDstMinX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
dstMinX field.
- setDstMinX(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setDstMinY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
dstMinY field.
- setDstMinY(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setDstWidth(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
dstWidth field.
- setDstWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setDstXOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
dstXOffset field.
- setDstXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setDstYOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
dstYOffset field.
- setDstYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setElem(int, int) - Method in class loci.formats.gui.SignedByteBuffer
-
- setElem(int, int, int) - Method in class loci.formats.gui.SignedByteBuffer
-
- setElem(int, int, int) - Method in class loci.formats.gui.SignedShortBuffer
-
- setElem(int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- setElem(int, int, int) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- setElemDouble(int, double) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- setElemDouble(int, int, double) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- setElemFloat(int, float) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- setElemFloat(int, int, float) - Method in class loci.formats.gui.UnsignedIntBuffer
-
- setEncodingRate(double) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
encodingRate.
- setEncodingRate(double) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
encodingRate
- setEnum(String, T) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to enumerated type value.
- setEPH(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
EPH.
- setEPH(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
EPH
- setExtraLength(long) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Sets the box extra length length to the provided value.
- setExtraSamples(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
extraSamples field.
- setExtraSamples(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setf(int, float) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setf(int, int, float) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setFile(String, File) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to file object value.
- setFile(String) - Method in interface loci.formats.services.JHDFService
-
Initializes the service on a given file path.
- setFile(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- setFile(String) - Method in interface loci.formats.services.NetCDFService
-
Initializes the service on a given file path.
- setFile(String) - Method in class loci.formats.services.NetCDFServiceImpl
-
- setFileForWrite(String) - Method in interface loci.formats.services.JHDFService
-
Initializes the service on a given file path.
- setFileForWrite(String) - Method in class loci.formats.services.JHDFServiceImpl
-
- setFilled(boolean) - Method in class loci.formats.ChannelFiller
-
Toggles whether the indices should be factored out.
- setFilter(String) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
filter.
- setFilters(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
filters
- setFirstTime(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setFixed() - Method in class loci.formats.FilePatternBlock
-
- setFlattenedResolutions(boolean) - Method in class loci.formats.DelegateReader
-
- setFlattenedResolutions(boolean) - Method in class loci.formats.FormatReader
-
- setFlattenedResolutions(boolean) - Method in interface loci.formats.IFormatReader
-
Set whether or not to flatten resolutions into individual series.
- setFlattenedResolutions(boolean) - Method in class loci.formats.ImageReader
-
- setFlattenedResolutions(boolean) - Method in class loci.formats.in.FilePatternReader
-
- setFlattenedResolutions(boolean) - Method in class loci.formats.ReaderWrapper
-
- setFloat(String, Float) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to Float value.
- setFloatArray(float[][]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setFont(Font) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setForceThumbnails(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setFramesPerSecond(int) - Method in class loci.formats.FormatWriter
-
- setFramesPerSecond(int) - Method in interface loci.formats.IFormatWriter
-
Sets the frames per second to use when writing.
- setFramesPerSecond(int) - Method in class loci.formats.ImageWriter
-
- setFramesPerSecond(int) - Method in class loci.formats.WriterWrapper
-
- setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableImageMetadata
-
- setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFWritableStreamMetadata
-
- setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadata
-
- setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- setFromTree(String, Node) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- setGroupFiles(boolean) - Method in class loci.formats.DelegateReader
-
- setGroupFiles(boolean) - Method in class loci.formats.FileStitcher
-
- setGroupFiles(boolean) - Method in class loci.formats.FormatReader
-
- setGroupFiles(boolean) - Method in interface loci.formats.IFormatReader
-
Specifies whether or not to force grouping in multi-file formats.
- setGroupFiles(boolean) - Method in class loci.formats.ImageReader
-
- setGroupFiles(boolean) - Method in class loci.formats.in.FilePatternReader
-
- setGroupFiles(boolean) - Method in class loci.formats.in.ZipReader
-
- setGroupFiles(boolean) - Method in class loci.formats.ReaderWrapper
-
- setGroupFiles(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setGroupFiles(String) - Method in class loci.plugins.macro.LociFunctions
-
- setGuardBits(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
guardBits
- setHeader(byte[]) - Method in class loci.formats.in.SPEReader.SpeHeader
-
- setHeaderEncoder(HeaderEncoder) - Method in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
Keep a reference to the header encoder.
- setHeight(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- setHints(int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- setHistogramRange(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setHistogramSize(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setId(String) - Method in class loci.formats.ChannelFiller
-
- setId(String) - Method in class loci.formats.ChannelSeparator
-
- setId(String) - Method in class loci.formats.DelegateReader
-
- setId(String) - Method in class loci.formats.DimensionSwapper
-
- setId(String) - Method in class loci.formats.FileStitcher
-
- setId(String) - Method in class loci.formats.FormatReader
-
Initializes a reader from the input file name.
- setId(String) - Method in class loci.formats.FormatWriter
-
Initializes a writer from the input file name.
- setId(String) - Method in interface loci.formats.IFormatHandler
-
Sets the current file name.
- setId(String) - Method in class loci.formats.ImageReader
-
- setId(String) - Method in class loci.formats.ImageWriter
-
- setId(String) - Method in class loci.formats.in.JPEGReader
-
- setId(String) - Method in class loci.formats.Memoizer
-
- setId(String) - Method in class loci.formats.out.APNGWriter
-
- setId(String) - Method in class loci.formats.out.AVIWriter
-
- setId(String) - Method in class loci.formats.out.CellH5Writer
-
- setId(String) - Method in class loci.formats.out.ICSWriter
-
- setId(String) - Method in class loci.formats.out.JavaWriter
-
- setId(String) - Method in class loci.formats.out.OMETiffWriter
-
- setId(String) - Method in class loci.formats.out.OMEXMLWriter
-
- setId(String) - Method in class loci.formats.out.QTWriter
-
- setId(String) - Method in class loci.formats.out.TiffWriter
-
- setId(String) - Method in class loci.formats.out.V3DrawWriter
-
- setId(String) - Method in class loci.formats.out.WlzWriter
-
- setId(String) - Method in class loci.formats.ReaderWrapper
-
- setId(String) - Method in class loci.formats.TileStitcher
-
- setId(String) - Method in class loci.formats.WriterWrapper
-
- setId(String) - Method in class loci.plugins.in.ImporterOptions
-
- setId() - Method in class loci.plugins.in.ImportProcess
-
HACK: This method mainly exists to prompt the user for a missing
LuraWave license code, in the case of LWF-compressed Flex.
- setId(String) - Method in class loci.plugins.macro.LociFunctions
-
- setImage(BufferedImage) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
image field.
- setImage(BufferedImage) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setImages(BufferedImage[]) - Method in class loci.formats.gui.ImageViewer
-
Sets the viewer to display the given images.
- setImages(IFormatReader, BufferedImage[]) - Method in class loci.formats.gui.ImageViewer
-
Sets the viewer to display the given images, obtaining
corresponding core metadata from the specified format reader.
- setImgResLevel(int) - Method in interface jj2000.j2k.wavelet.synthesis.InvWT
-
Sets the image reconstruction resolution level.
- setImgResLevel(int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Sets the image reconstruction resolution level.
- setIndex(int) - Method in class loci.formats.in.BaseZeissReader.Tag
-
- setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
Overrides the method defined in the superclass.
- setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Overrides the method defined in the superclass.
- setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
Overrides the method defined in the superclass.
- setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageReader
-
Overrides the method defined in the superclass.
- setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- setInput(Object, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
Overrides the method defined in the superclass.
- setInput(RandomAccessIO) - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Sets the underlying byte based input to the given object.
- setInput(ByteArrayInputStream) - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Sets the underlying byte based input to the given object.
- setInputOrder(int, String) - Method in class loci.plugins.in.ImporterOptions
-
- setInt(int, int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to set an Integer value in the SPE header
- setIntArray(int[][]) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setInteger(String, Integer) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to Integer value.
- setIntensity(boolean) - Method in class loci.formats.in.SDTReader
-
Toggles whether the reader should return intensity
data only (the sum of each lifetime histogram).
- setInterleaved(boolean) - Method in class loci.formats.FormatWriter
-
- setInterleaved(boolean) - Method in interface loci.formats.IFormatWriter
-
Sets whether or not the channels in an image are interleaved.
- setInterleaved(boolean) - Method in class loci.formats.ImageWriter
-
- setInterleaved(boolean) - Method in class loci.formats.WriterWrapper
-
- setInterpolate(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setJPEGImage(byte[], int) - Method in class org.libjpegturbo.turbojpeg.TJDecompressor
-
Associate the JPEG image of length
imageSize bytes stored in
jpegImage with this decompressor instance.
- setJPEGQuality(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Set the JPEG image quality level for subsequent compress operations.
- setJustification(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setKey(int) - Method in class loci.formats.in.BaseZeissReader.Tag
-
- setKeyValue(String, String) - Method in class loci.formats.meta.OriginalMetadataAnnotation
-
Set the key/value metadata pair for this annotation.
- setLayers(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets the
layers
- setLegacy(boolean) - Method in class loci.formats.DelegateReader
-
Sets whether to use the legacy reader by default.
- setLegacy(boolean) - Method in class loci.formats.in.PictReader
-
Control whether or not legacy reader (QT Java) is used.
- setLenCalcType(int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Set the length calculation type to the specified type
- setLength(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Sets the box length to the provided value.
- setLicenseCode(String) - Method in interface loci.formats.services.LuraWaveService
-
Overrides the license code to use when initializing the LuraWave decoder.
- setLicenseCode(String) - Method in class loci.formats.services.LuraWaveServiceImpl
-
- setLineWidth(int) - Method in class jj2000.j2k.util.MsgPrinter
-
Sets the line width to the specified value.
- setLineWidth(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setLittleEndian(boolean) - Method in class loci.formats.tiff.TiffSaver
-
Sets whether or not little-endian data should be written.
- setLocation(String) - Method in class loci.plugins.in.ImporterOptions
-
- setLong(String, Long) - Method in class loci.formats.in.DynamicMetadataOptions
-
Set property
name to Long value.
- setLong(int, int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to set a Long value in the SPE header
- setLossless(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
lossless.
- setLossless(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
lossless
- setLutAnimation(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setLUTs(LUT[]) - Method in class loci.plugins.util.VirtualImagePlus
-
- setMainCompDefDecompType(int, int, int) - Method in class jj2000.j2k.wavelet.WTDecompSpec
-
Sets the "component main default" decomposition type and number of
levels for the specified component.
- setMask(ImageProcessor) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setMaxBitDepth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
Set the maximum sample size and maximum sample value.
- setMetadata(IIOMetadata) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Sets the value of the
metadata field.
- setMetadata(IIOMetadata) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
metadata field.
- setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFEXIFJPEGCompressor
-
- setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Sets the value of the
metadata field.
- setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor
-
Sets the value of the
metadata field.
- setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor
-
Sets the value of the
metadata field.
- setMetadata(IIOMetadata) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setMetadataFiltered(boolean) - Method in class loci.formats.DelegateReader
-
- setMetadataFiltered(boolean) - Method in class loci.formats.FormatReader
-
- setMetadataFiltered(boolean) - Method in interface loci.formats.IFormatReader
-
Specifies whether ugly metadata (entries with unprintable characters,
and extremely large entries) should be discarded from the metadata table.
- setMetadataFiltered(boolean) - Method in class loci.formats.ImageReader
-
- setMetadataFiltered(boolean) - Method in class loci.formats.in.FilePatternReader
-
- setMetadataFiltered(boolean) - Method in class loci.formats.ReaderWrapper
-
- setMetadataFiltered(String) - Method in class loci.plugins.macro.LociFunctions
-
- setMetadataLevel(MetadataLevel) - Method in class loci.formats.in.DefaultMetadataOptions
-
- setMetadataLevel(MetadataLevel) - Method in class loci.formats.in.DynamicMetadataOptions
-
- setMetadataLevel(MetadataLevel) - Method in interface loci.formats.in.MetadataOptions
-
Set the metadata level.
- setMetadataOptions(MetadataOptions) - Method in class loci.formats.DelegateReader
-
- setMetadataOptions(MetadataOptions) - Method in class loci.formats.FileStitcher
-
- setMetadataOptions(MetadataOptions) - Method in class loci.formats.FormatHandler
-
- setMetadataOptions(MetadataOptions) - Method in class loci.formats.ImageReader
-
- setMetadataOptions(MetadataOptions) - Method in class loci.formats.ImageWriter
-
- setMetadataOptions(MetadataOptions) - Method in interface loci.formats.IMetadataConfigurable
-
- setMetadataOptions(MetadataOptions) - Method in class loci.formats.ReaderWrapper
-
- setMetadataOptions(MetadataOptions) - Method in class loci.formats.WriterWrapper
-
- setMetadataRetrieve(MetadataRetrieve) - Method in class loci.formats.FormatWriter
-
- setMetadataRetrieve(MetadataRetrieve) - Method in interface loci.formats.IFormatWriter
-
Sets the metadata retrieval object from
which to retrieve standardized metadata.
- setMetadataRetrieve(MetadataRetrieve) - Method in class loci.formats.ImageWriter
-
- setMetadataRetrieve(MetadataRetrieve) - Method in class loci.formats.WriterWrapper
-
- setMetadataStore(MetadataStore) - Method in class loci.formats.DelegateReader
-
- setMetadataStore(MetadataStore) - Method in class loci.formats.FileStitcher
-
- setMetadataStore(MetadataStore) - Method in class loci.formats.FormatReader
-
- setMetadataStore(MetadataStore) - Method in interface loci.formats.IFormatReader
-
Sets the default metadata store for this reader.
- setMetadataStore(MetadataStore) - Method in class loci.formats.ImageReader
-
- setMetadataStore(MetadataStore) - Method in class loci.formats.in.FilePatternReader
-
- setMetadataStore(MetadataStore) - Method in class loci.formats.Memoizer
-
- setMetadataStore(MetadataStore) - Method in class loci.formats.ReaderWrapper
-
- setMethodForMQLengthCalc(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
methodForMQLengthCalc
- setMethodForMQTermination(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
methodForMQTermination
- setMinAndMax(double, double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setMinMaxStore(IMinMaxStore) - Method in class loci.formats.MinMaxCalculator
-
Sets the active min-max store for the calculator.
- setMinX(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
minX
- setMinY(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
minY
- setModulo(OMEXMLMetadata, Modulo) - Method in class loci.formats.meta.ModuloAnnotation
-
Set the value of this annotation using the given Modulo object
- setMustGroup(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setNormalized(boolean) - Method in class loci.formats.DelegateReader
-
- setNormalized(boolean) - Method in class loci.formats.FileStitcher
-
- setNormalized(boolean) - Method in class loci.formats.FormatReader
-
- setNormalized(boolean) - Method in interface loci.formats.IFormatReader
-
Specifies whether or not to normalize float data.
- setNormalized(boolean) - Method in class loci.formats.ImageReader
-
- setNormalized(boolean) - Method in class loci.formats.in.FilePatternReader
-
- setNormalized(boolean) - Method in class loci.formats.ReaderWrapper
-
- setNormalized(Boolean) - Method in class loci.plugins.macro.LociFunctions
-
- setNoROIDescaling(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
-
Sets
noROIDescaling
- setNumDecompositionLevels(int) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
numDecompositionLevels.
- setNumeric() - Method in class loci.formats.FilePatternBlock
-
- setOffset(long) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
offset field.
- setOffset(long) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setOffsetInfo(int, int, int, int) - Method in class loci.formats.in.DeltavisionReader
-
This method calculates the size of a w, t, z section depending on which
sequence is being used (either ZTW, WZT, or ZWT)
- setOpenAllSeries(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setOrder(int, int) - Method in class loci.formats.cache.CacheStrategy
-
- setOrder(int, int) - Method in interface loci.formats.cache.ICacheStrategy
-
Sets the order in which objects should be loaded along each axis.
- setOriginalMetadataPopulated(boolean) - Method in class loci.formats.DelegateReader
-
- setOriginalMetadataPopulated(boolean) - Method in class loci.formats.FileStitcher
-
- setOriginalMetadataPopulated(boolean) - Method in class loci.formats.FormatReader
-
- setOriginalMetadataPopulated(boolean) - Method in interface loci.formats.IFormatReader
-
Specifies whether or not to save proprietary metadata
in the MetadataStore.
- setOriginalMetadataPopulated(boolean) - Method in class loci.formats.ImageReader
-
- setOriginalMetadataPopulated(boolean) - Method in class loci.formats.in.FilePatternReader
-
- setOriginalMetadataPopulated(boolean) - Method in class loci.formats.ReaderWrapper
-
- setOriginalMetadataPopulated(Boolean) - Method in class loci.plugins.macro.LociFunctions
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- setOutput(Object) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- setOutputOrder(String) - Method in class loci.formats.DimensionSwapper
-
Sets the output dimension order according to the given string (e.g.,
"XYZCT").
- setOutputOrder(String) - Method in class loci.formats.out.ICSWriter
-
Set the order in which dimensions should be written to the file.
- setOutputOrder(String) - Method in class loci.formats.out.V3DrawWriter
-
Set the order in which dimensions should be written to the file.
- setOutputOrder(String) - Method in class loci.formats.out.WlzWriter
-
Set the order in which dimensions should be written to the file.
- setPackedBinaryData(byte[], WritableRaster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Sets the supplied
Raster's data from an array
of packed binary data of the form returned by
getPackedBinaryData().
- setPacketPerTilePart(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
packetPerTilePart
- setPackPacketHeaderInMain(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
packPacketHeaderInMain
- setPackPacketHeaderInTile(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
packPacketHeaderInTile
- setParsingEnabled(boolean) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReadParamJava
-
Sets
parsingEnabled
- setPhotometricInterpretation(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
photometricInterpretation
field.
- setPhotometricInterpretation(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setPixels(int, int, int, int, ColorModel, byte[], int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- setPixels(int, int, int, int, ColorModel, int[], int, int) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- setPixels() - Method in class loci.formats.in.GIFReader
-
- setPixels(int, FloatProcessor) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setPixels(Object) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setPlanar(boolean) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
planar field.
- setPlanar(boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setPlaneIndexes(int[]) - Method in class loci.plugins.util.BFVirtualStack
-
- setPositions(long, long, long) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- setPrecinctPartition(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
precinctPartition
- setPredTerm(boolean) - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
Set the flag according to whether or not the predictable termination is
requested.
- setPreLoad(boolean) - Method in class loci.formats.in.SDTReader
-
Toggles whether the reader should pre-load data for increased performance.
- setPriority(int, int) - Method in class loci.formats.cache.CacheStrategy
-
- setPriority(int, int) - Method in interface loci.formats.cache.ICacheStrategy
-
Sets the priority for caching the given axis.
- setProgressBar(ProgressBar) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setProgressionName(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
progressionName
- setProgressionType(String) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
progressionType.
- setProgressionType(LayersInfo, String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
progressionType
- setProperties(Hashtable) - Method in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- setQuality(int) - Method in class loci.formats.out.LegacyQTWriter
-
Sets the quality of the encoded movie.
- setQuality(int) - Method in class loci.formats.out.QTWriter
-
Sets the quality of the encoded movie.
- setQuantizationStep(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
quantizationStep
- setQuantizationType(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
quantizationType
- setQuiet(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setRange(int, int) - Method in class loci.formats.cache.CacheStrategy
-
- setRange(int, int) - Method in interface loci.formats.cache.ICacheStrategy
-
Sets the number of objects to cache along the given axis.
- setRaw(boolean) - Method in class com.sun.media.imageio.plugins.pnm.PNMImageWriteParam
-
Sets the representation to be used.
- setReader(ImageReader) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
reader field.
- setReader(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setReader(IFormatReader) - Method in class loci.plugins.util.VirtualImagePlus
-
- setReaderClassList(ClassList<IFormatReader>) - Method in class loci.formats.FileStitcher
-
Set the ClassList object to use when constructing any helper readers.
- setReaderEnabled(FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow
-
- setReaderPref(String, FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow
-
- setReaderWindowless(FormatEntry, boolean) - Method in class loci.plugins.config.ConfigWindow
-
- setRefCount(int) - Method in class loci.plugins.util.VirtualReader
-
- setResetMQ(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
resetMQ
- setResolution(int) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageReadParam
-
Sets
resolution.
- setResolution(int) - Method in class loci.formats.DelegateReader
-
- setResolution(int) - Method in class loci.formats.FormatReader
-
- setResolution(int) - Method in interface loci.formats.IFormatReader
-
Set the resolution level.
- setResolution(int) - Method in class loci.formats.ImageReader
-
- setResolution(int) - Method in class loci.formats.in.FilePatternReader
-
- setResolution(int) - Method in class loci.formats.ReaderWrapper
-
- setResolutionLevel(IFD) - Method in class loci.formats.in.MinimalTiffReader
-
Sets the resolution level when we have JPEG 2000 compressed data.
- setRestartMarkers(long[]) - Method in interface loci.formats.services.JPEGTurboService
-
- setRestartMarkers(long[]) - Method in class loci.formats.services.JPEGTurboServiceImpl
-
- setRoi(int, int, int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setRoi(Polygon) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setRoi(Rectangle) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setRoi(Roi) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setROIs(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
ROIs
- setROIsMode(String) - Method in class loci.plugins.in.ImporterOptions
-
- setSampleFormat(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
sampleFormat field.
- setSampleFormat(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSampleModelAndMore() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- setSamplesPerPixel(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
samplesPerPixel field.
- setSamplesPerPixel(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSegmentLength(int) - Method in class com.sun.media.imageio.stream.StreamSegment
-
Sets the length of the segment.
- setSeries(int) - Method in class loci.formats.DelegateReader
-
- setSeries(int) - Method in class loci.formats.FileStitcher
-
- setSeries(int) - Method in class loci.formats.FormatReader
-
- setSeries(int) - Method in class loci.formats.FormatWriter
-
- setSeries(int) - Method in interface loci.formats.IFormatReader
-
Activates the specified series.
- setSeries(int) - Method in interface loci.formats.IFormatWriter
-
Sets the current series.
- setSeries(int) - Method in class loci.formats.ImageReader
-
- setSeries(int) - Method in class loci.formats.ImageWriter
-
- setSeries(int) - Method in class loci.formats.in.FilePatternReader
-
- setSeries(int) - Method in class loci.formats.in.IM3Reader
-
- setSeries(int) - Method in class loci.formats.in.ZeissLSMReader
-
- setSeries(int) - Method in class loci.formats.ReaderWrapper
-
- setSeries(int) - Method in class loci.formats.WriterWrapper
-
- setSeries(Double) - Method in class loci.plugins.macro.LociFunctions
-
- setSeriesList(String) - Method in class loci.plugins.in.ImportProcess
-
- setSeriesOn(int, boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setShort(int, int) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to set a Short value in the SPE header
- setShowMetadata(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setShowOMEXML(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setShowROIs(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setSize(int) - Method in class loci.formats.tiff.OnDemandLongArray
-
- setSlice(int) - Method in class loci.plugins.util.VirtualImagePlus
-
- setSnapshotCopyMode(boolean) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setSnapshotPixels(Object) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setSOP(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
SOP.
- setSOP(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
SOP
- setSource(ICacheSource) - Method in class loci.formats.cache.Cache
-
Sets the cache's caching source.
- setSourceBands(int[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
sourceBands field.
- setSourceBands(int[]) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Override the method setSourceBands in the super class.
- setSourceBands(int[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSourceImage(byte[], int, int, int, int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Associate an uncompressed source image with this compressor instance.
- setSourceSubsampling(int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Override the method setSourceSubsampling in the super class.
- setSourceXOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
sourceXOffset field.
- setSourceXOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSourceYOffset(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
sourceYOffset.
- setSourceYOffset(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSpecifyRanges(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setSplitChannels(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setSplitFocalPlanes(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setSplitTimepoints(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setSrcHeight(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
srcHeight field.
- setSrcHeight(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSrcMinX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
srcMinX field.
- setSrcMinX(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSrcMinY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
srcMinY field.
- setSrcMinY(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setSrcWidth(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
srcWidth field.
- setSrcWidth(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setStackFormat(String) - Method in class loci.plugins.in.ImporterOptions
-
- setStackOrder(String) - Method in class loci.plugins.in.ImporterOptions
-
- setStartLevelROI(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets the
startLevelROI
- setStartPos(long) - Method in class com.sun.media.imageio.stream.StreamSegment
-
Sets the starting position of the segment.
- setStitchTiles(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setStrategy(ICacheStrategy) - Method in class loci.formats.cache.Cache
-
Sets the cache's caching strategy.
- setStream(ImageOutputStream) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Sets the
ImageOutputStream to be written.
- setStream(ImageInputStream) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
stream field.
- setStream(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor
-
- setStream(ImageInputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- setStream(RandomAccessInputStream) - Method in class loci.formats.tiff.OnDemandLongArray
-
- setString(int, String) - Method in class loci.formats.in.SPEReader.SpeHeader
-
Private method used to set a String value in the SPE header
- setSubsamp(int) - Method in class org.libjpegturbo.turbojpeg.TJCompressor
-
Set the level of chrominance subsampling for subsequent compress/encode
operations.
- setSubsampleX(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
subsampleX field.
- setSubsampleY(int) - Method in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
Sets the value of the
subsampleY field.
- setSuperProperties() - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
- setSwapDimensions(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setTarget(Runnable, Object, boolean) - Method in class jj2000.j2k.util.ThreadPool.ThreadPoolThread
-
Assigns a target to this thread, with an optional notify lock and a
notify mode.
- setTBegin(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setTEnd(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setTerminateOnByte(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Sets
terminateOnByte
- setTermType(int) - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
Set termination type to the specified type
- setThreadConcurrency(int) - Static method in class jj2000.j2k.util.NativeServices
-
Sets the concurrency level of the threading system of the Java Virtual
Machine (JVM) to the specified level.
- setThreadConcurrencyN(int) - Static method in class jj2000.j2k.util.NativeServices
-
Calls the POSIX threads 'pthread_setconcurrency', or equivalent,
function with 'level' as the argument.
- setThreshold(double, double, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setTIFFCompressor(TIFFCompressor) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
Sets the
TIFFCompressor object to be used by the
ImageWriter to encode each image strip or tile.
- setTIFFDecompressor(TIFFDecompressor) - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Sets the
TIFFDecompressor object to be used by the
ImageReader to decode each image strip or tile.
- setTile(int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Changes the current tile, given the new coordinates.
- setTile(int, int) - Method in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in interface jj2000.j2k.image.ImgData
-
Changes the current tile, given the new indices.
- setTile(int, int) - Method in class jj2000.j2k.image.ImgDataAdapter
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.image.ImgDataJoiner
-
Changes the current tile, given the new coordinates.
- setTile(int, int) - Method in class jj2000.j2k.image.input.ImgReader
-
Changes the current tile, given the new coordinates.
- setTile(int, int) - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.image.Tiler
-
Changes the current tile, given the new tile indexes.
- setTile(int, int) - Method in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Changes the current tile, given the new coordinates.
- setTile(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTAdapter
-
Changes the current tile, given the new indices.
- setTile(int, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in interface jj2000.j2k.wavelet.synthesis.MultiResImgData
-
Changes the current tile, given the new indexes.
- setTile(int, int) - Method in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Changes the current tile, given the new indexes.
- setTileCompVal(int, int, Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Sets value for specified tile-component.
- setTileCompVal(int, int, Object) - Method in class jj2000.j2k.ModuleSpec
-
Sets value for specified tile-component.
- setTileDef(int, Object) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Sets default value for specified tile and specValType tag if allowed by
its priority.
- setTileDef(int, Object) - Method in class jj2000.j2k.ModuleSpec
-
Sets default value for specified tile and specValType tag if
allowed by its priority.
- setTileOfTileParts(int) - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Sets the tile of each tile part in order.
- setTileSizeX(int) - Method in class loci.formats.FormatWriter
-
- setTileSizeX(int) - Method in interface loci.formats.IFormatWriter
-
Will attempt to set the tile width to the desired value and return the actual value which will be used
- setTileSizeX(int) - Method in class loci.formats.ImageWriter
-
- setTileSizeX(int) - Method in class loci.formats.out.TiffWriter
-
- setTileSizeX(int) - Method in class loci.formats.WriterWrapper
-
- setTileSizeY(int) - Method in class loci.formats.FormatWriter
-
- setTileSizeY(int) - Method in interface loci.formats.IFormatWriter
-
Will attempt to set the tile height to the desired value and return the actual value which will be used
- setTileSizeY(int) - Method in class loci.formats.ImageWriter
-
- setTileSizeY(int) - Method in class loci.formats.out.TiffWriter
-
- setTileSizeY(int) - Method in class loci.formats.WriterWrapper
-
- setTiling(int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Override the method setTiling in the super class.
- setToBlack(int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- setTopDown(boolean) - Method in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
If set, the data will be written out in a top-down manner, the first
scanline being written first.
- setTruncatedFileFlag(boolean) - Method in class loci.formats.in.DeltavisionReader
-
This flag indicates if the file is known to be truncated.
- setTStep(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setUngroupFiles(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setUnpackedBinaryData(byte[], WritableRaster, Rectangle) - Static method in class com.sun.media.imageioimpl.common.ImageUtil
-
Copies data into the packed array of the
Raster
from an array of unpacked data of the form returned by
getUnpackedBinaryData().
- setup - Variable in class loci.formats.in.SDTInfo
-
- setup(String, ImagePlus) - Method in class loci.plugins.LociExporter
-
Sets up the writer.
- setup(String, ImagePlus) - Method in class loci.plugins.Slicer
-
- SETUP_IDENTIFIER - Static variable in class loci.formats.in.SDTInfo
-
For .set files (setup only).
- setUpgradeCheck(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setupLength - Variable in class loci.formats.in.SDTInfo
-
Length of the setup data.
- setupMetadata(ColorModel, SampleModel, int, int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Sets up the output metadata adding, removing, and overriding fields
as needed.
- setupOffs - Variable in class loci.formats.in.SDTInfo
-
Offset of the setup text data
(system parameters, display parameters, trace parameters etc.).
- setupReader() - Method in class loci.formats.in.MicromanagerReader
-
Initialize the TIFF reader with the first file in the current series.
- setupService() - Method in class loci.formats.FormatReader
-
Initialize the OMEXMLService needed by
FormatReader.setId(String)
- setupService() - Method in class loci.formats.in.OMETiffReader
-
- setupServiceAndMetadata() - Method in class loci.formats.out.OMETiffWriter
-
- setupTiffSaver() - Method in class loci.formats.out.TiffWriter
-
- setupWrite(int, int, int, int, int, int, int, int, double, double, double, int) - Method in interface loci.formats.services.WlzService
-
Sets up the service, which must have already been opened for writing.
- setupWrite(int, int, int, int, int, int, int, int, double, double, double, int) - Method in class loci.formats.services.WlzServiceImpl
-
- setUse64BitOffsets(boolean) - Method in class loci.formats.tiff.TiffParser
-
Sets whether or not 64-bit offsets are used for non-BigTIFF files.
- setUsingPatternIds(boolean) - Method in class loci.formats.FileStitcher
-
Sets whether the reader is using file patterns for IDs.
- setValidate(boolean) - Method in class loci.formats.in.DefaultMetadataOptions
-
- setValidate(boolean) - Method in class loci.formats.in.DynamicMetadataOptions
-
- setValidate(boolean) - Method in interface loci.formats.in.MetadataOptions
-
Specifies whether or not to validate files when reading.
- setValidBitsPerPixel(int) - Method in class loci.formats.FormatWriter
-
- setValidBitsPerPixel(int) - Method in interface loci.formats.IFormatWriter
-
Sets the number of valid bits per pixel.
- setValidBitsPerPixel(int) - Method in class loci.formats.ImageWriter
-
- setValidBitsPerPixel(int) - Method in class loci.formats.WriterWrapper
-
- setValue(int, int, int) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Changes the value of a leaf in the tag tree.
- setValue(String) - Method in class loci.formats.in.BaseZeissReader.Tag
-
- setValue(boolean) - Method in class loci.plugins.prefs.BooleanOption
-
Sets the current value of the option.
- setValue(double) - Method in class loci.plugins.prefs.DoubleOption
-
Sets the current value of the option.
- setValue(String, boolean) - Method in class loci.plugins.prefs.OptionsList
-
Sets the value of the boolean option with the given key.
- setValue(String, String) - Method in class loci.plugins.prefs.OptionsList
-
Sets the value of the string option with the given key.
- setValue(String) - Method in class loci.plugins.prefs.StringOption
-
Sets the current value of the option.
- setValue(double) - Method in class loci.plugins.util.RecordedImageProcessor
-
- setValues(int[]) - Method in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Sets the values of the leafs to the new set of values and
updates the tag tree accordingly.
- setVariant(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
Sets the variant: '1' - '6'.
- setVersionChecking(boolean) - Method in class loci.formats.Memoizer
-
Set whether version checking is done based upon major/minor version
numbers.
- setView(Attributes) - Method in class loci.formats.in.LeicaSCNReader.Image
-
- setVirtual(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setVisible(boolean) - Method in class loci.formats.gui.ImageViewer
-
- setVisible(boolean) - Method in class loci.plugins.util.DataBrowser
-
Overridden show method to allow us to delay initial window display.
- setWidth(int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
- setWindowless(boolean) - Method in class loci.plugins.in.ImporterOptions
-
- setWriteCodeStreamOnly(boolean) - Method in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Sets
writeCodeStreamOnly.
- setWriter(ImageWriter) - Method in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Sets the value of the
writer field.
- setWriteSequentially(boolean) - Method in class loci.formats.FormatWriter
-
- setWriteSequentially(boolean) - Method in interface loci.formats.IFormatWriter
-
Sets whether or not we know that planes will be written sequentially.
- setWriteSequentially(boolean) - Method in class loci.formats.ImageWriter
-
- setWriteSequentially(boolean) - Method in class loci.formats.WriterWrapper
-
- setWritingSequentially(boolean) - Method in class loci.formats.tiff.TiffSaver
-
Sets whether or not we know that the planes will be written sequentially.
- setXML(String) - Method in class loci.formats.gui.XMLWindow
-
Displays XML from the given string.
- setXML(File) - Method in class loci.formats.gui.XMLWindow
-
Displays XML from the given file.
- setXML(String) - Method in class loci.formats.tools.EditTiffG
-
- setXML(String) - Method in class loci.plugins.util.DataBrowser
-
Sets XML block associated with this window.
- setYCbCrCorrection(boolean) - Method in class loci.formats.tiff.TiffParser
-
Sets whether or not YCbCr color correction is allowed.
- setZBegin(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setZEnd(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- setZStep(int, int) - Method in class loci.plugins.in.ImporterOptions
-
- SFEG_TAG - Static variable in class loci.formats.in.FEITiffReader
-
- sgcod_mct - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- sgcod_nl - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- sgcod_po - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- SH - Static variable in class loci.formats.in.DicomReader
-
- SHADING_MUL - Static variable in class loci.formats.in.CellSensReader
-
- SHADING_SUB - Static variable in class loci.formats.in.CellSensReader
-
- Shape() - Constructor for class loci.formats.in.BaseZeissReader.Shape
-
- shape_count - Variable in class loci.formats.in.ZeissTIFFHandler
-
- SHAPE_PREFIX - Static variable in class loci.formats.in.FakeReader
-
- shapes - Variable in class loci.formats.in.BaseZeissReader.Layer
-
- sharpen() - Method in class loci.plugins.util.RecordedImageProcessor
-
- SHARPENING - Static variable in class loci.formats.in.NikonReader
-
- Sharpness() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.Sharpness
-
- SHARPNESS - Static variable in class loci.formats.in.CellSensReader
-
- SHARPNESS - Static variable in class loci.formats.tiff.IFD
-
- SHARPNESS_HARD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Sharpness" tag.
- SHARPNESS_NORMAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Sharpness" tag.
- SHARPNESS_SOFT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "Sharpness" tag.
- SHLIB_NAME - Static variable in class jj2000.j2k.util.NativeServices
-
The name of the shared library containing the implementation of the
native methods: 'jj2000'.
- SHORT - Static variable in class loci.formats.in.CellSensReader
-
- SHORT - Static variable in class loci.formats.in.GatanReader
-
- SHORT_DATE_FORMAT - Static variable in class loci.formats.in.MetamorphReader
-
- shortArrayToBytes(short[]) - Method in class loci.formats.in.FluoviewReader
-
- SHORTCUT_PLUGIN - Static variable in class loci.plugins.shortcut.ShortcutPanel
-
Name of this plugin, ignored when parsing the plugins list.
