Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.in |
Package containing Bio-Formats file format readers.
|
loci.formats.meta |
Package containing core Bio-Formats metadata interfaces for the OME data model.
|
loci.formats.ome |
Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download.
|
ome.xml.model | |
ome.xml.model.primitives |
Modifier and Type | Method and Description |
---|---|
static PositiveInteger |
FormatTools.getCutIn(Integer value) |
static PositiveInteger |
FormatTools.getCutOut(Integer value) |
static PositiveInteger |
FormatTools.getEmissionWavelength(Integer value) |
static PositiveInteger |
FormatTools.getExcitationWavelength(Integer value) |
static PositiveInteger |
FormatTools.getMaxFieldCount(Integer value) |
static PositiveInteger |
FormatTools.getWavelength(Integer value) |
Modifier and Type | Field and Description |
---|---|
protected Hashtable<Integer,PositiveInteger> |
BaseZeissReader.emWavelength |
protected Hashtable<Integer,PositiveInteger> |
BaseZeissReader.exWavelength |
Modifier and Type | Method and Description |
---|---|
PositiveInteger |
AggregateMetadata.getChannelEmissionWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
MetadataRetrieve.getChannelEmissionWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
DummyMetadata.getChannelEmissionWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
AggregateMetadata.getChannelExcitationWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
MetadataRetrieve.getChannelExcitationWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
DummyMetadata.getChannelExcitationWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
AggregateMetadata.getChannelLightSourceSettingsWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
MetadataRetrieve.getChannelLightSourceSettingsWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
DummyMetadata.getChannelLightSourceSettingsWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
AggregateMetadata.getChannelSamplesPerPixel(int imageIndex,
int channelIndex) |
PositiveInteger |
MetadataRetrieve.getChannelSamplesPerPixel(int imageIndex,
int channelIndex) |
PositiveInteger |
DummyMetadata.getChannelSamplesPerPixel(int imageIndex,
int channelIndex) |
PositiveInteger |
AggregateMetadata.getLaserFrequencyMultiplication(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
MetadataRetrieve.getLaserFrequencyMultiplication(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
DummyMetadata.getLaserFrequencyMultiplication(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
AggregateMetadata.getLaserWavelength(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
MetadataRetrieve.getLaserWavelength(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
DummyMetadata.getLaserWavelength(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
AggregateMetadata.getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
PositiveInteger |
MetadataRetrieve.getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
PositiveInteger |
DummyMetadata.getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
PositiveInteger |
AggregateMetadata.getObjectiveNominalMagnification(int instrumentIndex,
int objectiveIndex) |
PositiveInteger |
MetadataRetrieve.getObjectiveNominalMagnification(int instrumentIndex,
int objectiveIndex) |
PositiveInteger |
DummyMetadata.getObjectiveNominalMagnification(int instrumentIndex,
int objectiveIndex) |
PositiveInteger |
AggregateMetadata.getPixelsSizeC(int imageIndex) |
PositiveInteger |
MetadataRetrieve.getPixelsSizeC(int imageIndex) |
PositiveInteger |
DummyMetadata.getPixelsSizeC(int imageIndex) |
PositiveInteger |
AggregateMetadata.getPixelsSizeT(int imageIndex) |
PositiveInteger |
MetadataRetrieve.getPixelsSizeT(int imageIndex) |
PositiveInteger |
DummyMetadata.getPixelsSizeT(int imageIndex) |
