Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.in |
Package containing Bio-Formats file format readers.
|
Class and Description |
---|
MetadataLevel |
MetadataOptions |
Class and Description |
---|
AmiraReader.PlaneReader
This is the common interface for all formats, compressed or not.
|
APNGReader.PNGBlock |
APNGReader.PNGInputStream
InputStream implementation that stitches together IDAT blocks into
a seamless zlib stream.
|
BaseTiffReader
BaseTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
|
BaseZeissReader
BaseZeissReader contains common functionality required by
readers for Zeiss AxioVision formats.
|
BaseZeissReader.Charset |
BaseZeissReader.Context |
BaseZeissReader.DrawStyle
Line drawing styles.
|
BaseZeissReader.FeatureType
Feature types.
|
BaseZeissReader.FillStyle
Fill styles.
|
BaseZeissReader.Layer
Layer class representing an AxioVision layer; used to contain a
collection of shapes.
|
BaseZeissReader.LineEndPositions |
BaseZeissReader.LineEndStyle
Line ending styles.
|
BaseZeissReader.PointStyle
Point styles.
|
BaseZeissReader.Shape
Shape class representing the metadata within an AxioVision Shape ROI
|
BaseZeissReader.Tag
Content of a single tag from a Tags block.
|
BaseZeissReader.TextAlignment |
BIFormatReader
BIFormatReader is the superclass for file format readers
that use java.awt.image.BufferedImage as the native data type.
|
BioRadReader.Note |
BMPReader
BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
|
CellH5Reader.CellH5Coordinate |
CellSensReader.Pyramid |
CellSensReader.TileCoordinate |
CellVoyagerReader.AreaInfo |
CellVoyagerReader.ChannelInfo |
CellVoyagerReader.FieldInfo |
CellVoyagerReader.WellInfo |
DeltavisionReader.DVExtHdrFields
This private class structure holds the details for the extended header.
|
DicomReader
DicomReader is the file format reader for DICOM files.
|
FlexReader.FilterGroup
Stores a grouping of filters.
|
FlexReader.FlexFile |
FV1000Reader.ChannelData |
FV1000Reader.PlaneData |
IM3Reader.ContainerRecord |
IM3Reader.IM3Record |
IM3Reader.Spectrum |
ImageIOReader
ImageIOReader is the superclass for file format readers
that use the javax.imageio package.
|
InCellReader.Image |
LeicaHandler.Channel |
LeicaHandler.Detector |
LeicaHandler.Laser |
LeicaHandler.MultiBand |
LeicaHandler.ROI |
LeicaReader.Detector |
LeicaSCNReader.Dimension |
LeicaSCNReader.Image |
LeicaSCNReader.ImageCollection |
LeicaSCNReader.LeicaSCNHandler
SAX handler for parsing XML in Leica SCN files.
|
LeicaSCNReader.Pixels |
LiFlimReader.ROI |
LIFReader.ROI |
MetadataLevel |
MetadataOptions |
MetamorphHandler
MetamorphTiffReader is the file format reader for TIFF files produced by
Metamorph software version 7.5 and above.
|
MetamorphReader
Reader is the file format reader for Metamorph STK files.
|
MetamorphTiffReader.Well |
MIASReader.AnalysisFile |
MicromanagerReader.Index |
MicromanagerReader.Position |
MinimalTiffReader
MinimalTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
|
MNGReader.SeriesInfo |
ND2Handler
DefaultHandler implementation for handling XML produced by Nikon Elements.
|
OBFReader.Frame |
OBFReader.Stack |
OMETiffReader.OMETiffPlane
Structure containing details on where to find a particular image plane.
|
OMEXMLReader.BinData |
OpenlabReader.PlaneInfo
Helper class for storing plane info.
|
OperettaReader.Plane |
PerkinElmerReader.PixelsFile |
PictReader
PictReader is the file format reader for Apple PICT files.
|
PrairieMetadata
Metadata structure for Prairie Technologies' TIFF-based format.
|
PrairieMetadata.Frame
A Prairie
<Frame> , beneath a <Sequence> . |
PrairieMetadata.PFile
A Prairie
<File> beneath a <Frame> . |
PrairieMetadata.Sequence
A Prairie
<Sequence> . |
PrairieMetadata.Value
A value in a Prairie metadata dictionary.
|
PrairieMetadata.ValueTable
A table of values.
|
SDTInfo
SDTInfo encapsulates the header information for
Becker & Hickl SPC-Image SDT files.
|
SPEReader.SpeHeader
SpeHeader holds a byte array containing the SPE binary data header along
with associated methods for reading SPE Header Entry values in various formats
|
SPEReader.SpeHeaderEntry
SpeHeaderEntry is an Enum which provides a list of all available SPE header entries along
with the offset value from the top of the header in bytes and their associated data type
|
SPEReader.SpeHeaderType
SpeHeaderType is an Enum representing the available data types stored in the SPE header
|
SPEReader.SpeROI
Private class to represent the data for a single ROI in the SPE format
|
TiffReader
TiffReader is the file format reader for regular TIFF files,
not of any specific TIFF variant.
|
VolocityReader.Stack |
ZeissCZIReader.Attachment
Segment with ID "ZISRAWATTACH".
|
ZeissCZIReader.AttachmentEntry |
ZeissCZIReader.Channel |
ZeissCZIReader.Coordinate |
ZeissCZIReader.DimensionEntry |
ZeissCZIReader.DirectoryEntry |
ZeissCZIReader.Segment
Top-level class that implements logic common to all types of Segment.
|
ZeissCZIReader.SubBlock
Segment with ID "ZISRAWSUBBLOCK".
|
ZeissLSMReader.SubBlock |
ZeissTIFFHandler
SAX handler for parsing XML in Zeiss TIFF files.
|
ZeissTIFFHandler.Plane
Metadata for a single image plane.
|
ZeissTIFFHandler.Scaling
Scaling metadata.
|
ZeissTIFFHandler.Scaling.Dimension
Scaling information for a single dimension.
|
ZeissTIFFHandler.TagSet
A collection of tags from a single Tags block.
|
ZeissTIFFReader
ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF
files and their companion XML file.
|
ZeissTIFFReader.Channel |
ZeissTIFFReader.Plane |
ZeissTIFFReader.Slice |
ZeissTIFFReader.TIFFInfo |
ZeissTIFFReader.Timepoint |
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