- ShortcutPanel - Class in loci.plugins.shortcut
-
A plugin that displays a small window containing shortcuts to the
plugins, including the Bio-Formats Importer, Bio-Formats Exporter,
Stack Colorizer and Stack Slicer.
- ShortcutPanel() - Constructor for class loci.plugins.shortcut.ShortcutPanel
-
Constructs a shortcut panel.
- shortcutPanel - Variable in class loci.plugins.shortcut.ShortcutTransferHandler
-
Associated shortcut panel.
- ShortcutTransferHandler - Class in loci.plugins.shortcut
-
Drag and drop transfer handler for Bio-Formats Plugins Shortcut Window.
- ShortcutTransferHandler(ShortcutPanel) - Constructor for class loci.plugins.shortcut.ShortcutTransferHandler
-
Constructs a new shortcut panel drag and drop transfer handler.
- shortLut - Variable in class loci.formats.in.DicomReader
-
- shortValue() - Method in class loci.formats.tiff.TiffRational
-
Returns the value of the specified number as a short.
- showDialog() - Method in class loci.plugins.in.ImporterDialog
-
- showDialog() - Method in class loci.plugins.prefs.OptionsDialog
-
Displays the options dialog, returning the status of the operation.
- showDialogs(ImportProcess) - Method in class loci.plugins.in.Importer
-
- showError(Throwable) - Method in class loci.formats.tools.EditTiffG
-
- showMetadataBox - Variable in class loci.plugins.in.MainDialog
-
- showMetadataWindow() - Method in class loci.plugins.util.DataBrowser
-
Displays the OME-XML metadata window onscreen.
- showOMEXMLBox - Variable in class loci.plugins.in.MainDialog
-
- showOptionsWindow() - Method in class loci.plugins.util.DataBrowser
-
Displays the caching options window onscreen.
- showROIs() - Method in class loci.plugins.in.ImporterOptions
-
- showROIsBox - Variable in class loci.plugins.in.MainDialog
-
- shuffle(int, int[]) - Static method in class loci.formats.in.FakeReader
-
Fisher-Yates shuffle with constant seeds to ensure reproducibility.
- shuffleAllTypesToFront(FileFilter[]) - Static method in class loci.formats.gui.GUITools
-
Looks for an "All supported file types" combo filter
and shuffles it to the front of the list.
- shutdown - Variable in class loci.formats.gui.DataConverter
-
- SHUTTER_SPEED_VALUE - Static variable in class loci.formats.tiff.IFD
-
- ShutterSpeedValue() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.ShutterSpeedValue
-
- SIFReader - Class in loci.formats.in
-
SIFReader is the file format reader for Andor SIF files.
- SIFReader() - Constructor for class loci.formats.in.SIFReader
-
Constructs a new SIF reader.
- SIG_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The mask to isolate the significance bits for row 1 and 2 of the state
array.
- SIG_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The mask to isolate the significance bits for row 1 and 2 of the state
array.
- SIGNAL_OUTPUT - Static variable in class loci.formats.in.CellSensReader
-
- SIGNATURE_SIZE - Static variable in class loci.formats.in.VolocityReader
-
- SignatureBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a Signature Box of JPEG JP2
file format.
- SignatureBox() - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
-
Constructs a
SignatureBox.
- SignatureBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
-
Constructs a
SignatureBox based on the provided
org.w3c.dom.Node.
- SignatureBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.SignatureBox
-
Constructs a
SignatureBox based on the provided
byte array.
- signed - Variable in class loci.formats.codec.CodecOptions
-
Indicates whether or not the pixel data is signed.
- signed - Variable in class loci.formats.in.GatanReader
-
- SignedByteBuffer - Class in loci.formats.gui
-
DataBuffer that stores signed bytes.
- SignedByteBuffer(byte[], int) - Constructor for class loci.formats.gui.SignedByteBuffer
-
Construct a new buffer of signed bytes using the given byte array.
- SignedByteBuffer(byte[][], int) - Constructor for class loci.formats.gui.SignedByteBuffer
-
Construct a new buffer of signed bytes using the given 2D byte array.
- SignedColorModel - Class in loci.formats.gui
-
ColorModel that handles 8, 16 and 32 bits per channel signed data.
- SignedColorModel(int, int, int) - Constructor for class loci.formats.gui.SignedColorModel
-
- SignedShortBuffer - Class in loci.formats.gui
-
DataBuffer that stores signed shorts.
- SignedShortBuffer(int) - Constructor for class loci.formats.gui.SignedShortBuffer
-
- SignedShortBuffer(int, int) - Constructor for class loci.formats.gui.SignedShortBuffer
-
- SignedShortBuffer(short[], int) - Constructor for class loci.formats.gui.SignedShortBuffer
-
- SignedShortBuffer(short[], int, int) - Constructor for class loci.formats.gui.SignedShortBuffer
-
- SignedShortBuffer(short[][], int) - Constructor for class loci.formats.gui.SignedShortBuffer
-
- SignedShortBuffer(short[][], int, int[]) - Constructor for class loci.formats.gui.SignedShortBuffer
-
- sigProgPass(DataBlk, MQDecoder, int, int[], int[], boolean) - Method in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Performs the significance propagation pass on the specified data and
bit-plane.
- sigProgPass(CBlkWTData, MQCoder, boolean, int, int[], int[], int[], int[], int[], int[], int, int, int) - Static method in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Performs the significance propagation pass on the specified data and
bit-plane.
- SimpleCMYKColorSpace - Class in com.sun.media.imageioimpl.common
-
Singleton class representing a simple, mathematically defined CMYK
color space.
- SimpleCMYKColorSpace() - Constructor for class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
-
- SimplePCITiffReader - Class in loci.formats.in
-
SimplePCITiffReader is the file format reader for TIFF files produced by
SimplePCI software.
- SimplePCITiffReader() - Constructor for class loci.formats.in.SimplePCITiffReader
-
- SimpleRenderedImage - Class in com.sun.media.imageioimpl.common
-
- SimpleRenderedImage() - Constructor for class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
- SINGLE_TIFF_PATH_BUILDER - Static variable in class loci.formats.in.CellVoyagerReader
-
- singleInstance(String) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KMetadataFormat
-
- singleTiffMode - Variable in class loci.formats.in.PrairieReader
-
Flag indicating that the reader is operating in a mode where grouping of
files is disallowed.
- SingleTileRenderedImage - Class in com.sun.media.imageioimpl.common
-
A simple class that provides RenderedImage functionality
given a Raster and a ColorModel.
- SingleTileRenderedImage(Raster, ColorModel) - Constructor for class com.sun.media.imageioimpl.common.SingleTileRenderedImage
-
Constructs a SingleTileRenderedImage based on a Raster
and a ColorModel.
- SIS_INI_TAG - Static variable in class loci.formats.in.SISReader
-
- SIS_TAG - Static variable in class loci.formats.in.SISReader
-
- SIS_TAG_2 - Static variable in class loci.formats.in.SISReader
-
- SISReader - Class in loci.formats.in
-
SISReader is the file format reader for Olympus Soft Imaging Solutions
TIFF files.
- SISReader() - Constructor for class loci.formats.in.SISReader
-
- SITE - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- site - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- site - Variable in class loci.formats.in.ZeissTIFFReader.Plane
-
- siz - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the SIZ marker segment found in main header
- SIZ() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- SIZ - Static variable in interface jj2000.j2k.codestream.Markers
-
SIZ marker (Image and tile size): 0xFF51
- SIZ_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for SIZ marker segment found
- size() - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Returns the number of valid bytes in the output buffer (count class
variable).
- size - Variable in class loci.formats.codec.ByteVector
-
- size() - Method in class loci.formats.codec.ByteVector
-
- size - Variable in class loci.formats.in.AVIReader
-
- size - Variable in class loci.formats.in.FV1000Reader
-
- size - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry
-
- size - Variable in class loci.formats.tiff.OnDemandLongArray
-
- size() - Method in class loci.formats.tiff.OnDemandLongArray
-
- size - Variable in class loci.plugins.in.ThumbLoader.SeriesInfo
-
- sizeC - Variable in class loci.formats.CoreMetadata
-
Number of channels.
- sizeC - Variable in class loci.formats.FileStitcher
-
Dimensional axis lengths per file.
- sizeC - Variable in class loci.formats.gui.ImageViewer
-
- sizeC - Variable in class loci.formats.in.FakeReader
-
- sizeC - Variable in class loci.formats.in.LeicaSCNReader.Pixels
-
- sizeCsub - Variable in class loci.formats.tools.MakeTestOmeTiff
-
- sizeOfType - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
- sizeR - Variable in class loci.formats.in.LeicaSCNReader.Pixels
-
- sizeT - Variable in class loci.formats.CoreMetadata
-
Number of timepoints.
- sizeT - Variable in class loci.formats.FileStitcher
-
Dimensional axis lengths per file.
- sizeT - Variable in class loci.formats.gui.ImageViewer
-
- sizeT - Variable in class loci.formats.in.FakeReader
-
- sizeTsub - Variable in class loci.formats.tools.MakeTestOmeTiff
-
- sizeX - Variable in class loci.formats.CoreMetadata
-
Width (in pixels) of images in this series.
- sizeX - Variable in class loci.formats.in.ColumbusReader.Plane
-
- sizeX - Variable in class loci.formats.in.FakeReader
-
- sizeX - Variable in class loci.formats.in.FEITiffReader
-
- sizeX - Variable in class loci.formats.in.LeicaSCNReader.Dimension
-
- sizeX - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection
-
- sizeX - Variable in class loci.formats.in.LeicaSCNReader.Pixels
-
- sizeX - Variable in class loci.formats.in.MetamorphReader
-
- sizeX - Variable in class loci.formats.in.TextReader
-
Image width.
- sizeY - Variable in class loci.formats.CoreMetadata
-
Height (in pixels) of images in this series.
- sizeY - Variable in class loci.formats.in.ColumbusReader.Plane
-
- sizeY - Variable in class loci.formats.in.FakeReader
-
- sizeY - Variable in class loci.formats.in.FEITiffReader
-
- sizeY - Variable in class loci.formats.in.LeicaSCNReader.Dimension
-
- sizeY - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection
-
- sizeY - Variable in class loci.formats.in.LeicaSCNReader.Pixels
-
- sizeY - Variable in class loci.formats.in.MetamorphReader
-
- sizeY - Variable in class loci.formats.in.TextReader
-
Image height.
- sizeZ - Variable in class loci.formats.CoreMetadata
-
Number of Z sections.
- sizeZ - Variable in class loci.formats.FileStitcher
-
Dimensional axis lengths per file.
- sizeZ - Variable in class loci.formats.gui.ImageViewer
-
- sizeZ - Variable in class loci.formats.in.FakeReader
-
- sizeZ - Variable in class loci.formats.in.LeicaSCNReader.Pixels
-
- sizeZ - Variable in class loci.formats.in.NDPIReader
-
- sizeZsub - Variable in class loci.formats.tools.MakeTestOmeTiff
-
- skip(long) - Method in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- skip(long) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
- skip(InputStream, long) - Method in class loci.formats.in.LiFlimReader
-
- skipBits(long) - Method in class loci.formats.codec.BitBuffer
-
Deprecated.
Skips a number of bits in the BitBuffer.
- skipBlocks() - Method in class loci.formats.in.GIFReader
-
- skipBytes(int) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- skipBytes(long) - Method in class com.sun.media.imageio.stream.RawImageInputStream
-
- skipBytes(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
- skipBytes(int) - Method in interface jj2000.j2k.io.BinaryDataInput
-
Skips n bytes from the input.
- skipBytes(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Skips n bytes from the input.
- skipBytes(int) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Skips 'n' bytes from the input.
- skipComment() - Method in class loci.formats.tools.AmiraParameters
-
- skipCommentAndWhiteSpace() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Skips any line in the header starting with '#' and any space, tab, line
feed or carriage return.
- skipData() - Method in class loci.formats.in.ZeissCZIReader.Metadata
-
- skipInteger(ImageInputStream, int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- skipLoad - Variable in class loci.formats.Memoizer
-
- skipMSBP - Variable in class jj2000.j2k.entropy.CodedCBlk
-
The number of skipped most significant bit-planes.
- skipPadding() - Method in class loci.formats.in.GatanReader
-
- skipPixelBlock(boolean) - Method in class loci.formats.in.OIRReader
-
- skipSave - Variable in class loci.formats.Memoizer
-
- skipTagBlock() - Method in class loci.formats.in.ImspectorReader
-
Skip an unknown tag.
- skipTags(int) - Method in class loci.formats.in.ImspectorReader
-
Skip a block of unknown string values.
- skipWhiteSpace() - Method in class loci.formats.in.AmiraReader.ASCII
-
- skipWhiteSpace() - Method in class loci.formats.tools.AmiraParameters
-
- SL - Static variable in class loci.formats.in.DicomReader
-
- SLD_MAGIC_BYTES_1_0 - Static variable in class loci.formats.in.SlidebookReader
-
- SLD_MAGIC_BYTES_1_1 - Static variable in class loci.formats.in.SlidebookReader
-
- SLD_MAGIC_BYTES_1_2 - Static variable in class loci.formats.in.SlidebookReader
-
- SLD_MAGIC_BYTES_2_0 - Static variable in class loci.formats.in.SlidebookReader
-
- SLD_MAGIC_BYTES_2_1 - Static variable in class loci.formats.in.SlidebookReader
-
- SLD_MAGIC_BYTES_3 - Static variable in class loci.formats.in.SlidebookReader
-
- sleep(long) - Method in class loci.plugins.prefs.OptionsDialog
-
Blocks the current thread for the specified number of milliseconds.
- Slice(int) - Constructor for class loci.formats.in.ZeissTIFFReader.Slice
-
- SLICE_SPACING - Static variable in class loci.formats.in.DicomReader
-
- Slicer - Class in loci.plugins
-
A plugin for splitting an image stack into separate
channels, focal planes and/or time points.
- Slicer() - Constructor for class loci.plugins.Slicer
-
- slices - Variable in class loci.formats.in.ZeissTIFFReader
-
- sliceSpace - Variable in class loci.formats.in.PerkinElmerReader
-
- sliceThickness - Variable in class loci.formats.in.MicromanagerReader.Position
-
- sliceThickness - Variable in class loci.formats.in.NiftiReader
-
- SLIDE_INFO - Static variable in class loci.formats.in.CellSensReader
-
- SLIDE_NAME - Static variable in class loci.formats.in.CellSensReader
-
- SLIDE_PREPARATION - Static variable in class loci.formats.in.CellSensReader
-
- SLIDE_PROPERTIES - Static variable in class loci.formats.in.CellSensReader
-
- SLIDE_SPECIMEN - Static variable in class loci.formats.in.CellSensReader
-
- SLIDE_STAINING - Static variable in class loci.formats.in.CellSensReader
-
- SLIDE_TISSUE - Static variable in class loci.formats.in.CellSensReader
-
- SLIDEBOOK_MAGIC_STRING - Static variable in class loci.formats.in.SlidebookTiffReader
-
- SlidebookReader - Class in loci.formats.in
-
SlidebookReader is the file format reader for 3I Slidebook files.
- SlidebookReader() - Constructor for class loci.formats.in.SlidebookReader
-
Constructs a new Slidebook reader.
- SlidebookTiffReader - Class in loci.formats.in
-
- SlidebookTiffReader() - Constructor for class loci.formats.in.SlidebookTiffReader
-
- sliderName - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- sliderPanel - Variable in class loci.formats.gui.ImageViewer
-
- sm - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- smallPalette - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- sMasks - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator
-
The tree of subbandmask.
- SMaxSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMaxSampleValue
-
- SMC_MAGIC - Static variable in class loci.formats.in.SMCameraReader
-
- SMCameraReader - Class in loci.formats.in
-
SMCameraReader is the file format reader for SM camera files.
- SMCameraReader() - Constructor for class loci.formats.in.SMCameraReader
-
Constructs a new SM camera reader.
- SMinSampleValue() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SMinSampleValue
-
- smooth() - Method in class loci.plugins.util.RecordedImageProcessor
-
- snapshot() - Method in class loci.plugins.util.RecordedImageProcessor
-
- SOC - Static variable in interface jj2000.j2k.codestream.Markers
-
Start of codestream (SOC): 0xFF4F
- SOD - Static variable in interface jj2000.j2k.codestream.Markers
-
Start of data (SOD): 0xFF93
- SOD_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for SOD marker segment found
- SOF0 - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- SOF0 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF0 - Static variable in class loci.formats.services.JPEGTurboServiceImpl
-
- SOF1 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF10 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF11 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF13 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF14 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF15 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF2 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF3 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF5 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF6 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF7 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOF9 - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOFPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- Software() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Software
-
- SOFTWARE - Static variable in class loci.formats.tiff.IFD
-
- SOI - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
-
- SOI - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOP - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Specifies whether start of packet (SOP) markers should be used.
- SOP - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
Specifies whether start of packet (SOP) markers should be used.
- SOP - Static variable in interface jj2000.j2k.codestream.Markers
-
Start pf packet (SOP): 0xFF91
- SOP_LENGTH - Static variable in interface jj2000.j2k.codestream.Markers
-
Length of SOP marker (in bytes)
- SOP_MARKER_LIMIT - Static variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
The upper limit for the value of the Nsop field of the SOP marker
- sopMarker - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Array used to store the SOP markers values
- sopMarkSeg - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Buffers containing the SOP marker segments
- sops - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
The Start Of Packet (SOP) markers specifications
- sopUsed - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Whether or not SOP marker segment are used
- sortFilters(FileFilter[]) - Static method in class loci.formats.gui.ComboFileFilter
-
Sorts the given list of file filters, and combines filters with identical
descriptions into a combination filter that accepts anything any of its
constituant filters do.
- sortFilters(Vector) - Static method in class loci.formats.gui.ComboFileFilter
-
Sorts the given list of file filters, and combines filters with identical
descriptions into a combination filter that accepts anything any of its
constituant filters do.
- sortFilters(FileFilter[]) - Static method in class loci.formats.gui.GUITools
-
Sorts the given list of file filters, keeping the "All supported
file types" combo filter (if any) at the front of the list.
- sortFilters(Vector) - Static method in class loci.formats.gui.GUITools
-
Sorts the given list of file filters, keeping the "All supported
file types" combo filter (if any) at the front of the list.
- sortFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- sortFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- SOS - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- SOS - Static variable in class loci.formats.codec.LosslessJPEGCodec
-
- SOS - Static variable in class loci.formats.services.JPEGTurboServiceImpl
-
- sos - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- SOSMarker - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- sot - Variable in class jj2000.j2k.codestream.HeaderInfo
-
Reference to the SOT marker segments found in tile-part headers.
- SOT() - Constructor for class jj2000.j2k.codestream.HeaderInfo.SOT
-
- SOT - Static variable in interface jj2000.j2k.codestream.Markers
-
Start of tile-part (SOT): 0xFF90
- SOT_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for SOT marker segment found
- source - Variable in class com.sun.media.imageio.stream.RawImageInputStream
-
The wrapperred
ImageInputStream.
- source - Variable in class loci.formats.cache.Cache
-
Current cache source.
- source - Variable in class loci.formats.cache.CacheEvent
-
Source of the cache update.
- SOURCE_CHANGED - Static variable in class loci.formats.cache.CacheEvent
-
Event type indicating a new cache source.
- SOURCE_LENS - Static variable in class loci.formats.in.NDPIReader
-
- SOURCE_PARAMS - Static variable in class loci.formats.gui.CacheComponent
-
- SOURCE_VALUES - Static variable in class loci.formats.gui.CacheComponent
-
- sourceBands - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The sequence of source bands that are to be copied into the
destination.
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
source and destination bands.
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The source bands to be encoded.
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
source and destination bands.
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The source bands to be encoded.
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- sourceBands - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- sourceBandsCache - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- sourceChooser - Variable in class loci.formats.gui.CacheComponent
-
Combo box for choosing cache source.
- sourceHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- sourceIndex(ICacheSource) - Method in class loci.formats.gui.CacheComponent
-
Converts cache source to source chooser index.
- sourceOrigin - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- sourceOrigin - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
- sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
The source region.
- sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
The source region.
- sourceRegion - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- sources - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The image's sources, stored in a Vector.
- SOURCES - Static variable in class loci.formats.gui.CacheComponent
-
- sourceValue(int) - Method in class loci.formats.gui.CacheComponent
-
Generates a new cache source matching the source chooser index.
- sourceWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- sourceXOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The source X offset used, along with
dstXOffset
and subsampleX, to map between horizontal source
and destination pixel coordinates.
- sourceXOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- sourceXOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- sourceYOffset - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The source Y offset used, along with
dstYOffset
and subsampleY, to map between vertical source and
destination pixel coordinates.
- sourceYOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- sourceYOffset - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- SPACE - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- SPATIAL_FREQUENCY_RESPONSE - Static variable in class loci.formats.tiff.IFD
-
- SpatialFrequencyResponse() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SpatialFrequencyResponse
-
- spatialUnit - Variable in class loci.formats.in.NiftiReader
-
- spcId - Variable in class loci.formats.in.SPCReader
-
- spcoc_ch - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- spcoc_cs - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- spcoc_cw - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- spcoc_ndl - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- spcoc_ps - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- spcoc_t - Variable in class jj2000.j2k.codestream.HeaderInfo.COC
-
- spcod_ch - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- spcod_cs - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- spcod_cw - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- spcod_ndl - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- spcod_ps - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- spcod_t - Variable in class jj2000.j2k.codestream.HeaderInfo.COD
-
- SPCReader - Class in loci.formats.in
-
SPCReader is the file format reader for
Becker & Hickl SPC-Image SPC FIFO files.
- SPCReader() - Constructor for class loci.formats.in.SPCReader
-
Constructs a new SPC reader.
- SPEC_COMP_DEF - Static variable in class jj2000.j2k.ModuleSpec
-
The identifier for "component default" specification
- SPEC_DEF - Static variable in class jj2000.j2k.ModuleSpec
-
The identifier for default specification
- SPEC_TILE_COMP - Static variable in class jj2000.j2k.ModuleSpec
-
The identifier for a "tile-component" specification
- SPEC_TILE_DEF - Static variable in class jj2000.j2k.ModuleSpec
-
The identifier for "tile default" specification
- SPEC_TYPE_COMP - Static variable in class jj2000.j2k.ModuleSpec
-
The identifier for a specification module that applies only to
components
- SPEC_TYPE_TILE - Static variable in class jj2000.j2k.ModuleSpec
-
The identifier for a specification module that applies only to
tiles
- SPEC_TYPE_TILE_COMP - Static variable in class jj2000.j2k.ModuleSpec
-
The identifier for a specification module that applies both to
tiles and components
- specialPlateNames - Variable in class loci.formats.in.OpenlabReader
-
- specified - Variable in class jj2000.j2k.ModuleSpec
-
The specified value in string format
- specified - Variable in class jj2000.j2k.StringSpec
-
- specifyRangesBox - Variable in class loci.plugins.in.MainDialog
-
- specTitle - Static variable in class com.sun.media.imageioimpl.common.PackageUtil
-
Specification Title derived from Manifest.
- SPECTRA - Static variable in class loci.formats.FormatTools
-
Identifies the Spectra dimensional type,
representing a dimension consisting of spectral channels.
- spectra - Variable in class loci.formats.in.IM3Reader
-
- SPECTRAL_SENSITIVITY - Static variable in class loci.formats.tiff.IFD
-
- spectralMode - Variable in class loci.formats.in.PrairieMetadata.Sequence
-
SpectralMode of this <Sequence>.
- SpectralSensitivity() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SpectralSensitivity
-
- Spectrum(IRandomAccess, IM3Reader.ContainerRecord) - Constructor for class loci.formats.in.IM3Reader.Spectrum
-
Construct a spectrum by parsing a Spectrum record
- specType - Variable in class jj2000.j2k.ModuleSpec
-
The type of the specification module
- specValType - Variable in class jj2000.j2k.ModuleSpec
-
The spec type for each tile-component.
- specValType - Variable in class jj2000.j2k.wavelet.WTDecompSpec
-
The spec type for each tile and component.
- specValType - Variable in class jj2000.j2k.wavelet.WTFilterSpec
-
The spec type for each tile and component.
- speed - Variable in class loci.formats.in.ND2Handler
-
- SPEED_REF_KILOMETERS_PER_HOUR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSSpeedRef" tag.
- SPEED_REF_KNOTS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSSpeedRef" tag.
- SPEED_REF_MILES_PER_HOUR - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSSpeedRef" tag.
- SpeHeader(byte[]) - Constructor for class loci.formats.in.SPEReader.SpeHeader
-
Constructor for SpeHeader
- SpeHeaderEntry(int, SPEReader.SpeHeaderType) - Constructor for enum loci.formats.in.SPEReader.SpeHeaderEntry
-
Constructor for SpeHeaderEntry
- SpeHeaderType() - Constructor for enum loci.formats.in.SPEReader.SpeHeaderType
-
- SPEReader - Class in loci.formats.in
-
SPEReader is the file format reader for Princeton Instruments SPE .spe files.
- SPEReader() - Constructor for class loci.formats.in.SPEReader
-
Constructs a new SPE reader.
- SPEReader.SpeHeader - Class in loci.formats.in
-
SpeHeader holds a byte array containing the SPE binary data header along
with associated methods for reading SPE Header Entry values in various formats
- SPEReader.SpeHeaderEntry - Enum in loci.formats.in
-
SpeHeaderEntry is an Enum which provides a list of all available SPE header entries along
with the offset value from the top of the header in bytes and their associated data type
- SPEReader.SpeHeaderType - Enum in loci.formats.in
-
SpeHeaderType is an Enum representing the available data types stored in the SPE header
- SPEReader.SpeROI - Class in loci.formats.in
-
Private class to represent the data for a single ROI in the SPE format
- SpeROI(int, int, int, int, int, int) - Constructor for class loci.formats.in.SPEReader.SpeROI
-
Constructor for SpeROI objects
- SpiderReader - Class in loci.formats.in
-
SpiderReader is the file format reader for SPIDER files.
- SpiderReader() - Constructor for class loci.formats.in.SpiderReader
-
Constructs a new SPIDER reader.
- SPIN_DISK_CONFOCAL - Static variable in class loci.formats.in.LegacyND2Reader
-
- spixels - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- split(WaveletFilter, WaveletFilter) - Method in class jj2000.j2k.wavelet.analysis.SubbandAn
-
Splits the current subband in its four subbands.
- split(WaveletFilter, WaveletFilter) - Method in class jj2000.j2k.wavelet.Subband
-
Splits the current subband in its four subbands.
- split(WaveletFilter, WaveletFilter) - Method in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Splits the current subband in its four subbands.
- split - Variable in class loci.formats.codec.NikonCodecOptions
-
- split - Variable in class loci.formats.in.NativeND2Reader
-
- split - Variable in class loci.formats.in.NikonReader
-
- SPLIT_LOSSY_DECODER_CONFIGURATION_12 - Static variable in class loci.formats.codec.NikonCodec
-
- SPLIT_LOSSY_DECODER_CONFIGURATION_14 - Static variable in class loci.formats.codec.NikonCodec
-
- splitCBox - Variable in class loci.plugins.in.MainDialog
-
- splitChannels(BufferedImage) - Static method in class loci.formats.gui.AWTImageTools
-
Splits the given multi-channel image into single-channel images.
- splitChannels(byte[], int, int, int, boolean, boolean) - Static method in class loci.formats.ImageTools
-
Splits the given multi-channel array into a 2D array.
- splitChannels(byte[], byte[], int, int, int, boolean, boolean, int) - Static method in class loci.formats.ImageTools
-
Splits the given multi-channel array into a 2D array.
- splitDims(List<ImagePlus>) - Method in class loci.plugins.in.ImagePlusReader
-
- splitDoubles(String) - Method in class loci.formats.in.ICSReader
-
Splits the given string into a list of
Doubles.
- splitPlanes - Variable in class loci.formats.in.ZeissLSMReader
-
- splitTBox - Variable in class loci.plugins.in.MainDialog
-
- splitZBox - Variable in class loci.plugins.in.MainDialog
-
- SPM_DOMAIN - Static variable in class loci.formats.FormatTools
-
Identifies the scanning probe microscopy domain.
- spqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
-
- spqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD
-
- sprgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
-
- SpringUtilities - Class in loci.plugins.config
-
A 1.4 file that provides utility methods for
creating form- or grid-style layouts with SpringLayout.
- SpringUtilities() - Constructor for class loci.plugins.config.SpringUtilities
-
- SPURIOUS_NOISE_REMOVAL - Static variable in class loci.formats.in.CellSensReader
-
- SQ - Static variable in class loci.formats.in.DicomReader
-
- sqcc - Variable in class jj2000.j2k.codestream.HeaderInfo.QCC
-
- sqcd - Variable in class jj2000.j2k.codestream.HeaderInfo.QCD
-
- SQCX_EXP_MASK - Static variable in interface jj2000.j2k.codestream.Markers
-
Exponent bitmask in SPQCX when no quantization: 3
- SQCX_EXP_SHIFT - Static variable in interface jj2000.j2k.codestream.Markers
-
Exponent shift in SPQCX when no quantization: 3
- SQCX_GB_MSK - Static variable in interface jj2000.j2k.codestream.Markers
-
Guard bits mask in SQCX field: 7
- SQCX_GB_SHIFT - Static variable in interface jj2000.j2k.codestream.Markers
-
Guard bits shift in SQCX field: 5
- SQCX_NO_QUANTIZATION - Static variable in interface jj2000.j2k.codestream.Markers
-
No quantization (i.e.
- SQCX_SCALAR_DERIVED - Static variable in interface jj2000.j2k.codestream.Markers
-
Scalar derived (i.e.
- SQCX_SCALAR_EXPOUNDED - Static variable in interface jj2000.j2k.codestream.Markers
-
Scalar expounded (i.e.
- sqr() - Method in class loci.plugins.util.RecordedImageProcessor
-
- sqrt() - Method in class loci.plugins.util.RecordedImageProcessor
-
- SQUARE_ROOT - Static variable in class loci.formats.in.GelReader
-
- squareRoot - Variable in class loci.formats.in.IvisionReader
-
- sQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The subband in which the ncb quit condition was reached
- src - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- src - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ImageInputStreamWrapper
-
The
ImageInputStream to be wrapped.
- src - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- src - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Reference to the codestream reader agent
- src - Variable in class jj2000.j2k.entropy.decoder.EntropyDecoder
-
The bit stream transport from where to get the compressed data
(the source)
- src - Variable in class jj2000.j2k.entropy.encoder.EntropyCoder
-
The source of quantized wavelet coefficients
- src - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
The source of entropy coded data
- src - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
The source of image data
- src - Variable in class jj2000.j2k.image.ImgDataConverter
-
The source of image data
- src - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
The source of image data
- src - Variable in class jj2000.j2k.image.Tiler
-
The source of image data
- src - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
The entropy decoder from where to get the quantized data (the
source).
- src - Variable in class jj2000.j2k.quantization.quantizer.Quantizer
-
The source of wavelet transform coefficients
- src - Variable in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
The source of quantized wavelet transform coefficients
- src - Variable in class jj2000.j2k.roi.encoder.ROIScaler
-
The source of quantized wavelet transform coefficients
- src - Variable in class jj2000.j2k.roi.ROIDeScaler
-
The entropy decoder from where to get the compressed data (the source)
- src - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The source of image data
- src - Variable in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
the code-block buffer's source i.e.
- srcblk - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The source code-block to entropy code (avoids reallocation for each
code-block).
- srcBlk - Variable in class jj2000.j2k.image.ImgDataConverter
-
The block used to request data from the source in the case that a
conversion seems necessary.
- srcblkT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The source code-block to entropy code (avoids reallocation for each
code-block), for each thread.
- srcBuf - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- srcColorModel - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- srcData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- srcData - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- srcHeight - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The height of the source region being decoded from the source
stream.
- srcHeight - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- srcIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- srcIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- srcMinX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The X coordinate of the upper-left pixel of the source region
being decoded from the source stream.
- srcMinY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The Y coordinate of the upper-left pixel of the source region
being decoded from the source stream.
- srcPitch - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- srcPixelFormat - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- srcRaster - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- srcWidth - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The width of the source region being decoded from the source
stream.
- srcWidth - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- srcXSubsampling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- srcYSubsampling - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- srgn - Variable in class jj2000.j2k.codestream.HeaderInfo.RGN
-
- SRGN_IMPLICIT - Static variable in interface jj2000.j2k.codestream.Markers
-
Implicit (i.e.
- SS - Static variable in class loci.formats.in.DicomReader
-
- ssiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- SSIZ_DEPTH_BITS - Static variable in interface jj2000.j2k.codestream.Markers
-
Component bitdepth bits in Ssiz field in SIZ marker: 7
- sss - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Error resilience segment symbol use specifications
- ST - Static variable in class loci.formats.in.DicomReader
-
- STABLE - Static variable in class loci.plugins.Updater
-
- STABLE_BUILD - Static variable in class loci.formats.UpgradeChecker
-
Location of the JAR artifacts for the stable releases.
- STABLE_VERSION - Static variable in class loci.formats.UpgradeChecker
-
Version number of the latest stable release.
- Stack() - Constructor for class loci.formats.in.OBFReader.Stack
-
- Stack() - Constructor for class loci.formats.in.VolocityReader.Stack
-
- STACK_DISPLAY_LUT - Static variable in class loci.formats.in.CellSensReader
-
- STACK_MAGIC_STRING - Static variable in class loci.formats.in.OBFReader
-
- STACK_NAME - Static variable in class loci.formats.in.CellSensReader
-
- STACK_TYPE - Static variable in class loci.formats.in.CellSensReader
-
- stackFormatChoice - Variable in class loci.plugins.in.MainDialog
-
- stackOrderChoice - Variable in class loci.plugins.in.MainDialog
-
- stacks - Variable in class loci.formats.in.OBFReader
-
- stacks - Variable in class loci.formats.in.VolocityReader
-
- stageLabel - Variable in class loci.formats.in.MetamorphHandler
-
- stageNames - Variable in class loci.formats.in.MetamorphReader
-
- stageX - Variable in class loci.formats.in.BaseZeissReader
-
- stageX - Variable in class loci.formats.in.FEITiffReader
-
- stageX - Variable in class loci.formats.in.MetamorphReader
-
- stageX - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- stageXCoord - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
X stage coordinates.
- stageY - Variable in class loci.formats.in.BaseZeissReader
-
- stageY - Variable in class loci.formats.in.FEITiffReader
-
- stageY - Variable in class loci.formats.in.MetamorphReader
-
- stageY - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- stageYCoord - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
Y stage coordinates.
- stageZ - Variable in class loci.formats.in.FEITiffReader
-
- stageZ - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- stageZCoord - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
Z stage coordinates.
- stamps - Variable in class loci.formats.in.FluoviewReader
-
Timestamps for each plane, in seconds.
- stampValues - Variable in class loci.formats.in.LiFlimReader
-
- STANDARD_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- start - Variable in class loci.formats.in.EPSReader
-
Starting line of pixel data.
- start - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry
-
- start - Variable in class loci.formats.Modulo
-
- start - Variable in class loci.formats.tiff.OnDemandLongArray
-
- START_OFFSET - Static variable in class loci.formats.in.BioRadGelReader
-
- START_TIME - Static variable in class loci.formats.in.ZeissLSMReader
-
- startCoordinate - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.AFIReader.AFIHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.BioRadReader.BioRadHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.BioRadSCNReader.SCNHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.ColumbusReader.MeasurementHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.FEITiffReader.FEIHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.FlexReader.FlexHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.FlexReader.MeaHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.FlexReader.ResHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.ImaconReader.ImaconHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.InCellReader.InCellHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.InCellReader.MinimalInCellHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.IvisionReader.IvisionHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.LeicaHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.MetamorphHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.MicromanagerReader.MicromanagerHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.ND2Handler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.OMEXMLReader.OMEXMLHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.OperettaReader.OperettaHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.ScanrReader.ScanrHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.in.ZeissTIFFHandler
-
- startElement(String, String, String, Attributes) - Method in class loci.formats.out.OMEXMLWriter.OMEHandler
-
- startIndex - Variable in class loci.formats.FilePattern
-
Indices into the pattern indicating the start of a numerical block.