PositiveInteger |
AggregateMetadata.getPixelsSizeX(int imageIndex) |
PositiveInteger |
MetadataRetrieve.getPixelsSizeX(int imageIndex) |
PositiveInteger |
DummyMetadata.getPixelsSizeX(int imageIndex) |
PositiveInteger |
AggregateMetadata.getPixelsSizeY(int imageIndex) |
PositiveInteger |
MetadataRetrieve.getPixelsSizeY(int imageIndex) |
PositiveInteger |
DummyMetadata.getPixelsSizeY(int imageIndex) |
PositiveInteger |
AggregateMetadata.getPixelsSizeZ(int imageIndex) |
PositiveInteger |
MetadataRetrieve.getPixelsSizeZ(int imageIndex) |
PositiveInteger |
DummyMetadata.getPixelsSizeZ(int imageIndex) |
PositiveInteger |
AggregateMetadata.getPlateAcquisitionMaximumFieldCount(int plateIndex,
int plateAcquisitionIndex) |
PositiveInteger |
MetadataRetrieve.getPlateAcquisitionMaximumFieldCount(int plateIndex,
int plateAcquisitionIndex) |
PositiveInteger |
DummyMetadata.getPlateAcquisitionMaximumFieldCount(int plateIndex,
int plateAcquisitionIndex) |
PositiveInteger |
AggregateMetadata.getPlateColumns(int plateIndex) |
PositiveInteger |
MetadataRetrieve.getPlateColumns(int plateIndex) |
PositiveInteger |
DummyMetadata.getPlateColumns(int plateIndex) |
PositiveInteger |
AggregateMetadata.getPlateRows(int plateIndex) |
PositiveInteger |
MetadataRetrieve.getPlateRows(int plateIndex) |
PositiveInteger |
DummyMetadata.getPlateRows(int plateIndex) |
PositiveInteger |
AggregateMetadata.getTransmittanceRangeCutIn(int instrumentIndex,
int filterIndex) |
PositiveInteger |
MetadataRetrieve.getTransmittanceRangeCutIn(int instrumentIndex,
int filterIndex) |
PositiveInteger |
DummyMetadata.getTransmittanceRangeCutIn(int instrumentIndex,
int filterIndex) |
PositiveInteger |
AggregateMetadata.getTransmittanceRangeCutOut(int instrumentIndex,
int filterIndex) |
PositiveInteger |
MetadataRetrieve.getTransmittanceRangeCutOut(int instrumentIndex,
int filterIndex) |
PositiveInteger |
DummyMetadata.getTransmittanceRangeCutOut(int instrumentIndex,
int filterIndex) |
Modifier and Type | Method and Description |
---|---|
void |
AggregateMetadata.setChannelEmissionWavelength(PositiveInteger emissionWavelength,
int imageIndex,
int channelIndex) |
void |
MetadataStore.setChannelEmissionWavelength(PositiveInteger emissionWavelength,
int imageIndex,
int channelIndex) |
void |
FilterMetadata.setChannelEmissionWavelength(PositiveInteger emissionWavelength,
int imageIndex,
int channelIndex) |
void |
DummyMetadata.setChannelEmissionWavelength(PositiveInteger emissionWavelength,
int imageIndex,
int channelIndex) |
void |
AggregateMetadata.setChannelExcitationWavelength(PositiveInteger excitationWavelength,
int imageIndex,
int channelIndex) |
void |
MetadataStore.setChannelExcitationWavelength(PositiveInteger excitationWavelength,
int imageIndex,
int channelIndex) |
void |
FilterMetadata.setChannelExcitationWavelength(PositiveInteger excitationWavelength,
int imageIndex,
int channelIndex) |
void |
DummyMetadata.setChannelExcitationWavelength(PositiveInteger excitationWavelength,
int imageIndex,
int channelIndex) |
void |
AggregateMetadata.setChannelLightSourceSettingsWavelength(PositiveInteger wavelength,
int imageIndex,
int channelIndex) |
void |
MetadataStore.setChannelLightSourceSettingsWavelength(PositiveInteger wavelength,
int imageIndex,
int channelIndex) |
void |
FilterMetadata.setChannelLightSourceSettingsWavelength(PositiveInteger wavelength,
int imageIndex,
int channelIndex) |
void |
DummyMetadata.setChannelLightSourceSettingsWavelength(PositiveInteger wavelength,
int imageIndex,
int channelIndex) |
void |
AggregateMetadata.setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
int imageIndex,
int channelIndex) |
void |
MetadataStore.setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
int imageIndex,
int channelIndex) |
void |
