#include <ome/xml/model/Experimenter.h>

Inheritance diagram for ome::xml::model::Experimenter:

Collaboration diagram for ome::xml::model::Experimenter:

Classes
class	Impl
	Private implementation details of Experimenter model object. More...

Public Member Functions
	Experimenter ()
	Default constructor.

	Experimenter (const Experimenter &copy)
	Copy constructor. More...

virtual	~Experimenter ()
	Destructor.

const std::string &	elementName () const
	Get the element name of this model object. More...

bool	validElementName (const std::string &name) const
	Check if a given element name is valid for processing by this model object. More...

virtual void	update (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

ome::compat::shared_ptr< std::string >	getEmail ()
	Get the Email property. More...

const ome::compat::shared_ptr< std::string >	getEmail () const
	Get the Email property. More...

void	setEmail (ome::compat::shared_ptr< std::string > &email)
	Set the Email property. More...

ome::compat::shared_ptr< std::string >	getUserName ()
	Get the UserName property. More...

const ome::compat::shared_ptr< std::string >	getUserName () const
	Get the UserName property. More...

void	setUserName (ome::compat::shared_ptr< std::string > &userName)
	Set the UserName property. More...

ome::compat::shared_ptr< std::string >	getFirstName ()
	Get the FirstName property. More...

const ome::compat::shared_ptr< std::string >	getFirstName () const
	Get the FirstName property. More...

void	setFirstName (ome::compat::shared_ptr< std::string > &firstName)
	Set the FirstName property. More...

ome::compat::shared_ptr< std::string >	getMiddleName ()
	Get the MiddleName property. More...

const ome::compat::shared_ptr< std::string >	getMiddleName () const
	Get the MiddleName property. More...

void	setMiddleName (ome::compat::shared_ptr< std::string > &middleName)
	Set the MiddleName property. More...

ome::compat::shared_ptr< std::string >	getLastName ()
	Get the LastName property. More...

const ome::compat::shared_ptr< std::string >	getLastName () const
	Get the LastName property. More...

void	setLastName (ome::compat::shared_ptr< std::string > &lastName)
	Set the LastName property. More...

const std::string &	getID () const
	Get the ID property. More...

void	setID (const std::string &id)
	Set the ID property. More...

ome::compat::shared_ptr< std::string >	getInstitution ()
	Get the Institution property. More...

const ome::compat::shared_ptr< std::string >	getInstitution () const
	Get the Institution property. More...

void	setInstitution (ome::compat::shared_ptr< std::string > &institution)
	Set the Institution property. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedAnnotationList () const
	Get size of linked Annotation list. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type	getLinkedAnnotationList () const
	Get the linked Annotation list. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	getLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Annotation. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	setLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Set linked Annotation. More...

bool	linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Link Annotation. More...

bool	unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Unlink Annotation. More...

OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedImageList () const
	Get size of linked Image list. More...

OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type	getLinkedImageList () const
	Get the linked Image list. More...

const ome::compat::weak_ptr< ome::xml::model::Image > &	getLinkedImage (OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Image. More...

const ome::compat::weak_ptr< ome::xml::model::Image > &	setLinkedImage (OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
	Set linked Image. More...

bool	linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
	Link Image. More...

bool	unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
	Unlink Image. More...

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedMicrobeamManipulationList () const
	Get size of linked MicrobeamManipulation list. More...

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type	getLinkedMicrobeamManipulationList () const
	Get the linked MicrobeamManipulation list. More...

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > &	getLinkedMicrobeamManipulation (OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index) const
	Get linked MicrobeamManipulation. More...

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > &	setLinkedMicrobeamManipulation (OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)
	Set linked MicrobeamManipulation. More...

bool	linkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)
	Link MicrobeamManipulation. More...

bool	unlinkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)
	Unlink MicrobeamManipulation. More...

OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedProjectList () const
	Get size of linked Project list. More...

OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type	getLinkedProjectList () const
	Get the linked Project list. More...

const ome::compat::weak_ptr< ome::xml::model::Project > &	getLinkedProject (OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Project. More...

const ome::compat::weak_ptr< ome::xml::model::Project > &	setLinkedProject (OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)
	Set linked Project. More...

bool	linkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)
	Link Project. More...

bool	unlinkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)
	Unlink Project. More...

OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedExperimenterGroupList () const
	Get size of linked ExperimenterGroup list. More...

OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type	getLinkedExperimenterGroupList () const
	Get the linked ExperimenterGroup list. More...

const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > &	getLinkedExperimenterGroup (OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type index) const
	Get linked ExperimenterGroup. More...

const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > &	setLinkedExperimenterGroup (OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)
	Set linked ExperimenterGroup. More...

bool	linkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)
	Link ExperimenterGroup. More...

bool	unlinkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)
	Unlink ExperimenterGroup. More...