- startingPosition - Variable in class loci.formats.in.ZeissCZIReader.Segment
-
- startLevelROI - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
This parameter defines the lowest resolution levels to belong to
the ROI.
- startPos - Variable in class com.sun.media.imageio.stream.StreamSegment
-
- startTime - Variable in class loci.formats.in.PerkinElmerReader
-
- startTime - Variable in class loci.formats.in.ZeissLSMReader.Recording
-
- startTime - Variable in class loci.plugins.in.ImagePlusReader
-
- startTiming() - Method in class loci.plugins.in.ImagePlusReader
-
- startX - Variable in class loci.formats.in.SPEReader.SpeROI
-
- startY - Variable in class loci.formats.in.SPEReader.SpeROI
-
- state - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The state array for entropy coding.
- state - Variable in class loci.formats.services.WlzServiceImpl
-
- STATE_D_DL_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal down-left significance in the state
array, for row 1.
- STATE_D_DL_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal down-left significance in the state
array, for row 1.
- STATE_D_DL_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal down-left significance in the state
array, for row 2.
- STATE_D_DL_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal down-left significance in the state
array, for row 2.
- STATE_D_DR_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal down-right significance in the state
array , for row 1.
- STATE_D_DR_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal down-right significance in the state
array , for row 1.
- STATE_D_DR_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal down-right significance in the state
array , for row 2.
- STATE_D_DR_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal down-right significance in the state
array , for row 2.
- STATE_D_UL_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal up-left significance in the state array,
for row 1.
- STATE_D_UL_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal up-left significance in the state array,
for row 1.
- STATE_D_UL_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal up-left significance in the state array,
for row 2.
- STATE_D_UL_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal up-left significance in the state array,
for row 2.
- STATE_D_UR_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal up-right significance in the state
array, for row 1.
- STATE_D_UR_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal up-right significance in the state
array, for row 1.
- STATE_D_UR_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the diagonal up-right significance in the state
array, for row 2.
- STATE_D_UR_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the diagonal up-right significance in the state
array, for row 2.
- STATE_H_L_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-left significance in the state array,
for row 1.
- STATE_H_L_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-left significance in the state array,
for row 1.
- STATE_H_L_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-left significance in the state array,
for row 2.
- STATE_H_L_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-left significance in the state array,
for row 2.
- STATE_H_L_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-left sign in the state array, for row
1.
- STATE_H_L_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-left sign in the state array, for row
1.
- STATE_H_L_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-left sign in the state array, for row
2.
- STATE_H_L_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-left sign in the state array, for row
2.
- STATE_H_R_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-right significance in the state array,
for row 1.
- STATE_H_R_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-right significance in the state array,
for row 1.
- STATE_H_R_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-right significance in the state array,
for row 2.
- STATE_H_R_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-right significance in the state array,
for row 2.
- STATE_H_R_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-right sign in the state array, for
row 1.
- STATE_H_R_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-right sign in the state array, for
row 1.
- STATE_H_R_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the horizontal-right sign in the state array, for
row 2.
- STATE_H_R_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the horizontal-right sign in the state array, for
row 2.
- STATE_NZ_CTXT_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the "not zero context" bit in the state array, for
row 1.
- STATE_NZ_CTXT_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the "not zero context" bit in the state array, for
row 1.
- STATE_NZ_CTXT_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the "not zero context" bit in the state array, for
row 2.
- STATE_NZ_CTXT_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the "not zero context" bit in the state array, for
row 2.
- STATE_PREV_MR_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the previous MR primitive applied in the state array,
for row 1.
- STATE_PREV_MR_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the previous MR primitive applied in the state array,
for row 1.
- STATE_PREV_MR_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the previous MR primitive applied in the state array,
for row 2.
- STATE_PREV_MR_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the previous MR primitive applied in the state array,
for row 2.
- STATE_SEP - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The separation between the upper and lower bits in the state array: 16
- STATE_SEP - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
- STATE_SIG_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the significance in the state array, for row 1.
- STATE_SIG_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the significance in the state array, for row 1.
- STATE_SIG_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the significance in the state array, for row 2.
- STATE_SIG_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the significance in the state array, for row 2.
- STATE_V_D_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-down significance in the state array,
for row 1.
- STATE_V_D_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-down significance in the state array,
for row 1.
- STATE_V_D_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-down significance in the state array,
for row 2.
- STATE_V_D_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-down significance in the state array,
for row 2.
- STATE_V_D_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-down sign in the state array, for row
1.
- STATE_V_D_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-down sign in the state array, for row
1.
- STATE_V_D_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-down sign in the state array, for row
2.
- STATE_V_D_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-down sign in the state array, for row
2.
- STATE_V_U_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-up significance in the state array, for
row 1.
- STATE_V_U_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-up significance in the state array, for
row 1.
- STATE_V_U_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-up significance in the state array, for
row 2.
- STATE_V_U_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-up significance in the state array, for
row 2.
- STATE_V_U_SIGN_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-up sign in the state array, for row
1.
- STATE_V_U_SIGN_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-up sign in the state array, for row
1.
- STATE_V_U_SIGN_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the vertical-up sign in the state array, for row
2.
- STATE_V_U_SIGN_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the vertical-up sign in the state array, for row
2.
- STATE_VISITED_R1 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the "visited" bit in the state array, for row 1.
- STATE_VISITED_R1 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the "visited" bit in the state array, for row 1.
- STATE_VISITED_R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The flag bit for the "visited" bit in the state array, for row 2.
- STATE_VISITED_R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The flag bit for the "visited" bit in the state array, for row 2.
- stateChanged(ChangeEvent) - Method in class loci.formats.gui.CacheComponent
-
Handles range spinner changes.
- stateChanged(ChangeEvent) - Method in class loci.formats.gui.DataConverter
-
- stateChanged(ChangeEvent) - Method in class loci.formats.gui.ImageViewer
-
Handles slider events.
- stateChanged(ChangeEvent) - Method in class loci.plugins.util.SearchableWindow.SearchBox
-
- stateT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The state array for each thread.
- status - Variable in class loci.formats.in.BioRadReader.Note
-
- status - Variable in class loci.formats.in.SDTInfo
-
Last SPC_test_state return value (status).
- status(boolean, String) - Static method in class loci.plugins.BF
-
- status - Variable in class loci.plugins.config.ConfigWindow
-
- status - Variable in class loci.plugins.config.LibraryEntry
-
- STATUS_CANCELED - Static variable in class loci.plugins.prefs.OptionsDialog
-
- STATUS_FINISHED - Static variable in class loci.plugins.prefs.OptionsDialog
-
- STATUS_MEASUREMENT_IN_PROGRESS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSStatus" tag.
- STATUS_MEASUREMENT_INTEROPERABILITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A value to be used with the "GPSStatus" tag.
- STATUS_OK - Static variable in class loci.plugins.prefs.OptionsDialog
-
- statusUpdated(StatusEvent) - Method in class loci.plugins.in.DisplayHandler
-
Reports status updates via ImageJ's status bar mechanism.
- statusUpdated(StatusEvent) - Method in class loci.plugins.in.ImporterPrompter
-
- StdDequantizer - Class in jj2000.j2k.quantization.dequantizer
-
This class implements a scalar dequantizer with deadzone.
- StdDequantizer(CBlkQuantDataSrcDec, int[], DecoderSpecs) - Constructor for class jj2000.j2k.quantization.dequantizer.StdDequantizer
-
Initializes the source of compressed data.
- StdDequantizerParams - Class in jj2000.j2k.quantization.dequantizer
-
This class holds the parameters for the scalar deadzone dequantizer
(StdDequantizer class) for the current tile.
- StdDequantizerParams() - Constructor for class jj2000.j2k.quantization.dequantizer.StdDequantizerParams
-
- StdEntropyCoder - Class in jj2000.j2k.entropy.encoder
-
This class implements the JPEG 2000 entropy coder, which codes stripes in
code-blocks.
- StdEntropyCoder(CBlkQuantDataSrcEnc, CBlkSizeSpec, PrecinctSizeSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec, StringSpec) - Constructor for class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Instantiates a new entropy coder engine, with the specified source of
data, nominal block width and height.
- StdEntropyCoder.Compressor - Class in jj2000.j2k.entropy.encoder
-
Class that takes care of running the 'compressCodeBlock()' method with
thread local arguments.
- StdEntropyCoderOptions - Interface in jj2000.j2k.entropy
-
This interface define the constants that identify the possible options for
the entropy coder, as well some fixed parameters of the JPEG 2000 entropy
coder.
- StdEntropyDecoder - Class in jj2000.j2k.entropy.decoder
-
This class implements the JPEG 2000 entropy decoder, which codes stripes in
code-blocks.
- StdEntropyDecoder(CodedCBlkDataSrcDec, DecoderSpecs, boolean, boolean, int) - Constructor for class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Instantiates a new entropy decoder engine, with the specified source of
data, nominal block width and height.
- StdQuantizer - Class in jj2000.j2k.quantization.quantizer
-
This class implements scalar quantization of integer or floating-point
valued source data.
- StdQuantizer(CBlkWTDataSrc, J2KImageWriteParamJava) - Constructor for class jj2000.j2k.quantization.quantizer.StdQuantizer
-
Initializes the source of wavelet transform coefficients.
- step - Variable in class loci.formats.FilePatternBlock
-
- step - Variable in class loci.formats.Modulo
-
- step - Variable in class loci.plugins.in.ImportProcess
-
Current step in the import preparation process.
- step(ImportStep) - Method in class loci.plugins.in.ImportProcess
-
- step - Variable in enum loci.plugins.in.ImportStep
-
- STEP_TABLE - Static variable in enum loci.plugins.in.ImportStep
-
- steps - Variable in class loci.formats.in.SDTInfo
-
- stepSize - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The quantization step size of the code-block.
- stepSize - Variable in class loci.formats.in.MetamorphReader
-
- stepWMSE - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
-
The contribution to the MSE or WMSE error that would result in the
image if there was an error of exactly one quantization step size in
the sample of the subband.
- stepX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
The subsampling step sizes.
- stepY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
The subsampling step sizes.
- stitchTilesBox - Variable in class loci.plugins.in.MainDialog
-
- STK_SUFFIX - Static variable in class loci.formats.in.MetamorphReader
-
- stkReaders - Variable in class loci.formats.in.MetamorphReader
-
- stks - Variable in class loci.formats.in.MetamorphReader
-
List of STK files in the dataset.
- stop - Variable in class loci.plugins.in.ThumbLoader
-
- stop() - Method in class loci.plugins.in.ThumbLoader
-
Instructs the thumbnail loader to stop loading thumbnails.
- stopt - Variable in class loci.formats.in.SDTInfo
-
- stopTime - Variable in class loci.formats.in.SDTInfo
-
Time from start to - disarm (simple measurement)
- or to the end of the cycle (for complex measurement).
- stopWatch() - Method in class loci.formats.Memoizer
-
- storageMethod - Variable in class loci.formats.in.MRWReader
-
- store - Variable in class loci.formats.FileStitcher
-
- store - Variable in class loci.formats.in.CellH5Reader
-
- store - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- store - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- store - Variable in class loci.formats.in.LeicaHandler
-
- store - Variable in class loci.formats.in.ZeissCZIReader
-
- storedChannel - Variable in class loci.formats.in.SDTReader
-
- storedChannel - Variable in class loci.formats.in.SPCReader
-
- storedRGB - Variable in class loci.formats.in.ICSReader
-
- storedSeries - Variable in class loci.formats.in.SDTReader
-
- storedSize - Variable in class loci.formats.in.ZeissCZIReader.DimensionEntry
-
- storedT - Variable in class loci.formats.in.SPCReader
-
- storeHighestDims(Integer[]) - Method in class jj2000.j2k.entropy.CBlkSizeSpec
-
Stores the highest code-block width and height
- storeKeyValue(Hashtable, String, String) - Method in class loci.formats.in.LeicaHandler
-
- storeLine(Line, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler
-
Stores the Line ROI into the specified metadata store.
- storeOval(OvalRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler
-
Stores the Oval ROI into the specified metadata store.
- storePoint(PointRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler
-
Stores the Point ROI into the specified metadata store.
- storePolygon(PolygonRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler
-
Stores the Polygon ROI into the specified metadata store.
- storeRectangle(Roi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler
-
Stores the Rectangle ROI into the specified metadata store.
- storeROI(MetadataStore, int, int) - Method in class loci.formats.in.LeicaHandler.ROI
-
- storeROI(MetadataStore, int, int, int) - Method in class loci.formats.in.LIFReader.ROI
-
- storeROIs(MetadataStore) - Method in class loci.formats.in.BaseZeissReader
-
Store basic dimensions in model
- storeSeriesHashtable(int, Hashtable) - Method in class loci.formats.in.LeicaHandler
-
- storeText(TextRoi, MetadataStore, int, int, int, int, int) - Static method in class loci.plugins.util.ROIHandler
-
Stores the text ROI into the metadata stored.
- STRATEGIES - Static variable in class loci.formats.gui.CacheComponent
-
- strategy - Variable in class loci.formats.cache.Cache
-
Current cache strategy.
- STRATEGY_CHANGED - Static variable in class loci.formats.cache.CacheEvent
-
Event type indicating a new cache strategy.
- STRATEGY_PARAMS - Static variable in class loci.formats.gui.CacheComponent
-
- STRATEGY_VALUES - Static variable in class loci.formats.gui.CacheComponent
-
- strategyChooser - Variable in class loci.formats.gui.CacheComponent
-
Combo box for choosing cache strategy.
- strategyIndex(ICacheStrategy) - Method in class loci.formats.gui.CacheComponent
-
Converts cache strategy to strategy chooser index.
- strategyValue(int) - Method in class loci.formats.gui.CacheComponent
-
Generates a new cache strategy matching the strategy chooser index.
- strChr_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable
-
- stream - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
The
ImageOutputStream to be written.
- stream - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The
ImageInputStream containing the TIFF source
data.
- stream - Variable in class com.sun.media.imageio.stream.SegmentedImageInputStream
-
- stream - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
The output stream to write into
- stream - Variable in class com.sun.media.imageioimpl.plugins.clib.InputStreamAdapter
-
- stream - Variable in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
-
- stream - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
The
output case to an ImageOutputStream.
- stream - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
The output stream to write into
- stream - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
The output stream to write into
- stream - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The output stream to write into
- stream - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- stream - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- stream - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
The output stream to write into
- stream - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
- stream - Variable in class loci.formats.in.ZeissCZIReader.Segment
-
- stream - Variable in class loci.formats.services.POIServiceImpl
-
- stream - Variable in class loci.formats.tiff.OnDemandLongArray
-
- STREAM_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- STREAM_METADATA_NAME - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
- streamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- streamMetadata - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- StreamMsgLogger - Class in jj2000.j2k.util
-
This class implements the MsgLogger interface for streams.
- StreamMsgLogger(OutputStream, OutputStream, int) - Constructor for class jj2000.j2k.util.StreamMsgLogger
-
Constructs a StreamMsgLogger that uses 'outstr' as the 'out' stream,
and 'errstr' as the 'err' stream.
- StreamMsgLogger(Writer, Writer, int) - Constructor for class jj2000.j2k.util.StreamMsgLogger
-
Constructs a StreamMsgLogger that uses 'outstr' as the 'out' stream,
and 'errstr' as the 'err' stream.
- StreamMsgLogger(PrintWriter, PrintWriter, int) - Constructor for class jj2000.j2k.util.StreamMsgLogger
-
Constructs a StreamMsgLogger that uses 'outstr' as the 'out' stream,
and 'errstr' as the 'err' stream.
- streamNames - Variable in class loci.formats.tools.AmiraParameters
-
- streamPosition0 - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
Stream position when setInput() was called.
- streams - Variable in class loci.formats.tools.AmiraParameters
-
- streamSegment - Variable in class com.sun.media.imageio.stream.SegmentedImageInputStream
-
- StreamSegment - Class in com.sun.media.imageio.stream
-
A utility class representing a segment within a stream as a
long starting position and an int
length.
- StreamSegment() - Constructor for class com.sun.media.imageio.stream.StreamSegment
-
Constructs a
StreamSegment.
- StreamSegment(long, int) - Constructor for class com.sun.media.imageio.stream.StreamSegment
-
Constructs a
StreamSegment with a
given starting position and length.
- StreamSegmentMapper - Interface in com.sun.media.imageio.stream
-
An interface for use with the
SegmentedImageInputStream
class.
- StreamSegmentMapperImpl - Class in com.sun.media.imageio.stream
-
An implementation of the
StreamSegmentMapper interface
that requires an explicit list of the starting locations and
lengths of the source segments.
- StreamSegmentMapperImpl(long[], int[]) - Constructor for class com.sun.media.imageio.stream.StreamSegmentMapperImpl
-
- streamTypes - Variable in class loci.formats.tools.AmiraParameters
-
- strHsh_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable
-
- stride - Variable in class loci.formats.codec.RPZACodec
-
- strikeout - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- StringFormatException - Exception in jj2000.j2k.util
-
Thrown to indicate that the application has attempted to parse a
badly formatted string.
- StringFormatException() - Constructor for exception jj2000.j2k.util.StringFormatException
-
Creates the exception with an empty messgage.
- StringFormatException(String) - Constructor for exception jj2000.j2k.util.StringFormatException
-
Creates the exception with the specified detail message.
- StringIM3Record(String, int, long, int) - Constructor for class loci.formats.in.IM3Reader.StringIM3Record
-
- StringOption - Class in loci.plugins.prefs
-
A string option for one of the plugins.
- StringOption(HashMap<String, String>) - Constructor for class loci.plugins.prefs.StringOption
-
Constructs a string option with the parameters from the given map.
- StringOption(String, boolean, String, String, String, Vector<String>) - Constructor for class loci.plugins.prefs.StringOption
-
Constructs a string option with the given parameters.
- StringSpec - Class in jj2000.j2k
-
This class extends ModuleSpec class in order to hold tile-component
specifications using Strings.
- StringSpec(int, int, byte) - Constructor for class jj2000.j2k.StringSpec
-
Constructs an empty 'StringSpec' with specified number of
tile and components.
- StringSpec(int, int, byte, String, String[], J2KImageWriteParamJava, String) - Constructor for class jj2000.j2k.StringSpec
-
Constructs a new 'StringSpec' for the specified number of
components:tiles and the arguments of optName
option.
- stringTable - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- stringTable - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- stringTable - Variable in class loci.formats.in.VolocityReader
-
- STRIP_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD
-
- STRIP_OFFSETS - Static variable in class loci.formats.tiff.IFD
-
- StripByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripByteCounts
-
- STRIPE_HEIGHT - Static variable in interface jj2000.j2k.entropy.StdEntropyCoderOptions
-
The stripe height.
- stripHeader() - Method in class loci.formats.in.NativeQTReader
-
Cut off header bytes from a resource fork file.
- StripOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.StripOffsets
-
- stripOrTileByteCountsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- stripOrTileOffsetsPosition - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- strips - Variable in class loci.formats.in.PictReader
-
Vector of byte arrays representing individual rows.
- strLen_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable
-
each entry corresponds to a code and contains the length of data
that the code expands to when decoded.
- strNxt_ - Variable in class com.sun.media.imageioimpl.common.LZWStringTable
-
- STRUCTURE_LABELS_1 - Static variable in class loci.formats.in.BioRadReader
-
Structure labels.
- STRUCTURE_LABELS_2 - Static variable in class loci.formats.in.BioRadReader
-
- STRUCTURE_LABELS_3 - Static variable in class loci.formats.in.BioRadReader
-
- STRUCTURE_LABELS_4 - Static variable in class loci.formats.in.BioRadReader
-
- STRUCTURE_LABELS_5 - Static variable in class loci.formats.in.BioRadReader
-
- STRUCTURE_LABELS_6 - Static variable in class loci.formats.in.BioRadReader
-
- STUB_FIELD - Static variable in class loci.formats.services.LuraWaveServiceImpl
-
Identifying field in stub class.
- SUB - Static variable in class loci.formats.in.APNGReader
-
- SUB_IFD - Static variable in class loci.formats.tiff.IFD
-
- SUB_SEC_TIME - Static variable in class loci.formats.tiff.IFD
-
- SUB_SEC_TIME_DIGITIZED - Static variable in class loci.formats.tiff.IFD
-
- SUB_SEC_TIME_ORIGINAL - Static variable in class loci.formats.tiff.IFD
-
- subb_HH - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
-
The reference to the HH subband resulting from the
decomposition of this subband.
- subb_HH - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
The reference to the HH subband resulting from the
decomposition of this subband.
- subb_HL - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
-
The reference to the HL subband (horizontal high-pass)
resulting from the decomposition of this subband.
- subb_HL - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
The reference to the HL subband (horizontal high-pass)
resulting from the decomposition of this subband.
- subb_LH - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
-
The reference to the LH subband (vertical high-pass) resulting
from the decomposition of this subband.
- subb_LH - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
The reference to the LH subband (vertical high-pass) resulting
from the decomposition of this subband.
- subb_LL - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
-
The reference to the LL subband resulting from the
decomposition of this subband.
- subb_LL - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
The reference to the LL subband resulting from the
decomposition of this subband.
- Subband - Class in jj2000.j2k.wavelet
-
This abstract class represents a subband in a bidirectional tree structure
that describes the subband decomposition for a wavelet transform.
- Subband() - Constructor for class jj2000.j2k.wavelet.Subband
-
Creates a Subband element with all the default values.
- Subband(int, int, int, int, int, WaveletFilter[], WaveletFilter[]) - Constructor for class jj2000.j2k.wavelet.Subband
-
Creates the top-level node and the entire subband tree, with the
top-level dimensions, the number of decompositions, and the
decomposition tree as specified.
- SubbandAn - Class in jj2000.j2k.wavelet.analysis
-
This class represents a subband in a bidirectional tree structure
that describes the subband decomposition for a wavelet transform,
specifically for the analysis side.
- SubbandAn() - Constructor for class jj2000.j2k.wavelet.analysis.SubbandAn
-
Creates a SubbandAn element with all the default values.
- SubbandAn(int, int, int, int, int, WaveletFilter[], WaveletFilter[]) - Constructor for class jj2000.j2k.wavelet.analysis.SubbandAn
-
Creates the top-level node and the entire subband tree, with
the top-level dimensions, the number of decompositions, and the
decomposition tree as specified.
- SubbandRectROIMask - Class in jj2000.j2k.roi.encoder
-
This class describes the ROI mask for a single subband.
- SubbandRectROIMask(Subband, int[], int[], int[], int[], int) - Constructor for class jj2000.j2k.roi.encoder.SubbandRectROIMask
-
The constructor of the SubbandROIMask takes the dimensions of the
subband as parameters.
- SubbandROIMask - Class in jj2000.j2k.roi.encoder
-
This abstract class describes the ROI mask for a single subband.
- SubbandROIMask(int, int, int, int) - Constructor for class jj2000.j2k.roi.encoder.SubbandROIMask
-
The constructor of the SubbandROIMask takes the dimensions of the
subband as parameters
- SubbandSyn - Class in jj2000.j2k.wavelet.synthesis
-
This class represents a subband in a tree structure that describes
the subband decomposition for a wavelet transform, specifically for
the syhthesis side.
- SubbandSyn() - Constructor for class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Creates a SubbandSyn element with all the default values.
- SubbandSyn(int, int, int, int, int, WaveletFilter[], WaveletFilter[]) - Constructor for class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
Creates the top-level node and the entire subband tree, with
the top-level dimensions, the number of decompositions, and the
decomposition tree as specified.
- SubBlock() - Constructor for class loci.formats.in.ZeissCZIReader.SubBlock
-
- SubBlock(ZeissCZIReader.SubBlock) - Constructor for class loci.formats.in.ZeissCZIReader.SubBlock
-
- SubBlock() - Constructor for class loci.formats.in.ZeissLSMReader.SubBlock
-
- SUBBLOCK_BEAM_SPLITTER - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_DATA_CHANNEL - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_DETECTION_CHANNEL - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_END - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_ILLUMINATION_CHANNEL - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_LASER - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_MARKER - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_RECORDING - Static variable in class loci.formats.in.ZeissLSMReader
-
Subblock types.
- SUBBLOCK_TIMER - Static variable in class loci.formats.in.ZeissLSMReader
-
- SUBBLOCK_TRACK - Static variable in class loci.formats.in.ZeissLSMReader
-
- subbTrees - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
The subband trees for each component in the current tile.
- subbTrees - Variable in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
The subband trees for each component, in each tile.
- SUBFILE_TYPE - Static variable in class loci.formats.tiff.IFD
-
- SUBFILE_TYPE_FULL_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "SubfileType" tag.
- SUBFILE_TYPE_REDUCED_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "SubfileType" tag.
- SUBFILE_TYPE_SINGLE_PAGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "SubfileType" tag.
- SubfileType() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.SubfileType
-
- SUBJECT_DISTANCE - Static variable in class loci.formats.tiff.IFD
-
- SUBJECT_DISTANCE_RANGE - Static variable in class loci.formats.tiff.IFD
-
- SUBJECT_DISTANCE_RANGE_CLOSE_VIEW - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SubjectDistanceRange" tag.
- SUBJECT_DISTANCE_RANGE_DISTANT_VIEW - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SubjectDistanceRange" tag.
- SUBJECT_DISTANCE_RANGE_MACRO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SubjectDistanceRange" tag.
- SUBJECT_DISTANCE_RANGE_UNKNOWN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "SubjectDistanceRange" tag.
- SUBJECT_LOCATION - Static variable in class loci.formats.tiff.IFD
-
- SubjectArea() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectArea
-
- SubjectDistance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectDistance
-
- SubjectDistanceRange() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectDistanceRange
-
- SubjectLocation() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubjectLocation
-
- subResolutionIFDs - Variable in class loci.formats.in.MinimalTiffReader
-
List of sub-resolution IFDs for each IFD in the current TIFF with the
same order as
ifds.
- subsamp - Variable in class org.libjpegturbo.turbojpeg.TJCompressor
-
- subsample(Raster, int[], int, int, int, int, int, int, Rectangle) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- subsampleX - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The horizontal subsampling factor.
- subsampleX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- subsampleY - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
The vertical subsampling factor.
- subsampleY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- subsamplingX - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- subsamplingY - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- SubSecTime() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTime
-
- SubSecTimeDigitized() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTimeDigitized
-
- SubSecTimeOriginal() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.SubSecTimeOriginal
-
- subsX - Variable in class jj2000.j2k.image.ImgDataJoiner
-
The subsampling factor along the horizontal direction, for every
component
- subsY - Variable in class jj2000.j2k.image.ImgDataJoiner
-
The subsampling factor along the vertical direction, for every
component
- subTag - Variable in class loci.formats.in.OpenlabReader
-
- success - Variable in class loci.plugins.LociImporter
-
Flag indicating whether last operation was successful.
- suffix - Variable in class loci.formats.in.GIFReader
-
- SUFFIX - Static variable in class loci.formats.in.TCSReader
-
- suffixes - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- suffixes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- suffixes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- suffixes - Variable in class loci.formats.FormatHandler
-
Valid suffixes for this file format.
- SUFFIXES - Static variable in class loci.formats.gui.LegacyQTTools
-
- suffixes - Variable in class loci.formats.ImageReader
-
Valid suffixes for this file format.
- suffixes - Variable in class loci.formats.ImageWriter
-
Valid suffixes for all file format writers.
- SUFFIXES - Static variable in class loci.formats.in.FlexReader
-
- suffixes - Variable in class loci.plugins.config.FormatEntry
-
- suffixNecessary - Variable in class loci.formats.FormatReader
-
Whether the file extension matching one of the reader's suffixes
is necessary to identify the file as an instance of this format.
- suffixSufficient - Variable in class loci.formats.FormatReader
-
Whether the file extension matching one of the reader's suffixes
is sufficient to identify the file as an instance of this format.
- surfaceWind - Variable in class loci.formats.in.HRDGDFReader
-
- SVSReader - Class in loci.formats.in
-
SVSReader is the file format reader for Aperio SVS TIFF files.
- SVSReader() - Constructor for class loci.formats.in.SVSReader
-
Constructs a new SVS reader.
- swap - Variable in class loci.formats.gui.DataConverter
-
- SwapDialog - Class in loci.plugins.in
-
Bio-Formats Importer dimension swapper dialog box.
- SwapDialog(ImportProcess) - Constructor for class loci.plugins.in.SwapDialog
-
Creates a dimension swapper dialog for the Bio-Formats Importer.
- swapDimensions(String) - Method in class loci.formats.DimensionSwapper
-
Sets the input dimension order according to the given string (e.g.,
"XYZCT").
- swapDimsBox - Variable in class loci.plugins.in.MainDialog
-
- SwappableMetadata - Class in loci.formats
-
Extends
CoreMetadata to include the notion of an "input order" for planes:
the input order being the order planes are stored on disk.
- SwappableMetadata() - Constructor for class loci.formats.SwappableMetadata
-
- SwappableMetadata(IFormatReader, int) - Constructor for class loci.formats.SwappableMetadata
-
- SwappableMetadata(SwappableMetadata) - Constructor for class loci.formats.SwappableMetadata
-
- swapPixelArrays() - Method in class loci.plugins.util.RecordedImageProcessor
-
- SWATCH_SIZE - Static variable in class loci.plugins.in.ColorDialog
-
- SWEPT_FIELD_CONFOCAL - Static variable in class loci.formats.in.LegacyND2Reader
-
- switchLM - Static variable in class jj2000.j2k.entropy.decoder.MQDecoder
-
Whether LPS and MPS should be switched
- switchLM - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
-
Whether LPS and MPS should be switched
- symbufT - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Buffer for symbols to send to the MQ-coder, for each thread.
- sync() - Method in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Synchronizes this object with the underlying byte based input.
- syncPlane() - Method in class loci.plugins.util.DataBrowser
-
Updates the ImagePlus's displayed plane to match the slider values.
- syncSliders() - Method in class loci.plugins.util.DataBrowser
-
Updates the slider values to match the ImagePlus's displayed plane.
- synFD - Variable in class loci.formats.in.SDTInfo
-
- synHF - Variable in class loci.formats.in.SDTInfo
-
- syntaxError(String) - Method in class loci.formats.tools.AmiraParameters
-
- synTH - Variable in class loci.formats.in.SDTInfo
-
- synthetize_hpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilter
-
Reconstructs the output signal by the synthesis filter,
recomposing the low-pass and high-pass input signals in one
output signal.
- synthetize_hpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat
-
A specific version of the synthetize_hpf() method that works on float
data.
- synthetize_hpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat
-
The general version of the synthetize_hpf() method, it just calls
the specialized version.
- synthetize_hpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
An implementation of the synthetize_hpf() method that works on int
data, for the inverse 9x7 wavelet transform using the lifting
scheme.
- synthetize_hpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt
-
A specific version of the synthetize_hpf() method that works on int
data.
- synthetize_hpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt
-
The general version of the synthetize_hpf() method, it just calls
the specialized version.
- synthetize_hpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
An implementation of the synthetize_hpf() method that works on int
data, for the inverse 5x3 wavelet transform using thelifting
scheme.
- synthetize_lpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilter
-
Reconstructs the output signal by the synthesis filter,
recomposing the low-pass and high-pass input signals in one
output signal.
- synthetize_lpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat
-
A specific version of the synthetize_lpf() method that works on float
data.
- synthetize_lpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat
-
The general version of the synthetize_lpf() method, it just calls
the specialized version.
- synthetize_lpf(float[], int, int, int, float[], int, int, int, float[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
An implementation of the synthetize_lpf() method that works on int
data, for the inverse 9x7 wavelet transform using the lifting
scheme.
- synthetize_lpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt
-
A specific version of the synthetize_lpf() method that works on int
data.
- synthetize_lpf(Object, int, int, int, Object, int, int, int, Object, int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterInt
-
The general version of the synthetize_lpf() method, it just calls
the specialized version.
- synthetize_lpf(int[], int, int, int, int[], int, int, int, int[], int, int) - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
An implementation of the synthetize_lpf() method that works on int
data, for the inverse 5x3 wavelet transform using the lifting
scheme.
- SynWTFilter - Class in jj2000.j2k.wavelet.synthesis
-
This abstract class defines the methods of all synthesis wavelet
filters.
- SynWTFilter() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilter
-
- SynWTFilterFloat - Class in jj2000.j2k.wavelet.synthesis
-
This extends the synthesis wavelet filter general definitions of
SynWTFilter by adding methods that work for float data
specifically.
- SynWTFilterFloat() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterFloat
-
- SynWTFilterFloatLift9x7 - Class in jj2000.j2k.wavelet.synthesis
-
This class inherits from the synthesis wavelet filter definition for int
data.
- SynWTFilterFloatLift9x7() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
- SynWTFilterInt - Class in jj2000.j2k.wavelet.synthesis
-
This extends the synthesis wavelet filter general definitions of
SynWTFilter by adding methods that work for int data
specifically.
- SynWTFilterInt() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterInt
-
- SynWTFilterIntLift5x3 - Class in jj2000.j2k.wavelet.synthesis
-
This class inherits from the synthesis wavelet filter definition for int
data.
- SynWTFilterIntLift5x3() - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
- SynWTFilterSpec - Class in jj2000.j2k.wavelet.synthesis
-
This class extends ModuleSpec class for synthesis filters
specification holding purpose.
- SynWTFilterSpec(int, int, byte) - Constructor for class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
-
Constructs a new 'SynWTFilterSpec' for the specified number of
components and tiles.
- synZC - Variable in class loci.formats.in.SDTInfo
-
- SZ_INCR - Static variable in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
The increment size for the buffer, 16 bytes.
- SZ_INCR - Static variable in class jj2000.j2k.entropy.encoder.LayersInfo
-
The size increment for the arrays
- SZ_INIT - Static variable in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
The initial size for the buffer, 32 bytes.
- SZ_INIT - Static variable in class jj2000.j2k.entropy.encoder.LayersInfo
-
The initial size for the arrays: 10
T
- t - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- T - Static variable in class loci.formats.in.CellSensReader
-
- t - Variable in class loci.formats.in.MicromanagerReader.Index
-
- t - Variable in class loci.formats.in.OperettaReader.Plane
-
- T4_OPTIONS - Static variable in class loci.formats.tiff.IFD
-
- T4_OPTIONS_2D_CODING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A mask to be used with the "T4Options" tag.
- T4_OPTIONS_EOL_BYTE_ALIGNED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A mask to be used with the "T4Options" tag.
- T4_OPTIONS_UNCOMPRESSED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A mask to be used with the "T4Options" tag.
- T4Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T4Options
-
- t4Options - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- T6_OPTIONS - Static variable in class loci.formats.tiff.IFD
-
- T6_OPTIONS_UNCOMPRESSED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A mask to be used with the "T6Options" tag.
- T6Options() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.T6Options
-
- t6Options - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- T_AXIS - Static variable in class loci.formats.AxisGuesser
-
Axis type for time points.
- T_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- T_NUM - Static variable in class loci.formats.FormatTools
-
- T_PREFIXES - Static variable in class loci.formats.AxisGuesser
-
Prefixes indicating time dimension.
- T_STRING - Static variable in class loci.formats.in.SDTInfo
-
- table - Variable in class loci.formats.codec.HuffmanCodecOptions
-
- table1 - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- table2 - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- tableIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- tableIndex - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- tables - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
-
- TAC_GAIN - Static variable in class loci.formats.in.SPCReader
-
- TAC_RANGE - Static variable in class loci.formats.in.SPCReader
-
- tacG - Variable in class loci.formats.in.SDTInfo
-
- tacLH - Variable in class loci.formats.in.SDTInfo
-
- tacLL - Variable in class loci.formats.in.SDTInfo
-
- tacOF - Variable in class loci.formats.in.SDTInfo
-
- tacR - Variable in class loci.formats.in.SDTInfo
-
- tag - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField
-
The tag.
- Tag(int, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
-
Constructor.
- Tag(int, String, BaseZeissReader.Context) - Constructor for class loci.formats.in.BaseZeissReader.Tag
-
Constructor.
- tag - Variable in class loci.formats.in.OpenlabReader
-
- tag - Variable in class loci.formats.in.PhotoshopTiffReader
-
- Tag(int) - Constructor for class loci.formats.in.ZeissTIFFHandler.Tag
-
Constructor.
