Package | Description |
---|---|
loci.formats.in |
Package containing Bio-Formats file format readers.
|
loci.formats.out |
Package containing Bio-Formats file format writers.
|
loci.formats.services | |
loci.formats.tools |
Package containing utility methods corresponding
to the Bio-Formats command line tools.
|
Modifier and Type | Method and Description |
---|---|
static void |
CellVoyagerReader.main(String[] args) |
Modifier and Type | Method and Description |
---|---|
private void |
OMETiffWriter.setupServiceAndMetadata() |
Modifier and Type | Method and Description |
---|---|
void |
OMEXMLService.convertMetadata(String xml,
MetadataStore dest)
Converts information from an OME-XML string (source)
into a metadata store (destination).
|
void |
OMEXMLServiceImpl.convertMetadata(String xml,
MetadataStore dest) |
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata()
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata() |
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata(String xml)
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata(String xml) |
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata(String xml,
String version)
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata(String xml,
String version) |
OMEModelObject |
OMEXMLService.createOMEXMLRoot(String xml)
Constructs an OME root node.
|
OMEModelObject |
OMEXMLServiceImpl.createOMEXMLRoot(String xml) |
private OMEXMLMetadataRoot |
OMEXMLServiceImpl.createRoot(String xml)
Constructs an OME root node.
|
void |
LuraWaveService.decodeToMemoryGray16(short[] image,
int imageoffset,
int limit,
int quality,
int scale,
int pdx,
int pdy,
int clip_x,
int clip_y,
int clip_w,
int clip_h)
|
void |
LuraWaveServiceImpl.decodeToMemoryGray16(short[] image,
int imageoffset,
int limit,
int quality,
int scale,
int pdx,
int pdy,
int clip_x,
int clip_y,
int clip_w,
int clip_h) |
void |
LuraWaveService.decodeToMemoryGray8(byte[] image,
int limit,
int quality,
int scale)
|
void |
LuraWaveServiceImpl.decodeToMemoryGray8(byte[] image,
int limit,
int quality,
int scale) |
Object |
NetCDFServiceImpl.getArray(String path,
int[] origin,
int[] shape) |
Object |
NetCDFService.getArray(String path,
int[] origin,
int[] shape)
Retrieves an HDF path's values.
|
OMEXMLMetadata |
OMEXMLService.getOMEMetadata(MetadataRetrieve src)
Returns a
OMEXMLMetadata object with the same
contents as the given MetadataRetrieve, converting it if necessary. |
OMEXMLMetadata |
OMEXMLServiceImpl.getOMEMetadata(MetadataRetrieve src) |
String |
OMEXMLService.getOMEXML(MetadataRetrieve src)
Extracts an OME-XML metadata string from the given metadata object,
by converting to an OME-XML metadata object if necessary.
|
String |
OMEXMLServiceImpl.getOMEXML(MetadataRetrieve src) |
Object |
NetCDFServiceImpl.getVariableValue(String name) |
Object |
NetCDFService.getVariableValue(String path)
Retrieves a variable's value.
|
void |
LuraWaveService.initialize(InputStream stream)
|
void |
LuraWaveServiceImpl.initialize(InputStream stream) |
void |
JPEGTurboServiceImpl.initialize(RandomAccessInputStream jpeg,
int width,
int height) |
void |
JPEGTurboService.initialize(RandomAccessInputStream jpeg,
int width,
int height) |
void |
EXIFServiceImpl.initialize(String file) |
void |
EXIFService.initialize(String file) |
BufferedImage |
JAIIIOServiceImpl.readImage(InputStream in) |
BufferedImage |
JAIIIOService.readImage(InputStream in)
Reads an image using JAI Image I/O using the JPEG 2000 codec.
|
BufferedImage |
JAIIIOServiceImpl.readImage(InputStream in,
JPEG2000CodecOptions options) |
BufferedImage |
JAIIIOService.readImage(InputStream in,
JPEG2000CodecOptions options)
Reads an image using JAI Image I/O using the JPEG 2000 codec.
|
Raster |
JAIIIOServiceImpl.readRaster(InputStream in) |
Raster |
JAIIIOService.readRaster(InputStream in)
Reads an image into a raster using JAI Image I/O using the JPEG 2000 codec.
|
Raster |
JAIIIOServiceImpl.readRaster(InputStream in,
JPEG2000CodecOptions options) |
Raster |
JAIIIOService.readRaster(InputStream in,
JPEG2000CodecOptions options)
Reads an image into a raster using JAI Image I/O using the JPEG 2000 codec.
|
String |
OMEXMLService.transformToLatestVersion(String xml)
Transforms the given OME-XML string to the latest supported version of
of the OME-XML schema.
|
String |
OMEXMLServiceImpl.transformToLatestVersion(String xml) |
void |
JAIIIOServiceImpl.writeImage(OutputStream out,
BufferedImage img,
JPEG2000CodecOptions options) |
void |
JAIIIOService.writeImage(OutputStream out,
BufferedImage img,
JPEG2000CodecOptions options)
Writes an image using JAI Image I/O using the JPEG 2000 codec.
|
Modifier and Type | Method and Description |
---|---|
private IMetadata |
MakeTestOmeTiff.createMetadata(String name,
CoreMetadata info) |
Copyright © 2016 Open Microscopy Environment