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedDatasetList () const
	Get size of linked Dataset list. More...

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type	getLinkedDatasetList () const
	Get the linked Dataset list. More...

const ome::compat::weak_ptr< ome::xml::model::Dataset > &	getLinkedDataset (OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Dataset. More...

const ome::compat::weak_ptr< ome::xml::model::Dataset > &	setLinkedDataset (OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
	Set linked Dataset. More...

bool	linkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
	Link Dataset. More...

bool	unlinkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
	Unlink Dataset. More...

OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedExperimentList () const
	Get size of linked Experiment list. More...

OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type	getLinkedExperimentList () const
	Get the linked Experiment list. More...

const ome::compat::weak_ptr< ome::xml::model::Experiment > &	getLinkedExperiment (OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Experiment. More...

const ome::compat::weak_ptr< ome::xml::model::Experiment > &	setLinkedExperiment (OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)
	Set linked Experiment. More...

bool	linkExperiment (const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)
	Link Experiment. More...

bool	unlinkExperiment (const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)
	Unlink Experiment. More...

virtual common::xml::dom::Element	asXMLElement (common::xml::dom::Document &document) const
	Transform the object hierarchy rooted at this element to XML. More...

const std::string &	getXMLNamespace () const
	Get the XML namespace for this model object. More...

Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
virtual	~OMEModelObject ()
	Destructor.

virtual void	update (const common::xml::dom::Element &element,::ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ::ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

Public Member Functions inherited from ome::xml::model::OMEModelObject
virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< OMEModelObject > &object)=0
	Link a given OME model object to this model object. More...

Static Public Member Functions
static ome::compat::shared_ptr< Experimenter >	create (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Create a Experimenter model object from DOM element. More...

Static Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
static std::vector< common::xml::dom::Element >	getChildrenByTagName (const common::xml::dom::Element &parent, const std::string &name)
	Retrieve all the children of an element that have a given tag name. More...

static std::string	stripNamespacePrefix (const std::string &value)
	Strip the namespace prefix from a tag name. More...

Protected Member Functions
virtual common::xml::dom::Element	asXMLElementInternal (common::xml::dom::Document &document, common::xml::dom::Element &element) const
	Transform the object hierarchy rooted at this element to XML. More...

Protected Member Functions inherited from ome::xml::model::detail::OMEModelObject
	OMEModelObject (const std::string &objectType="OMEModelObject")
	Constructor.

	OMEModelObject (const OMEModelObject &copy)
	Copy constructor. More...

template<class C , typename T >
bool	contains (const C &container, const ome::compat::shared_ptr< T > &element)
	Check if a container contains a particular element. More...

Protected Member Functions inherited from ome::xml::model::OMEModelObject
	OMEModelObject ()
	Constructor.

Private Attributes
ome::compat::shared_ptr< Impl >	impl
	Private implementation details.

Additional Inherited Members
Protected Attributes inherited from ome::xml::model::detail::OMEModelObject
ome::common::Logger	logger
	Message logger.

Detailed Description

Experimenter model object.

Constructor & Destructor Documentation

ome::xml::model::Experimenter::Experimenter ( const Experimenter & copy )

Copy constructor.

Parameters

copy	the Experimenter to copy.

Member Function Documentation

common::xml::dom::Element ome::xml::model::Experimenter::asXMLElement ( common::xml::dom::Document & document ) const

virtual

Transform the object hierarchy rooted at this element to XML.

Parameters

document document for element creation

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::OMEModelObject.

References asXMLElementInternal(), ome::common::xml::dom::Document::createElementNS(), and getXMLNamespace().

common::xml::dom::Element ome::xml::model::Experimenter::asXMLElementInternal	(	common::xml::dom::Document &	document,
		common::xml::dom::Element &	element
	)		const

protectedvirtual

Transform the object hierarchy rooted at this element to XML.

This internal implementation of asXMLelement also requires an XML element, which must not be null, or may be instantiated and passed from superclasses.

Parameters

document	XML document for element creation.
element	XML element for setting model data.

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::detail::OMEModelObject.

References ome::common::xml::dom::Node::appendChild(), ome::xml::model::detail::OMEModelObject::asXMLElementInternal(), ome::common::xml::dom::Document::createElementNS(), getXMLNamespace(), impl, and ome::common::xml::dom::Element::setAttribute().

Referenced by asXMLElement().

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ome::compat::shared_ptr< Experimenter > ome::xml::model::Experimenter::create	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

static

Create a Experimenter model object from DOM element.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Returns: a new model object.

Referenced by ome::xml::model::OME::update().

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const std::string & ome::xml::model::Experimenter::elementName ( ) const

virtual

Get the element name of this model object.

This will be the most-derived class name.

Returns: the element type.

