ome::bioformats::tiff::ImageJMetadata Struct Reference

ImageJ metadata from IFD tags. More...

#include <ome/bioformats/tiff/ImageJMetadata.h>

Collaboration diagram for ome::bioformats::tiff::ImageJMetadata:

Public Member Functions
	ImageJMetadata (const IFD &ifd)
	Construct from an IFD. More...

Static Public Member Functions
static std::map< std::string, std::string >	parse_imagedescription (const std::string &description)
	Parse the TIFF ImageDescription field content. More...

Public Attributes
std::map< std::string, std::string >	map
	Map of key-value pairs from ImageDescription field.
std::vector< uint32_t >	counts
	Content of ImageJMetaDataByteCounts field.
std::vector< uint8_t >	data
	Content of ImageJMetaData field.
dimension_size_type	images
	Total number of images.
dimension_size_type	slices
	Slice count.
dimension_size_type	frames
	Frame count.
dimension_size_type	channels
	Channel count.
std::string	unit
	Length unit name.
double	spacing
	Z spacing distance.
double	finterval
	Frame interval time.
dimension_size_type	xorigin
	X origin.
dimension_size_type	yorigin
	Y origin.
std::string	mode
	Color mode.
bool	loop
	Loop animation(?).

Protected Member Functions
template<typename T >
void	parse_value (const std::string &key, T &value)
	Parse a key's value into a given type. More...
void	parse_value (const std::string &key, bool &value)
	Parse a key's value into a bool. More...
void	parse_value (const std::string &key, std::string &value)
	Parse a key's value into a string. More...

Static Protected Member Functions
static void	parse_value_error (const std::string &key, const std::string &value)
	Throw an exception on failing to parse a particular key value. More...

Detailed Description

ImageJ metadata from IFD tags.

Constructor & Destructor Documentation

ome::bioformats::tiff::ImageJMetadata::ImageJMetadata

(

const IFD &

ifd

)

Construct from an IFD.

Parameters

ifd	the IFD to parse the metadata from.

Exceptions

an	exception on parse errors.

References channels, counts, data, finterval, frames, ome::bioformats::tiff::IFD::getField(), ome::bioformats::tiff::IMAGEDESCRIPTION, ome::bioformats::tiff::IMAGEJ_META_DATA, ome::bioformats::tiff::IMAGEJ_META_DATA_BYTE_COUNTS, images, loop, map, mode, parse_imagedescription(), parse_value(), slices, spacing, unit, xorigin, and yorigin.

Member Function Documentation

std::map< std::string, std::string > ome::bioformats::tiff::ImageJMetadata::parse_imagedescription ( const std::string &  description )

static

Parse the TIFF ImageDescription field content.

Split into separate lines, then split on the first = symbol into key-value pairs.

Parameters

description

the TIFF ImageDescription field content.

Returns

a map of all the key-value pairs.

Referenced by ImageJMetadata(), and ome::bioformats::in::TIFFReader::readIFDs().

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template<typename T >

void ome::bioformats::tiff::ImageJMetadata::parse_value ( const std::string &  key, T &  value  )

inlineprotected

Parse a key's value into a given type.

The string value of the given key will be parsed into the corresponding value type.

Parameters

key	the key name.
value	the value to store the key's parsed string value.

Exceptions

std::runtime_error

on parse errors.

References parse_value_error().

Referenced by ImageJMetadata().

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void ome::bioformats::tiff::ImageJMetadata::parse_value ( const std::string &  key, bool &  value  )

protected

Parse a key's value into a bool.

The string value of the given key will be parsed into a bool type.

Parameters

key	the key name.
value	the value to store the key's parsed string value.

Exceptions

std::runtime_error

on parse errors.

References map, and parse_value_error().

void ome::bioformats::tiff::ImageJMetadata::parse_value ( const std::string &  key, std::string &  value  )

protected

Parse a key's value into a string.

The string value of the given key will be parsed into a string type.

Parameters

key	the key name.
value	the value to store the key's parsed string value.

Exceptions

std::runtime_error

on parse errors.

References map.

void ome::bioformats::tiff::ImageJMetadata::parse_value_error ( const std::string &  key, const std::string &  value  )

staticprotected

Throw an exception on failing to parse a particular key value.

Parameters

key	the key name.
value	the value which failed to parse.

Exceptions

std::runtime_error.

Referenced by parse_value().

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The documentation for this struct was generated from the following files:

• ome/bioformats/tiff/ImageJMetadata.h
• ome/bioformats/tiff/ImageJMetadata.cpp