FilterMetadata.setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
int imageIndex,
int channelIndex) |
void |
DummyMetadata.setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
int imageIndex,
int channelIndex) |
void |
AggregateMetadata.setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
int instrumentIndex,
int lightSourceIndex) |
void |
MetadataStore.setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
int instrumentIndex,
int lightSourceIndex) |
void |
FilterMetadata.setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
int instrumentIndex,
int lightSourceIndex) |
void |
DummyMetadata.setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
int instrumentIndex,
int lightSourceIndex) |
void |
AggregateMetadata.setLaserWavelength(PositiveInteger wavelength,
int instrumentIndex,
int lightSourceIndex) |
void |
MetadataStore.setLaserWavelength(PositiveInteger wavelength,
int instrumentIndex,
int lightSourceIndex) |
void |
FilterMetadata.setLaserWavelength(PositiveInteger wavelength,
int instrumentIndex,
int lightSourceIndex) |
void |
DummyMetadata.setLaserWavelength(PositiveInteger wavelength,
int instrumentIndex,
int lightSourceIndex) |
void |
AggregateMetadata.setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
MetadataStore.setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
FilterMetadata.setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
DummyMetadata.setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
AggregateMetadata.setObjectiveNominalMagnification(PositiveInteger nominalMagnification,
int instrumentIndex,
int objectiveIndex) |
void |
MetadataStore.setObjectiveNominalMagnification(PositiveInteger nominalMagnification,
int instrumentIndex,
int objectiveIndex) |
void |
FilterMetadata.setObjectiveNominalMagnification(PositiveInteger nominalMagnification,
int instrumentIndex,
int objectiveIndex) |
void |
DummyMetadata.setObjectiveNominalMagnification(PositiveInteger nominalMagnification,
int instrumentIndex,
int objectiveIndex) |
void |
AggregateMetadata.setPixelsSizeC(PositiveInteger sizeC,
int imageIndex) |
void |
MetadataStore.setPixelsSizeC(PositiveInteger sizeC,
int imageIndex) |
void |
FilterMetadata.setPixelsSizeC(PositiveInteger sizeC,
int imageIndex) |
void |
DummyMetadata.setPixelsSizeC(PositiveInteger sizeC,
int imageIndex) |
void |
AggregateMetadata.setPixelsSizeT(PositiveInteger sizeT,
int imageIndex) |
void |
MetadataStore.setPixelsSizeT(PositiveInteger sizeT,
int imageIndex) |
void |
FilterMetadata.setPixelsSizeT(PositiveInteger sizeT,
int imageIndex) |
void |
DummyMetadata.setPixelsSizeT(PositiveInteger sizeT,
int imageIndex) |
void |
AggregateMetadata.setPixelsSizeX(PositiveInteger sizeX,
int imageIndex) |
void |
MetadataStore.setPixelsSizeX(PositiveInteger sizeX,
int imageIndex) |
void |
FilterMetadata.setPixelsSizeX(PositiveInteger sizeX,
int imageIndex) |
void |
DummyMetadata.setPixelsSizeX(PositiveInteger sizeX,
int imageIndex) |
void |
AggregateMetadata.setPixelsSizeY(PositiveInteger sizeY,
int imageIndex) |
void |
MetadataStore.setPixelsSizeY(PositiveInteger sizeY,
int imageIndex) |
void |
FilterMetadata.setPixelsSizeY(PositiveInteger sizeY,
int imageIndex) |
void |
DummyMetadata.setPixelsSizeY(PositiveInteger sizeY,
int imageIndex) |
void |
AggregateMetadata.setPixelsSizeZ(PositiveInteger sizeZ,
int imageIndex) |
void |
MetadataStore.setPixelsSizeZ(PositiveInteger sizeZ,
int imageIndex) |
void |
FilterMetadata.setPixelsSizeZ(PositiveInteger sizeZ,
int imageIndex) |
void |
DummyMetadata.setPixelsSizeZ(PositiveInteger sizeZ,
int imageIndex) |
void |
AggregateMetadata.setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
int plateIndex,
int plateAcquisitionIndex) |
void |
MetadataStore.setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
