Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.gui |
Package containing Bio-Formats graphical user interface code.
|
loci.formats.meta |
Package containing core Bio-Formats metadata interfaces for the OME data model.
|
loci.formats.ome |
Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download.
|
loci.formats.services |
Modifier and Type | Field and Description |
---|---|
protected MetadataRetrieve |
FormatWriter.metadataRetrieve
Current metadata retrieval object.
|
Modifier and Type | Method and Description |
---|---|
static MetadataRetrieve |
MetadataTools.asRetrieve(MetadataStore meta)
Deprecated.
This method is not thread-safe; use
OMEXMLService.asRetrieve(MetadataStore)
instead. |
MetadataRetrieve |
IFormatWriter.getMetadataRetrieve()
Retrieves the current metadata retrieval object for this writer.
|
MetadataRetrieve |
FormatWriter.getMetadataRetrieve() |
MetadataRetrieve |
WriterWrapper.getMetadataRetrieve() |
MetadataRetrieve |
ImageWriter.getMetadataRetrieve() |
Modifier and Type | Method and Description |
---|---|
static IMetadata |
MetadataTools.getOMEMetadata(MetadataRetrieve src)
Deprecated.
This method is not thread-safe; use
OMEXMLService.getOMEMetadata(MetadataRetrieve)
instead. |
static String |
MetadataTools.getOMEXML(MetadataRetrieve src)
Deprecated.
This method is not thread-safe; use
OMEXMLService.getOMEXML(MetadataRetrieve)
instead. |
void |
IFormatWriter.setMetadataRetrieve(MetadataRetrieve r)
Sets the metadata retrieval object from
which to retrieve standardized metadata.
|
void |
FormatWriter.setMetadataRetrieve(MetadataRetrieve retrieve) |
void |
WriterWrapper.setMetadataRetrieve(MetadataRetrieve r) |
void |
ImageWriter.setMetadataRetrieve(MetadataRetrieve r) |
static void |
MetadataTools.verifyMinimumPopulated(MetadataRetrieve src)
Checks whether the given metadata object has the minimum metadata
populated to successfully describe an Image.
|
static void |
MetadataTools.verifyMinimumPopulated(MetadataRetrieve src,
int n)
Checks whether the given metadata object has the minimum metadata
populated to successfully describe the nth Image.
|
Modifier and Type | Method and Description |
---|---|
static BufferedImage |
AWTImageTools.makeImage(byte[] data,
boolean interleaved,
MetadataRetrieve meta,
int series)
Creates an image from the given raw byte array, obtaining the
dimensional parameters from the specified metadata object.
|
Modifier and Type | Interface and Description |
---|---|
interface |
IMetadata
A proxy capable of bidirectional communication of biological image data to
and from a particular storage medium.
|
Modifier and Type | Class and Description |
---|---|
class |
AggregateMetadata
A metadata store which delegates the actual storage to one or more sub
metadata stores.
|
class |
DummyMetadata
A dummy implementation for
MetadataStore and
MetadataRetrieve that is used when no other
metadata implementations are available. |
Modifier and Type | Method and Description |
---|---|
static void |
MetadataConverter.convertMetadata(MetadataRetrieve src,
MetadataStore dest)
Copies information from a metadata retrieval object
(source) into a metadata store (destination).
|
Modifier and Type | Interface and Description |
---|---|
interface |
OMEXMLMetadata
A utility class for constructing and manipulating OME-XML DOMs.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractOMEXMLMetadata
A utility class for constructing and manipulating OME-XML DOMs.
|
class |
OMEXMLMetadataImpl
A metadata store implementation for constructing and manipulating OME-XML
DOMs for the current version of OME-XML.
|
Modifier and Type | Method and Description |
---|---|
MetadataRetrieve |
OMEXMLService.asRetrieve(MetadataStore meta)
Gets the given
MetadataStore object as a MetadataRetrieve . |
MetadataRetrieve |
OMEXMLServiceImpl.asRetrieve(MetadataStore meta) |
Modifier and Type | Method and Description |
---|---|
MetadataStore |
OMEXMLService.asStore(MetadataRetrieve meta)
Gets the given
MetadataRetrieve object as a MetadataStore . |
MetadataStore |
OMEXMLServiceImpl.asStore(MetadataRetrieve meta) |
void |
OMEXMLService.convertMetadata(MetadataRetrieve src,
MetadataStore dest)
Copies information from a metadata retrieval object
(source) into a metadata store (destination).
|
void |
OMEXMLServiceImpl.convertMetadata(MetadataRetrieve src,
MetadataStore dest) |
OMEXMLMetadata |
OMEXMLService.getOMEMetadata(MetadataRetrieve src)
Returns a
OMEXMLMetadata object with the same
contents as the given MetadataRetrieve, converting it if necessary. |
OMEXMLMetadata |
OMEXMLServiceImpl.getOMEMetadata(MetadataRetrieve src) |
String |
OMEXMLService.getOMEXML(MetadataRetrieve src)
Extracts an OME-XML metadata string from the given metadata object,
by converting to an OME-XML metadata object if necessary.
|
String |
OMEXMLServiceImpl.getOMEXML(MetadataRetrieve src) |
Copyright © 2014 Open Microscopy Environment