Implements ome::xml::model::OMEModelObject.

ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getEmail ( )

Get the Email property.

Returns: the Email property.

References impl.

const ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getEmail ( ) const

Get the Email property.

Returns: the Email property.

References impl.

ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getFirstName ( )

Get the FirstName property.

Returns: the FirstName property.

References impl.

const ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getFirstName ( ) const

Get the FirstName property.

Returns: the FirstName property.

References impl.

const std::string & ome::xml::model::Experimenter::getID ( ) const

Get the ID property.

Returns: the ID property.

References impl.

Referenced by update().

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ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getInstitution ( )

Get the Institution property.

Returns: the Institution property.

References impl.

const ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getInstitution ( ) const

Get the Institution property.

Returns: the Institution property.

References impl.

ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getLastName ( )

Get the LastName property.

Returns: the LastName property.

References impl.

const ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getLastName ( ) const

Get the LastName property.

Returns: the LastName property.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Experimenter::getLinkedAnnotation ( OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Annotation.

Parameters

index the index number of the Annotation.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type ome::xml::model::Experimenter::getLinkedAnnotationList ( ) const

Get the linked Annotation list.

Returns: a reference to the list.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Dataset > & ome::xml::model::Experimenter::getLinkedDataset ( OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Dataset.

Parameters

index the index number of the Dataset.

Returns: a weak pointer to the Dataset.

Exceptions

std::out_of_range if the index is invalid.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type ome::xml::model::Experimenter::getLinkedDatasetList ( ) const

Get the linked Dataset list.

Returns: a reference to the list.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Experiment > & ome::xml::model::Experimenter::getLinkedExperiment ( OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Experiment.

Parameters

index the index number of the Experiment.

Returns: a weak pointer to the Experiment.

Exceptions

std::out_of_range if the index is invalid.

References impl.

const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > & ome::xml::model::Experimenter::getLinkedExperimenterGroup ( OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type index ) const

Get linked ExperimenterGroup.

Parameters

index the index number of the ExperimenterGroup.

Returns: a weak pointer to the ExperimenterGroup.

Exceptions

std::out_of_range if the index is invalid.

References impl.

OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type ome::xml::model::Experimenter::getLinkedExperimenterGroupList ( ) const

Get the linked ExperimenterGroup list.

Returns: a reference to the list.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type ome::xml::model::Experimenter::getLinkedExperimentList ( ) const

Get the linked Experiment list.

Returns: a reference to the list.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Image > & ome::xml::model::Experimenter::getLinkedImage ( OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Image.

Parameters

index the index number of the Image.

Returns: a weak pointer to the Image.

Exceptions

std::out_of_range if the index is invalid.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type ome::xml::model::Experimenter::getLinkedImageList ( ) const

Get the linked Image list.

Returns: a reference to the list.

References impl.

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > & ome::xml::model::Experimenter::getLinkedMicrobeamManipulation ( OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index ) const

Get linked MicrobeamManipulation.

Parameters

index the index number of the MicrobeamManipulation.

Returns: a weak pointer to the MicrobeamManipulation.

Exceptions

std::out_of_range if the index is invalid.

References impl.

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type ome::xml::model::Experimenter::getLinkedMicrobeamManipulationList ( ) const

Get the linked MicrobeamManipulation list.

Returns: a reference to the list.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Project > & ome::xml::model::Experimenter::getLinkedProject ( OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Project.

Parameters

index the index number of the Project.

Returns: a weak pointer to the Project.

Exceptions

std::out_of_range if the index is invalid.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type ome::xml::model::Experimenter::getLinkedProjectList ( ) const

Get the linked Project list.

Returns: a reference to the list.

References impl.

ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getMiddleName ( )

Get the MiddleName property.

Returns: the MiddleName property.

References impl.

const ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getMiddleName ( ) const

Get the MiddleName property.

Returns: the MiddleName property.

References impl.

ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getUserName ( )

Get the UserName property.

Returns: the UserName property.

References impl.

const ome::compat::shared_ptr< std::string > ome::xml::model::Experimenter::getUserName ( ) const

Get the UserName property.

Returns: the UserName property.

References impl.

const std::string & ome::xml::model::Experimenter::getXMLNamespace ( ) const

virtual

Get the XML namespace for this model object.

Returns: the XML namespace.

Implements ome::xml::model::OMEModelObject.

Referenced by asXMLElement(), and asXMLElementInternal().

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bool ome::xml::model::Experimenter::link	(	ome::compat::shared_ptr< Reference > &	reference,
		ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &	object
	)

Link a given OME model object to this model object.

Parameters

reference	type qualifier for the reference. This should be the corresponding reference type for object. If, for example, object is of type Image, reference must be of type ImageRef.
object	Model object to link to.

Returns: true if this model object was able to handle the reference, otherwise false.

