Package | Description |
---|---|
loci.formats |
Bio-Formats: a library for reading and writing popular microscopy file
formats.
|
loci.formats.meta |
Package containing core Bio-Formats metadata interfaces for the OME data model.
|
loci.formats.ome |
Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download.
|
loci.plugins.in |
Bio-Formats Importer plugin for ImageJ.
|
loci.plugins.util |
Utility classes and methods for the LOCI plugins for ImageJ.
|
Modifier and Type | Method and Description |
---|---|
static IMetadata |
MetadataTools.createOMEXMLMetadata()
Creates an OME-XML metadata object using reflection, to avoid
direct dependencies on the optional
loci.formats.ome package. |
static IMetadata |
MetadataTools.createOMEXMLMetadata(String xml)
Deprecated.
This method is not thread-safe; use
OMEXMLService.createOMEXMLMetadata(String)
instead. |
static IMetadata |
MetadataTools.createOMEXMLMetadata(String xml,
String version)
Deprecated.
This method is not thread-safe; use
OMEXMLService.createOMEXMLMetadata(String,
String)
instead. |
static IMetadata |
MetadataTools.getOMEMetadata(MetadataRetrieve src)
Deprecated.
This method is not thread-safe; use
OMEXMLService.getOMEMetadata(MetadataRetrieve)
instead. |
Modifier and Type | Class and Description |
---|---|
class |
AggregateMetadata
A metadata store which delegates the actual storage to one or more sub
metadata stores.
|
class |
DummyMetadata
A dummy implementation for
MetadataStore and
MetadataRetrieve that is used when no other
metadata implementations are available. |
Modifier and Type | Interface and Description |
---|---|
interface |
OMEXMLMetadata
A utility class for constructing and manipulating OME-XML DOMs.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractOMEXMLMetadata
A utility class for constructing and manipulating OME-XML DOMs.
|
class |
OMEXMLMetadataImpl
A metadata store implementation for constructing and manipulating OME-XML
DOMs for the current version of OME-XML.
|
Modifier and Type | Field and Description |
---|---|
protected IMetadata |
ImportProcess.meta |
Modifier and Type | Method and Description |
---|---|
IMetadata |
ImportProcess.getOMEMetadata()
Valid only after
ImportStep.READER . |
Modifier and Type | Method and Description |
---|---|
static void |
ROIHandler.openROIs(IMetadata retrieve,
ImagePlus[] images)
Look for ROIs in the given OMEXMLMetadata; if any are present, apply
them to the given images and display them in the ROI manager.
|
Copyright © 2014 Open Microscopy Environment