- tag - Variable in class loci.formats.tiff.TiffIFDEntry
-
The Tag that identifies the field.
- TAG_APERTURE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the lens aperture (type RATIONAL).
- TAG_ARTIST - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Artist" tag.
- TAG_BAD_FAX_LINES - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
Tag indicating the number of bad fax lines (type SHORT or LONG).
- TAG_BITS_PER_SAMPLE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "BitsPerSample" tag.
- TAG_BRIGHTNESS_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the value of brightness (type SRATIONAL).
- TAG_CELL_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "cell_length" tag.
- TAG_CELL_WIDTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Cell_Width" tag.
- TAG_CFA_PATTERN - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the color filter array geometric pattern of
the image sensor when a one-chip color area sensor if used
(type UNDEFINED).
- TAG_CHANNEL - Static variable in class loci.formats.in.NDPISReader
-
- TAG_CLEAN_FAX_DATA - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
Tag indicating the number of lines of clean fax data (type
SHORT).
- TAG_COLOR_MAP - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "ColorMap" tag.
- TAG_COLOR_SPACE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the color space information (type SHORT).
- TAG_COMPONENTS_CONFIGURATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag containing the components configuration information (type
UNDEFINED, count = 4).
- TAG_COMPRESSED_BITS_PER_PIXEL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the number of compressed bits per pixel
(type RATIONAL).
- TAG_COMPRESSION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Compression" tag.
- TAG_CONSECUTIVE_BAD_LINES - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
Tag indicating the number of consecutive bad lines (type
SHORT or LONG).
- TAG_CONTRAST - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the direction of contrast processing applied
by the camera when the image was shot.
- TAG_COPYRIGHT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Copyright" tag.
- tag_count - Variable in class loci.formats.in.ZeissTIFFHandler
-
- TAG_CUSTOM_RENDERED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the use of special processing on image data,
such as rendering geared to output.
- TAG_DATE_TIME - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "DateTime" tag.
- TAG_DATE_TIME_DIGITIZED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the date and time when the image was stored as
digital data (type ASCII).
- TAG_DATE_TIME_ORIGINAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the date and time when the original image was
generated (type ASCII).
- TAG_DEVICE_SETTING_DESCRIPTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating information on the picture-taking conditions
of a particular camera model.
- TAG_DIGITAL_ZOOM_RATIO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the digital zoom ratio when the image was shot.
- TAG_DOCUMENT_NAME - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "document_name" tag.
- TAG_DOT_RANGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "DotRange" tag.
- TAG_EMISSION_WAVELENGTH - Static variable in class loci.formats.in.NDPISReader
-
- TAG_EXIF_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet
-
Tag pointing to the EXIF IFD (type LONG).
- TAG_EXIF_VERSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag containing the EXIF version number (type UNDEFINED, count =
4).
- TAG_EXPOSURE_BIAS_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the exposure bias (type SRATIONAL).
- TAG_EXPOSURE_INDEX - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the exposure index selected on the camera or
input device at the time the image was captured (type
RATIONAL).
- TAG_EXPOSURE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the exposure mode set when the image was shot.
- TAG_EXPOSURE_PROGRAM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the class of the programs used to set exposure
when the picture was taken (type SHORT).
- TAG_EXPOSURE_TIME - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the exposure time, in seconds (type RATIONAL).
- TAG_EXTRA_SAMPLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "ExtraSamples" tag.
- TAG_F_NUMBER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the F number (type RATIONAL).
- TAG_FILE_SOURCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the image source (type UNDEFINED).
- TAG_FILL_ORDER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "fill_order" tag.
- TAG_FLASH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the flash firing status and flash return
status (type SHORT).
- TAG_FLASH_ENERGY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the strobe energy at the time the image was
captured, as measured in Beam Candle Power Seconds (BCPS) (type
RATIONAL).
- TAG_FLASHPIX_VERSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the FlashPix version number (type UNDEFINED,
count = 4).
- TAG_FOCAL_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the actual focal length of the lens, in
millimeters (type RATIONAL).
- TAG_FOCAL_LENGTH_IN_35MM_FILM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the equivalent focal length assuming a 35mm film
camera, in millimeters.
- TAG_FOCAL_PLANE_RESOLUTION_UNIT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
Indicates the unit for measuring FocalPlaneXResolution and
FocalPlaneYResolution (type SHORT).
- TAG_FOCAL_PLANE_X_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
Indicates the number of pixels in the image width (X) direction
per FocalPlaneResolutionUnit on the camera focal plane (type
RATIONAL).
- TAG_FOCAL_PLANE_Y_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
Indicate the number of pixels in the image height (Y) direction
per FocalPlaneResolutionUnit on the camera focal plane (type
RATIONAL).
- TAG_FREE_BYTE_COUNTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "FreeByteCounts" tag.
- TAG_FREE_OFFSETS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "FreeOffsets" tag.
- TAG_GAIN_CONTROL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the degree of overall image gain adjustment.
- TAG_GEO_ASCII_PARAMS - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
A tag used to store all ASCII-values GeoKeys.
- TAG_GEO_DOUBLE_PARAMS - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
A tag used to store all
double-values GeoKeys.
- TAG_GEO_KEY_DIRECTORY - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
A tag used to store the GeoKey directory.
- TAG_GPS_ALTITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Altitude (type RATIONAL, count = 1).
- TAG_GPS_ALTITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Altitude reference (type BYTE, count = 1);
- TAG_GPS_AREA_INFORMATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Name of GPS area (type UNDEFINED).
- TAG_GPS_DATE_STAMP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the GPS date (type ASCII, count 11).
- TAG_GPS_DEST_BEARING - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Bearing of destination (type RATIONAL, count = 1).
- TAG_GPS_DEST_BEARING_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Reference for bearing of destination (type ASCII,
count = 2).
- TAG_GPS_DEST_DISTANCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Distance to destination (type RATIONAL, count = 1).
- TAG_GPS_DEST_DISTANCE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Reference for distance to destination (type ASCII,
count = 2).
- TAG_GPS_DEST_LATITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Latitude of destination (type RATIONAL, count = 3).
- TAG_GPS_DEST_LATITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Reference for latitude of destination (type
ASCII, count = 2).
- TAG_GPS_DEST_LONGITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Longitude of destination (type RATIONAL,
count = 3).
- TAG_GPS_DEST_LONGITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Reference for longitude of destination (type
ASCII, count = 2).
- TAG_GPS_DIFFERENTIAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the GPS differential correction (type SHORT,
count = 1).
- TAG_GPS_DOP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Measurement precision (type RATIONAL, count = 1).
- TAG_GPS_IMG_DIRECTION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Direction of image (type RATIONAL, count = 1).
- TAG_GPS_IMG_DIRECTION_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Reference for direction of image (type ASCII,
count = 2).
- TAG_GPS_INFO_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet
-
Tag pointing to a GPS info IFD (type LONG).
- TAG_GPS_INFO_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
Deprecated.
Superseded by
EXIFParentTIFFTagSet.TAG_GPS_INFO_IFD_POINTER
- TAG_GPS_LATITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Latitude (type RATIONAL, count = 3).
- TAG_GPS_LATITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the North or South latitude (type ASCII, count = 2).
- TAG_GPS_LONGITUDE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Longitude (type RATIONAL, count = 3).
- TAG_GPS_LONGITUDE_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the East or West Longitude (type ASCII, count = 2).
- TAG_GPS_MAP_DATUM - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Geodetic survey data used (type ASCII).
- TAG_GPS_MEASURE_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the GPS measurement mode (type ASCII, count = 2).
- TAG_GPS_PROCESSING_METHOD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Name of GPS processing method (type UNDEFINED).
- TAG_GPS_SATELLITES - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the GPS satellites used for measurement (type ASCII).
- TAG_GPS_SPEED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Speed of GPS receiver (type RATIONAL, count = 1).
- TAG_GPS_SPEED_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Speed unit (type ASCII, count = 2).
- TAG_GPS_STATUS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the GPS receiver status (type ASCII, count = 2).
- TAG_GPS_TIME_STAMP - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the GPS time (atomic clock) (type RATIONAL, count = 3).
- TAG_GPS_TRACK - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Direction of movement (type RATIONAL, count = 1).
- TAG_GPS_TRACK_REF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the Reference for direction of movement (type ASCII,
count = 2).
- TAG_GPS_VERSION_ID - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
A tag indicating the GPS tag version (type BYTE, count = 4).
- TAG_GRAY_RESPONSE_CURVE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "GrayResponseCurve" tag.
- TAG_GRAY_RESPONSE_UNIT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "GrayResponseUnit" tag.
- TAG_HALFTONE_HINTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "HalftoneHints" tag.
- TAG_HOST_COMPUTER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "HostComputer" tag.
- TAG_ICC_PROFILE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "ICC Profile" tag.
- TAG_IMAGE_DESCRIPTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Image_description" tag.
- TAG_IMAGE_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "ImageLength" tag.
- TAG_IMAGE_UNIQUE_ID - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating an identifier assigned uniquely to each image.
- TAG_IMAGE_WIDTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "ImageWidth" tag.
- TAG_INK_NAMES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "InkNames" tag.
- TAG_INK_SET - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "InkSet" tag.
- TAG_INTEROPERABILITY_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag pointing to an interoperability IFD (type LONG).
- TAG_INTEROPERABILITY_INDEX - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
-
A tag indicating the identification of the Interoperability rule
(type ASCII).
- TAG_ISO_SPEED_RATINGS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the ISO speed and ISO latitude of the camera
or input device, as specified in ISO 12232xiv (type
SHORT).
- TAG_JPEG_AC_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGACTables" tag.
- TAG_JPEG_DC_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGDCTables" tag.
- TAG_JPEG_INTERCHANGE_FORMAT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGInterchangeFormat" tag.
- TAG_JPEG_INTERCHANGE_FORMAT_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGInterchangeFormatLength" tag.
- TAG_JPEG_LOSSLESS_PREDICTORS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGLosslessPredictors" tag.
- TAG_JPEG_POINT_TRANSFORMS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGPointTransforms" tag.
- TAG_JPEG_PROC - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGProc" tag.
- TAG_JPEG_Q_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGQTables" tag.
- TAG_JPEG_RESTART_INTERVAL - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGRestartInterval" tag.
- TAG_JPEG_TABLES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "JPEGTables" tag.
- TAG_LIGHT_SOURCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicatingthe kind of light source (type SHORT).
- TAG_MAKE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Make" tag.
- TAG_MAKER_NOTE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating a manufacturer-defined maker note (type
UNDEFINED).
- TAG_MARKER_NOTE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
Deprecated.
Superseded by
EXIFTIFFTagSet.TAG_MAKER_NOTE.
- TAG_MAX_APERTURE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the smallest F number of the lens (type
RATIONAL).
- TAG_MAX_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Max_sample_value" tag.
- TAG_METERING_MODE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the metering mode (type SHORT).
- TAG_MIN_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Min_sample_value" tag.
- TAG_MODEL - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Model" tag.
- TAG_MODEL_PIXEL_SCALE - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
A tag used to specify the size of raster pixel spacing in
model space units.
- TAG_MODEL_TIE_POINT - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
A tag used to store raster->model tiepoint pairs.
- TAG_MODEL_TRANSFORMATION - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
A tag used to specify the transformation matrix between the raster
space and the model space.
- TAG_NEW_SUBFILE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "NewSubfileType" tag.
- TAG_NUMBER_OF_INKS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "NumberOfInks" tag.
- TAG_OECF - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the optoelectric conversion function,
specified in ISO 14254xv (type UNDEFINED).
- TAG_ORIENTATION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Orientation" tag.
- TAG_PAGE_NAME - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "PageName" tag.
- TAG_PAGE_NUMBER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "PageNumber" tag.
- TAG_PHOTOMETRIC_INTERPRETATION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "PhotometricInterpretation" tag.
- TAG_PIXEL_X_DIMENSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the pixel X dimension (type SHORT or LONG).
- TAG_PIXEL_Y_DIMENSION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the pixel Y dimension (type SHORT or LONG).
- TAG_PLANAR_CONFIGURATION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "PlanarConfiguration" tag.
- TAG_PREDICTOR - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Predictor" tag.
- TAG_PRIMARY_CHROMATICITES - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "PrimaryChromaticites" tag.
- TAG_REFERENCE_BLACK_WHITE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "ReferenceBlackWhite" tag.
- TAG_RELATED_SOUND_FILE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the name of a related sound file (type ASCII).
- TAG_RESOLUTION_UNIT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "ResolutionUnit" tag.
- TAG_ROWS_PER_STRIP - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Rows_per_strip" tag.
- TAG_S_MAX_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "SMaxSampleValue" tag.
- TAG_S_MIN_SAMPLE_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "SMinSampleValue" tag.
- TAG_SAMPLE_FORMAT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "SampleFormat" tag.
- TAG_SAMPLES_PER_PIXEL - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Samples_per_pixel" tag.
- TAG_SATURATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the direction of saturation processing
applied by the camera when the image was shot.
- TAG_SCENE_CAPTURE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the type of scene that was shot.
- TAG_SCENE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the type of scene (type UNDEFINED).
- TAG_SENSING_METHOD - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the sensor type on the camera or input device
(type SHORT).
- TAG_SHARPNESS - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the direction of sharpness processing
applied by the camera when the image was shot.
- TAG_SHUTTER_SPEED_VALUE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the shutter speed (type SRATIONAL).
- TAG_SOFTWARE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Software" tag.
- TAG_SPATIAL_FREQUENCY_RESPONSE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the camera or input device spatial frequency
table and SFR values in the direction of image width, image
height, and diagonal direction, as specified in ISO
12233xvi (type UNDEFINED).
- TAG_SPECTRAL_SENSITIVITY - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the spectral sensitivity of each channel of
the camera used (type ASCII).
- TAG_STRIP_BYTE_COUNTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Strip_byte_counts" tag.
- TAG_STRIP_OFFSETS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Strip_offsets" tag.
- TAG_SUB_SEC_TIME - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag used to record fractions of seconds for the "DateTime" tag
(type ASCII).
- TAG_SUB_SEC_TIME_DIGITIZED - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag used to record fractions of seconds for the
"DateTimeDigitized" tag (type ASCII).
- TAG_SUB_SEC_TIME_ORIGINAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag used to record fractions of seconds for the
"DateTimeOriginal" tag (type ASCII).
- TAG_SUBFILE_TYPE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "SubfileType" tag.
- TAG_SUBJECT_AREA - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the location and area of the main subject in
the overall scene.
- TAG_SUBJECT_DISTANCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the distance to the subject, in meters (type
RATIONAL).
- TAG_SUBJECT_DISTANCE_RANGE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the distance to the subject.
- TAG_SUBJECT_LOCATION - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the column and row of the center pixel of the
main subject in the scene (type SHORT, count = 2).
- TAG_T4_OPTIONS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "T4Options" tag.
- TAG_T6_OPTIONS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "T6Options" tag.
- TAG_TARGET_PRINTER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "TargetPrinter" tag.
- TAG_THRESHHOLDING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "Threshholding" tag.
- TAG_TILE_BYTE_COUNTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "TileByteCounts" tag.
- TAG_TILE_LENGTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "TileLength" tag.
- TAG_TILE_OFFSETS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "TileOffsets" tag.
- TAG_TILE_WIDTH - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "TileWidth" tag.
- TAG_TRANSFER_FUNCTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "TransferFunction" tag.
- TAG_TRANSFER_RANGE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "TransferRange" tag.
- TAG_USER_COMMENT - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating a user comment (type UNDEFINED).
- TAG_WHITE_BALANCE - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A tag indicating the white balance mode set when the image was shot.
- TAG_WHITE_POINT - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "WhitePoint" tag.
- TAG_X_POSITION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "XPosition" tag.
- TAG_X_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "XResolution" tag.
- TAG_Y_CB_CR_COEFFICIENTS - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "YCbCrCoefficients" tag.
- TAG_Y_CB_CR_POSITIONING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "YCbCrPositioning" tag.
- TAG_Y_CB_CR_SUBSAMPLING - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "YCbCrSubsampling" tag.
- TAG_Y_POSITION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "YPosition" tag.
- TAG_Y_RESOLUTION - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
Constant specifying the "YResolution" tag.
- tagID - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- taglist - Variable in class loci.formats.in.ZeissTIFFReader.Plane
-
- tagNumber - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField
-
The tag number.
- tags - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
- tags - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
-
- tags - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet
-
- tags - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
- tags - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
- tags - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
- tags - Variable in class loci.formats.in.ZeissTIFFHandler.TagSet
-
- tags - Variable in class loci.formats.in.ZeissTIFFReader.Plane
-
- tagSet - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
- tagset - Variable in class loci.formats.in.ZeissTIFFHandler.Plane
-
- tagset - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling
-
- TagSet() - Constructor for class loci.formats.in.ZeissTIFFHandler.TagSet
-
- tagSets - Variable in class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
The
TIFFTagSets associated with this directory.
- tagSets - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- tagsToParse - Variable in class loci.formats.in.BaseZeissReader
-
- TagTreeDecoder - Class in jj2000.j2k.codestream.reader
-
This class implements the tag tree decoder.
- TagTreeDecoder(int, int) - Constructor for class jj2000.j2k.codestream.reader.TagTreeDecoder
-
Creates a tag tree decoder with 'w' elements along the
horizontal dimension and 'h' elements along the vertical
direction.
- TagTreeEncoder - Class in jj2000.j2k.codestream.writer
-
This class implements the tag tree encoder.
- TagTreeEncoder(int, int) - Constructor for class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Creates a tag tree encoder with 'w' elements along the
horizontal dimension and 'h' elements along the vertical
direction.
- TagTreeEncoder(int, int, int[]) - Constructor for class jj2000.j2k.codestream.writer.TagTreeEncoder
-
Creates a tag tree encoder with 'w' elements along the
horizontal dimension and 'h' elements along the vertical
direction.
- TargaReader - Class in loci.formats.in
-
File format reader for Truevision Targa files.
- TargaReader() - Constructor for class loci.formats.in.TargaReader
-
Constructs a new Targa reader.
- TargaRLECodec - Class in loci.formats.codec
-
This class implements Targa RLE decompression.
- TargaRLECodec() - Constructor for class loci.formats.codec.TargaRLECodec
-
- target - Variable in class jj2000.j2k.util.ThreadPool.ThreadPoolThread
-
- TARGET_PRINTER - Static variable in class loci.formats.tiff.IFD
-
- targetE - Variable in class jj2000.j2k.util.ThreadPool
-
The last error thrown by a target.
- TargetPrinter() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TargetPrinter
-
- targetRE - Variable in class jj2000.j2k.util.ThreadPool
-
The last runtime exception thrown by a target.
- targetRes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Image resolution level to generate
- tBegin - Variable in class loci.plugins.in.ImporterOptions
-
- TCHAR - Static variable in class loci.formats.in.CellSensReader
-
- tChoice - Variable in class loci.formats.gui.DataConverter
-
- tChoice - Variable in class loci.plugins.in.SwapDialog
-
- TCSReader - Class in loci.formats.in
-
TCSReader is the file format reader for Leica TCS TIFF files and their
companion XML file.
- TCSReader() - Constructor for class loci.formats.in.TCSReader
-
- tcx0 - Variable in class jj2000.j2k.image.Tiler
-
The horizontal coordinates of the upper-left corner of the components
in the current tile
- tcy0 - Variable in class jj2000.j2k.image.Tiler
-
The vertical coordinates of the upper-left corner of the components in
the current tile.
- tdepth - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
The bit-depths of transformed components
- tDim - Variable in class loci.formats.out.AVIWriter
-
- tempEph - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Flag indicating whether EPH marker was only intended for parsing in
This class and should be removed
- TEMPERATURE - Static variable in class loci.formats.in.FluoviewReader
-
- temperature - Variable in class loci.formats.in.FluoviewReader
-
- temperature - Variable in class loci.formats.in.InCellReader
-
- temperature - Variable in class loci.formats.in.MetamorphHandler
-
- temperature - Variable in class loci.formats.in.MicromanagerReader.Position
-
- temperature - Variable in class loci.formats.in.ND2Handler
-
- temperature - Variable in class loci.formats.in.ZeissCZIReader
-
- TEMPERATURE_TARGET - Static variable in class loci.formats.in.CellSensReader
-
- tempFile - Variable in class loci.formats.Memoizer
-
- templateFile - Variable in class loci.formats.in.MIASReader
-
- tempSop - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Flag indicating whether SOP marker was only intended for parsing in
This class and should be removed
- tempZ - Variable in class loci.formats.in.MetamorphReader
-
- tEnd - Variable in class loci.plugins.in.ImporterOptions
-
- TERM_EASY - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The identifier for the easy termination that is simpler than the
'TERM_NEAR_OPT' one but slightly less efficient.
- TERM_FULL - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The identifier fort the termination that uses a full flush.
- TERM_NEAR_OPT - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The identifier for the termination that uses the near optimal length
calculation to terminate the arithmetic codewrod
- TERM_PRED_ER - Static variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The identifier for the predictable termination policy for error
resilience.
- termCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Black and white terminating code table.
- termCodesBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Terminating codes for black runs.
- termCodesWhite - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Terminating codes for white runs.
- terminate() - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
Terminates the bit stream by calling 'flush()' and then 'reset()'.
- terminate() - Method in class jj2000.j2k.entropy.encoder.MQCoder
-
This function flushes the remaining encoded bits and makes sure that
enough information is written to the bit stream to be able to finish
decoding, and then it reinitializes the internal state of the MQ coder
but without modifying the context states.
- terminateOnByte - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriteParamJava
-
If this is enabled the codeword (raw or MQ) is terminated on a byte
boundary after each coding pass.
- terminateProgressWatch() - Method in interface jj2000.j2k.util.ProgressWatch
-
Terminate the progress watch process
- test() - Method in class loci.formats.codec.BaseCodec
-
Main testing method default implementation.
- text - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- text - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- TEXT - Static variable in class loci.formats.in.LeicaHandler.ROI
-
- text - Variable in class loci.formats.in.LeicaHandler.ROI
-
- TEXT - Static variable in class loci.formats.in.LIFReader.ROI
-
- text - Variable in class loci.formats.in.LIFReader.ROI
-
- TEXT - Static variable in class loci.formats.in.ZeissLSMReader
-
Drawing element types.
- textAlignment - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- TextAlignment(int) - Constructor for enum loci.formats.in.BaseZeissReader.TextAlignment
-
- textArea - Variable in class loci.formats.tools.EditTiffG
-
- textArea - Variable in class loci.plugins.config.TextAreaWriter
-
Text area component to which output should be written.
- TextAreaWriter - Class in loci.plugins.config
-
Writer implementation that writes to a JTextArea document.
- TextAreaWriter(JTextArea) - Constructor for class loci.plugins.config.TextAreaWriter
-
Constructs a new TextAreaWriter around the given text area component.
- textBackgroundColor - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- textChannelNames - Variable in class loci.formats.in.NativeND2Reader
-
- textColour - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- textData - Variable in class loci.formats.in.NativeND2Reader
-
- textEmissionWavelengths - Variable in class loci.formats.in.NativeND2Reader
-
- textForegroundColor - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- textGridHeight - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- textGridLeft - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- textGridTop - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- textGridWidth - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- TextLine(String, Font, int, int) - Constructor for class loci.formats.tools.MakeTestOmeTiff.TextLine
-
- TextReader - Class in loci.formats.in
-
Reader for text files containing tables of data.
- TextReader() - Constructor for class loci.formats.in.TextReader
-
Constructs a new text reader.
- textureOffset - Variable in class loci.formats.in.AliconaReader
-
Image offset.
- theFile - Variable in class jj2000.j2k.io.BufferedRandomAccessFile
-
The RandomAccessFile associated with the buffer
- theImage - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
- theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFGPSTagSet
-
- theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFInteroperabilityTagSet
-
- theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFParentTIFFTagSet
-
- theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
- theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.FaxTIFFTagSet
-
- theInstance - Static variable in class com.sun.media.imageio.plugins.tiff.GeoTIFFTagSet
-
- theInstance - Static variable in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
-
- theInstance - Static variable in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
-
- theInstance - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
-
- theInstance - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
-
- theStreamMetadata - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
The stream metadata of a sequence.
- THIRD_ID - Static variable in class loci.formats.in.CellSensReader
-
- thisField - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- ThreadPool - Class in jj2000.j2k.util
-
This class implements a thread pool.
- ThreadPool(int, int, String) - Constructor for class jj2000.j2k.util.ThreadPool
-
Creates a new thread pool of the given size, thread priority and pool
name.
- ThreadPool.ThreadPoolThread - Class in jj2000.j2k.util
-
The threads that are managed by the pool.
- ThreadPoolThread(int, String) - Constructor for class jj2000.j2k.util.ThreadPool.ThreadPoolThread
-
Creates a ThreadPoolThread object, setting its name according to
the given 'idx', daemon type and the priority to the one of the
pool.
- THREADS_PRIORITY_INC - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The increase in priority for the compressor threads, currently 3.
- THREADS_PROP_NAME - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The Java system property name for the number of threads to use:
jj2000.j2k.entropy.encoder.StdEntropyCoder.nthreads
- THREE - Static variable in class loci.formats.AxisGuesser
-
- Threshholding() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.Threshholding
-
- THRESHHOLDING - Static variable in class loci.formats.tiff.IFD
-
- THRESHHOLDING_NONE - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Thresholding" tag.
- THRESHHOLDING_ORDERED_DITHER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Thresholding" tag.
- THRESHHOLDING_RANDOMIZED_DITHER - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "Thresholding" tag.
- THRESHOLD - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- threshold(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- throwBadBlock(String) - Method in class loci.formats.FilePatternBlock
-
- throwBadBlock(String, Throwable) - Method in class loci.formats.FilePatternBlock
-
- THUMB_TAG_2 - Static variable in class loci.formats.in.NDPIReader
-
- thumbId - Variable in class loci.formats.in.FV1000Reader
-
Name of thumbnail file.
- ThumbLoader - Class in loci.plugins.in
-
Loads thumbnails for Bio-Formats Importer
series chooser in a separate thread.
- ThumbLoader(IFormatReader, Panel[], Dialog) - Constructor for class loci.plugins.in.ThumbLoader
-
Constructs a new thumbnail loader.
- ThumbLoader.SeriesInfo - Class in loci.plugins.in
-
Helper class for sorting series by image plane size.
- thumbnail - Variable in class loci.formats.CoreMetadata
-
Indicates whether or not this series is a lower-resolution copy of
another series.
- THUMBNAIL_DIMENSION - Static variable in class loci.formats.FormatReader
-
Default thumbnail width and height.
- thumbnailComplete(ImageReader) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- thumbnailComplete(ImageWriter) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- thumbnailFile - Variable in class loci.formats.in.InCellReader.Image
-
- thumbnailIFDs - Variable in class loci.formats.in.MinimalTiffReader
-
List of thumbnail IFDs for the current TIFF.
- thumbnailProgress(ImageReader, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- thumbnailProgress(ImageWriter, float) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- thumbnailStarted(ImageReader, int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader.EmbeddedProgressAdapter
-
- thumbnailStarted(ImageWriter, int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- thumbReader - Variable in class loci.formats.in.FV1000Reader
-
Helper reader for thumbnail.
- thumbReader - Variable in class loci.plugins.in.SeriesDialog
-
- thumbSizeX - Variable in class loci.formats.CoreMetadata
-
Width (in pixels) of thumbnail images in this series.
- thumbSizeX - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- thumbSizeY - Variable in class loci.formats.CoreMetadata
-
Height (in pixels) of thumbnail images in this series.
- tIdx - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Index of the current tile
- tIdx - Variable in class jj2000.j2k.image.ImgDataAdapter
-
Index of the current tile
- tIdx - Variable in class jj2000.j2k.wavelet.synthesis.MultiResImgDataAdapter
-
Index of the current tile
- tiff - Variable in class loci.formats.in.LeicaReader
-
Helper readers.
- tiff - Variable in class loci.formats.in.PerkinElmerReader
-
Helper reader.
- tiff - Variable in class loci.formats.in.PrairieReader
-
Helper reader for opening images.
- TIFF_ASCII - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for null-terminated ASCII strings.
- TIFF_BYTE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 8 bit unsigned integers.
- TIFF_DOUBLE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 64 bit IEEE doubles.
- TIFF_EPS_STANDARD - Static variable in class loci.formats.in.DNGReader
-
- TIFF_EPS_STANDARD - Static variable in class loci.formats.in.NikonReader
-
- TIFF_FLOAT - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 32 bit IEEE floats.
- TIFF_IFD - Static variable in class loci.formats.in.CellSensReader
-
- TIFF_IFD_POINTER - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for IFD pointer defined in TIFF Tech Note 1 in
TIFF Specification Supplement 1.
- TIFF_LONG - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 32 bit unsigned integers.
- TIFF_RATIONAL - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for pairs of 32 bit unsigned integers.
- TIFF_SBYTE - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 8 bit signed integers.
- TIFF_SHORT - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 16 bit unsigned integers.
- TIFF_SLONG - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 32 bit signed integers.
- TIFF_SRATIONAL - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for pairs of 32 bit signed integers.
- TIFF_SSHORT - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 16 bit signed integers.
- TIFF_SUFFIXES - Static variable in class loci.formats.in.TiffReader
-
- TIFF_SUFFIXES - Static variable in class loci.formats.in.ZeissTIFFReader
-
- TIFF_UNDEFINED - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Flag for 8 bit uninterpreted bytes.
- TIFFAttrInfo - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFAttrInfo() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo
-
- TIFFBaseJPEGCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
Base class for all possible forms of JPEG compression in TIFF.
- TIFFBaseJPEGCompressor(String, int, boolean, ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
- TIFFBaseJPEGCompressor.IIOByteArrayOutputStream - Class in com.sun.media.imageioimpl.plugins.tiff
-
A
ByteArrayOutputStream which allows writing to an
ImageOutputStream.
- TIFFCIELabColorConverter - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFCIELabColorConverter() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- TIFFColorConverter - Class in com.sun.media.imageio.plugins.tiff
-
An abstract class that performs simple color conversion on 3-banded source
images, for use with the TIFF Image I/O plug-in.
- TIFFColorConverter() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFColorConverter
-
Constructs an instance of a
TIFFColorConverter.
- TiffCompression - Enum in loci.formats.tiff
-
Utility class for performing compression operations with a TIFF file.
- TiffCompression(int, Codec, String) - Constructor for enum loci.formats.tiff.TiffCompression
-
Default constructor.
- TIFFCompressionTypes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Supported TIFF compression types.
- TIFFCompressor - Class in com.sun.media.imageio.plugins.tiff
-
An abstract superclass for pluggable TIFF compressors.
- TIFFCompressor(String, int, boolean) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
Creates a compressor object for use in compressing TIFF data.
- TiffConstants - Class in loci.formats.tiff
-
Generally useful TIFF-related constants.
- TiffConstants() - Constructor for class loci.formats.tiff.TiffConstants
-
- TIFFDecompressor - Class in com.sun.media.imageio.plugins.tiff
-
A class defining a pluggable TIFF decompressor.
- TIFFDecompressor() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFDecompressor
-
- TIFFDeflateCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
Compressor for Deflate compression.
- TIFFDeflateCompressor(ImageWriteParam, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateCompressor
-
- TIFFDeflateDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFDeflateDecompressor(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor
-
- TIFFDeflater - Class in com.sun.media.imageioimpl.plugins.tiff
-
Compressor superclass for Deflate and ZLib compression.
- TIFFDeflater(String, int, ImageWriteParam, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFDeflater
-
- TiffDelegateReader - Class in loci.formats.in
-
TiffDelegateReader is a file format reader for TIFF files.
- TiffDelegateReader() - Constructor for class loci.formats.in.TiffDelegateReader
-
Constructs a new TIFF reader.
- TiffDelegateWidgets - Class in loci.plugins.config
-
Custom widgets for configuring Bio-Formats TIFF support.
- TiffDelegateWidgets() - Constructor for class loci.plugins.config.TiffDelegateWidgets
-
- TIFFDirectory - Class in com.sun.media.imageio.plugins.tiff
-
A convenience class for simplifying interaction with TIFF native
image metadata.
- TIFFDirectory(TIFFTagSet[], TIFFTag) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFDirectory
-
Constructs a
TIFFDirectory which is aware of a given
group of TIFFTagSets.
- TIFFElementInfo - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFElementInfo(String[], String[], int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFElementInfo
-
- TIFFEXIFJPEGCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
A
TIFFCompressor for the JPEG variant of EXIF.
- TIFFEXIFJPEGCompressor(ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFEXIFJPEGCompressor
-
- TIFFFaxCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFFaxCompressor(String, int, boolean) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Constructor.
- TIFFFaxDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFFaxDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- TIFFField - Class in com.sun.media.imageio.plugins.tiff
-
A class representing a field in a TIFF 6.0 Image File Directory.
- TIFFField() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField
-
The default constructor.
- TIFFField(TIFFTag, int, int, Object) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField
-
Constructs a
TIFFField with arbitrary data.
- TIFFField(TIFFTag, int, int) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField
-
Constructs a data array using
createArrayForType()TIFFField.TIFFField(TIFFTag,int,int,Object) with the supplied
parameters and the created array.
- TIFFField(TIFFTag, int) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFField
-
Constructs a
TIFFField with a single integral value.
- TIFFFieldNode - Class in com.sun.media.imageioimpl.plugins.tiff
-
The
Node representation of a TIFFField
wherein the child node is procedural rather than buffered.
- TIFFFieldNode(TIFFField) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFFieldNode
-
- tiffFiles - Variable in class loci.formats.in.APLReader
-
- tiffFudge_ - Variable in class com.sun.media.imageioimpl.common.LZWCompressor
-
modify the limits of the code values in LZW encoding due to TIFF bug / feature
- TIFFIFD - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFIFD(List, TIFFTag) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- TIFFIFD(List) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- TiffIFDEntry - Class in loci.formats.tiff
-
This class represents a single raw TIFF IFD entry.
- TiffIFDEntry(int, IFDType, int, long) - Constructor for class loci.formats.tiff.TiffIFDEntry
-
- TIFFImageMetadata - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFImageMetadata(List) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- TIFFImageMetadata(TIFFIFD) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadata
-
- TIFFImageMetadataFormat - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFImageMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormat
-
- TIFFImageMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFImageMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageMetadataFormatResources
-
- TIFFImageReader - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- TIFFImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- TIFFImageReadParam - Class in com.sun.media.imageio.plugins.tiff
-
A subclass of
ImageReadParam allowing control over
the TIFF reading process.
- TIFFImageReadParam() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFImageReadParam
-
Constructs a
TIFFImageReadParam.
- TIFFImageWriteParam - Class in com.sun.media.imageio.plugins.tiff
-
A subclass of
ImageWriteParam
- TIFFImageWriteParam(Locale) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
Constructs a
TIFFImageWriteParam instance
for a given Locale.
- TIFFImageWriter - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- TIFFImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- tiffInfo - Variable in class loci.formats.in.ZeissTIFFReader
-
- TIFFInfo() - Constructor for class loci.formats.in.ZeissTIFFReader.TIFFInfo
-
- TiffJAIReader - Class in loci.formats.in
-
TiffJAIReader is a file format reader for TIFF images.
- TiffJAIReader() - Constructor for class loci.formats.in.TiffJAIReader
-
Constructs a new TIFF reader that uses Java Image I/O.
- TIFFJPEGCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
Compressor for encoding compression type 7, TTN2/Adobe JPEG-in-TIFF.
- TIFFJPEGCompressor(ImageWriteParam) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGCompressor
-
- TIFFJPEGCompressor.JPEGSPIFilter - Class in com.sun.media.imageioimpl.plugins.tiff
-
A filter which identifies the ImageReaderSpi of a JPEG reader
which supports JPEG native stream metadata.
- TIFFJPEGDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFJPEGDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFJPEGDecompressor
-
- TIFFLSBCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
Uncompressed data with LSB-to-MSB fill order.
- TIFFLSBCompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBCompressor
-
- TIFFLSBDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFLSBDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLSBDecompressor
-
- TIFFLZWCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
LZW Compressor.
