Package | Description |
---|---|
loci.formats.ome |
Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download.
|
loci.formats.services | |
loci.ome.editor |
OME Metadata Editor:
an application for exploration and editing of OME-XML and OME-TIFF metadata.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractOMEXMLMetadata
A utility class for constructing and manipulating OME-XML DOMs.
|
class |
OMEXMLMetadataImpl
A metadata store implementation for constructing and manipulating OME-XML
DOMs for the current version of OME-XML.
|
Modifier and Type | Method and Description |
---|---|
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata()
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata() |
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata(String xml)
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata(String xml) |
OMEXMLMetadata |
OMEXMLService.createOMEXMLMetadata(String xml,
String version)
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package,
wrapping a DOM representation of the given OME-XML string. |
OMEXMLMetadata |
OMEXMLServiceImpl.createOMEXMLMetadata(String xml,
String version) |
OMEXMLMetadata |
OMEXMLService.getOMEMetadata(MetadataRetrieve src)
Returns a
OMEXMLMetadata object with the same
contents as the given MetadataRetrieve, converting it if necessary. |
OMEXMLMetadata |
OMEXMLServiceImpl.getOMEMetadata(MetadataRetrieve src) |
Modifier and Type | Method and Description |
---|---|
void |
OMEXMLService.addMetadataOnly(OMEXMLMetadata omexmlMeta,
int image)
Insert a MetadataOnly element under the Image specified by 'index' in the
given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.addMetadataOnly(OMEXMLMetadata omexmlMeta,
int image) |
Hashtable |
OMEXMLService.getOriginalMetadata(OMEXMLMetadata omexmlMeta)
Parse any OriginalMetadata annotations from the given OME-XML metadata
object and store them in a Hashtable.
|
Hashtable |
OMEXMLServiceImpl.getOriginalMetadata(OMEXMLMetadata omexmlMeta) |
boolean |
OMEXMLService.isEqual(OMEXMLMetadata src1,
OMEXMLMetadata src2)
Determine whether or not two OMEXMLMetadata objects are equal.
|
boolean |
OMEXMLServiceImpl.isEqual(OMEXMLMetadata src1,
OMEXMLMetadata src2) |
void |
OMEXMLService.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
Hashtable<String,Object> metadata)
Adds the key/value pairs in the specified Hashtable as new
OriginalMetadata annotations in the given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
Hashtable<String,Object> metadata) |
void |
OMEXMLService.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
String key,
String value)
Adds the specified key/value pair as a new OriginalMetadata node
to the given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.populateOriginalMetadata(OMEXMLMetadata omexmlMeta,
String key,
String value) |
void |
OMEXMLService.removeBinData(OMEXMLMetadata omexmlMeta)
Remove all of the BinData elements from the given OME-XML metadata object.
|
void |
OMEXMLServiceImpl.removeBinData(OMEXMLMetadata omexmlMeta) |
void |
OMEXMLService.removeChannels(OMEXMLMetadata omexmlMeta,
int image,
int sizeC)
Remove all but the first sizeC valid Channel elements from the given
OME-XML metadata object.
|
void |
OMEXMLServiceImpl.removeChannels(OMEXMLMetadata omexmlMeta,
int image,
int sizeC) |
Modifier and Type | Field and Description |
---|---|
protected OMEXMLMetadata |
MetadataPane.ms |
Copyright © 2014 Open Microscopy Environment