int plateIndex,
int plateAcquisitionIndex) |
void |
FilterMetadata.setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
int plateIndex,
int plateAcquisitionIndex) |
void |
DummyMetadata.setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
int plateIndex,
int plateAcquisitionIndex) |
void |
AggregateMetadata.setPlateColumns(PositiveInteger columns,
int plateIndex) |
void |
MetadataStore.setPlateColumns(PositiveInteger columns,
int plateIndex) |
void |
FilterMetadata.setPlateColumns(PositiveInteger columns,
int plateIndex) |
void |
DummyMetadata.setPlateColumns(PositiveInteger columns,
int plateIndex) |
void |
AggregateMetadata.setPlateRows(PositiveInteger rows,
int plateIndex) |
void |
MetadataStore.setPlateRows(PositiveInteger rows,
int plateIndex) |
void |
FilterMetadata.setPlateRows(PositiveInteger rows,
int plateIndex) |
void |
DummyMetadata.setPlateRows(PositiveInteger rows,
int plateIndex) |
void |
AggregateMetadata.setTransmittanceRangeCutIn(PositiveInteger cutIn,
int instrumentIndex,
int filterIndex) |
void |
MetadataStore.setTransmittanceRangeCutIn(PositiveInteger cutIn,
int instrumentIndex,
int filterIndex) |
void |
FilterMetadata.setTransmittanceRangeCutIn(PositiveInteger cutIn,
int instrumentIndex,
int filterIndex) |
void |
DummyMetadata.setTransmittanceRangeCutIn(PositiveInteger cutIn,
int instrumentIndex,
int filterIndex) |
void |
AggregateMetadata.setTransmittanceRangeCutOut(PositiveInteger cutOut,
int instrumentIndex,
int filterIndex) |
void |
MetadataStore.setTransmittanceRangeCutOut(PositiveInteger cutOut,
int instrumentIndex,
int filterIndex) |
void |
FilterMetadata.setTransmittanceRangeCutOut(PositiveInteger cutOut,
int instrumentIndex,
int filterIndex) |
void |
DummyMetadata.setTransmittanceRangeCutOut(PositiveInteger cutOut,
int instrumentIndex,
int filterIndex) |
Modifier and Type | Method and Description |
---|---|
PositiveInteger |
OMEXMLMetadataImpl.getChannelEmissionWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getChannelExcitationWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getChannelLightSourceSettingsWavelength(int imageIndex,
int channelIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getChannelSamplesPerPixel(int imageIndex,
int channelIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getLaserFrequencyMultiplication(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getLaserWavelength(int instrumentIndex,
int lightSourceIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getObjectiveNominalMagnification(int instrumentIndex,
int objectiveIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPixelsSizeC(int imageIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPixelsSizeT(int imageIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPixelsSizeX(int imageIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPixelsSizeY(int imageIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPixelsSizeZ(int imageIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPlateAcquisitionMaximumFieldCount(int plateIndex,
int plateAcquisitionIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPlateColumns(int plateIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getPlateRows(int plateIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getTransmittanceRangeCutIn(int instrumentIndex,
int filterIndex) |
PositiveInteger |
OMEXMLMetadataImpl.getTransmittanceRangeCutOut(int instrumentIndex,
int filterIndex) |
Modifier and Type | Method and Description |
---|---|
void |
OMEXMLMetadataImpl.setChannelEmissionWavelength(PositiveInteger emissionWavelength,
int imageIndex,
int channelIndex) |
void |
OMEXMLMetadataImpl.setChannelExcitationWavelength(PositiveInteger excitationWavelength,
int imageIndex,
int channelIndex) |
void |
OMEXMLMetadataImpl.setChannelLightSourceSettingsWavelength(PositiveInteger wavelength,