- TIFFLZWCompressor(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWCompressor
-
- TIFFLZWDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFLZWDecompressor(int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
- TIFFLZWUtil - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFLZWUtil() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
- TIFFMetadataFormat - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFMetadataFormat
-
- TIFFNullCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFNullCompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFNullCompressor
-
- TIFFNullDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFNullDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFNullDecompressor
-
- TIFFOldJPEGDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
TIFFDecompressor for "Old JPEG" compression.
- TIFFOldJPEGDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFOldJPEGDecompressor
-
- TIFFPackBitsCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFPackBitsCompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsCompressor
-
- TIFFPackBitsDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFPackBitsDecompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsDecompressor
-
- TIFFPackBitsUtil - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFPackBitsUtil() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFPackBitsUtil
-
- tiffParser - Variable in class loci.formats.in.FlowSightReader
-
- tiffParser - Variable in class loci.formats.in.MinimalTiffReader
-
- tiffParser - Variable in class loci.formats.in.TCSReader
-
- tiffParser - Variable in class loci.formats.in.ZeissLSMReader
-
- TiffParser - Class in loci.formats.tiff
-
Parses TIFF data from an input source.
- TiffParser(String) - Constructor for class loci.formats.tiff.TiffParser
-
Constructs a new TIFF parser from the given file name.
- TiffParser(RandomAccessInputStream) - Constructor for class loci.formats.tiff.TiffParser
-
Constructs a new TIFF parser from the given input source.
- TiffRational - Class in loci.formats.tiff
-
A rational number (numerator over denominator).
- TiffRational(long, long) - Constructor for class loci.formats.tiff.TiffRational
-
Constructs a rational number.
- tiffReader - Variable in class loci.formats.in.InCellReader
-
- tiffReader - Variable in class loci.formats.in.MicromanagerReader
-
Helper reader for TIFF files.
- TiffReader - Class in loci.formats.in
-
TiffReader is the file format reader for regular TIFF files,
not of any specific TIFF variant.
- TiffReader() - Constructor for class loci.formats.in.TiffReader
-
Constructs a new Tiff reader.
- tiffReader - Variable in class loci.formats.in.ZeissTIFFReader
-
Helper reader for TIFF files.
- tiffReaders - Variable in class loci.formats.in.TCSReader
-
Helper readers.
- TIFFRenderedImage - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFRenderedImage(TIFFImageReader, int, ImageReadParam, int, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- TIFFRLECompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFRLECompressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFRLECompressor
-
- tiffs - Variable in class loci.formats.in.BDReader
-
- tiffs - Variable in class loci.formats.in.FV1000Reader
-
Names of every TIFF file to open.
- tiffs - Variable in class loci.formats.in.L2DReader
-
List of constituent TIFF files.
- tiffs - Variable in class loci.formats.in.MIASReader
-
TIFF files - indexed by well and file.
- tiffs - Variable in class loci.formats.in.MicromanagerReader.Position
-
- tiffs - Variable in class loci.formats.in.ScanrReader
-
- tiffs - Variable in class loci.formats.in.TCSReader
-
List of TIFF files.
- tiffSaver - Variable in class loci.formats.out.TiffWriter
-
The TiffSaver that will do most of the writing.
- TiffSaver - Class in loci.formats.tiff
-
Parses TIFF data from an input source.
- TiffSaver(String) - Constructor for class loci.formats.tiff.TiffSaver
-
Constructs a new TIFF saver from the given filename.
- TiffSaver(RandomAccessOutputStream, String) - Constructor for class loci.formats.tiff.TiffSaver
-
Constructs a new TIFF saver from the given output source.
- TiffSaver(RandomAccessOutputStream, ByteArrayHandle) - Constructor for class loci.formats.tiff.TiffSaver
-
Constructs a new TIFF saver from the given output source.
- TIFFStreamMetadata - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFStreamMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadata
-
- TIFFStreamMetadataFormat - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFStreamMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormat
-
- TIFFStreamMetadataFormatResources - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFStreamMetadataFormatResources() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFStreamMetadataFormatResources
-
- TIFFT4Compressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFT4Compressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFT4Compressor
-
- TIFFT6Compressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFT6Compressor() - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFT6Compressor
-
- TIFFTag - Class in com.sun.media.imageio.plugins.tiff
-
A class defining the notion of a TIFF tag.
- TIFFTag(String, int, int, TIFFTagSet) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Constructs a
TIFFTag with a given name, tag number, set
of legal data types, and TIFFTagSet to which it refers.
- TIFFTag(String, int, int) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTag
-
Constructs a
TIFFTag with a given name, tag
number, and set of legal data types.
- TIFFTagSet - Class in com.sun.media.imageio.plugins.tiff
-
A class representing a set of TIFF tags.
- TIFFTagSet() - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
Constructs a TIFFTagSet.
- TIFFTagSet(List) - Constructor for class com.sun.media.imageio.plugins.tiff.TIFFTagSet
-
Constructs a
TIFFTagSet, given a List
of TIFFTag objects.
- TiffWriter - Class in loci.formats.out
-
TiffWriter is the file format writer for TIFF files.
- TiffWriter() - Constructor for class loci.formats.out.TiffWriter
-
- TiffWriter(String, String[]) - Constructor for class loci.formats.out.TiffWriter
-
- TIFFYCbCrColorConverter - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFYCbCrColorConverter(TIFFImageMetadata) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- TIFFYCbCrDecompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
- TIFFYCbCrDecompressor(TIFFDecompressor, boolean) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- TIFFZLibCompressor - Class in com.sun.media.imageioimpl.plugins.tiff
-
Compressor for ZLib compression.
- TIFFZLibCompressor(ImageWriteParam, int) - Constructor for class com.sun.media.imageioimpl.plugins.tiff.TIFFZLibCompressor
-
- TILE_BYTE_COUNTS - Static variable in class loci.formats.tiff.IFD
-
- TILE_GRANULARITY - Static variable in class loci.formats.out.TiffWriter
-
TIFF tiles must be of a height and width divisible by 16.
- TILE_LENGTH - Static variable in class loci.formats.tiff.IFD
-
- TILE_NUM - Static variable in class loci.formats.FormatTools
-
- TILE_OFFSETS - Static variable in class loci.formats.tiff.IFD
-
- TILE_ORIGIN - Static variable in class loci.formats.in.CellSensReader
-
- TILE_RESET - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
The reset mask for new tiles
- TILE_SYSTEM - Static variable in class loci.formats.in.CellSensReader
-
- TILE_WIDTH - Static variable in class loci.formats.tiff.IFD
-
- TILE_X - Static variable in class loci.formats.FormatTools
-
- TILE_Y - Static variable in class loci.formats.FormatTools
-
- TileByteCounts() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileByteCounts
-
- tileBytesInc - Variable in class loci.formats.in.LIFReader
-
- TileCache(int, int) - Constructor for class loci.formats.codec.JPEGTileDecoder.TileCache
-
- tileChanged() - Method in class jj2000.j2k.roi.encoder.ROIMaskGenerator
-
This function is called every time the tile is changed to indicate
that there is need to make a new mask
- tileCols - Variable in class loci.formats.in.MIASReader
-
- tileCompVal - Variable in class jj2000.j2k.ModuleSpec
-
The specific value for each tile-component.
- TileConsumer(ImageProducer) - Constructor for class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- TileConsumer(ImageProducer, int, int) - Constructor for class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- TileCoordinate(int) - Constructor for class loci.formats.in.CellSensReader.TileCoordinate
-
- TileCoordinate() - Constructor for class loci.formats.TileStitcher.TileCoordinate
-
- tileCount - Variable in class loci.formats.in.ImspectorReader
-
The number of mosaic tiles stored in the file.
- tileCount - Variable in class loci.formats.in.LIFReader
-
- tileDataSize - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
cache the size of the data for each tile in the stream.
- tileDef - Variable in class jj2000.j2k.ModuleSpec
-
The default value for each tile.
- tileDim - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- tileFiles - Variable in class loci.formats.in.HamamatsuVMSReader
-
- tileGridXOffset - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The X coordinate of the upper-left pixel of tile (0, 0).
- tileGridXOffset - Variable in class loci.formats.codec.CodecOptions
-
Horizontal offset of the tile grid as it would be provided to:
ImageWriteParam.setTiling(int, int, int, int)
(WRITE).
- tileGridYOffset - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The Y coordinate of the upper-left pixel of tile (0, 0).
- tileGridYOffset - Variable in class loci.formats.codec.CodecOptions
-
Vertical offset of the tile grid as it would be provided to:
ImageWriteParam.setTiling(int, int, int, int)
(WRITE).
- tileH - Variable in class jj2000.j2k.image.Tiler
-
The height of the current tile, on the reference grid.
- tileHeaders - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Buffers containing the original tile headers
- tileHeight - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The height of a tile.
- tileHeight - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- tileHeight - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The tile height for encoding
- tileHeight - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The tile height for encoding
- tileHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- tileHeight - Variable in class loci.formats.codec.CodecOptions
-
Tile height as it would be provided to:
ImageWriteParam.setTiling(int, int, int, int)
(WRITE).
- tileHeight - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- tileHeight - Variable in class loci.formats.in.L2DReader
-
- tileHeight - Variable in class loci.formats.in.LeicaReader
-
- tileHeight - Variable in class loci.formats.in.MIASReader
-
- tileHeight - Variable in class loci.formats.in.OMETiffReader
-
- tileHeight - Variable in class loci.formats.in.ScanrReader
-
- tileHeight - Variable in class loci.formats.in.ZeissCZIReader
-
- tileIdx - Variable in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Index of the current tile
- tileIndices - Variable in class loci.formats.in.BaseZeissReader
-
- TileJPEGReader - Class in loci.formats.in
-
Reader for decoding JPEG images using java.awt.Toolkit.
- TileJPEGReader() - Constructor for class loci.formats.in.TileJPEGReader
-
- TileLength() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileLength
-
- tileLength - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- tileMap - Variable in class loci.formats.in.CellSensReader
-
- tileMap - Variable in class loci.formats.TileStitcher
-
- tileMaskMade - Variable in class jj2000.j2k.roi.encoder.ROIMaskGenerator
-
Flag indicating whether a mask has been made for the current tile
- TileOffsets() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileOffsets
-
- tileOffsets - Variable in class loci.formats.in.CellSensReader
-
- tileOfTileParts - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Vector containing info as to which tile each tilepart belong
- tileOrStripHeight - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- tileOrStripWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- tileParam - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- tilePartHeadLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Length of all tile-part headers
- tilePartLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Length of each tile-part (written in Psot)
- tilePartNum - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
The number of the tile-part in the codestream
- tilePartPkdPktHeaders - Variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Array containing the Ippm fields of the PPT marker segments
- tilePartPositions - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- tileParts - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
The number of tile-parts in each tile
- tileParts - Variable in class jj2000.j2k.util.CodestreamManipulator
-
Buffers containing the tile parts
- tilePartsRead - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
The number of tile-parts read so far for each tile
- tilePartStart - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- tiler - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Reference to the tiler module
- Tiler - Class in jj2000.j2k.image
-
This class places an image in the canvas coordinate system, tiles it, if so
specified, and performs the coordinate conversions transparently.
- Tiler(BlkImgDataSrc, int, int, int, int, int, int) - Constructor for class jj2000.j2k.image.Tiler
-
Constructs a new tiler with the specified 'BlkImgDataSrc' source,
image origin, tiling origin and nominal tile size.
- tileRows - Variable in class loci.formats.in.MIASReader
-
- tiles - Variable in class loci.formats.codec.JPEGTileDecoder
-
- tiles - Variable in class loci.formats.in.BaseZeissReader
-
- tilesAcross - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- tilesAcross - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- tilesDown - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- tilesDown - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- tileSizeX - Variable in class loci.formats.out.TiffWriter
-
The tile width which will be used for writing.
- tileSizeY - Variable in class loci.formats.out.TiffWriter
-
The tile height which will be used for writing.
- tileStepX - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Tile step sizes.
- tileStepY - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Tile step sizes.
- TileStitcher - Class in loci.formats
-
- TileStitcher() - Constructor for class loci.formats.TileStitcher
-
Constructs a TileStitcher around a new image reader.
- TileStitcher(IFormatReader) - Constructor for class loci.formats.TileStitcher
-
Constructs a TileStitcher with the given reader.
- tileStitcher - Variable in class loci.plugins.in.ImportProcess
-
- TileStitcher.TileCoordinate - Class in loci.formats
-
- tileW - Variable in class jj2000.j2k.image.Tiler
-
The width of the current tile, on the reference grid.
- TileWidth() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TileWidth
-
- tileWidth - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The width of a tile.
- tileWidth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- tileWidth - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The tile width for encoding
- tileWidth - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The tile width for encoding
- tileWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- tileWidth - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- tileWidth - Variable in class loci.formats.codec.CodecOptions
-
Tile width as it would be provided to:
ImageWriteParam.setTiling(int, int, int, int)
(WRITE).
- tileWidth - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- tileWidth - Variable in class loci.formats.in.L2DReader
-
- tileWidth - Variable in class loci.formats.in.LeicaReader
-
- tileWidth - Variable in class loci.formats.in.MIASReader
-
- tileWidth - Variable in class loci.formats.in.OMETiffReader
-
- tileWidth - Variable in class loci.formats.in.ScanrReader
-
- tileWidth - Variable in class loci.formats.in.ZeissCZIReader
-
- tileX - Variable in class loci.formats.in.CellSensReader
-
- tileX - Variable in class loci.formats.TileStitcher
-
- tileXOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Tile grid offsets of the source, also used for destination.
- tileXOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The tile grid offset for encoding
- tileXOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The tile grid offset for encoding
- tileXToX(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a horizontal tile index into the X coordinate of its
upper left pixel relative to a given tile grid layout specified
by its X offset and tile width.
- tileXToX(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a horizontal tile index into the X coordinate of its
upper left pixel.
- tileY - Variable in class loci.formats.in.CellSensReader
-
- tileY - Variable in class loci.formats.TileStitcher
-
- tileYOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Tile grid offsets of the source, also used for destination.
- tileYOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The tile grid offset for encoding
- tileYOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The tile grid offset for encoding
- tileYToY(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a vertical tile index into the Y coordinate of
its upper left pixel relative to a given tile grid layout
specified by its Y offset and tile height.
- tileYToY(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a vertical tile index into the Y coordinate of its
upper left pixel.
- TillVisionReader - Class in loci.formats.in
-
TillVisionReader is the file format reader for TillVision files.
- TillVisionReader() - Constructor for class loci.formats.in.TillVisionReader
-
Constructs a new TillVision reader.
- TIM_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- time - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The cumulative wall time for the entropy coding engine, for each
component.
- time - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The cumulative wall time for this compressor, for each
component.
- time - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The cumulative wall time for the entropy coding engine, for each
component.
- time - Variable in class loci.formats.in.DicomReader
-
- time - Variable in class loci.formats.in.MicromanagerReader.Position
-
- time - Variable in class loci.formats.in.SDTInfo
-
Time of creation.
- time - Variable in class loci.formats.in.SVSReader
-
- time - Variable in class loci.plugins.in.ImagePlusReader
-
- TIME_FORMAT - Static variable in class loci.formats.in.GelReader
-
- TIME_INCREMENT - Static variable in class loci.formats.in.CellSensReader
-
- TIME_OFFSET - Static variable in class loci.formats.in.TextReader
-
How often to report progress during initialization, in milliseconds.
- TIME_SCALE - Static variable in class loci.formats.out.LegacyQTWriter
-
Time scale.
- TIME_START - Static variable in class loci.formats.in.CellSensReader
-
- TIME_VALUE - Static variable in class loci.formats.in.CellSensReader
-
- timeBins - Variable in class loci.formats.in.PQBinReader
-
- timeBins - Variable in class loci.formats.in.SDTInfo
-
- timeBins - Variable in class loci.formats.in.SDTReader
-
Number of time bins in lifetime histogram.
- timeIncrement - Variable in class loci.formats.in.FEITiffReader
-
- timeIncrement - Variable in class loci.formats.in.IPLabReader
-
- timeIncrement - Variable in class loci.formats.in.TiffReader
-
- timeIncrement - Variable in class loci.formats.in.ZeissCZIReader
-
- timeIncrement - Variable in class loci.formats.in.ZeissLSMReader.Track
-
- timeIndex - Variable in class loci.formats.in.FluoviewReader
-
- TIMEINFO - Static variable in class loci.formats.in.LeicaReader
-
- timepoint - Variable in class loci.formats.in.BaseZeissReader
-
- timepoint - Variable in class loci.formats.in.ColumbusReader.Plane
-
- timepoint - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- Timepoint(int) - Constructor for class loci.formats.in.ZeissTIFFReader.Timepoint
-
- timepointIndices - Variable in class loci.formats.in.BaseZeissReader
-
- timePoints - Variable in class loci.formats.in.CellVoyagerReader
-
- timepoints - Variable in class loci.formats.in.SDTInfo
-
- timepoints - Variable in class loci.formats.in.ZeissTIFFReader
-
- Timer() - Constructor for class loci.formats.in.ZeissLSMReader.Timer
-
- times - Variable in class loci.formats.in.CellH5Reader
-
- times - Variable in class loci.formats.in.LegacyQTReader
-
Time offset for each frame.
- TIMESTAMP - Static variable in class loci.formats.FormatTools
-
- TIMESTAMP - Static variable in class loci.formats.in.CellSensReader
-
- timestamp - Variable in class loci.formats.in.GatanReader
-
- timestamp - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- timestamp - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- timestamp - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- TIMESTAMP_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- timestampFile - Variable in class loci.formats.in.VolocityReader.Stack
-
- timestamps - Variable in class loci.formats.in.BaseZeissReader
-
- timestamps - Variable in class loci.formats.in.CellWorxReader
-
- timestamps - Variable in class loci.formats.in.LeicaReader
-
- timestamps - Variable in class loci.formats.in.LiFlimReader
-
- timestamps - Variable in class loci.formats.in.LIFReader
-
- timestamps - Variable in class loci.formats.in.MetamorphHandler
-
- timestamps - Variable in class loci.formats.in.MicromanagerReader.Position
-
- timestamps - Variable in class loci.formats.in.PCIReader
-
- timestamps - Variable in class loci.formats.in.VolocityReader
-
- timestamps - Variable in class loci.formats.in.ZeissCZIReader
-
- timestamps - Variable in class loci.formats.in.ZeissLSMReader
-
- timeStampSeconds - Variable in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
Time stamp in seconds since the experiment began.
- timeUnit - Variable in class loci.formats.in.NiftiReader
-
- TITAN_TAG - Static variable in class loci.formats.in.FEITiffReader
-
- TITLE - Static variable in class loci.formats.gui.DataConverter
-
- TITLE - Static variable in class loci.formats.gui.ImageViewer
-
- TITLE - Static variable in class loci.formats.tools.EditTiffG
-
- TJ - Class in org.libjpegturbo.turbojpeg
-
TurboJPEG utility class (cannot be instantiated)
- TJ() - Constructor for class org.libjpegturbo.turbojpeg.TJ
-
- TJCompressor - Class in org.libjpegturbo.turbojpeg
-
TurboJPEG compressor
- TJCompressor() - Constructor for class org.libjpegturbo.turbojpeg.TJCompressor
-
Create a TurboJPEG compressor instance.
- TJCompressor(byte[], int, int, int, int) - Constructor for class org.libjpegturbo.turbojpeg.TJCompressor
-
Create a TurboJPEG compressor instance and associate the uncompressed
source image stored in
srcImage with the newly-created
instance.
- TJCustomFilter - Interface in org.libjpegturbo.turbojpeg
-
Custom filter callback interface
- TJDecompressor - Class in org.libjpegturbo.turbojpeg
-
TurboJPEG decompressor
- TJDecompressor() - Constructor for class org.libjpegturbo.turbojpeg.TJDecompressor
-
Create a TurboJPEG decompresssor instance.
- TJDecompressor(byte[]) - Constructor for class org.libjpegturbo.turbojpeg.TJDecompressor
-
Create a TurboJPEG decompressor instance and associate the JPEG image
stored in
jpegImage with the newly-created instance.
- TJDecompressor(byte[], int) - Constructor for class org.libjpegturbo.turbojpeg.TJDecompressor
-
Create a TurboJPEG decompressor instance and associate the JPEG image
of length
imageSize bytes stored in jpegImage
with the newly-created instance.
- TJLoader - Class in org.libjpegturbo.turbojpeg
-
- TJLoader() - Constructor for class org.libjpegturbo.turbojpeg.TJLoader
-
- TJScalingFactor - Class in org.libjpegturbo.turbojpeg
-
Fractional scaling factor
- TJScalingFactor(int, int) - Constructor for class org.libjpegturbo.turbojpeg.TJScalingFactor
-
- TJTransform - Class in org.libjpegturbo.turbojpeg
-
Lossless transform parameters
- TJTransform() - Constructor for class org.libjpegturbo.turbojpeg.TJTransform
-
Create a new lossless transform instance.
- TJTransform(int, int, int, int, int, int, TJCustomFilter) - Constructor for class org.libjpegturbo.turbojpeg.TJTransform
-
Create a new lossless transform instance with the given parameters.
- TJTransform(Rectangle, int, int, TJCustomFilter) - Constructor for class org.libjpegturbo.turbojpeg.TJTransform
-
Create a new lossless transform instance with the given parameters.
- TJTransformer - Class in org.libjpegturbo.turbojpeg
-
TurboJPEG lossless transformer
- TJTransformer() - Constructor for class org.libjpegturbo.turbojpeg.TJTransformer
-
Create a TurboJPEG lossless transformer instance.
- TJTransformer(byte[]) - Constructor for class org.libjpegturbo.turbojpeg.TJTransformer
-
Create a TurboJPEG lossless transformer instance and associate the JPEG
image stored in
jpegImage with the newly-created instance.
- TJTransformer(byte[], int) - Constructor for class org.libjpegturbo.turbojpeg.TJTransformer
-
Create a TurboJPEG lossless transformer instance and associate the JPEG
image of length
imageSize bytes stored in
jpegImage with the newly-created instance.
- tLabel - Variable in class loci.formats.gui.DataConverter
-
- TLM - Static variable in interface jj2000.j2k.codestream.Markers
-
Tile-part lengths (TLM): 0xFF55
- TLM_FOUND - Static variable in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Flag bit for TLM marker segment found
- TM - Static variable in class loci.formats.in.DicomReader
-
- tmpImage - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- tmpLetter - Variable in class loci.formats.ResourceNamer
-
- tnbytes - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Number of bytes targeted to be read
- tnsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
-
- toArray() - Method in class loci.formats.tiff.OnDemandLongArray
-
- toByteArray(byte[]) - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Returns the byte buffer data in a new array.
- toByteArray(int, int, byte[], int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Copies the specified part of the stream to the 'outbuf' byte
array.
- toByteArray() - Method in class loci.formats.codec.BitWriter
-
Deprecated.
Gets an array containing all bits written thus far.
- toByteArray() - Method in class loci.formats.codec.ByteVector
-
- toBytes(BufferedImage, IFormatWriter) - Static method in class loci.formats.gui.BufferedImageWriter
-
- toCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace
-
- toCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
-
- toCIEXYZ(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
-
- toCIEXYZ(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace
-
- toCompress - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- toFloat(int, FloatProcessor) - Method in class loci.plugins.util.RecordedImageProcessor
-
- toggleAnimation() - Method in class loci.plugins.util.DataBrowser
-
Toggles whether the data browser is animating.
- toISO8859(byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- token - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
- token(String, String, int) - Method in class loci.formats.in.PrairieMetadata
-
Gets the
ith token of the given string, split according to the
specific regular expression.
- TOKEN_SEPARATOR - Static variable in class loci.formats.in.FakeReader
-
- tokenize(String) - Method in class loci.formats.in.ICSReader
-
- toLength(Double, boolean) - Method in class loci.formats.in.PrairieMetadata.Frame
-
Convert a position number to a length in the microscope reference frame.
- TONE_COMPENSATION - Static variable in class loci.formats.in.NikonReader
-
- TOO_MANY_TRIES - Static variable in class loci.plugins.util.LuraWave
-
- tools - Variable in class loci.formats.in.LegacyQTReader
-
Instance of LegacyQTTools to handle QuickTime for Java detection.
- tools - Variable in class loci.formats.out.LegacyQTWriter
-
Instance of LegacyQTTools to handle QuickTime for Java detection.
- TOOLS - Static variable in class loci.formats.UpgradeChecker
-
Name of the ueber tools JAR.
- toOMExmlColor(Color) - Static method in class loci.plugins.util.ROIHandler
-
Converts the Java Color into an OME-XML Color.
- TOP_LEVEL_KEYS - Static variable in class loci.formats.in.NikonTiffReader
-
- topDown - Variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
- TopometrixReader - Class in loci.formats.in
-
TopometrixReader is the file format reader for TopoMetrix .tfr, .ffr,
.zfr, .zfp, and .2fl files.
- TopometrixReader() - Constructor for class loci.formats.in.TopometrixReader
-
Constructs a new TopoMetrix reader.
- toPrimitiveArray(List<Long>) - Method in class loci.formats.tiff.TiffSaver
-
Coverts a list to a primitive array.
- toRGB(float, float, float, float[]) - Method in class com.sun.media.imageio.plugins.tiff.TIFFColorConverter
-
Converts a triple in the native color space of this
TIFFColorConverter into an RGB triple, and stores the result in
the first three entries of the
rgb array.
- toRGB(float[]) - Method in class com.sun.media.imageioimpl.common.BogusColorSpace
-
- toRGB(float[]) - Method in class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace
-
- toRGB(float[]) - Method in class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace
-
- toRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- toRGB(float, float, float, float[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrColorConverter
-
- toRGB(float[]) - Method in class loci.formats.gui.TwoChannelColorSpace
-
- toString() - Method in class jj2000.j2k.codestream.CBlkCoordInfo
-
Returns code-block's information in a String
- toString() - Method in class jj2000.j2k.codestream.CoordInfo
-
Returns object's information in a String
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.COC
-
Display information found in this COC marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.COD
-
Display information found in this COD marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.COM
-
Display information found in the COM marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.CRG
-
Display information found in the CRG marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.POC
-
Display information found in this POC marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.QCC
-
Display information found in this QCC marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.QCD
-
Display information found in this QCD marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.RGN
-
Display information found in this RGN marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
Display information found in SIZ marker segment
- toString() - Method in class jj2000.j2k.codestream.HeaderInfo.SOT
-
Display information found in this SOT marker segment
- toString() - Method in class jj2000.j2k.codestream.PrecCoordInfo
-
Returns precinct's information in a String
- toString() - Method in class jj2000.j2k.codestream.PrecInfo
-
Returns PrecInfo object information in a String
- toString() - Method in class jj2000.j2k.codestream.reader.CBlkInfo
-
Object information in a string.
- toString() - Method in class jj2000.j2k.codestream.reader.HeaderDecoder
-
Print information about the current header.
- toString() - Method in class jj2000.j2k.codestream.reader.PktInfo
-
Object information in a string.
- toString() - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Prints information about this object for debugging purposes
- toString() - Method in class jj2000.j2k.entropy.CodedCBlk
-
Returns the contents of the object in a string.
- toString() - Method in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
-
Object information in a string
- toString() - Method in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
Returns the contents of the object in a string.
- toString() - Method in class jj2000.j2k.entropy.Progression
-
- toString() - Method in class jj2000.j2k.image.DataBlk
-
Returns a string of informations about the DataBlk
- toString() - Method in class jj2000.j2k.image.DataBlkFloat
-
Returns a string of informations about the DataBlkInt.
- toString() - Method in class jj2000.j2k.image.DataBlkInt
-
Returns a string of informations about the DataBlkInt.
- toString() - Method in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
Returns a string with a descriptive text of which forward component
transformation is used.
- toString() - Method in class jj2000.j2k.image.ImgDataJoiner
-
Returns a string of information about the object, more than 1 line
long.
- toString() - Method in class jj2000.j2k.image.input.ImgReaderPGM
-
Returns a string of information about the object, more than 1 line
long.
- toString() - Method in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
Returns a string with a descriptive text of which inverse component
transformation is used.
- toString() - Method in class jj2000.j2k.image.Tiler
-
Returns a String object representing Tiler's informations
- toString() - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Returns a string of information about the file and the endianess
- toString() - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Returns a string of information about the file
- toString() - Method in class jj2000.j2k.roi.encoder.ArbROIMaskGenerator
-
This function returns the relevant data of the mask generator
- toString() - Method in class jj2000.j2k.roi.encoder.RectROIMaskGenerator
-
This function returns the relevant data of the mask generator
- toString() - Method in class jj2000.j2k.roi.encoder.ROI
-
This function prints all relevant data for the ROI
- toString() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterFloatLift9x7
-
Debugging method
- toString() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterIntLift5x3
-
Debugging method
- toString() - Method in class jj2000.j2k.wavelet.analysis.AnWTFilterSpec
-
Debugging method
- toString() - Method in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
Returns a string of informations about the DataBlk
- toString() - Method in class jj2000.j2k.wavelet.Subband
-
Returns subband informations in a string.
- toString() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterFloatLift9x7
-
Returns a string of information about the synthesis wavelet filter
- toString() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterIntLift5x3
-
Returns a string of information about the synthesis wavelet filter
- toString() - Method in class jj2000.j2k.wavelet.synthesis.SynWTFilterSpec
-
Debugging method
- toString() - Method in class loci.formats.cache.CacheEvent
-
- toString() - Method in class loci.formats.CoreMetadata
-
- toString() - Method in class loci.formats.FileInfo
-
- toString() - Method in class loci.formats.gui.ComboFileFilter
-
Gets a string representation of this file filter.
- toString() - Method in class loci.formats.gui.ExtensionFileFilter
-
Gets a string representation of this file filter.
- toString() - Method in class loci.formats.gui.FormatFileFilter
-
Gets a string representation of this file filter.
- toString() - Method in class loci.formats.gui.NoExtensionFileFilter
-
Gets a string representation of this file filter.
- toString(boolean) - Method in class loci.formats.gui.XMLCellRenderer.XMLItem
-
- toString() - Method in class loci.formats.gui.XMLCellRenderer.XMLItem
-
Allows copy and paste from tree component.
- toString() - Method in class loci.formats.in.BaseZeissReader.Layer
-
- toString() - Method in class loci.formats.in.BaseZeissReader.Shape
-
- toString() - Method in class loci.formats.in.BaseZeissReader.Tag
-
- toString() - Method in class loci.formats.in.BioRadReader.Note
-
- toString() - Method in class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- toString() - Method in class loci.formats.in.CellSensReader.TileCoordinate
-
- toString() - Method in class loci.formats.in.CellVoyagerReader.AreaInfo
-
- toString() - Method in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- toString() - Method in class loci.formats.in.CellVoyagerReader.FieldInfo
-
- toString() - Method in class loci.formats.in.CellVoyagerReader.WellInfo
-
- toString() - Method in class loci.formats.in.DeltavisionReader.DVExtHdrFields
-
Helper function which overrides toString, printing out the values in
the header section.
- toString() - Method in class loci.formats.in.IM3Reader.IM3Record
-
- toString() - Method in class loci.formats.in.MicromanagerReader.Index
-
- toString() - Method in class loci.formats.in.NativeND2Reader.ChunkMapEntry
-
- toString() - Method in class loci.formats.in.PrairieMetadata.ValueItem
-
- toString() - Method in class loci.formats.in.ZeissCZIReader.AttachmentEntry
-
- toString() - Method in class loci.formats.in.ZeissCZIReader.Coordinate
-
- toString() - Method in class loci.formats.in.ZeissCZIReader.DimensionEntry
-
- toString() - Method in class loci.formats.in.ZeissCZIReader.DirectoryEntry
-
- toString() - Method in class loci.formats.in.ZeissCZIReader.SubBlock
-
- toString() - Method in class loci.formats.in.ZeissTIFFHandler.Plane
-
- toString() - Method in class loci.formats.in.ZeissTIFFHandler.Scaling
-
- toString() - Method in class loci.formats.in.ZeissTIFFHandler.Tag
-
- toString() - Method in class loci.formats.in.ZeissTIFFHandler.TagSet
-
- toString() - Method in class loci.formats.in.ZeissTIFFHandler
-
- toString() - Method in class loci.formats.in.ZeissTIFFReader.Plane
-
- toString() - Method in class loci.formats.tiff.TiffIFDEntry
-
- toString() - Method in class loci.formats.tiff.TiffRational
-
Returns a string representation of the object.
- toString() - Method in class loci.formats.tools.AmiraParameters
-
- toString(Map, String) - Static method in class loci.formats.tools.AmiraParameters
-
- toString() - Method in class loci.formats.tools.AsciiImage
-
- toString() - Method in class loci.plugins.config.FormatEntry
-
- toString() - Method in class loci.plugins.config.LibraryEntry
-
- toString() - Method in class loci.plugins.in.ImporterMetadata
-
- toString() - Method in class loci.plugins.util.RecordedImageProcessor
-
- toStringMainHeader() - Method in class jj2000.j2k.codestream.HeaderInfo
-
Display information found in the different marker segments of the main
header
- toStringThNoSOT(int, int) - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns information found in the tile-part headers of a given tile
exception the SOT marker segment.
- toStringTileHeader(int, int) - Method in class jj2000.j2k.codestream.HeaderInfo
-
Returns information found in the tile-part headers of a given tile.
- totalBlocks - Variable in class loci.formats.codec.RPZACodec
-
- totalChannels - Variable in class loci.formats.in.InCellReader
-
- totalImages - Variable in class loci.formats.in.InCellReader
-
- totalLength - Variable in class com.sun.media.imageio.stream.SectorStreamSegmentMapper
-
- totAllTileLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Total length of all tile parts in all tiles
- totalPixels - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- totalROIs - Variable in class loci.formats.in.ZeissLSMReader
-
- totbrate - Variable in class jj2000.j2k.entropy.encoder.LayersInfo
-
The overall target bitrate, for the whole bit stream
- ToTile(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
- ToTile(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- totlyrs - Variable in class jj2000.j2k.entropy.encoder.LayersInfo
-
The total number of layers
- totTileHeadLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Total length of tiles' header
- totTileLen - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Total length of each tile
- totTileParts - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
The total number of tile-parts in each tile
- totTilePartsRead - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Thetotal number of tile-parts read so far
- toXMLAnnotation() - Method in class loci.formats.Modulo
-
- tp - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- TP_HEAD_LEN - Static variable in class jj2000.j2k.util.CodestreamManipulator
-
The length of a SOT plus a SOD marker
- tPool - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The pool of threads, for the threaded implementation.
- tpsot - Variable in class jj2000.j2k.codestream.HeaderInfo.SOT
-
- tptot - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
- tQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The tile in which the ncb quit condition was reached
- Track() - Constructor for class loci.formats.in.ZeissLSMReader.Track
-
- TRACK_ACQUIRE - Static variable in class loci.formats.in.ZeissLSMReader
-
- TRACK_TIME_BETWEEN_STACKS - Static variable in class loci.formats.in.ZeissLSMReader
-
- transColor - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- TRANSFER_FUNCTION - Static variable in class loci.formats.tiff.IFD
-
- TRANSFER_RANGE - Static variable in class loci.formats.tiff.IFD
-
- TRANSFER_SYNTAX_UID - Static variable in class loci.formats.in.DicomReader
-
- TransferFunction() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferFunction
-
- TransferRange() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.TransferRange
-
- transform(byte[][], TJTransform[], int) - Method in class org.libjpegturbo.turbojpeg.TJTransformer
-
Losslessly transform the JPEG image associated with this transformer
instance into one or more JPEG images stored in the given destination
buffers.
- transform(TJTransform[], int) - Method in class org.libjpegturbo.turbojpeg.TJTransformer
-
Losslessly transform the JPEG image associated with this transformer
instance and return an array of
TJDecompressor instances, each of
which has a transformed JPEG image associated with it.
