Package | Description |
---|---|
loci.common | |
loci.formats.in |
Package containing Bio-Formats file format readers.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractNIOHandle
A wrapper for buffered NIO logic that implements the IRandomAccess interface.
|
class |
ByteArrayHandle
A wrapper for a byte array that implements the IRandomAccess interface.
|
class |
BZip2Handle
StreamHandle implementation for reading from BZip2-compressed files
or byte arrays.
|
class |
FileHandle
A wrapper for RandomAccessFile that implements the IRandomAccess interface.
|
class |
GZipHandle
StreamHandle implementation for reading from gzip-compressed files
or byte arrays.
|
class |
NIOFileHandle
A wrapper for buffered NIO logic that implements the IRandomAccess interface.
|
class |
StreamHandle
Abstract IRandomAccess implementation for reading from InputStreams and
writing to OutputStreams.
|
class |
URLHandle
Provides random access to URLs using the IRandomAccess interface.
|
class |
ZipHandle
StreamHandle implementation for reading from Zip-compressed files
or byte arrays.
|
Modifier and Type | Field and Description |
---|---|
private IRandomAccess |
RandomAccessOutputStream.outputFile |
protected IRandomAccess |
RandomAccessInputStream.raf |
protected IRandomAccess |
NIOInputStream.raf |
Modifier and Type | Method and Description |
---|---|
static IRandomAccess |
Location.getHandle(String id)
Gets an IRandomAccess object that can read from the given file.
|
private static IRandomAccess |
ZipHandle.getHandle(String file) |
static IRandomAccess |
Location.getHandle(String id,
boolean writable)
Gets an IRandomAccess object that can read from or write to the given file.
|
static IRandomAccess |
Location.getHandle(String id,
boolean writable,
boolean allowArchiveHandles)
Gets an IRandomAccess object that can read from or write to the given file.
|
static IRandomAccess |
Location.getHandle(String id,
boolean writable,
boolean allowArchiveHandles,
int bufferSize) |
static IRandomAccess |
Location.getMappedFile(String id)
Gets the random access handle for the given id.
|
Modifier and Type | Method and Description |
---|---|
static void |
Location.mapFile(String id,
IRandomAccess ira)
Maps the given id to the given IRandomAccess object.
|
Constructor and Description |
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NIOInputStream(IRandomAccess handle)
Constructs a random access stream around the given handle.
|
RandomAccessInputStream(IRandomAccess handle)
Constructs a random access stream around the given handle.
|
RandomAccessInputStream(IRandomAccess handle,
String file)
Constructs a random access stream around the given handle,
and with the associated file path.
|
RandomAccessOutputStream(IRandomAccess handle)
Constructs a random access stream around the given handle.
|
Modifier and Type | Method and Description |
---|---|
private IRandomAccess |
FlexReader.getFileHandle(String flexFile) |
Modifier and Type | Method and Description |
---|---|
float[] |
IM3Reader.FloatIM3Record.getEntries(IRandomAccess is)
Return all entries as an array
|
int |
IM3Reader.IntIM3Record.getEntry(IRandomAccess is,
int index)
Get the integer value at the given index
|
float |
IM3Reader.FloatIM3Record.getEntry(IRandomAccess is,
int index)
Get the floating-point value at the given index
|
boolean |
IM3Reader.BooleanIM3Record.getEntry(IRandomAccess is,
int index)
Get the boolean value at the given index
|
int |
IM3Reader.IntIM3Record.getNumEntries(IRandomAccess is)
Get the # of integer values in this record
|
int |
IM3Reader.FloatIM3Record.getNumEntries(IRandomAccess is)
Get the # of floating-point values in this record
|
int |
IM3Reader.BooleanIM3Record.getNumEntries(IRandomAccess is)
Get the # of boolean values in this record
|
String |
IM3Reader.StringIM3Record.getValue(IRandomAccess is)
Return the string value for this record
|
(package private) List<IM3Reader.IM3Record> |
IM3Reader.ContainerRecord.parseChunks(IRandomAccess is)
Parse and return the sub-records for the record container
|
private static IM3Reader.IM3Record |
IM3Reader.parseRecord(IRandomAccess is)
Parse an IM3 record at the current file pointer location
|
private void |
IM3Reader.Spectrum.parseSpectrumRecord(IRandomAccess is,
IM3Reader.ContainerRecord rec)
Parse the spectrum record
|
protected static String |
IM3Reader.parseString(IRandomAccess is)
Parse a string from the IM3 file at the current file pointer loc
|
void |
IM3Reader.IM3Record.writeSummary(IRandomAccess is,
String indentation)
Write a summary of the contents of the record
|
void |
IM3Reader.ContainerRecord.writeSummary(IRandomAccess is,
String indentation) |
void |
IM3Reader.IntIM3Record.writeSummary(IRandomAccess is,
String indentation) |
void |
IM3Reader.FloatIM3Record.writeSummary(IRandomAccess is,
String indentation) |
void |
IM3Reader.StringIM3Record.writeSummary(IRandomAccess is,
String indentation) |
Constructor and Description |
---|
IM3Reader.Spectrum(IRandomAccess is,
IM3Reader.ContainerRecord rec)
Construct a spectrum by parsing a Spectrum record
|
Copyright © 2016 Open Microscopy Environment