int imageIndex,
int channelIndex) |
void |
OMEXMLMetadataImpl.setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
int imageIndex,
int channelIndex) |
void |
OMEXMLMetadataImpl.setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
int instrumentIndex,
int lightSourceIndex) |
void |
OMEXMLMetadataImpl.setLaserWavelength(PositiveInteger wavelength,
int instrumentIndex,
int lightSourceIndex) |
void |
OMEXMLMetadataImpl.setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
OMEXMLMetadataImpl.setObjectiveNominalMagnification(PositiveInteger nominalMagnification,
int instrumentIndex,
int objectiveIndex) |
void |
OMEXMLMetadataImpl.setPixelsSizeC(PositiveInteger sizeC,
int imageIndex) |
void |
OMEXMLMetadataImpl.setPixelsSizeT(PositiveInteger sizeT,
int imageIndex) |
void |
OMEXMLMetadataImpl.setPixelsSizeX(PositiveInteger sizeX,
int imageIndex) |
void |
OMEXMLMetadataImpl.setPixelsSizeY(PositiveInteger sizeY,
int imageIndex) |
void |
OMEXMLMetadataImpl.setPixelsSizeZ(PositiveInteger sizeZ,
int imageIndex) |
void |
OMEXMLMetadataImpl.setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
int plateIndex,
int plateAcquisitionIndex) |
void |
OMEXMLMetadataImpl.setPlateColumns(PositiveInteger columns,
int plateIndex) |
void |
OMEXMLMetadataImpl.setPlateRows(PositiveInteger rows,
int plateIndex) |
void |
OMEXMLMetadataImpl.setTransmittanceRangeCutIn(PositiveInteger cutIn,
int instrumentIndex,
int filterIndex) |
void |
OMEXMLMetadataImpl.setTransmittanceRangeCutOut(PositiveInteger cutOut,
int instrumentIndex,
int filterIndex) |
Modifier and Type | Method and Description |
---|---|
PositiveInteger |
Plate.getColumns() |
PositiveInteger |
TransmittanceRange.getCutIn() |
PositiveInteger |
TransmittanceRange.getCutOut() |
PositiveInteger |
Channel.getEmissionWavelength() |
PositiveInteger |
Channel.getExcitationWavelength() |
PositiveInteger |
Laser.getFrequencyMultiplication() |
PositiveInteger |
PlateAcquisition.getMaximumFieldCount() |
PositiveInteger |
Objective.getNominalMagnification() |
PositiveInteger |
Plate.getRows() |
PositiveInteger |
Channel.getSamplesPerPixel() |
PositiveInteger |
Pixels.getSizeC() |
PositiveInteger |
Pixels.getSizeT() |
PositiveInteger |
Pixels.getSizeX() |
PositiveInteger |
Pixels.getSizeY() |
PositiveInteger |
Pixels.getSizeZ() |
PositiveInteger |
LightSourceSettings.getWavelength() |
PositiveInteger |
Laser.getWavelength() |
Modifier and Type | Method and Description |
---|---|
void |
Plate.setColumns(PositiveInteger columns) |
void |
TransmittanceRange.setCutIn(PositiveInteger cutIn) |
void |
TransmittanceRange.setCutOut(PositiveInteger cutOut) |
void |
Channel.setEmissionWavelength(PositiveInteger emissionWavelength) |
void |
Channel.setExcitationWavelength(PositiveInteger excitationWavelength) |
void |
Laser.setFrequencyMultiplication(PositiveInteger frequencyMultiplication) |
void |
PlateAcquisition.setMaximumFieldCount(PositiveInteger maximumFieldCount) |
void |
Objective.setNominalMagnification(PositiveInteger nominalMagnification) |
void |
Plate.setRows(PositiveInteger rows) |
void |
Channel.setSamplesPerPixel(PositiveInteger samplesPerPixel) |
void |
Pixels.setSizeC(PositiveInteger sizeC) |
void |
Pixels.setSizeT(PositiveInteger sizeT) |
void |
Pixels.setSizeX(PositiveInteger sizeX) |
void |
Pixels.setSizeY(PositiveInteger sizeY) |
void |
Pixels.setSizeZ(PositiveInteger sizeZ) |
void |
LightSourceSettings.setWavelength(PositiveInteger wavelength) |
void |
Laser.setWavelength(PositiveInteger wavelength) |
Modifier and Type | Method and Description |
---|---|
static PositiveInteger |
PositiveInteger.valueOf(String s)
Returns an
PositiveInteger object holding the value of
the specified string. |
Copyright © 2014 Open Microscopy Environment