- transform(byte[], int, byte[][], TJTransform[], int) - Method in class org.libjpegturbo.turbojpeg.TJTransformer
-
- transformAcquisitionMode(String) - Method in class loci.formats.in.InveonReader
-
- transformBedControl(String) - Method in class loci.formats.in.InveonReader
-
- transformBedMotion(String) - Method in class loci.formats.in.InveonReader
-
- transformCTProjectionInterpolation(String) - Method in class loci.formats.in.InveonReader
-
- transformCTWarping(String) - Method in class loci.formats.in.InveonReader
-
- transformedSizes - Variable in class org.libjpegturbo.turbojpeg.TJTransformer
-
- transformEventType(String) - Method in class loci.formats.in.InveonReader
-
- transformFileType(String) - Method in class loci.formats.in.InveonReader
-
- transformFilter(String) - Method in class loci.formats.in.InveonReader
-
- transformGantryRotation(String) - Method in class loci.formats.in.InveonReader
-
- transformModality(String) - Method in class loci.formats.in.InveonReader
-
- transformModalityConfiguration(String) - Method in class loci.formats.in.InveonReader
-
- transformModel(String) - Method in class loci.formats.in.InveonReader
-
- transformNormalizationApplied(String) - Method in class loci.formats.in.InveonReader
-
- transformReconAlgorithm(String) - Method in class loci.formats.in.InveonReader
-
- transformRegistrationAvailable(String) - Method in class loci.formats.in.InveonReader
-
- transformRotationDirection(String) - Method in class loci.formats.in.InveonReader
-
- transformSubjectLengthUnits(String) - Method in class loci.formats.in.InveonReader
-
- transformSubjectOrientation(String) - Method in class loci.formats.in.InveonReader
-
- transformSubjectWeightUnits(String) - Method in class loci.formats.in.InveonReader
-
- transformToLatestVersion(String) - Method in interface loci.formats.services.OMEXMLService
-
Transforms the given OME-XML string to the latest supported version of
of the OME-XML schema.
- transformToLatestVersion(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- transfType - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
The type of the current component transformation JPEG 2000
part I only support NONE, FORW_RCT and FORW_ICT types
- transfType - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
The type of the current component transformation JPEG 2000
part I only support NONE, FORW_RCT and FORW_ICT types
- transIndex - Variable in class loci.formats.in.GIFReader
-
Transparent color index.
- translate(int, int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- translateAttachmentNodes(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateDetectors(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateDisplaySettings(Element) - Method in class loci.formats.in.ZeissCZIReader
-
- translateExperiment(Element) - Method in class loci.formats.in.ZeissCZIReader
-
- translateFilterSettings(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateHardwareSettings(Element) - Method in class loci.formats.in.ZeissCZIReader
-
- translateImageNames(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateImageNodes(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateInformation(Element) - Method in class loci.formats.in.ZeissCZIReader
-
- translateLaserLines(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateLayers(Element) - Method in class loci.formats.in.ZeissCZIReader
-
- translateMetadata(Element) - Method in class loci.formats.in.LIFReader
-
- translateMetadata(String) - Method in class loci.formats.in.ZeissCZIReader
-
- translateROIs(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateScaling(Element) - Method in class loci.formats.in.ZeissCZIReader
-
- translateScannerSettings(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateSingleROIs(Element, int) - Method in class loci.formats.in.LIFReader
-
- translateSingleTimestamp(String) - Method in class loci.formats.in.LIFReader
-
- translateSingleTimestamp(Element) - Method in class loci.formats.in.LIFReader
-
- translateTimestamps(Element, int) - Method in class loci.formats.in.LIFReader
-
- transmissivity - Variable in class loci.formats.in.OIRReader.Laser
-
- transparency - Variable in class com.sun.media.imageioimpl.common.PaletteBuilder
-
- transparency - Variable in class loci.formats.in.GIFReader
-
Use transparent color.
- TRANSPARENCY_ID - Static variable in class loci.formats.in.CellSensReader
-
- TRANSPARENCY_VALUE - Static variable in class loci.formats.in.CellSensReader
-
- transparentColorFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- transparentColorIndex - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- transX - Variable in class loci.formats.in.LeicaHandler.ROI
-
- transX - Variable in class loci.formats.in.LIFReader.ROI
-
- transY - Variable in class loci.formats.in.LeicaHandler.ROI
-
- transY - Variable in class loci.formats.in.LIFReader.ROI
-
- trate - Variable in class jj2000.j2k.codestream.reader.BitstreamReaderAgent
-
Target decoding rate in bpp
- treeS - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder
-
The tag tree state.
- treeS - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
The tag tree state.
- treeSbak - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
The saved tag tree state.
- treeV - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder
-
The tag tree values.
- treeV - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
The tag tree values.
- treeVbak - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
The saved tag tree values.
- TrestleReader - Class in loci.formats.in
-
TrestleReader is the file format reader for Trestle slide datasets.
- TrestleReader() - Constructor for class loci.formats.in.TrestleReader
-
Constructs a new Trestle reader.
- trigger - Variable in class loci.formats.in.SDTInfo
-
- TRUE_ALPHA - Static variable in class loci.formats.in.APNGReader
-
- TRUE_COLOR - Static variable in class loci.formats.in.APNGReader
-
- trueSizeX - Variable in class loci.formats.in.NativeND2Reader
-
- trueSizeY - Variable in class loci.formats.in.NativeND2Reader
-
- trueSizeZ - Variable in class loci.formats.in.NativeND2Reader
-
- truncatedFileFlag - Variable in class loci.formats.in.DeltavisionReader
-
- truncDists - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
The distortion for each truncation point (valid and non-valid ones)
- truncIdxs - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
The indices of the valid truncation points, in increasing
order.
- truncIdxs - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
6D Array containing the indices of the truncation points.
- truncRates - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
The rate (in bytes) for each truncation point (valid and non-valid
ones)
- truncSlopes - Variable in class jj2000.j2k.entropy.encoder.CBlkRateDistStats
-
The negative of the rate-distortion slope for each valid truncation
point
- TRUNK - Static variable in class loci.plugins.Updater
-
- TRUNK_BUILD - Static variable in class loci.formats.UpgradeChecker
-
Location of the JAR artifacts for Bio-Formats' trunk build.
- ts - Variable in class loci.formats.in.ND2Handler
-
- tScroll - Variable in class loci.plugins.util.DataBrowser
-
- tSize - Variable in class loci.formats.in.DeltavisionReader
-
Size of one time element in the extended header.
- tsLengths - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
-
The length of each terminated segment.
- tSlider - Variable in class loci.formats.gui.ImageViewer
-
- tsT - Variable in class loci.formats.in.NativeND2Reader
-
- tStep - Variable in class loci.plugins.in.ImporterOptions
-
- tSteps - Variable in class loci.formats.in.LIFReader
-
- Tstore - Variable in class loci.formats.in.SPCReader
-
- tstoreb - Variable in class loci.formats.in.SPCReader
-
- ttIncl - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Tag tree used to read inclusion informations in packet's head:
1st dim: component index.
2nd dim: resolution level index.
3rd dim: precinct index.
4th dim: subband index.
- ttIncl - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The tag tree for inclusion information.
- ttMaxBP - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
Tag tree used to read bit-depth information in packet's head:
1st dim: component index.
2nd dim: resolution level index.
3rd dim: precinct index.
4th dim: subband index.
- ttMaxBP - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The tag tree for the maximum significant bit-plane.
- tts - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The termination type specifications
- ttype - Variable in class jj2000.j2k.entropy.encoder.MQCoder
-
The termination type to use.
- tType - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder.Compressor
-
The MQ termination type to use in compression
- tType - Variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The termination type for each tile-component
- TWO - Static variable in class loci.formats.AxisGuesser
-
- twoBitBlack - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- TwoChannelColorSpace - Class in loci.formats.gui
-
ColorSpace for 2-channel images.
- TwoChannelColorSpace(int, int) - Constructor for class loci.formats.gui.TwoChannelColorSpace
-
- twoDCodes - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- tx - Variable in class jj2000.j2k.image.Tiler
-
The horizontal index of the current tile
- ty - Variable in class jj2000.j2k.image.Tiler
-
The vertical index of the current tile
- type - Variable in class com.sun.media.imageio.plugins.tiff.TIFFField
-
The tag type.
- type - Variable in class com.sun.media.imageio.stream.RawImageInputStream
-
The image type for all the images in the stream.
- type - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
- type - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ComponentMappingBox
-
- type - Variable in class jj2000.j2k.entropy.Progression
-
Progression type as defined in ProgressionType interface
- type - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- type - Variable in class loci.formats.cache.CacheEvent
-
Type of cache event.
- type - Variable in class loci.formats.in.APNGReader.PNGBlock
-
- type - Variable in class loci.formats.in.AVIReader
-
- type - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- type - Variable in class loci.formats.in.BioRadReader.Note
-
- type - Variable in class loci.formats.in.IM3Reader.IM3Record
-
- type - Variable in class loci.formats.in.LeicaHandler.Detector
-
- type - Variable in class loci.formats.in.LeicaHandler.ROI
-
- type - Variable in class loci.formats.in.LIFReader.ROI
-
- type - Variable in class loci.formats.in.PrairieMetadata.Sequence
-
type attribute of this <Sequence>.
- type - Variable in enum loci.formats.in.SPEReader.SpeHeaderEntry
-
- type - Variable in class loci.formats.in.ZeissLSMReader.Laser
-
- type - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension
-
- type - Variable in class loci.formats.Modulo
-
- type - Variable in class loci.formats.tiff.TiffIFDEntry
-
The field Type.
- type - Variable in class loci.plugins.config.ConfigWindow
-
- type - Variable in class loci.plugins.config.LibraryEntry
-
- TYPE_ASCII - Static variable in class loci.formats.in.ZeissLSMReader
-
- TYPE_BOOLEAN - Static variable in class loci.formats.in.ZeissLSMReader
-
- TYPE_BOOLEAN - Static variable in class loci.plugins.prefs.OptionsList
-
String indicating option is of type boolean.
- TYPE_BYTE - Static variable in class jj2000.j2k.image.DataBlk
-
The identifier for the byte data type, as signed 8
bits.
- TYPE_DATE - Static variable in class loci.formats.in.ZeissLSMReader
-
- TYPE_FLOAT - Static variable in class jj2000.j2k.image.DataBlk
-
The identifier for the float data type
- TYPE_INT - Static variable in class jj2000.j2k.image.DataBlk
-
The identifier for the int data type, as signed 32
bits.
- TYPE_LONG - Static variable in class loci.formats.in.ZeissLSMReader
-
- TYPE_RATIONAL - Static variable in class loci.formats.in.ZeissLSMReader
-
- TYPE_SHORT - Static variable in class jj2000.j2k.image.DataBlk
-
The identifier for the short data type, as signed 16
bits.
- TYPE_STRING - Static variable in class loci.plugins.prefs.OptionsList
-
String indicating option is of type string.
- TYPE_SUBBLOCK - Static variable in class loci.formats.in.ZeissLSMReader
-
Data types.
- typeDescription - Variable in class loci.formats.Modulo
-
- typeLabel - Variable in class loci.formats.gui.PreviewPane
-
Labels containing thumbnail and dimensional information.
- typeNames - Static variable in class com.sun.media.imageio.plugins.tiff.TIFFField
-
- types - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ChannelDefinitionBox
-
- TYPES - Static variable in class loci.formats.in.DicomReader
-
- TYPES - Static variable in class loci.formats.in.MRCReader
-
- types - Variable in class loci.formats.in.TillVisionReader
-
- typeText - Variable in class loci.formats.gui.PreviewPane
-
- typeTip - Variable in class loci.formats.gui.PreviewPane
-
U
- UBMReader - Class in loci.formats.in
-
UBMReader is the file format reader for UBM .pr3 files.
- UBMReader() - Constructor for class loci.formats.in.UBMReader
-
Constructs a new UBM reader.
- UBYTE - Static variable in class loci.formats.in.GatanReader
-
- UCHAR - Static variable in class loci.formats.in.CellSensReader
-
- udata - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
- UI - Static variable in class loci.formats.in.DicomReader
-
- UIC1TAG - Static variable in class loci.formats.in.MetamorphReader
-
- UIC2TAG - Static variable in class loci.formats.in.MetamorphReader
-
- UIC3TAG - Static variable in class loci.formats.in.MetamorphReader
-
- UIC4TAG - Static variable in class loci.formats.in.MetamorphReader
-
- UID - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo
-
- UID - Variable in class loci.formats.in.CellVoyagerReader.WellInfo
-
- UINT - Static variable in class loci.formats.in.CellSensReader
-
- UINT - Static variable in class loci.formats.in.GatanReader
-
- UINT16 - Static variable in class loci.formats.FormatTools
-
Identifies the UINT16 data type used to store pixel values.
- UINT32 - Static variable in class loci.formats.FormatTools
-
Identifies the UINT32 data type used to store pixel values.
- UINT8 - Static variable in class loci.formats.FormatTools
-
Identifies the UINT8 data type used to store pixel values.
- UL - Static variable in class loci.formats.in.DicomReader
-
- ulcx - Variable in class jj2000.j2k.wavelet.Subband
-
The horizontal coordinate of the upper-left corner of the subband, with
respect to the canvas origin, in the component's grid and subband's
decomposition level.
- ulcy - Variable in class jj2000.j2k.wavelet.Subband
-
The vertical coordinate of the upper-left corner of the subband, with
respect to the canvas origin, in the component's grid and subband's
decomposition level.
- ULONG - Static variable in class loci.formats.in.CellSensReader
-
- ulx - Variable in class jj2000.j2k.codestream.CoordInfo
-
Horizontal upper left coordinate in the subband
- ulx - Variable in class jj2000.j2k.codestream.PrecInfo
-
Precinct horizontal upper-left coordinate in the corresponding
resolution level
- ulx - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
-
Upper-left x-coordinate of the code-block (relative to the
tile)
- ulx - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
-
The horizontal coordinate of the upper-left corner of the code-block
- ulx - Variable in class jj2000.j2k.image.DataBlk
-
The horizontal coordinate (in pixels) of the upper-left corner
of the block of data.
- ulx - Variable in class jj2000.j2k.roi.encoder.ROI
-
x coordinate of upper left corner of rectangular ROI
- ulx - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
-
Horizontal uper-left coordinate of the subband mask
- ulx - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The horizontal coordinate of the upper-left corner of the code-block
- ulx - Variable in class jj2000.j2k.wavelet.Subband
-
The horizontal coordinate of the upper-left corner of the subband
- ulxs - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator
-
The upper left xs of the ROIs
- ulxs - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask
-
The upper left x coordinates of the applicable ROIs
- uly - Variable in class jj2000.j2k.codestream.CoordInfo
-
Vertical upper left coordinate in the subband
- uly - Variable in class jj2000.j2k.codestream.PrecInfo
-
Precinct vertical upper-left coordinate in the corresponding
resolution level
- uly - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
-
Upper-left y-coordinate of the code-block (relative to the
tile)
- uly - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
-
The vertical coordinate of the upper left corner of the code-block
- uly - Variable in class jj2000.j2k.image.DataBlk
-
The vertical coordinate of the upper-left corner of the block
of data.
- uly - Variable in class jj2000.j2k.roi.encoder.ROI
-
y coordinate of upper left corner of rectangular ROI
- uly - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
-
Vertical uper-left coordinate of the subband mask
- uly - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The vertical coordinate of the upper left corner of the code-block
- uly - Variable in class jj2000.j2k.wavelet.Subband
-
The vertical coordinate of the upper-left corner of the subband
- ulys - Variable in class jj2000.j2k.roi.encoder.RectROIMaskGenerator
-
The upper left ys of the ROIs
- ulys - Variable in class jj2000.j2k.roi.encoder.SubbandRectROIMask
-
The upper left y coordinates of the applicable ROIs
- UN - Static variable in class loci.formats.in.DicomReader
-
- uncompress(int, byte[]) - Method in class loci.formats.in.AVIReader
-
- uncompress(byte[], String) - Method in class loci.formats.in.NativeQTReader
-
Uncompresses an image plane according to the the codec identifier.
- UNCOMPRESSED - Static variable in class loci.formats.in.ZeissCZIReader
-
Compression constants.
- uncompressedMode - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
Uncompressed mode flag: 1 if uncompressed, 0 if not.
- UNDEFINED_INTEGER_VALUE - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFMetadata
-
Represents an undefined value of integer attributes.
- underline - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- undifference(byte[], IFD) - Static method in enum loci.formats.tiff.TiffCompression
-
Undoes in-place differencing according to the given predictor value.
- unfilter(byte[], byte[], int, int) - Method in class loci.formats.in.APNGReader
-
See http://www.w3.org/TR/PNG/#9Filters.
- ungroupFilesBox - Variable in class loci.plugins.in.MainDialog
-
- UNICODE_TCHAR - Static variable in class loci.formats.in.CellSensReader
-
- UNIF_CTXT - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The UNIFORM context (with a uniform probability distribution which
does not adapt)
- UNIF_CTXT - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The UNIFORM context (with a uniform probability distribution which
does not adapt)
- UNINT16 - Static variable in class loci.formats.in.SPEReader
-
- UNINT32 - Static variable in class loci.formats.in.SPEReader
-
- uniqueFiles - Variable in class loci.formats.out.ICSWriter
-
- uniquePMTs - Variable in class loci.formats.in.ImspectorReader
-
List of PMTs active during acquisition.
- uniqueZ - Variable in class loci.formats.in.PCIReader
-
- UNISOKU_MAGIC_STRING - Static variable in class loci.formats.in.UnisokuReader
-
- UnisokuReader - Class in loci.formats.in
-
UnisokuReader is the file format reader for Unisoku STM files.
- UnisokuReader() - Constructor for class loci.formats.in.UnisokuReader
-
Constructs a new Unisoku reader.
- unit - Variable in class loci.formats.in.ZeissTIFFHandler.Scaling.Dimension
-
- unit - Variable in class loci.formats.Modulo
-
- units - Variable in class loci.formats.in.GatanReader
-
- units - Variable in class loci.formats.in.VarianFDFReader
-
- UNITS_METER - Static variable in class loci.formats.in.NiftiReader
-
Code for meters.
- UNITS_MM - Static variable in class loci.formats.in.NiftiReader
-
Code for millimeters.
- UNITS_MSEC - Static variable in class loci.formats.in.NiftiReader
-
Code for milliseconds.
- UNITS_USEC - Static variable in class loci.formats.in.NiftiReader
-
Code for microseconds.
- UNKNOWN - Static variable in class loci.formats.in.CellSensReader
-
- UNKNOWN - Static variable in class loci.formats.in.GatanReader
-
- unknown1 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown10 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown11 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown12 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown13 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown14 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown15 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown16 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown17 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown18 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown19 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown2 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- UNKNOWN2 - Static variable in class loci.formats.in.GatanReader
-
- unknown3 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown4 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown5 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown6 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown7 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- unknown8 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- UNKNOWN_AXIS - Static variable in class loci.formats.AxisGuesser
-
Axis type for unclassified axes.
- UNKNOWN_BLOBS_VOLUME - Static variable in class loci.formats.in.CellSensReader
-
- UNKNOWN_DOMAIN - Static variable in class loci.formats.FormatTools
-
Identifies an unknown domain.
- unknownColor - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
- unknownColor - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
- UnknownFormatException - Exception in loci.formats
-
UnknownFormatException is the exception thrown when the format of a
particular data stream or filename cannot be recognized or is unsupported.
- UnknownFormatException() - Constructor for exception loci.formats.UnknownFormatException
-
- UnknownFormatException(String) - Constructor for exception loci.formats.UnknownFormatException
-
- UnknownFormatException(String, Throwable) - Constructor for exception loci.formats.UnknownFormatException
-
- UnknownFormatException(Throwable) - Constructor for exception loci.formats.UnknownFormatException
-
- unmagnifiedPixelHeight - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- unmagnifiedPixelWidth - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- unpack(short, byte[], int, int) - Method in class loci.formats.codec.RPZACodec
-
- unpackBits(byte[], int[]) - Method in class loci.formats.in.PictReader
-
PackBits variant that outputs an int array.
- unpackBytes(byte[], int, byte[], IFD) - Static method in class loci.formats.tiff.TiffParser
-
Extracts pixel information from the given byte array according to the
bits per sample, photometric interpretation and color map IFD directory
entry values, and the specified byte ordering.
- unpackEndian - Variable in class loci.formats.in.VeecoReader
-
- unsetColorConverter() - Method in class com.sun.media.imageio.plugins.tiff.TIFFImageWriteParam
-
Removes any currently set
ColorConverter object and
PhotometricInterpretation tag value.
- UnsignedIntBuffer - Class in loci.formats.gui
-
DataBuffer that stores unsigned ints.
- UnsignedIntBuffer(int[], int) - Constructor for class loci.formats.gui.UnsignedIntBuffer
-
Construct a new buffer of unsigned ints using the given int array.
- UnsignedIntBuffer(int[][], int) - Constructor for class loci.formats.gui.UnsignedIntBuffer
-
Construct a new buffer of unsigned ints using the given 2D int array.
- UnsignedIntColorModel - Class in loci.formats.gui
-
ColorModel that handles unsigned 32 bit data.
- UnsignedIntColorModel(int, int, int) - Constructor for class loci.formats.gui.UnsignedIntColorModel
-
- UnsupportedCompressionException - Exception in loci.formats
-
UnsupportedCompressionException is the exception thrown when the compression
scheme used in a particular file or stream is unsupported.
- UnsupportedCompressionException() - Constructor for exception loci.formats.UnsupportedCompressionException
-
- UnsupportedCompressionException(String) - Constructor for exception loci.formats.UnsupportedCompressionException
-
- UnsupportedCompressionException(String, Throwable) - Constructor for exception loci.formats.UnsupportedCompressionException
-
- UnsupportedCompressionException(Throwable) - Constructor for exception loci.formats.UnsupportedCompressionException
-
- unwrap() - Method in class loci.formats.ReaderWrapper
-
Unwraps nested wrapped readers until the core reader (i.e., not
a
ReaderWrapper or ImageReader) is found.
- unwrap(String) - Method in class loci.formats.ReaderWrapper
-
Unwraps nested wrapped readers until the core reader (i.e., not
a
ReaderWrapper or ImageReader) is found.
- unwrap(Class<? extends IFormatReader>, String) - Method in class loci.formats.ReaderWrapper
-
Unwraps nested wrapped readers until the given reader class is found.
- unwrap() - Method in class loci.formats.WriterWrapper
-
Unwraps nested wrapped writers until the core writer (i.e., not
a
WriterWrapper or ImageWriter) is found.
- unwrap(String) - Method in class loci.formats.WriterWrapper
-
Unwraps nested wrapped writers until the core writer (i.e., not
a
WriterWrapper or ImageWriter) is found.
- unwrap(Class<? extends IFormatWriter>, String) - Method in class loci.formats.WriterWrapper
-
Unwraps nested wrapped writers until the given writer class is found.
- unwrap(int) - Static method in class loci.plugins.util.ROIHandler
-
Wraps the specified integer into a Non negative integer.
- UP - Static variable in class loci.formats.in.APNGReader
-
- update(int, int, int, PktHeaderBitReader) - Method in class jj2000.j2k.codestream.reader.TagTreeDecoder
-
Decodes information for the specified element of the tree,
given the threshold, and updates its value.
- update2003FC - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
Stylesheets for updating from previous schema releases.
- update200706 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update200802 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update200809 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update200909 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update201004 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update201006 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update201106 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update201206 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update201306 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- update201501 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- updateBlock(int) - Method in class loci.formats.codec.RPZACodec
-
- updateComposite(int[], int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- updateIfGlitched() - Method in class loci.plugins.in.SeriesDialog
-
- updateLabel(int, int) - Method in class loci.formats.gui.ImageViewer
-
Updates cursor probe label.
- updateLabels(String) - Method in class loci.formats.gui.DataConverter
-
- updateMetadataLists(Hashtable<String, Object>) - Method in class loci.formats.FormatReader
-
For the given metadata hashtable, replace any value that is
a list with one key/value pair per list entry.
- updateMinMax(int, byte[], int) - Method in class loci.formats.MinMaxCalculator
-
Updates min/max values based on the given byte array.
- updateOrder(int) - Method in class loci.formats.gui.CacheComponent
-
Updates cache order to match the state of the GUI.
- updatePending - Variable in class loci.formats.in.ZeissCZIReader.FileHeader
-
- updatePointer(int) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- updatePriority(int) - Method in class loci.formats.gui.CacheComponent
-
Updates cache priority to match the state of the GUI.
- updateProgressWatch(int, String) - Method in interface jj2000.j2k.util.ProgressWatch
-
Update the progress watching process to the specified value
- Updater - Class in loci.plugins
-
A plugin for updating the Bio-Formats plugins.
- Updater() - Constructor for class loci.plugins.Updater
-
- updateRange(int) - Method in class loci.formats.gui.CacheComponent
-
Updates cache range to match the state of the GUI.
- updateSource() - Method in class loci.formats.gui.CacheComponent
-
Updates cache source to match the state of the GUI.
- updateStrategy() - Method in class loci.formats.gui.CacheComponent
-
Updates cache strategy to match the state of the GUI.
- updateTiming(int, int, int, int) - Method in class loci.plugins.in.ImagePlusReader
-
- UPGRADE_CHECK_ALLOWED_PROPERTY - Static variable in class loci.formats.UpgradeChecker
-
System property indicating whether the upgrade check is ever allowed.
- UPGRADE_CHECK_KEY - Static variable in class loci.plugins.config.ConfigWindow
-
- UPGRADE_CHECK_PROPERTY - Static variable in class loci.formats.UpgradeChecker
-
System property to set once the upgrade check is performed.
- upgradeBox - Variable in class loci.plugins.config.ConfigWindow
-
- UpgradeCheck - Class in loci.formats.tools
-
Utility that checks for a new stable version, and optionally installs
a new version of Bio-Formats ueber tools.
- UpgradeCheck() - Constructor for class loci.formats.tools.UpgradeCheck
-
- UpgradeChecker - Class in loci.formats
-
Class that allows checking for new versions of Bio-Formats, as well as
updating to the latest stable, daily, or trunk version.
- UpgradeChecker() - Constructor for class loci.formats.UpgradeChecker
-
- UpgradeDialog - Class in loci.plugins.in
-
Bio-Formats Importer upgrade checker dialog box.
- UpgradeDialog(ImportProcess) - Constructor for class loci.plugins.in.UpgradeDialog
-
Creates an upgrade checker dialog for the Bio-Formats Importer.
- upsampleAndConvolve(float[], float[], float[]) - Static method in class jj2000.j2k.wavelet.analysis.AnWTFilter
-
Returns the signal resulting of upsampling (by 2) the input
signal 'in' and then convolving it with the time-reversed
signal 'wf'.
- url - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
- url - Variable in class loci.plugins.config.ConfigWindow
-
- url - Variable in class loci.plugins.config.LibraryEntry
-
- URL_BF_SOFTWARE - Static variable in class loci.plugins.util.LibraryChecker
-
URL for Bio-Formats web page.
- URL_BIO_FORMATS - Static variable in class loci.formats.FormatTools
-
URL of Bio-Formats web page.
- URL_BIO_FORMATS_IMAGEJ - Static variable in class loci.plugins.About
-
URL of Bio-Formats ImageJ web page.
- URL_BIO_FORMATS_LIBRARIES - Static variable in class loci.formats.FormatTools
-
URL of 'Bio-Formats as a Java Library' web page.
- URL_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- URL_DATA_BROWSER - Static variable in class loci.plugins.About
-
URL of Data Browser web page.
- URL_JAVADOCS - Static variable in class loci.plugins.macro.LociFunctions
-
URL for Javadocs.
- URL_NIKON_ND2 - Static variable in class loci.formats.in.LegacyND2Reader
-
- URL_OME_TIFF - Static variable in class loci.formats.FormatTools
-
URL of OME-TIFF web page.
- URL_SOFTWARE - Static variable in class loci.plugins.About
-
URL of the Bio-Formats web page.
- urlPath - Variable in class loci.plugins.Updater
-
Path to ueber-jar whether bioformats_package.jar or loci_tools.jar.
- US - Static variable in class loci.formats.in.DicomReader
-
- use64Bit - Variable in class loci.formats.in.MinimalTiffReader
-
- USE_CHUNKMAP_DEFAULT - Static variable in class loci.formats.in.NativeND2Reader
-
- USE_CHUNKMAP_KEY - Static variable in class loci.formats.in.NativeND2Reader
-
- USE_ORIGINAL_FRAME_RATE - Static variable in class loci.formats.in.CellSensReader
-
- usebais - Variable in class jj2000.j2k.codestream.reader.PktHeaderBitReader
-
Flag indicating whether the data should be read from the buffer
- useChunkMap() - Method in class loci.formats.in.NativeND2Reader
-
- used - Variable in class loci.formats.in.APLReader
-
- used - Variable in class loci.formats.in.BioRadReader
-
- used - Variable in class loci.formats.in.OMETiffReader
-
List of used files.
- usedFile(String) - Method in class loci.formats.in.LeicaReader
-
- usedFiles - Variable in class loci.formats.in.CellSensReader
-
- usedFiles - Variable in class loci.formats.in.FV1000Reader
-
Used file list.
- usedSize - Variable in class loci.formats.in.ZeissCZIReader.Segment
-
- usedToInitialize - Variable in class loci.formats.FileInfo
-
Whether or not this file can be passed to the appropriate reader's
setId(String) method.
- useLegacy - Variable in class loci.formats.DelegateReader
-
Flag indicating whether to use legacy reader by default.
- useMotor - Variable in class loci.formats.in.SDTInfo
-
- useND2Chunkmap() - Static method in class loci.plugins.util.LociPrefs
-
- useOldPhysicalSizeCalculation() - Method in class loci.formats.in.LIFReader
-
- usePOCQuit - Variable in class jj2000.j2k.codestream.reader.FileBitstreamReaderAgent
-
Whether or not to use only first progression order
- USER - Static variable in class loci.formats.in.OpenlabReader
-
- USER_COMMENT - Static variable in class loci.formats.tiff.IFD
-
- UserComment() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.UserComment
-
- userDisplayName - Variable in class loci.formats.in.ZeissCZIReader
-
- userEmail - Variable in class loci.formats.in.ZeissCZIReader
-
- userFirstName - Variable in class loci.formats.in.ZeissCZIReader
-
- userInputFlag - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageMetadata
-
- userInstitution - Variable in class loci.formats.in.ZeissCZIReader
-
- userLastName - Variable in class loci.formats.in.ZeissCZIReader
-
- userMetadataStore - Variable in class loci.formats.Memoizer
-
MetadataStore set by the caller.
- userMiddleName - Variable in class loci.formats.in.ZeissCZIReader
-
- userName - Variable in class loci.formats.in.FEITiffReader
-
- userName - Variable in class loci.formats.in.ZeissCZIReader
-
- userName - Variable in class loci.formats.in.ZeissLSMReader
-
- useRoi() - Method in class jj2000.j2k.roi.encoder.ROIScaler
-
This function returns the flag indicating if any ROI functionality used
- useStartLevel - Variable in class jj2000.j2k.roi.encoder.ROIScaler
-
Number of resolution levels to include in ROI mask
- useZ - Variable in class loci.formats.in.NativeND2Reader
-
- USHORT - Static variable in class loci.formats.in.CellSensReader
-
- USHORT - Static variable in class loci.formats.in.GatanReader
-
- usingCodecLib - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
- UT - Static variable in class loci.formats.in.DicomReader
-
- utdepth - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
The bit-depths of un-transformed components
- utrb - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
The "range bits" for each un-transformed component
- uuid - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
The data elements in this UUID box.
- uuid - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- uuid - Variable in class loci.formats.in.LeicaSCNReader.ImageCollection
-
- UUID_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- UUID_INFO_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- UUID_LIST_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
UUID Info Boxes
- UUIDBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a UUID Box of JPEG JP2
file format.
- UUIDBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
Constructs a
UUIDBox from its content data array.
- UUIDBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDBox
-
Constructs a
UUIDBox based on the provided
org.w3c.dom.Node.
- UUIDListBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a UUID list Box of JPEG JP2
file format.
- UUIDListBox(short, byte[][]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
Constructs a
UUIDListBox from the provided uuid number
and uuids.
- UUIDListBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
Constructs a
UUIDListBox from the provided content
data array.
- UUIDListBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
Constructs a
UUIDListBox based on the provided
org.w3c.dom.Node.
- uuids - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.UUIDListBox
-
- uuids - Variable in class loci.formats.out.OMETiffWriter
-
V
- V3DrawWriter - Class in loci.formats.out
-
V3DrawWriter writes images in the .v3draw format for rapid I/O in Vaa3D, an open-source 3D visualization and
analysis toolkit.
- V3DrawWriter() - Constructor for class loci.formats.out.V3DrawWriter
-
- valid - Variable in class loci.formats.FilePattern
-
The validity of the file pattern.
- valid() - Method in class loci.formats.in.BaseZeissReader.Tag
-
Check if the tag is valid (key, value and category have been set).
- valid - Variable in class loci.formats.in.LeicaReader
-
- valid - Variable in class loci.formats.in.LeicaSCNReader.LeicaSCNHandler
-
- valid() - Method in class loci.formats.in.ZeissTIFFHandler.Tag
-
Check if the tag is valid (key, value and category have been set).
- validate - Variable in class loci.formats.in.DefaultMetadataOptions
-
- validateOMEXML(String) - Method in interface loci.formats.services.OMEXMLService
-
Attempts to validate the given OME-XML string using
Java's XML validation facility.
- validateOMEXML(String, boolean) - Method in interface loci.formats.services.OMEXMLService
-
Attempts to validate the given OME-XML string using
Java's XML validation facility.
- validateOMEXML(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- validateOMEXML(String, boolean) - Method in class loci.formats.services.OMEXMLServiceImpl
-
- validBits - Variable in class loci.formats.FormatWriter
-
The number of valid bits per pixel.
- validBits - Variable in class loci.formats.in.FV1000Reader
-
- validChannel - Variable in class loci.formats.in.ScanrReader.ScanrHandler
-
- validLoopState - Variable in class loci.formats.in.ND2Handler
-
- validReaders - Variable in class loci.formats.in.ScreenReader
-
- validStream(RandomAccessInputStream, int, boolean) - Static method in class loci.formats.FormatTools
-
Returns true if the given RandomAccessInputStream conatins at least
'len' bytes.
- validZ - Variable in class loci.formats.in.MetamorphReader
-
- value - Variable in enum loci.formats.in.BaseZeissReader.Charset
-
- value - Variable in enum loci.formats.in.BaseZeissReader.DrawStyle
-
- value - Variable in enum loci.formats.in.BaseZeissReader.FeatureType
-
- value - Variable in enum loci.formats.in.BaseZeissReader.FillStyle
-
- value - Variable in enum loci.formats.in.BaseZeissReader.LineEndPositions
-
- value - Variable in enum loci.formats.in.BaseZeissReader.LineEndStyle
-
- value - Variable in enum loci.formats.in.BaseZeissReader.PointStyle
-
- value - Variable in class loci.formats.in.BaseZeissReader.Tag
-
- value - Variable in enum loci.formats.in.BaseZeissReader.TextAlignment
-
- VALUE - Static variable in class loci.formats.in.CellSensReader
-
- value - Variable in class loci.formats.in.FEITiffReader.FEIHandler
-
- VALUE - Static variable in class loci.formats.in.GatanReader
-
- value - Variable in class loci.formats.in.ImaconReader.ImaconHandler
-
- value - Variable in class loci.formats.in.IvisionReader.IvisionHandler
-
- value(PrairieMetadata.Value) - Method in class loci.formats.in.PrairieMetadata
-
Returns
value.value(), or null if value is null.
- value(PrairieMetadata.Value, String) - Method in class loci.formats.in.PrairieMetadata
-
Returns
value.get(key).value(), or null if value or
value.get(key) is null.
- value(PrairieMetadata.Value, int) - Method in class loci.formats.in.PrairieMetadata
-
Returns
value.get(index).value(), or null if value or
value.get(index) is null.
- value() - Method in interface loci.formats.in.PrairieMetadata.Value
-
- value - Variable in class loci.formats.in.PrairieMetadata.ValueItem
-
- value() - Method in class loci.formats.in.PrairieMetadata.ValueItem
-
- value() - Method in class loci.formats.in.PrairieMetadata.ValueTable
-
- value - Variable in class loci.formats.in.ZeissTIFFHandler.Tag
-
- value - Variable in class loci.formats.meta.OriginalMetadataAnnotation
-
- value - Variable in class loci.plugins.prefs.BooleanOption
-
The option's current value.
- value - Variable in class loci.plugins.prefs.DoubleOption
-
The option's current value.
- value - Variable in class loci.plugins.prefs.StringOption
-
The option's current value.
