public class BFVirtualStack
extends ij.VirtualStack
Modifier and Type | Field and Description |
---|---|
protected Cache |
cache |
private float[] |
calibrationTable |
private boolean |
colorize |
private RecordedImageProcessor |
currentProcessor |
private int |
currentSlice |
protected String |
id |
private int[] |
len |
private boolean |
merge |
private List<List<RecordedImageProcessor.MethodEntry>> |
methodStacks |
private int[] |
planeIndexes |
protected ImageProcessorReader |
reader |
private boolean |
record |
private int |
series |
Constructor and Description |
---|
BFVirtualStack(String path,
IFormatReader r,
boolean colorize,
boolean merge,
boolean record) |
Modifier and Type | Method and Description |
---|---|
Cache |
getCache() |
int |
getHeight() |
protected static int |
getHeight(IFormatReader r,
String path,
int series) |
List<RecordedImageProcessor.MethodEntry> |
getMethodStack() |
String |
getPath() |
ij.process.ImageProcessor |
getProcessor(int n) |
ImageProcessorReader |
getReader() |
RecordedImageProcessor |
getRecordedProcessor() |
int |
getSize() |
int |
getWidth() |
protected static int |
getWidth(IFormatReader r,
String path,
int series) |
void |
setPlaneIndexes(int[] planeIndexes) |
addSlice, addSlice, addSlice, addSlice, deleteLastSlice, deleteSlice, getBitDepth, getDirectory, getFileName, getImageArray, getPixels, getSliceLabel, isVirtual, saveChanges, setBitDepth, setPixels, setSliceLabel, sortDicom, trim
addSlice, addUnsignedShortSlice, convertToFloat, create, crop, drawSphere, duplicate, getColorModel, getRoi, getShortSliceLabel, getSliceLabels, getVoxel, getVoxels, getVoxels, isHSB, isRGB, setColorModel, setProcessor, setRoi, setVoxel, setVoxels, setVoxels, toString, update
protected ImageProcessorReader reader
protected String id
protected Cache cache
private List<List<RecordedImageProcessor.MethodEntry>> methodStacks
private int currentSlice
private RecordedImageProcessor currentProcessor
private boolean colorize
private boolean merge
private boolean record
private int series
private int[] len
private int[] planeIndexes
private float[] calibrationTable
public BFVirtualStack(String path, IFormatReader r, boolean colorize, boolean merge, boolean record) throws FormatException, IOException, CacheException
FormatException
IOException
CacheException
protected static int getWidth(IFormatReader r, String path, int series) throws FormatException, IOException
FormatException
IOException
protected static int getHeight(IFormatReader r, String path, int series) throws FormatException, IOException
FormatException
IOException
public String getPath()
public ImageProcessorReader getReader()
public Cache getCache()
public RecordedImageProcessor getRecordedProcessor()
public List<RecordedImageProcessor.MethodEntry> getMethodStack()
public void setPlaneIndexes(int[] planeIndexes)
public ij.process.ImageProcessor getProcessor(int n)
getProcessor
in class ij.VirtualStack
public int getWidth()
getWidth
in class ij.ImageStack
public int getHeight()
getHeight
in class ij.ImageStack
public int getSize()
getSize
in class ij.VirtualStack
Copyright © 2017 Open Microscopy Environment