Tagged Image File Format (TIFF). More...

#include <ome/bioformats/tiff/TIFF.h>

Inheritance diagram for ome::bioformats::tiff::TIFF:

Collaboration diagram for ome::bioformats::tiff::TIFF:

Classes
class	Impl
	Internal implementation details of TIFF. More...

Public Types
typedef IFDIterator< IFD >	iterator
	IFD iterator.

typedef IFDIterator< const IFD >	const_iterator
	const IFD iterator.

Public Member Functions
	~TIFF ()
	Destructor.

void	close ()
	Close the TIFF file. More...

	operator bool ()
	Check if the TIFF file is valid. More...

directory_index_type	directoryCount () const
	Get the total number of IFDs. More...

ome::compat::shared_ptr< IFD >	getDirectoryByIndex (directory_index_type index) const
	Get an IFD by its index. More...

ome::compat::shared_ptr< IFD >	getDirectoryByOffset (offset_type offset) const
	Get an IFD by its offset in the file. More...

ome::compat::shared_ptr< IFD >	getCurrentDirectory () const
	Get the currently active IFD. More...

void	writeCurrentDirectory ()
	Write the currently active IFD. More...

wrapped_type *	getWrapped () const
	Get the underlying libtiff `::TIFF` instance. More...

iterator	begin ()
	Get the first image file directory. More...

const_iterator	begin () const
	Get the first image file directory. More...

iterator	end ()
	Get the last+1 image file directory. More...

const_iterator	end () const
	Get the last+1 image file directory. More...

Static Public Member Functions
static ome::compat::shared_ptr< TIFF >	open (const boost::filesystem::path &filename, const std::string &mode)
	Open a TIFF file for reading or writing. More...

Protected Member Functions
	TIFF (const boost::filesystem::path &filename, const std::string &mode)
	Constructor (non-public).

Private Member Functions
	TIFF (const TIFF &)
	Copy constructor (deleted).

TIFF &	operator= (const TIFF &)
	Assignment operator (deleted).

void	registerImageJTags ()
	Register ImageJ tags with libtiff for this image.

Private Attributes
ome::compat::shared_ptr< Impl >	impl
	Private implementation details.

Friends
class	IFD

Detailed Description

Tagged Image File Format (TIFF).

This class is the primary class for reading and writing TIFF files. Use the static open() method to get a working instance. This instance may be used to get IFD instances and then access to image metadata and pixel data.

Member Function Documentation

TIFF::iterator ome::bioformats::tiff::TIFF::begin ( )

Get the first image file directory.

Returns: an iterator referring to the first image file directory

References getDirectoryByIndex().

Referenced by directoryCount().

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TIFF::const_iterator ome::bioformats::tiff::TIFF::begin ( ) const

Get the first image file directory.

Returns: an iterator referring to the first image file directory

References getDirectoryByIndex().

void ome::bioformats::tiff::TIFF::close ( )

Close the TIFF file.

Note that this will be done automatically when the destructor runs. Any further method calls using this object or any child IFD will throw an Exception.

References impl.

directory_index_type ome::bioformats::tiff::TIFF::directoryCount ( ) const

Get the total number of IFDs.

Returns: the IFD count.

References begin(), end(), and impl.

TIFF::iterator ome::bioformats::tiff::TIFF::end ( )

Get the last+1 image file directory.

Returns: an iterator referring to the last+1 image file directory.

Referenced by directoryCount().

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TIFF::const_iterator ome::bioformats::tiff::TIFF::end ( ) const

Get the last+1 image file directory.

Returns: an iterator referring to the last+1 image file directory.

ome::compat::shared_ptr< IFD > ome::bioformats::tiff::TIFF::getCurrentDirectory ( ) const

Get the currently active IFD.

Returns: the IFD.

Exceptions

an	Exception if the IFD could not be accessed.

References ome::bioformats::tiff::IFD::current().

Referenced by writeCurrentDirectory().

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ome::compat::shared_ptr< IFD > ome::bioformats::tiff::TIFF::getDirectoryByIndex ( directory_index_type index ) const

Get an IFD by its index.

Parameters

index the directory index.

Returns: the IFD.

Exceptions

an	Exception if the index is invalid or could not be accessed.

References ome::bioformats::tiff::Sentry::error(), impl, and ome::bioformats::tiff::IFD::openIndex().

Referenced by begin().

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ome::compat::shared_ptr< IFD > ome::bioformats::tiff::TIFF::getDirectoryByOffset ( offset_type offset ) const

Get an IFD by its offset in the file.

Parameters

offset the directory offset.

Returns: the IFD.

Exceptions

an	Exception if the offset is invalid or could not be accessed.

References ome::bioformats::tiff::Sentry::error(), impl, and ome::bioformats::tiff::IFD::openOffset().

TIFF::wrapped_type * ome::bioformats::tiff::TIFF::getWrapped ( ) const

Get the underlying libtiff ::TIFF instance.

If there is any need to use the libtiff C interface to access any functionality not exposed through these C++ wrapper classes, this will provide a pointer to the handle.

Note: Due to not including the libtiff C headers the ::TIFF type isn't available here. After including the main <tiffio.h> header, cast the return value to the correct type:

* ::TIFF *tiff = reinterpret_cast< ::TIFF *>(myfile.getWrapped());
*

Returns: an opaque pointer to the wrapped ::TIFF instance.

References impl.

Referenced by registerImageJTags().

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ome::compat::shared_ptr< TIFF > ome::bioformats::tiff::TIFF::open	(	const boost::filesystem::path &	filename,
		const std::string &	mode
	)

static

Open a TIFF file for reading or writing.

Note: There are additional open flags, documented in TIFFOpen(3).

Parameters

filename	the file to open.
mode	the file open mode (`r` to read, `w` to write or `a` to append).

Returns: the the open TIFF.

Exceptions

an	Exception on failure.

Referenced by ome::bioformats::in::OMETIFFReader::getTIFF(), and ome::bioformats::out::OMETIFFWriter::setId().

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ome::bioformats::tiff::TIFF::operator bool ( )

Check if the TIFF file is valid.

Returns: true if the file is open and available for reading and writing, or false if closed or invalid.

void ome::bioformats::tiff::TIFF::writeCurrentDirectory ( )

Write the currently active IFD.

The pixel data accompanying this IFD must have been written using IFD::writeImage() prior to calling this method, or else the TIFF tags for strip and tile offsets will be incomplete and the file will fail to read.

References ome::bioformats::tiff::Sentry::error(), getCurrentDirectory(), impl, and ome::bioformats::tiff::SOFTWARE.

The documentation for this class was generated from the following files:

ome/bioformats/tiff/TIFF.h
ome/bioformats/tiff/TIFF.cpp

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Friends

Detailed Description

Member Function Documentation