- valueChanged(ListSelectionEvent) - Method in class loci.plugins.config.ConfigWindow
-
- valueCount - Variable in class loci.formats.tiff.TiffIFDEntry
-
The number of values, Count of the indicated Type.
- ValueItem(String, String) - Constructor for class loci.formats.in.PrairieMetadata.ValueItem
-
- valueNames - Variable in class com.sun.media.imageio.plugins.tiff.TIFFTag
-
- valueOf(String) - Static method in enum loci.formats.codec.CompressionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.codec.JPEG2000BoxType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.codec.JPEG2000SegmentMarker
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.Charset
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.Context
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.DrawStyle
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.FeatureType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.FillStyle
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.LineEndPositions
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.LineEndStyle
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.PointStyle
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.BaseZeissReader.TextAlignment
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.MetadataLevel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.SPEReader.SpeHeaderEntry
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.in.SPEReader.SpeHeaderType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.tiff.IFDType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.tiff.PhotoInterp
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.formats.tiff.TiffCompression
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.plugins.in.ImportStep
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum loci.plugins.util.LibraryChecker.Library
-
Returns the enum constant of this type with the specified name.
- valueOffset - Variable in class loci.formats.tiff.TiffIFDEntry
-
The Value Offset, the file offset (in bytes) of the Value
for the field.
- values() - Static method in enum loci.formats.codec.CompressionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.codec.JPEG2000BoxType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.codec.JPEG2000SegmentMarker
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.Charset
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.Context
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.DrawStyle
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.FeatureType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.FillStyle
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.LineEndPositions
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.LineEndStyle
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.PointStyle
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.BaseZeissReader.TextAlignment
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.MetadataLevel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.SPEReader.SpeHeaderEntry
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.in.SPEReader.SpeHeaderType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.tiff.IFDType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.tiff.PhotoInterp
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.formats.tiff.TiffCompression
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.plugins.in.ImportStep
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum loci.plugins.util.LibraryChecker.Library
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- valuesByKey(Map<K, V>) - Method in class loci.formats.in.PrairieMetadata
-
Gets the values of the given map, sorted by key.
- ValueTable() - Constructor for class loci.formats.in.PrairieMetadata.ValueTable
-
- valueToIndex - Variable in class loci.formats.in.FakeReader
-
For indexed color, mapping from indices to values and vice versa.
- valueType - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFAttrInfo
-
- variableList - Variable in class loci.formats.services.NetCDFServiceImpl
-
- VarianFDFReader - Class in loci.formats.in
-
VarianFDFReader is the file format reader for Varian FDF files.
- VarianFDFReader() - Constructor for class loci.formats.in.VarianFDFReader
-
Constructs a new Varian FDF reader.
- variant - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
File variant: PBM/PGM/PPM, ASCII/RAW.
- variant - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- variant - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
The image variants.
- VCLOCK_AMPLITUDE - Static variable in class loci.formats.in.CellSensReader
-
- VCS_REVISION - Static variable in class loci.formats.FormatTools
-
Current VCS revision.
- VCS_SHORT_REVISION - Static variable in class loci.formats.FormatTools
-
Deprecated.
Use the general
FormatTools.VCS_REVISION field.
- vdpi - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- VECTOR_DATA - Static variable in class loci.formats.in.CellSensReader
-
- VECTOR_LAYER_VOLUME - Static variable in class loci.formats.in.CellSensReader
-
- VeecoReader - Class in loci.formats.in
-
VeecoReader is the file format reader for Veeco HDF files.
- VeecoReader() - Constructor for class loci.formats.in.VeecoReader
-
Constructs a new Veeco reader.
- vendor - Static variable in class com.sun.media.imageioimpl.common.PackageUtil
-
Implementation vendor derived from Manifest.
- vendorName - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- verber - Variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Flag to indicate if we should be verbose about bit stream errors
detected with the error resilience options
- verifyMinimumPopulated(MetadataRetrieve) - Static method in class loci.formats.MetadataTools
-
Checks whether the given metadata object has the minimum metadata
populated to successfully describe an Image.
- verifyMinimumPopulated(MetadataRetrieve, int) - Static method in class loci.formats.MetadataTools
-
Checks whether the given metadata object has the minimum metadata
populated to successfully describe the nth Image.
- verifyOMENamespace(String) - Method in class loci.formats.services.OMEXMLServiceImpl
-
Ensures that an xmlns:ome element exists.
- verifyOptions(Object) - Method in class loci.plugins.in.MainDialog
-
Ensures that the options dialog has no mutually exclusive options.
- version - Static variable in class com.sun.media.imageioimpl.common.PackageUtil
-
Implementation version derived from Manifest.
- version - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- version - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- version - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.DataEntryURLBox
-
The element values.
- version - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- version - Static variable in class jj2000.j2k.JJ2KInfo
-
The version number (such as 2.0, 2.1.1, etc.)
- VERSION - Static variable in class loci.formats.FormatTools
-
Version number of this release.
- version - Variable in class loci.formats.in.GatanReader
-
- version - Variable in class loci.formats.in.LiFlimReader
-
- version - Variable in class loci.formats.in.OpenlabReader
-
LIFF version (should be 2 or 5).
- VERSION - Static variable in class loci.formats.Memoizer
-
Default file version.
- version - Variable in class loci.plugins.config.ConfigWindow
-
- version - Variable in class loci.plugins.config.LibraryEntry
-
- VERSION_2 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Deprecated.
- VERSION_2 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- VERSION_2_1_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_2_24_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_2_4_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_2_5 - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
-
- VERSION_2_8_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_2_8_W_PALETTE - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
-
- VERSION_2_8_WO_PALETTE - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
-
- VERSION_3 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Deprecated.
- VERSION_3 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- VERSION_3_0 - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
-
- VERSION_3_1_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_3_24_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_3_4_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_3_8_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_3_NT - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- VERSION_3_NT_16_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_3_NT_32_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_3_XP_EMBEDDED - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_4 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Deprecated.
- VERSION_4 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- VERSION_4_16_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_4_1_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_4_24_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_4_32_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_4_4_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_4_8_BIT - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_4_XP_EMBEDDED - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_5 - Static variable in class com.sun.media.imageio.plugins.bmp.BMPImageWriteParam
-
Deprecated.
- VERSION_5 - Static variable in interface com.sun.media.imageioimpl.plugins.bmp.BMPConstants
-
- VERSION_5_XP_EMBEDDED - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
- VERSION_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- VERSION_NUMBER - Static variable in class loci.formats.in.CellSensReader
-
- VERSION_PC_WINDOWS - Static variable in interface com.sun.media.imageioimpl.plugins.pcx.PCXConstants
-
- VERSION_PROPERTIES - Static variable in class loci.formats.FormatTools
-
- versionChecking - Variable in class loci.formats.Memoizer
-
Boolean specifying whether to invalidate the memo file based upon
mismatched major/minor version numbers.
- versionMismatch() - Method in class loci.formats.Memoizer
-
Returns
true if the version of the memo file as returned by
Memoizer.Deser.loadReleaseVersion() and Memoizer.Deser.loadRevision()
do not match the current version as specified by FormatTools.VERSION.
- versionOne - Variable in class loci.formats.in.PictReader
-
Whether or not the file is PICT v1.
- versionStrings - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFStreamMetadata
-
- versionTwo - Variable in class loci.formats.in.ICSReader
-
Flag indicating whether current file is v2.0.
- vert - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Black and white vertical mode table.
- VERTICAL_CLOCK_VOLTAGE - Static variable in class loci.formats.in.FluoviewReader
-
- VERTICAL_FLIP - Static variable in class loci.formats.in.FluoviewReader
-
- VERTICAL_SHIFT_SPEED - Static variable in class loci.formats.in.FluoviewReader
-
- vertMode - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
Vertical mode table.
- vFilter - Variable in class jj2000.j2k.wavelet.analysis.SubbandAn
-
The vertical analysis filter used to decompose this
subband.
- vFilter - Variable in class jj2000.j2k.wavelet.synthesis.SubbandSyn
-
The vertical analysis filter used to decompose this subband,
from its childs.
- VG_MAGIC_STRING - Static variable in class loci.formats.in.VGSAMReader
-
- VGSAMReader - Class in loci.formats.in
-
VGSAMReader is the file format reader for VG SAM .dti files.
- VGSAMReader() - Constructor for class loci.formats.in.VGSAMReader
-
Constructs a new VG SAM reader.
- VIEW_BROWSER - Static variable in class loci.plugins.in.ImporterOptions
-
- VIEW_HYPERSTACK - Static variable in class loci.plugins.in.ImporterOptions
-
- VIEW_IMAGE_5D - Static variable in class loci.plugins.in.ImporterOptions
-
- VIEW_KEYS - Static variable in class loci.formats.in.ICSReader
-
- VIEW_NONE - Static variable in class loci.plugins.in.ImporterOptions
-
- VIEW_STANDARD - Static variable in class loci.plugins.in.ImporterOptions
-
- VIEW_VIEW_5D - Static variable in class loci.plugins.in.ImporterOptions
-
- virtualBox - Variable in class loci.plugins.in.MainDialog
-
- VirtualImagePlus - Class in loci.plugins.util
-
Extension of
ImagePlus that supports
Bio-Formats-driven virtual stacks.
- VirtualImagePlus(String, ImageStack) - Constructor for class loci.plugins.util.VirtualImagePlus
-
- virtualReader - Variable in class loci.plugins.in.ImportProcess
-
- VirtualReader - Class in loci.plugins.util
-
TODO
- VirtualReader(IFormatReader) - Constructor for class loci.plugins.util.VirtualReader
-
- VisitechReader - Class in loci.formats.in
-
VisitechReader is the file format reader for Visitech XYS files.
- VisitechReader() - Constructor for class loci.formats.in.VisitechReader
-
- vOffsetX - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- vOffsetY - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- VolocityClippingReader - Class in loci.formats.in
-
VolocityClippingReader is the file format reader for Volocity library
clipping files.
- VolocityClippingReader() - Constructor for class loci.formats.in.VolocityClippingReader
-
Constructs a new Volocity clipping reader.
- VolocityReader - Class in loci.formats.in
-
VolocityReader is the file format reader for Volocity library files.
- VolocityReader() - Constructor for class loci.formats.in.VolocityReader
-
Constructs a new Volocity reader.
- VolocityReader.Stack - Class in loci.formats.in
-
- voltage - Variable in class loci.formats.in.FV1000Reader.ChannelData
-
- voltage - Variable in class loci.formats.in.GatanReader
-
- voltage - Variable in class loci.formats.in.LeicaHandler.Detector
-
- voltage - Variable in class loci.formats.in.LeicaReader.Detector
-
- voltage - Variable in class loci.formats.in.MicromanagerReader.Position
-
- voltage - Variable in class loci.formats.in.ND2Handler
-
- voltage - Variable in class loci.formats.in.OIRReader.Detector
-
- voltages - Variable in class loci.formats.in.FluoviewReader
-
- VOLUME_INDEX - Static variable in class loci.formats.in.CellSensReader
-
- volumeType - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- voxelC - Variable in class loci.formats.in.FluoviewReader
-
Pixel dimensions for this file.
- voxelHeight - Variable in class loci.formats.in.NiftiReader
-
- voxelT - Variable in class loci.formats.in.FluoviewReader
-
Pixel dimensions for this file.
- voxelWidth - Variable in class loci.formats.in.NiftiReader
-
- voxelX - Variable in class loci.formats.in.FluoviewReader
-
Pixel dimensions for this file.
- voxelX - Variable in class loci.formats.in.TCSReader
-
- voxelY - Variable in class loci.formats.in.FluoviewReader
-
Pixel dimensions for this file.
- voxelY - Variable in class loci.formats.in.TCSReader
-
- voxelZ - Variable in class loci.formats.in.FluoviewReader
-
Pixel dimensions for this file.
- voxelZ - Variable in class loci.formats.in.TCSReader
-
- voxSz - Variable in class loci.formats.services.WlzServiceImpl
-
- vPredictor - Variable in class loci.formats.codec.NikonCodecOptions
-
- vPredictor - Variable in class loci.formats.in.NikonReader
-
- vr - Variable in class loci.formats.in.DicomReader
-
- vRes - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.ResolutionBox
-
- vsize - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- vSizeX - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- vSizeY - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- vSpacingZ - Variable in class loci.formats.in.LeicaSCNReader.Image
-
- VSTD_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The mask to isolate the visited bits for row 1 and 2 of the state
array.
- VSTD_MASK_R1R2 - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The mask to isolate the visited bits for row 1 and 2 of the state
array.
W
- w - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- w - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The width of the image
- w - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- w - Variable in class jj2000.j2k.codestream.CoordInfo
-
Object's width
- w - Variable in class jj2000.j2k.codestream.PrecInfo
-
Precinct width in the corresponding resolution level
- w - Variable in class jj2000.j2k.codestream.reader.CBlkInfo
-
Width of the code-block
- w - Variable in class jj2000.j2k.codestream.reader.TagTreeDecoder
-
The horizontal dimension of the base level
- w - Variable in class jj2000.j2k.codestream.writer.TagTreeEncoder
-
The horizontal dimension of the base level
- w - Variable in class jj2000.j2k.entropy.decoder.DecLyrdCBlk
-
The width of the code-block
- w - Variable in class jj2000.j2k.image.DataBlk
-
The width of the block, in pixels.
- w - Variable in class jj2000.j2k.image.ImgDataJoiner
-
The width of the image
- w - Variable in class jj2000.j2k.image.input.ImgReader
-
The width of the image
- w - Variable in class jj2000.j2k.roi.encoder.ROI
-
width of rectangular ROI
- w - Variable in class jj2000.j2k.roi.encoder.SubbandROIMask
-
Width of the subband mask
- w - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The width of the code-block
- w - Variable in class jj2000.j2k.wavelet.Subband
-
The width of the subband
- W5X3 - Static variable in interface jj2000.j2k.wavelet.FilterTypes
-
W5x3 filter: 0x01
- W9X7 - Static variable in interface jj2000.j2k.wavelet.FilterTypes
-
W7x9 filter: 0x00
- wait(boolean) - Method in class loci.formats.gui.ImageViewer
-
Toggles wait cursor.
- waitTime - Variable in class loci.formats.in.PrairieMetadata
-
The wait time of the acquisition.
- warn(boolean, String) - Static method in class loci.plugins.BF
-
- warnFile(PrairieMetadata.Sequence, int, int) - Method in class loci.formats.in.PrairieReader
-
Emits a warning about a missing
<File>.
- warnFilename(PrairieMetadata.Sequence, int, int) - Method in class loci.formats.in.PrairieReader
-
Emits a warning about a
<File>'s missing filename.
- warnFrame(PrairieMetadata.Sequence, int) - Method in class loci.formats.in.PrairieReader
-
Emits a warning about a missing
<Frame>.
- warning(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- warning(String) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFYCbCrDecompressor
-
- WARNING - Static variable in interface jj2000.j2k.util.MsgLogger
-
Severity of message.
- WARNING_COMMENT - Static variable in class loci.formats.out.OMETiffWriter
-
- wasCanceled() - Method in class loci.plugins.in.ImportProcess
-
Gets whether the import process was canceled.
- WAT_MAGIC_STRING - Static variable in class loci.formats.in.WATOPReader
-
- watchProgList - Static variable in class jj2000.j2k.util.FacilityManager
-
The ProgressWatch instance associated to different threads
- WATOPReader - Class in loci.formats.in
-
WATOPReader is the file format reader for WA Technology .wat files.
- WATOPReader() - Constructor for class loci.formats.in.WATOPReader
-
Constructs a new WA Technology reader.
- wave - Variable in class loci.formats.in.MetamorphReader
-
- wavelength - Variable in class loci.formats.in.IvisionReader
-
- wavelength - Variable in class loci.formats.in.LeicaHandler.Laser
-
- wavelength - Variable in class loci.formats.in.NikonTiffReader
-
- wavelength - Variable in class loci.formats.in.OIRReader.Laser
-
- wavelength - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- wavelength - Variable in class loci.formats.in.ZeissLSMReader.IlluminationChannel
-
- wavelengths - Variable in class loci.formats.in.FV1000Reader
-
- wavelengths - Variable in class loci.formats.in.IM3Reader.Spectrum
-
- wavelengths - Variable in class loci.formats.in.MetamorphHandler
-
- wavelet2DDecomposition(DataBlk, SubbandAn, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Performs the 2D forward wavelet transform on a subband of the initial
band.
- wavelet2DReconstruction(DataBlk, SubbandSyn, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Performs the 2D inverse wavelet transform on a subband of the image, on
the specified component.
- WaveletFilter - Interface in jj2000.j2k.wavelet
-
This interface defines how a wavelet filter implementation should
present itself.
- WaveletTransform - Interface in jj2000.j2k.wavelet
-
This interface defines how a forward or inverse wavelet transform
should present itself.
- waveletTreeDecomposition(DataBlk, SubbandAn, int) - Method in class jj2000.j2k.wavelet.analysis.ForwWTFull
-
Performs the forward wavelet transform on the whole band.
- waveletTreeReconstruction(DataBlk, SubbandSyn, int) - Method in class jj2000.j2k.wavelet.synthesis.InvWTFull
-
Performs the inverse wavelet transform on the whole component.
- waveMax - Variable in class loci.formats.in.PrairieMetadata.PFile
-
wavelengthMax attribute of this <File>.
- waveMin - Variable in class loci.formats.in.PrairieMetadata.PFile
-
wavelengthMin attribute of this <File>.
- waveNames - Variable in class loci.formats.in.MetamorphReader
-
- WB_MODE - Static variable in class loci.formats.in.CellSensReader
-
- WB_PRESET_ID - Static variable in class loci.formats.in.CellSensReader
-
- WB_PRESET_NAME - Static variable in class loci.formats.in.CellSensReader
-
- wbg - Variable in class loci.formats.in.MRWReader
-
- WBMPImageReader - Class in com.sun.media.imageioimpl.plugins.wbmp
-
This class is the Java Image IO plugin reader for WBMP images.
- WBMPImageReader(ImageReaderSpi) - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
Constructs
WBMPImageReader from the provided
ImageReaderSpi.
- WBMPImageReaderSpi - Class in com.sun.media.imageioimpl.plugins.wbmp
-
- WBMPImageReaderSpi() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- WBMPImageWriter - Class in com.sun.media.imageioimpl.plugins.wbmp
-
The Java Image IO plugin writer for encoding a binary RenderedImage into
a WBMP format.
- WBMPImageWriter(ImageWriterSpi) - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
Constructs
WBMPImageWriter based on the provided
ImageWriterSpi.
- WBMPImageWriterSpi - Class in com.sun.media.imageioimpl.plugins.wbmp
-
- WBMPImageWriterSpi() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriterSpi
-
- WBMPMetadata - Class in com.sun.media.imageioimpl.plugins.wbmp
-
- WBMPMetadata() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- WBMPMetadataFormat - Class in com.sun.media.imageioimpl.plugins.wbmp
-
- WBMPMetadataFormat() - Constructor for class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadataFormat
-
- wbmpType - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
- wbmpType - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- wc - Variable in class loci.formats.gui.DataConverter
-
- wd - Variable in class loci.formats.in.OIRReader.Objective
-
- WELL - Static variable in class loci.formats.in.CellH5Reader.CellH5Constants
-
- well - Variable in class loci.formats.in.CellH5Reader.CellH5Coordinate
-
- well - Variable in class loci.formats.in.FlexReader.FlexHandler
-
- Well(int, int, int) - Constructor for class loci.formats.in.MetamorphTiffReader.Well
-
- well - Variable in class loci.formats.in.MetamorphTiffReader.Well
-
- well - Variable in class loci.formats.in.MIASReader.AnalysisFile
-
- WELL - Static variable in class loci.formats.ResourceNamer
-
- wellCol - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler
-
- wellCols - Variable in class loci.formats.in.BDReader
-
- wellCols - Variable in class loci.formats.in.InCellReader
-
- wellColumns - Variable in class loci.formats.in.FlexReader
-
- wellColumns - Variable in class loci.formats.in.MIASReader
-
- wellColumns - Variable in class loci.formats.in.ScanrReader
-
- wellCoordinates - Variable in class loci.formats.in.InCellReader
-
- wellCount - Variable in class loci.formats.in.FlexReader
-
- wellCount - Variable in class loci.formats.in.MetamorphTiffReader
-
- wellCount - Variable in class loci.formats.in.ScanrReader
-
- wellFiles - Variable in class loci.formats.in.CellWorxReader
-
- wellIndex - Variable in class loci.formats.in.ScanrReader.ScanrHandler
-
- WellInfo() - Constructor for class loci.formats.in.CellVoyagerReader.WellInfo
-
- wellLabels - Variable in class loci.formats.in.BDReader
-
- wellLabels - Variable in class loci.formats.in.ScanrReader
-
- wellList - Variable in class loci.formats.in.BDReader
-
- wellNumber - Variable in class loci.formats.in.FlexReader
-
Specifies the row and column index into 'flexFiles' for a given well.
- wellNumber - Variable in class loci.formats.in.MIASReader
-
- wellNumbers - Variable in class loci.formats.in.ScanrReader
-
- wellRow - Variable in class loci.formats.in.InCellReader.MinimalInCellHandler
-
- wellRows - Variable in class loci.formats.in.BDReader
-
- wellRows - Variable in class loci.formats.in.FlexReader
-
- wellRows - Variable in class loci.formats.in.InCellReader
-
- wellRows - Variable in class loci.formats.in.ScanrReader
-
- wells - Variable in class loci.formats.in.CellVoyagerReader
-
- wfs - Variable in class jj2000.j2k.decoder.DecoderSpecs
-
Analysis wavelet filters specifications
- wfs - Variable in class jj2000.j2k.image.forwcomptransf.ForwCompTransf
-
The wavelet filter specifications
- wfs - Variable in class jj2000.j2k.image.invcomptransf.InvCompTransf
-
The wavelet filter specifications
- wfs - Variable in class jj2000.j2k.quantization.dequantizer.Dequantizer
-
Reference to the wavelet filter specifications
- WHITE - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxCompressor
-
The CCITT numerical definition of white.
- white - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFFaxDecompressor
-
- WHITE_BALANCE - Static variable in class loci.formats.tiff.IFD
-
- WHITE_BALANCE_AUTO - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "WhiteBalance" tag.
- WHITE_BALANCE_FINE - Static variable in class loci.formats.in.NikonReader
-
- WHITE_BALANCE_MANUAL - Static variable in class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet
-
A value to be used with the "WhiteBalance" tag.
- WHITE_BALANCE_RGB_COEFFS - Static variable in class loci.formats.in.DNGReader
-
- WHITE_BALANCE_RGB_COEFFS - Static variable in class loci.formats.in.NikonReader
-
- WHITE_POINT - Static variable in class loci.formats.tiff.IFD
-
- WhiteBalance() - Constructor for class com.sun.media.imageio.plugins.tiff.EXIFTIFFTagSet.WhiteBalance
-
- whiteBalance - Variable in class loci.formats.in.DNGReader
-
- whiteBalance - Variable in class loci.formats.in.NikonReader
-
- WhitePoint() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.WhitePoint
-
- WIDE_FIELD - Static variable in class loci.formats.in.LegacyND2Reader
-
Modality types.
- WIDER - Static variable in class loci.formats.in.CellSensReader
-
- WIDER_ENABLED - Static variable in class loci.formats.in.CellSensReader
-
- widgets - Variable in class loci.plugins.config.FlexWidgets
-
- widgets - Variable in class loci.plugins.config.FormatEntry
-
- widgets - Variable in class loci.plugins.config.LIFWidgets
-
- widgets - Variable in class loci.plugins.config.ND2Widgets
-
- widgets - Variable in class loci.plugins.config.PictWidgets
-
- widgets - Variable in class loci.plugins.config.QTWidgets
-
- widgets - Variable in class loci.plugins.config.SDTWidgets
-
- widgets - Variable in class loci.plugins.config.TiffDelegateWidgets
-
- widgets - Variable in class loci.plugins.config.ZeissCZIWidgets
-
- width - Variable in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
The image's width in pixels.
- width - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReader
-
The original image width.
- width - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- width - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.HeaderBox
-
The element values.
- width - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
-
The image width.
- width - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
- width - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- width - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReader
-
The original image width.
- width - Variable in class com.sun.media.imageioimpl.plugins.pnm.PNMMetadata
-
The image width.
- width - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReader
-
- width - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFRenderedImage
-
- width - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReader
-
The original image width.
- width - Variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPMetadata
-
- width - Variable in class jj2000.j2k.fileformat.reader.FileFormatReader
-
Parameters in header box
- width - Variable in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
Image width
- width - Variable in class loci.formats.codec.CodecOptions
-
Width, in pixels, of the image.
- width - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
- width - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- width - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- width - Variable in class loci.formats.in.CellVoyagerReader.AreaInfo
-
- width - Variable in class loci.formats.in.CellVoyagerReader.ChannelInfo
-
- width - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- width - Variable in class loci.formats.in.SDTInfo
-
- width - Variable in class loci.formats.out.LegacyQTWriter
-
Frame width.
- width - Variable in class loci.formats.tools.AmiraParameters
-
- WINDOW_CENTER - Static variable in class loci.formats.in.DicomReader
-
- WINDOW_WIDTH - Static variable in class loci.formats.in.DicomReader
-
- windowActivated(WindowEvent) - Method in class loci.formats.gui.ImageViewer
-
- windowClosed(WindowEvent) - Method in class loci.formats.gui.ImageViewer
-
- windowClosing(WindowEvent) - Method in class loci.formats.gui.ImageViewer
-
- windowDeactivated(WindowEvent) - Method in class loci.formats.gui.ImageViewer
-
- windowDeiconified(WindowEvent) - Method in class loci.formats.gui.ImageViewer
-
- windowIconified(WindowEvent) - Method in class loci.formats.gui.ImageViewer
-
- windowlessBox - Variable in class loci.plugins.config.ConfigWindow
-
- windowOpened(WindowEvent) - Method in class loci.formats.gui.ImageViewer
-
- WindowTools - Class in loci.plugins.util
-
Utility methods for managing ImageJ dialogs and windows.
- WindowTools() - Constructor for class loci.plugins.util.WindowTools
-
- withinPixels(long) - Method in class loci.formats.in.SlidebookReader
-
- wlz - Variable in class loci.formats.in.WlzReader
-
- wlz - Variable in class loci.formats.out.WlzWriter
-
- WLZ_ORG_LABEL - Static variable in class loci.formats.services.WlzServiceImpl
-
- WLZ_SERVICE_READ - Static variable in class loci.formats.services.WlzServiceImpl
-
- WLZ_SERVICE_UNKNOWN - Static variable in class loci.formats.services.WlzServiceImpl
-
- WLZ_SERVICE_WRITE - Static variable in class loci.formats.services.WlzServiceImpl
-
- wlzFP - Variable in class loci.formats.services.WlzServiceImpl
-
- wlzObj - Variable in class loci.formats.services.WlzServiceImpl
-
- WlzReader - Class in loci.formats.in
-
WlzReader is a file format reader for Woolz files.
- WlzReader() - Constructor for class loci.formats.in.WlzReader
-
- WlzService - Interface in loci.formats.services
-
- WlzServiceImpl - Class in loci.formats.services
-
- WlzServiceImpl() - Constructor for class loci.formats.services.WlzServiceImpl
-
- wlzVersion - Variable in class loci.formats.services.WlzServiceImpl
-
- WlzWriter - Class in loci.formats.out
-
WlzWriter is the file format writer for Woolz files.
- WlzWriter() - Constructor for class loci.formats.out.WlzWriter
-
- wmseScaling - Variable in class jj2000.j2k.wavelet.analysis.CBlkWTData
-
The WMSE scaling factor (multiplicative) to apply to the distortion
measures of the data of this code-block.
- WORKING_DISTANCE - Static variable in class loci.formats.in.CellSensReader
-
- workingDistance - Variable in class loci.formats.in.CellSensReader.Pyramid
-
- workingDistance - Variable in class loci.formats.in.FV1000Reader
-
- workingDistance - Variable in class loci.formats.in.LEOReader
-
- workingDistance - Variable in class loci.formats.in.NikonTiffReader
-
- wp - Variable in class jj2000.j2k.codestream.writer.HeaderEncoder
-
The encoder specifications
- wp - Variable in class jj2000.j2k.codestream.writer.PktEncoder
-
The encoder specs
- wp - Variable in class jj2000.j2k.entropy.encoder.PostCompRateAllocator
-
The source of entropy coded data
- write(int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- write(byte[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- write(byte[]) - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
-
- write(byte[], int, int) - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
-
- write(int) - Method in class com.sun.media.imageioimpl.plugins.clib.OutputStreamAdapter
-
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- write(boolean, boolean, IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Writes any extension blocks, the Image Descriptor, the image data,
and optionally the header (Signature and Logical Screen Descriptor)
and trailer (Block Terminator).
- write(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.Box
-
Writes this box instance into a
ImageOutputStream.
- write(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Throws an
IOException as writing is not supported.
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- write(IIOMetadata, IIOImage, ImageWriteParam, boolean, boolean) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- write(IIOMetadata, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageWriter
-
- write(int) - Method in class jj2000.j2k.entropy.encoder.ByteOutputBuffer
-
Writes the specified byte to this byte array output stream.
- write(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Writes a byte to the stream.
- write(byte) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Writes a byte to the stream.
- write(byte[], int, int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Writes aan array of bytes to the stream.
- write(int) - Method in interface jj2000.j2k.io.RandomAccessIO
-
Writes a byte to the stream.
- write(int) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Throws an IOException since this class does not implement data output.
- write(int, int) - Method in class loci.formats.codec.BitWriter
-
Deprecated.
Writes the given value using the given number of bits.
- write(String) - Method in class loci.formats.codec.BitWriter
-
Deprecated.
Writes the bits represented by a bit string to the buffer.
- write(Kryo, Output) - Method in class loci.formats.services.NetCDFServiceImpl
-
- write(char[], int, int) - Method in class loci.plugins.config.TextAreaWriter
-
Writes the given characters to the associated text area component.
- write1Bit() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- write4Bit() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- write8Bit() - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- WRITE_ABORTED - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageWriter
-
When the writing is aborted,
RenderedImageSrc throws a
RuntimeException.
- writeAbbreviatedStream - Variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor
-
Whether to write abbreviated JPEG streams (default == false).
- writeAborted(ImageWriter) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter.IIOWriteProgressAdapter
-
- writeApplicationExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeArraySlice(String, MDByteArray, long[]) - Method in interface loci.formats.services.JHDFService
-
Writes an array as sub-slice into an existing HDF5 dataset
- writeArraySlice(String, MDShortArray, long[]) - Method in interface loci.formats.services.JHDFService
-
Writes an array as sub-slice into an existing HDF5 dataset
- writeArraySlice(String, MDIntArray, long[]) - Method in interface loci.formats.services.JHDFService
-
Writes an array as sub-slice into an existing HDF5 dataset
- writeArraySlice(String, MDByteArray, long[]) - Method in class loci.formats.services.JHDFServiceImpl
-
- writeArraySlice(String, MDShortArray, long[]) - Method in class loci.formats.services.JHDFServiceImpl
-
- writeArraySlice(String, MDIntArray, long[]) - Method in class loci.formats.services.JHDFServiceImpl
-
- writeAtom(int, String) - Method in class loci.formats.out.QTWriter
-
Write the atom length and type.
- writeBit(int) - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Writes a bit to the buffer at the current position.
- writeBit(int) - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
Write a bit to the output.
- writeBits(int, int) - Method in class com.sun.media.imageioimpl.common.BitFile
-
- writeBits(int, int) - Method in class jj2000.j2k.codestream.writer.BitOutputBuffer
-
Writes the n least significant bits of 'bits' to the buffer at the
current position.
- writeBits(int[], int) - Method in class jj2000.j2k.entropy.encoder.BitToByteOutput
-
Writes to the bit stream the symbols contained in the 'symbuf'
buffer.
- writeBlocks(byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeBox(IIOMetadataNode) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
- writeBox - Variable in class loci.formats.codec.JPEG2000CodecOptions
-
Whether or not to write a boxed stream, i.e.
- writeByte(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Throws an
IOException as writing is not supported.
- writeByte(ImageOutputStream, byte) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
Writes a byte to the output in ASCII format.
- writeByte(int) - Method in interface jj2000.j2k.io.BinaryDataOutput
-
Should write the byte value of v (i.e., 8 least
significant bits) to the output.
- writeByte(int) - Method in class jj2000.j2k.io.BufferedRandomAccessFile
-
Writes the byte value of v (i.e., 8 least
significant bits) to the output.
- writeByte(int) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Throws an IOException since this class does not implement data output.
- writeChars(char[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- writeCOC(boolean, int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes COC marker segment .
- writeCOD(boolean, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes COD marker segment.
- writeCodeStreamOnly - Variable in class com.sun.media.imageio.plugins.jpeg2000.J2KImageWriteParam
-
Specifies whether write only the jpeg2000 code stream, i.e, no any
box is written.
- writeCOM() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Write a COM marker segment adding some comments to the codestream.
- writeCommentExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeCompPosResLy(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Write a piece of bit stream according to the
COMP_POS_RES_LY_PROG progression mode and between given bounds
- writeContiguousCodeStreamBox() - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
This method writes the Contiguous codestream box
- writeData(String, CoreMetadata, String, OMETiffWriter) - Method in class loci.formats.tools.MakeTestOmeTiff
-
- writeDouble(double) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Throws an
IOException as writing is not supported.
- writeDouble(double) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Writes the IEEE double value v (i.e., 64 bits) to the
output.
- writeDouble(double) - Method in interface jj2000.j2k.io.BinaryDataOutput
-
Should write the IEEE double value v (i.e., 64 bits)
to the output.
- writeDouble(double) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Throws an IOException since this class does not implement data output.
- writeDoubles(double[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- writeEmbedded(IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- writeFCTL(int, int) - Method in class loci.formats.out.APNGWriter
-
- writeFileFormat() - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
This method reads the codestream and writes the file format wrapper and
the codestream to the same file
- writeFileHeader(int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- writeFloat(float) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Throws an
IOException as writing is not supported.
- writeFloat(float) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Writes the IEEE float value v (i.e., 32 bits) to the
output.
- writeFloat(float) - Method in interface jj2000.j2k.io.BinaryDataOutput
-
Should write the IEEE float value v (i.e., 32 bits) to
the output.
- writeFloat(float) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Throws an IOException since this class does not implement data output.
- writeFloats(float[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- writeFooter() - Method in class loci.formats.out.APNGWriter
-
- writeFooter() - Method in class loci.formats.out.JavaWriter
-
- writeFooter() - Method in class loci.formats.out.QTWriter
-
- writeGraphicControlExtension(int, boolean, boolean, int, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeGraphicControlExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeHeader(String, int, int, int, int, int, boolean, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeHeader(IIOMetadata, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeHeader() - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- writeHeader() - Method in class loci.formats.out.EPSWriter
-
- writeHeader() - Method in class loci.formats.out.JavaWriter
-
- writeHeader() - Method in class loci.formats.tiff.TiffSaver
-
Writes the TIFF file header.
- writeIFD(IFD, long) - Method in class loci.formats.tiff.TiffSaver
-
- writeIFDStrips(IFD, int, byte[][], int, boolean, int, int, long) - Method in class loci.formats.tiff.TiffSaver
-
- writeIFDValue(RandomAccessOutputStream, long, int, Object) - Method in class loci.formats.tiff.TiffSaver
-
Writes the given IFD value to the given output object.
- writeImage(RenderedImage, GIFWritableImageMetadata, ImageWriteParam, byte[], Rectangle, Dimension) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Writes any extension blocks, the Image Descriptor, and the image data
- writeImage(OutputStream, BufferedImage, JPEG2000CodecOptions) - Method in interface loci.formats.services.JAIIIOService
-
Writes an image using JAI Image I/O using the JPEG 2000 codec.
- writeImage(OutputStream, BufferedImage, JPEG2000CodecOptions) - Method in class loci.formats.services.JAIIIOServiceImpl
-
- writeImage(byte[][], IFDList, int) - Method in class loci.formats.tiff.TiffSaver
-
- writeImage(byte[], IFD, int, int, boolean) - Method in class loci.formats.tiff.TiffSaver
-
- writeImage(byte[], IFD, int, int, int, int, int, int, boolean) - Method in class loci.formats.tiff.TiffSaver
-
Writes to any rectangle from the passed block.
- writeImage(byte[], IFD, int, int, int, int, int, int, boolean, Integer, boolean) - Method in class loci.formats.tiff.TiffSaver
-
- writeImageDescriptor(int, int, int, int, boolean, boolean, int, byte[]) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeImageDescriptor(GIFWritableImageMetadata, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeImageIFD(IFD, int, byte[][], int, boolean, int, int) - Method in class loci.formats.tiff.TiffSaver
-
Performs the actual work of dealing with IFD data and writing it to the
TIFF for a given image or sub-image.
- writeInfoHeader(int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- writeInsert(int, IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- writeInt(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Throws an
IOException as writing is not supported.
- writeInt(int) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Writes the int value of v (i.e., the 32 bits) to the
output.
- writeInt(int) - Method in interface jj2000.j2k.io.BinaryDataOutput
-
Should write the int value of v (i.e., the 32 bits) to
the output.
- writeInt(int) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Throws an IOException since this class does not implement data output.
- writeInteger(ImageOutputStream, int) - Method in class com.sun.media.imageioimpl.plugins.pnm.PNMImageWriter
-
Writes an integer to the output in ASCII format.
- writeInts(int[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- writeIntValue(RandomAccessOutputStream, long) - Method in class loci.formats.tiff.TiffSaver
-
Write the given value to the given RandomAccessOutputStream.
- writeLong(long) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Throws an
IOException as writing is not supported.
- writeLong(long) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Writes the long value of v (i.e., the 64 bits) to the
output.
- writeLong(long) - Method in interface jj2000.j2k.io.BinaryDataOutput
-
Should write the long value of v (i.e., the 64 bits)
to the output.
- writeLong(long) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Throws an IOException since this class does not implement data output.
- writeLongs(long[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- writeLyResCompPos(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Write a piece of bit stream according to the
LY_RES_COMP_POS_PROG progression mode and between given bounds
- writeMainQCC(int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes QCC marker segment in main header.
- writeMainQCD() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes QCD marker segment in main header.
- writeMaskToPalette(int, int, byte[], byte[], byte[], byte[]) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- writeMetadata(J2KMetadata) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
- writeNewCodestream(BufferedRandomAccessFile) - Method in class jj2000.j2k.util.CodestreamManipulator
-
This method writes the new codestream to the file.
- writePacketBody(byte[], int, boolean, boolean, int) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Writes a packet body to the bit stream and returns the number of bytes
used by this body .If in simulation mode then no data is written to the
bit stream but the number of bytes is calculated.
- writePacketBody(byte[], int, boolean, boolean, int) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Writes a packet body to the bit stream and returns the number of bytes
used by this body .If in simulation mode then no data is written to the
bit stream but the number of bytes is calculated.
- writePacketHead(byte[], int, boolean, boolean, boolean) - Method in class jj2000.j2k.codestream.writer.CodestreamWriter
-
Writes a packet head to the bit stream and returns the number of bytes
used by this header.
- writePacketHead(byte[], int, boolean, boolean, boolean) - Method in class jj2000.j2k.codestream.writer.FileCodestreamWriter
-
Writes a packet head to the bit stream and returns the number of bytes
used by this header.
- writePixels(int, int, int, int[], int, int, IndexColorModel) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- writePixels(String, byte[], int, int, int, int) - Method in class loci.formats.out.APNGWriter
-
- writePlainTextExtension(GIFWritableImageMetadata) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writePlane(String, byte[], int, int) - Method in class loci.formats.out.JavaWriter
-
- writePlane(String, short[], int, int) - Method in class loci.formats.out.JavaWriter
-
- writePlane(String, int[], int, int) - Method in class loci.formats.out.JavaWriter
-
- writePlane(String, long[], int, int) - Method in class loci.formats.out.JavaWriter
-
- writePlane(String, float[], int, int) - Method in class loci.formats.out.JavaWriter
-
- writePlane(String, double[], int, int) - Method in class loci.formats.out.JavaWriter
-
- writePLTE() - Method in class loci.formats.out.APNGWriter
-
- writePOC(boolean, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes POC marker segment.
- writePosCompResLy(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Write a piece of bit stream according to the
COMP_POS_RES_LY_PROG progression mode and between given bounds
- writer - Variable in class com.sun.media.imageio.plugins.tiff.TIFFCompressor
-
The
ImageWriter calling this
TIFFCompressor.
- writer - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
Used to process abortion.
- writer - Variable in class loci.formats.gui.DataConverter
-
- writer - Variable in class loci.formats.WriterWrapper
-
FormatWriter used to write the file.
- writeRaster - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
Indicates a
raster rather than a RenderedImage
to be encoded.
- writeRaster(Raster) - Method in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
- writeRasterData(RenderedImage, Rectangle, Dimension, ImageWriteParam, boolean) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writerClassName - Static variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriterSpi
-
- writerClassName - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriterSpi
-
- writeResLyCompPos(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Write a piece of bit stream according to the
RES_LY_COMP_POS_PROG progression mode and between given bounds
- writeResPosCompLy(int, int, int, int, int, int[][], int) - Method in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
Write a piece of bit stream according to the
RES_POS_COMP_LY_PROG progression mode and between given bounds
- writeRGN(int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes the RGN marker segment in the tile header.
- writeRLE(int, int) - Method in class com.sun.media.imageioimpl.plugins.pcx.PCXImageWriter
-
- writeRotationMatrix() - Method in class loci.formats.out.QTWriter
-
Write the 3x3 matrix that describes how to rotate the image.
- writeRows(RenderedImage, LZWCompressor, int, int, int, int, int, int, int, int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeRowsOpt(byte[], int, int, LZWCompressor, int, int, int, int, int, int) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writers - Variable in class loci.formats.ImageWriter
-
List of supported file format writers.
- writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.bmp.BMPImageReaderSpi
-
- writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReaderSpi
-
- writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReaderSpi
-
- writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.pnm.PNMImageReaderSpi
-
- writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.raw.RawImageReaderSpi
-
- writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageReaderSpi
-
- writerSpiNames - Static variable in class com.sun.media.imageioimpl.plugins.wbmp.WBMPImageReaderSpi
-
- WriterWrapper - Class in loci.formats
-
Abstract superclass of writer logic that wraps other writers.
- WriterWrapper() - Constructor for class loci.formats.WriterWrapper
-
Constructs a writer wrapper around a new image writer.
- WriterWrapper(IFormatWriter) - Constructor for class loci.formats.WriterWrapper
-
Constructs a writer wrapper around the given writer.
- writeShort(int) - Method in class com.sun.media.imageioimpl.plugins.jpeg2000.IISRandomAccessIO
-
Throws an
IOException as writing is not supported.
- writeShort(int) - Method in class jj2000.j2k.io.BEBufferedRandomAccessFile
-
Writes the short value of v (i.e., 16 least significant bits)
to the output.
- writeShort(int) - Method in interface jj2000.j2k.io.BinaryDataOutput
-
Should write the short value of v (i.e., 16 least
significant bits) to the output.
- writeShort(int) - Method in class jj2000.j2k.util.ISRandomAccessIO
-
Throws an IOException since this class does not implement data output.
- writeShorts(short[], int, int) - Method in class com.sun.media.imageio.stream.FileChannelImageOutputStream
-
- writeSIZ() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes SIZ marker segment of the codestream header.
- writeSize(int, int) - Method in class com.sun.media.imageioimpl.plugins.bmp.BMPImageWriter
-
- writeSOC() - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Start Of Codestream marker (SOC) signalling the beginning of a
codestream.
- writeString(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWDecompressor
-
Write out the string just uncompressed.
- writeString(byte[]) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFLZWUtil
-
Write out the string just uncompressed.
- writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.ContainerRecord
-
- writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.FloatIM3Record
-
- writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.IM3Record
-
Write a summary of the contents of the record
- writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.IntIM3Record
-
- writeSummary(IRandomAccess, String) - Method in class loci.formats.in.IM3Reader.StringIM3Record
-
- writeSummary() - Method in class loci.formats.in.IM3Reader
-
Write a summary of each field in the IM3 file to the writer
- writeSuperBox(IIOMetadataNode) - Method in class jj2000.j2k.fileformat.writer.FileFormatWriter
-
- writeTIFFFieldToStream(TIFFField, ImageOutputStream) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- writeTile(Rectangle, TIFFCompressor) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- writeTileQCC(int, int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes QCC marker segment in tile header.
- writeTileQCD(int) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes QCD marker segment in tile header.
- writeTime - Variable in class jj2000.j2k.entropy.encoder.EBCOTRateAllocator
-
The wall time for the writing of layers.
- writeTo(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFBaseJPEGCompressor.IIOByteArrayOutputStream
-
- writeTo(BinaryDataOutput) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes the header to the specified BinaryDataOutput.
- writeTo(OutputStream) - Method in class jj2000.j2k.codestream.writer.HeaderEncoder
-
Writes the header to the specified OutputStream.
- writeToSequence(IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- writeToSequence(IIOImage, ImageWriteParam) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
- writeToStream(ImageOutputStream) - Method in class com.sun.media.imageioimpl.plugins.tiff.TIFFIFD
-
- writeTrailer() - Method in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
- wroteSequenceHeader - Variable in class com.sun.media.imageioimpl.plugins.gif.GIFImageWriter
-
Whether the header has been written.
- wSize - Variable in class loci.formats.in.DeltavisionReader
-
Size of one wave in the extended header.
- WT_DECOMP_DYADIC - Static variable in class jj2000.j2k.wavelet.analysis.ForwardWT
-
ID for the dyadic wavelet tree decomposition (also called "Mallat" in
JPEG 2000): 0x00.
- WT_DECOMP_DYADIC - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
-
ID for the dyadic wavelet tree decomposition (also called
"Mallat" in JPEG 2000): 0x00.
- WT_DECOMP_PACKET - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
-
ID for the PACKET (as defined in JPEG 2000) wavelet tree
decomposition (2 levels of decomposition in the high bands and
some specified number for the lowest LL band): 0x01.
- WT_DECOMP_SPACL - Static variable in class jj2000.j2k.wavelet.WTDecompSpec
-
ID for the SPACL (as defined in JPEG 2000) wavelet tree
decomposition (1 level of decomposition in the high bands and
some specified number for the lowest LL band): 0x02.
- WT_FILTER_FLOAT_CONVOL - Static variable in interface jj2000.j2k.wavelet.WaveletFilter
-
The ID for floatring-poitn convolution implementations
- WT_FILTER_FLOAT_LIFT - Static variable in interface jj2000.j2k.wavelet.WaveletFilter
-
The ID for floating-point lifting spteps implementations
- WT_FILTER_INT_LIFT - Static variable in interface jj2000.j2k.wavelet.WaveletFilter
-
The ID for integer lifting spteps implementations
- WT_IMPL_FULL - Static variable in interface jj2000.j2k.wavelet.WaveletTransform
-
ID for full-page based implementations of wavelet transforms.
- WT_IMPL_LINE - Static variable in interface jj2000.j2k.wavelet.WaveletTransform
-
ID for line based implementations of wavelet transforms.
- WT_ORIENT_HH - Static variable in class jj2000.j2k.wavelet.Subband
-
The ID for the HH orientation
- WT_ORIENT_HL - Static variable in class jj2000.j2k.wavelet.Subband
-
The ID for the HL (horizontal high-pass) orientation
- WT_ORIENT_LH - Static variable in class jj2000.j2k.wavelet.Subband
-
The ID for the LH (vertical high-pass) orientation
- WT_ORIENT_LL - Static variable in class jj2000.j2k.wavelet.Subband
-
The ID for the LL orientation
- WTDecompSpec - Class in jj2000.j2k.wavelet
-
This class holds the decomposition type to be used in each part of the
image; the default one, the component specific ones, the tile default ones
and the component-tile specific ones.
- WTDecompSpec(int, int, int) - Constructor for class jj2000.j2k.wavelet.WTDecompSpec
-
Constructs a new 'WTDecompSpec' for the specified number of components
and tiles, with the given main default decomposition type and number of
levels.
- WTFilterSpec - Class in jj2000.j2k.wavelet
-
This is the generic class from which the ones that hold the analysis or
synthesis filters to be used in each part of the image derive.
- WTFilterSpec(int) - Constructor for class jj2000.j2k.wavelet.WTFilterSpec
-
Constructs a 'WTFilterSpec' object, initializing all the components and
tiles to the 'FILTER_SPEC_MAIN_DEF' spec type, for the specified number
of components and tiles.
X
- x - Variable in class jj2000.j2k.roi.encoder.ROI
-
x coordinate of center of circular ROI
- x - Variable in class loci.formats.in.BioRadReader.Note
-
- x - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo
-
- x - Variable in class loci.formats.in.InCellReader
-
- x - Variable in class loci.formats.in.LeicaHandler.ROI
-
- x - Variable in class loci.formats.in.LIFReader.ROI
-
- x - Variable in class loci.formats.in.OperettaReader.Plane
-
- x - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- x - Variable in class loci.formats.TileStitcher.TileCoordinate
-
- x0 - Variable in class loci.formats.tools.AmiraParameters
-
- x0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- x0siz - Variable in class jj2000.j2k.image.Tiler
-
Horizontal coordinate of the upper left hand reference grid point.
- x1 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- x1 - Variable in class loci.formats.tools.AmiraParameters
-
- x2 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- X_BINNING - Static variable in class loci.formats.in.CellSensReader
-
- X_IMG_STRING - Static variable in class loci.formats.in.SDTInfo
-
- X_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- X_POS_TAG - Static variable in class loci.formats.in.SlidebookTiffReader
-
- X_POSITION - Static variable in class loci.formats.tiff.IFD
-
- X_RESOLUTION - Static variable in class loci.formats.tiff.IFD
-
- X_STRING - Static variable in class loci.formats.in.SDTInfo
-
- xAxis - Variable in class loci.formats.in.SDTInfo
-
X axis representation (SPC-930).
- xcal - Variable in class loci.formats.in.OpenlabReader
-
- xCoordinates - Variable in class loci.formats.in.ZeissLSMReader
-
- xcrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG
-
- xDim - Variable in class loci.formats.out.AVIWriter
-
- xIndex - Variable in class loci.formats.in.TextReader
-
Column index for X coordinate.
- xLen - Variable in class loci.formats.in.LiFlimReader
-
- xLocation - Variable in class loci.formats.in.VolocityReader.Stack
-
- xmax - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- xmin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- XML - Static variable in class loci.formats.in.MicromanagerReader
-
Optional file containing additional acquisition parameters.
- xml - Variable in class loci.formats.in.ZeissCZIReader.Metadata
-
- xml - Variable in class loci.plugins.util.DataBrowser
-
- XML_BOX - Static variable in interface jj2000.j2k.fileformat.FileFormatBoxes
-
- XML_FILE - Static variable in class loci.formats.in.ColumbusReader
-
- XML_FILE - Static variable in class loci.formats.in.OperettaReader
-
- XML_FILE - Static variable in class loci.formats.in.ScanrReader
-
- XML_NAME - Static variable in class loci.formats.in.ZeissTIFFReader
-
- XML_SUFFIX - Static variable in class loci.formats.in.PrairieReader
-
- XML_SUFFIX - Static variable in class loci.formats.in.TCSReader
-
- XML_TAG - Static variable in class loci.formats.in.ImaconReader
-
- XML_TAG - Static variable in class loci.formats.in.OperettaReader
-
- XMLBox - Class in com.sun.media.imageioimpl.plugins.jpeg2000
-
This class is defined to represent a XML box of JPEG JP2
file format.
- XMLBox(byte[]) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox
-
Create a Box from its content.
- XMLBox(Node) - Constructor for class com.sun.media.imageioimpl.plugins.jpeg2000.XMLBox
-
Constructs a
UUIDListBox based on the provided
org.w3c.dom.Node.
- xmlBuffer - Variable in class loci.formats.in.OMEXMLReader.OMEXMLHandler
-
- XMLCellRenderer - Class in loci.formats.gui
-
A tree cell renderer for displaying syntax highlighted XML in a JTree.
- XMLCellRenderer() - Constructor for class loci.formats.gui.XMLCellRenderer
-
- XMLCellRenderer.XMLItem - Class in loci.formats.gui
-
Cell renderer item for use as DefaultMutableTreeNode user object.
- xmlFile - Variable in class loci.formats.in.MicromanagerReader.Position
-
- xmlFile - Variable in class loci.formats.in.PrairieReader
-
The associated XML files.
- xmlFile - Variable in class loci.formats.in.TCSReader
-
- xmlFiles - Variable in class loci.formats.in.APLReader
-
- xmlFragments - Variable in class loci.formats.out.OMEXMLWriter
-
- XMLItem(Node) - Constructor for class loci.formats.gui.XMLCellRenderer.XMLItem
-
- xmlname - Variable in class loci.formats.in.ZeissTIFFReader.TIFFInfo
-
- XMLWindow - Class in loci.formats.gui
-
A window containing syntax highlighted XML as a tree.
- XMLWindow() - Constructor for class loci.formats.gui.XMLWindow
-
- XMLWindow(String) - Constructor for class loci.formats.gui.XMLWindow
-
- xmlWindow - Variable in class loci.plugins.in.DisplayHandler
-
- Xn - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- xoff - Variable in class loci.formats.tools.MakeTestOmeTiff.TextLine
-
- xOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Source to destination transform
- xOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The source -> destination transformation
- xOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The source -> destination transformation
- xOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
The subsampling parameters.
- xOffset - Variable in class loci.formats.in.NativeND2Reader
-
- xor(int) - Method in class loci.plugins.util.RecordedImageProcessor
-
- xOrigin - Variable in class loci.formats.in.TiffReader
-
- xPad - Variable in class loci.formats.out.AVIWriter
-
- xpixels - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo
-
- xPixelsPerMeter - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- xPos - Variable in class loci.formats.in.LeicaHandler
-
- xPos - Variable in class loci.formats.in.OpenlabReader
-
- XPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XPosition
-
- xPositions - Variable in class loci.formats.in.FlexReader
-
- xQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The x position of the last code block before ncb quit reached
- xref - Variable in class jj2000.j2k.codestream.PrecCoordInfo
-
Horizontal upper left coordinate in the reference grid
- XResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.XResolution
-
- xrsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- xsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- xSize - Variable in class loci.formats.in.LEOReader
-
- xSize - Variable in class loci.formats.in.QuesantReader
-
- xSizes - Variable in class loci.formats.in.FlexReader
-
- XSLT_2003FC - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_200706 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_200802 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_200809 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_200909 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_201004 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_201006 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_201106 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_201206 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_201306 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_201501 - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- XSLT_PATH - Static variable in class loci.formats.services.OMEXMLServiceImpl
-
- xt0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- xt0siz - Variable in class jj2000.j2k.image.Tiler
-
The horizontal coordinate of the tiling origin in the canvas system,
on the reference grid.
- xTiles - Variable in class loci.formats.in.DeltavisionReader
-
Number of tiles in X direction.
- xTiles - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- XToTileX(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a pixel's X coordinate into a horizontal tile index
relative to a given tile grid layout specified by its X offset
and tile width.
- XToTileX(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a pixel's X coordinate into a horizontal tile index.
- XToTileX(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Converts a pixel's X coordinate into a horizontal tile index
relative to a given tile grid layout specified by its X offset
and tile width.
- xtsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- xtsiz - Variable in class jj2000.j2k.image.Tiler
-
The nominal width of the tiles, on the reference grid.
- xyGain - Variable in class loci.formats.in.SDTInfo
-
Gain for XY ADCs (SPC930).
- xyw(CellConstraints, int, int, int) - Method in class loci.plugins.in.MainDialog
-
Convenience method for creating a left-aligned,
vertically centered cell constraints object.
Y
- y - Variable in class jj2000.j2k.roi.encoder.ROI
-
y coordinate of center of circular ROI
- y - Variable in class loci.formats.in.BioRadReader.Note
-
- y - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo
-
- y - Variable in class loci.formats.in.InCellReader
-
- y - Variable in class loci.formats.in.LeicaHandler.ROI
-
- y - Variable in class loci.formats.in.LIFReader.ROI
-
- y - Variable in class loci.formats.in.OperettaReader.Plane
-
- y - Variable in class loci.formats.in.ZeissCZIReader.SubBlock
-
- y - Variable in class loci.formats.TileStitcher.TileCoordinate
-
- y0 - Variable in class loci.formats.tools.AmiraParameters
-
- y0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- y0siz - Variable in class jj2000.j2k.image.Tiler
-
Vertical coordinate of the upper left hand reference grid point.
- y1 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- y1 - Variable in class loci.formats.tools.AmiraParameters
-
- y2 - Variable in class loci.formats.in.BaseZeissReader.Shape
-
- Y8 - Static variable in class loci.formats.in.AVIReader
-
- Y_BINNING - Static variable in class loci.formats.in.CellSensReader
-
- Y_CB_CR_COEFFICIENTS - Static variable in class loci.formats.tiff.IFD
-
- Y_CB_CR_POSITIONING - Static variable in class loci.formats.tiff.IFD
-
- Y_CB_CR_POSITIONING_CENTERED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "YCbCrPositioning" tag.
- Y_CB_CR_POSITIONING_COSITED - Static variable in class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet
-
A value to be used with the "YCbCrPositioning" tag.
- Y_CB_CR_SUB_SAMPLING - Static variable in class loci.formats.tiff.IFD
-
- Y_DIMENSION_UNIT - Static variable in class loci.formats.in.CellSensReader
-
- Y_IMG_STRING - Static variable in class loci.formats.in.SDTInfo
-
- Y_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- Y_PLANE_DIMENSION_UNIT - Static variable in class loci.formats.in.CellSensReader
-
- Y_POS_TAG - Static variable in class loci.formats.in.SlidebookTiffReader
-
- Y_POSITION - Static variable in class loci.formats.tiff.IFD
-
- Y_RESOLUTION - Static variable in class loci.formats.tiff.IFD
-
- Y_STRING - Static variable in class loci.formats.in.SDTInfo
-
- ycal - Variable in class loci.formats.in.OpenlabReader
-
- ycbcr - Variable in class loci.formats.codec.CodecOptions
-
Whether or not the decompressed data will be stored as YCbCr.
- YCbCrCoefficients() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrCoefficients
-
- ycbcrCorrection - Variable in class loci.formats.tiff.TiffParser
-
- YCbCrPositioning() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrPositioning
-
- YCbCrSubSampling() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YCbCrSubSampling
-
- yCoordinates - Variable in class loci.formats.in.ZeissLSMReader
-
- ycrg - Variable in class jj2000.j2k.codestream.HeaderInfo.CRG
-
- yDim - Variable in class loci.formats.out.AVIWriter
-
- YEAR - Static variable in class loci.formats.FormatTools
-
Year in which this release was built.
- yIndex - Variable in class loci.formats.in.TextReader
-
Column index for Y coordinate.
- yLen - Variable in class loci.formats.in.LiFlimReader
-
- yLocation - Variable in class loci.formats.in.VolocityReader.Stack
-
- ymax - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXImageReader
-
- ymin - Variable in class com.sun.media.imageioimpl.plugins.pcx.PCXMetadata
-
- Yn - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- yOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
-
Source to destination transform
- yOffset - Variable in class com.sun.media.imageioimpl.plugins.jpeg2000.RenderedImageSrc
-
The source -> destination transformation
- yOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawImageWriter
-
The source -> destination transformation
- yOffset - Variable in class com.sun.media.imageioimpl.plugins.raw.RawRenderedImage
-
The subsampling parameters.
- yOffset - Variable in class loci.formats.in.NativeND2Reader
-
- yOrigin - Variable in class loci.formats.in.TiffReader
-
- ypad - Variable in class loci.formats.tools.MakeTestOmeTiff.TextLine
-
- ypixels - Variable in class loci.formats.in.CellVoyagerReader.FieldInfo
-
- yPixelsPerMeter - Variable in class com.sun.media.imageioimpl.plugins.bmp.BMPMetadata
-
- yPos - Variable in class loci.formats.in.LeicaHandler
-
- yPos - Variable in class loci.formats.in.OpenlabReader
-
- YPosition() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YPosition
-
- yPositions - Variable in class loci.formats.in.FlexReader
-
- yQuit - Variable in class jj2000.j2k.codestream.reader.PktDecoder
-
The y position of the last code block before ncb quit reached
- yref - Variable in class jj2000.j2k.codestream.PrecCoordInfo
-
Vertical upper left coordinate on the reference grid
- YResolution() - Constructor for class com.sun.media.imageio.plugins.tiff.BaselineTIFFTagSet.YResolution
-
- yrsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- ysiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- ySizes - Variable in class loci.formats.in.FlexReader
-
- yt0siz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- yt0siz - Variable in class jj2000.j2k.image.Tiler
-
The vertical coordinate of the tiling origin in the canvas system, on
the reference grid.
- yTiles - Variable in class loci.formats.in.DeltavisionReader
-
Number of tiles in Y direction.
- yTiles - Variable in class loci.formats.services.JPEGTurboServiceImpl
-
- YToTileY(int, int, int) - Static method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a pixel's Y coordinate into a vertical tile index
relative to a given tile grid layout specified by its Y offset
and tile height.
- YToTileY(int) - Method in class com.sun.media.imageioimpl.common.SimpleRenderedImage
-
Converts a pixel's Y coordinate into a vertical tile index.
- YToTileY(int, int, int) - Static method in class com.sun.media.imageioimpl.plugins.tiff.TIFFImageWriter
-
Converts a pixel's Y coordinate into a vertical tile index
relative to a given tile grid layout specified by its Y offset
and tile height.
- ytsiz - Variable in class jj2000.j2k.codestream.HeaderInfo.SIZ
-
- ytsiz - Variable in class jj2000.j2k.image.Tiler
-
The nominal height of the tiles, on the reference grid.
- yy - Variable in class loci.formats.codec.JPEGTileDecoder.TileCache
-
- yy - Variable in class loci.formats.codec.JPEGTileDecoder.TileConsumer
-
Z
- Z - Static variable in class loci.formats.in.CellSensReader
-
- z - Variable in class loci.formats.in.LeicaSCNReader.Dimension
-
- z - Variable in class loci.formats.in.MicromanagerReader.Index
-
- z - Variable in class loci.formats.in.OperettaReader.Plane
-
- z0 - Variable in class loci.formats.tools.AmiraParameters
-
- z1 - Variable in class loci.formats.tools.AmiraParameters
-
- Z_AXIS - Static variable in class loci.formats.AxisGuesser
-
Axis type for focal planes.
- Z_INCREMENT - Static variable in class loci.formats.in.CellSensReader
-
- Z_KEY - Static variable in class loci.formats.in.LiFlimReader
-
- Z_NUM - Static variable in class loci.formats.FormatTools
-
- Z_POS_TAG - Static variable in class loci.formats.in.SlidebookTiffReader
-
- Z_PREFIXES - Static variable in class loci.formats.AxisGuesser
-
Prefixes indicating space dimension.
- Z_START - Static variable in class loci.formats.in.CellSensReader
-
- Z_VALUE - Static variable in class loci.formats.in.CellSensReader
-
- zBegin - Variable in class loci.plugins.in.ImporterOptions
-
- ZC_LUT_BITS - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Number of bits used for the Zero Coding lookup table
- ZC_LUT_BITS - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Number of bits used for the Zero Coding lookup table
- ZC_LUT_HH - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Zero Coding context lookup tables for the HH global orientation
- ZC_LUT_HH - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Zero Coding context lookup tables for the HH global orientation
- ZC_LUT_HL - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Zero Coding context lookup tables for the HL global orientation
- ZC_LUT_HL - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Zero Coding context lookup tables for the HL global orientation
- ZC_LUT_LH - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
Zero Coding context lookup tables for the LH global orientation
- ZC_LUT_LH - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
Zero Coding context lookup tables for the LH global orientation
- ZC_MASK - Static variable in class jj2000.j2k.entropy.decoder.StdEntropyDecoder
-
The mask to obtain the ZC_LUT index from the 'state' information
- ZC_MASK - Static variable in class jj2000.j2k.entropy.encoder.StdEntropyCoder
-
The mask to obtain the ZC_LUT index from the state information
- zChoice - Variable in class loci.formats.gui.DataConverter
-
- zChoice - Variable in class loci.plugins.in.SwapDialog
-
- zCoordinates - Variable in class loci.formats.in.ZeissLSMReader
-
- zctLabel - Variable in class loci.formats.gui.PreviewPane
-
Labels containing thumbnail and dimensional information.
- zctText - Variable in class loci.formats.gui.PreviewPane
-
- zctTip - Variable in class loci.formats.gui.PreviewPane
-
- zDim - Variable in class loci.formats.out.AVIWriter
-
- zDistances - Variable in class loci.formats.in.MetamorphReader
-
- ZEISS_ID - Static variable in class loci.formats.in.ZeissLSMReader
-
Tag identifying a Zeiss LSM file.
- ZeissCZIReader - Class in loci.formats.in
-
ZeissCZIReader is the file format reader for Zeiss .czi files.
- ZeissCZIReader() - Constructor for class loci.formats.in.ZeissCZIReader
-
Constructs a new Zeiss .czi reader.
- ZeissCZIReader.Attachment - Class in loci.formats.in
-
Segment with ID "ZISRAWATTACH".
- ZeissCZIReader.AttachmentDirectory - Class in loci.formats.in
-
Segment with ID "ZISRAWATTDIR".
- ZeissCZIReader.AttachmentEntry - Class in loci.formats.in
-
- ZeissCZIReader.Channel - Class in loci.formats.in
-
- ZeissCZIReader.Coordinate - Class in loci.formats.in
-
- ZeissCZIReader.DimensionEntry - Class in loci.formats.in
-
- ZeissCZIReader.Directory - Class in loci.formats.in
-
Segment with ID "ZISRAWDIRECTORY".
- ZeissCZIReader.DirectoryEntry - Class in loci.formats.in
-
- ZeissCZIReader.FileHeader - Class in loci.formats.in
-
Segment with ID "ZISRAWFILE".
- ZeissCZIReader.Metadata - Class in loci.formats.in
-
Segment with ID "ZISRAWMETADATA".
- ZeissCZIReader.Segment - Class in loci.formats.in
-
Top-level class that implements logic common to all types of Segment.
- ZeissCZIReader.SubBlock - Class in loci.formats.in
-
Segment with ID "ZISRAWSUBBLOCK".
- ZeissCZIWidgets - Class in loci.plugins.config
-
Custom widgets for configuring Bio-Formats Zeiss CZI support.
- ZeissCZIWidgets() - Constructor for class loci.plugins.config.ZeissCZIWidgets
-
- ZeissLMSReader - Class in loci.formats.in
-
Zeiss LMS reader for data from Zeiss CSM 700 systems.
- ZeissLMSReader() - Constructor for class loci.formats.in.ZeissLMSReader
-
Constructs a new LMS reader.
- ZeissLSMReader - Class in loci.formats.in
-
ZeissLSMReader is the file format reader for Zeiss LSM files.
- ZeissLSMReader() - Constructor for class loci.formats.in.ZeissLSMReader
-
Constructs a new Zeiss LSM reader.
- ZeissLSMReader.BeamSplitter - Class in loci.formats.in
-
- ZeissLSMReader.DataChannel - Class in loci.formats.in
-
- ZeissLSMReader.DetectionChannel - Class in loci.formats.in
-
- ZeissLSMReader.IlluminationChannel - Class in loci.formats.in
-
- ZeissLSMReader.Laser - Class in loci.formats.in
-
- ZeissLSMReader.Marker - Class in loci.formats.in
-
- ZeissLSMReader.Recording - Class in loci.formats.in
-
- ZeissLSMReader.SubBlock - Class in loci.formats.in
-
- ZeissLSMReader.Timer - Class in loci.formats.in
-
- ZeissLSMReader.Track - Class in loci.formats.in
-
- ZeissTIFFHandler - Class in loci.formats.in
-
SAX handler for parsing XML in Zeiss TIFF files.
- ZeissTIFFHandler(ZeissTIFFReader) - Constructor for class loci.formats.in.ZeissTIFFHandler
-
- ZeissTIFFHandler.Plane - Class in loci.formats.in
-
Metadata for a single image plane.
- ZeissTIFFHandler.Scaling - Class in loci.formats.in
-
Scaling metadata.
- ZeissTIFFHandler.Scaling.Dimension - Class in loci.formats.in
-
Scaling information for a single dimension.
- ZeissTIFFHandler.Tag - Class in loci.formats.in
-
Content of a single tag from a Tags block.
- ZeissTIFFHandler.TagSet - Class in loci.formats.in
-
A collection of tags from a single Tags block.
- ZeissTIFFReader - Class in loci.formats.in
-
ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF
files and their companion XML file.
- ZeissTIFFReader() - Constructor for class loci.formats.in.ZeissTIFFReader
-
- ZeissTIFFReader.Channel - Class in loci.formats.in
-
- ZeissTIFFReader.Plane - Class in loci.formats.in
-
- ZeissTIFFReader.Slice - Class in loci.formats.in
-
- ZeissTIFFReader.TIFFInfo - Class in loci.formats.in
-
- ZeissTIFFReader.Timepoint - Class in loci.formats.in
-
- ZeissZVIReader - Class in loci.formats.in
-
ZeissZVIReader is the file format reader for Zeiss ZVI files.
- ZeissZVIReader() - Constructor for class loci.formats.in.ZeissZVIReader
-
Constructs a new ZeissZVI reader.
- zEnd - Variable in class loci.plugins.in.ImporterOptions
-
- zeroes - Variable in class loci.formats.FilePatternBlock
-
The number of leading zeroes.
- zIndices - Variable in class loci.formats.in.BaseZeissReader
-
- ZIP - Static variable in class loci.formats.in.PhotoshopTiffReader
-
- ZipReader - Class in loci.formats.in
-
Reader for Zip files.
- ZipReader() - Constructor for class loci.formats.in.ZipReader
-
- zLabel - Variable in class loci.formats.gui.DataConverter
-
- zLen - Variable in class loci.formats.in.LiFlimReader
-
- ZlibCodec - Class in loci.formats.codec
-
This class implements ZLIB decompression.
- ZlibCodec() - Constructor for class loci.formats.codec.ZlibCodec
-
- zLocation - Variable in class loci.formats.in.VolocityReader.Stack
-
- zMapFile - Variable in class loci.formats.in.CellWorxReader
-
- Zn - Static variable in class com.sun.media.imageioimpl.plugins.tiff.TIFFCIELabColorConverter
-
- zOffset - Variable in class loci.formats.in.NativeND2Reader
-
- zoom - Variable in class loci.formats.in.LeicaHandler.Detector
-
- zoom - Variable in class loci.formats.in.LeicaHandler
-
- zoom - Variable in class loci.formats.in.MetamorphHandler
-
- zoom - Variable in class loci.formats.in.MetamorphReader
-
- zoom - Variable in class loci.formats.in.ZeissCZIReader
-
- zoom - Variable in class loci.formats.in.ZeissLSMReader
-
- zooms - Variable in class loci.formats.in.LIFReader
-
- ZPO_SUFFIX - Static variable in class loci.formats.in.PerkinElmerReader
-
- zPos - Variable in class loci.formats.in.LeicaHandler
-
- zPos - Variable in class loci.formats.in.OpenlabReader
-
- zPosition - Variable in class loci.formats.in.InCellReader.Image
-
- zPosition - Variable in class loci.formats.in.InCellReader.InCellHandler
-
- zPosition - Variable in class loci.formats.in.OpenlabReader.PlaneInfo
-
- zPositions - Variable in class loci.formats.in.FluoviewReader
-
- zPositions - Variable in class loci.formats.in.MetamorphHandler
-
- zs - Variable in class loci.formats.in.ND2Handler
-
- zScroll - Variable in class loci.plugins.util.DataBrowser
-
- zSize - Variable in class loci.formats.in.DeltavisionReader
-
Size of one z section in the extended header.
- zSlider - Variable in class loci.formats.gui.ImageViewer
-
- zStart - Variable in class loci.formats.in.MetamorphReader
-
- zStep - Variable in class loci.plugins.in.ImporterOptions
-
- zSteps - Variable in class loci.formats.in.LIFReader
-
- ZVI_MAGIC_BYTES - Static variable in class loci.formats.in.ZeissZVIReader
-
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z Copyright © 2017 Open Microscopy Environment
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