Todo:: the use of reference to provide type information for the type of object is unconventional and quite possibly unnecessary–a simple string or type_info would suffice for what it's being used for, if it's needed at all. Is this true for all cases? The implementation also needs to do strict checking of the object type; it's not currently failing if it's of the wrong type. This applies to all generated model objects implementing this interface.

Todo:: This bit is silly; why do we have two dynamic_casts here.

References impl, ome::xml::model::detail::OMEModelObject::link(), ome::xml::model::Annotation::linkExperimenter(), and ome::xml::model::detail::OMEModelObject::logger.

bool ome::xml::model::Experimenter::linkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Link Annotation.

Parameters

annotation the Annotation to link.

Returns: true if the object was added to the internal annotationLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References impl.

bool ome::xml::model::Experimenter::linkDataset ( const ome::compat::shared_ptr< ome::xml::model::Dataset > & dataset_BackReference )

Link Dataset.

Parameters

dataset_BackReference the Dataset to link.

Returns: true if the object was added to the internal datasets list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References impl.

Referenced by ome::xml::model::Dataset::link().

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bool ome::xml::model::Experimenter::linkExperiment ( const ome::compat::shared_ptr< ome::xml::model::Experiment > & experiment_BackReference )

Link Experiment.

Parameters

experiment_BackReference the Experiment to link.

Returns: true if the object was added to the internal experiments list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References impl.

Referenced by ome::xml::model::Experiment::link().

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bool ome::xml::model::Experimenter::linkExperimenterGroup ( const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > & experimenterGroup_BackReference )

Link ExperimenterGroup.

Parameters

experimenterGroup_BackReference the ExperimenterGroup to link.

Returns: true if the object was added to the internal experimenterGroupLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References impl.

Referenced by ome::xml::model::ExperimenterGroup::link().

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bool ome::xml::model::Experimenter::linkImage ( const ome::compat::shared_ptr< ome::xml::model::Image > & image_BackReference )

Link Image.

Parameters

image_BackReference the Image to link.

Returns: true if the object was added to the internal images list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References impl.

Referenced by ome::xml::model::Image::link().

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bool ome::xml::model::Experimenter::linkMicrobeamManipulation ( const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > & microbeamManipulation_BackReference )

Link MicrobeamManipulation.

Parameters

microbeamManipulation_BackReference the MicrobeamManipulation to link.

Returns: true if the object was added to the internal microbeamManipulations list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References impl.

Referenced by ome::xml::model::MicrobeamManipulation::link().

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bool ome::xml::model::Experimenter::linkProject ( const ome::compat::shared_ptr< ome::xml::model::Project > & project_BackReference )

Link Project.

Parameters

project_BackReference the Project to link.

Returns: true if the object was added to the internal projects list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References impl.

Referenced by ome::xml::model::Project::link().

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void ome::xml::model::Experimenter::setEmail ( ome::compat::shared_ptr< std::string > & email )

Set the Email property.

Parameters

email the value to set.

References impl.

Referenced by update().

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void ome::xml::model::Experimenter::setFirstName ( ome::compat::shared_ptr< std::string > & firstName )

Set the FirstName property.

Parameters

firstName the value to set.

References impl.

Referenced by update().

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void ome::xml::model::Experimenter::setID ( const std::string & id )

Set the ID property.

Parameters

id	the value to set.

References impl.

Referenced by update().

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void ome::xml::model::Experimenter::setInstitution ( ome::compat::shared_ptr< std::string > & institution )

Set the Institution property.

Parameters

institution the value to set.

References impl.

Referenced by update().

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void ome::xml::model::Experimenter::setLastName ( ome::compat::shared_ptr< std::string > & lastName )

Set the LastName property.

Parameters

lastName the value to set.

References impl.

Referenced by update().

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const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Experimenter::setLinkedAnnotation	(	OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Annotation > &	annotation
	)

Set linked Annotation.

Note: The index must be valid.

Parameters

index	the index number of the Annotation.
annotation	the Annotation to set.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Dataset > & ome::xml::model::Experimenter::setLinkedDataset	(	OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Dataset > &	dataset_BackReference
	)

Set linked Dataset.

Note: The index must be valid.

Parameters

index	the index number of the Dataset.
dataset_BackReference	the Dataset to set.

Returns: a weak pointer to the Dataset.

Exceptions

std::out_of_range if the index is invalid.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Experiment > & ome::xml::model::Experimenter::setLinkedExperiment	(	OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Experiment > &	experiment_BackReference
	)

Set linked Experiment.

Note: The index must be valid.

Parameters

index	the index number of the Experiment.
experiment_BackReference	the Experiment to set.

Returns: a weak pointer to the Experiment.

Exceptions

std::out_of_range if the index is invalid.

References impl.

const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > & ome::xml::model::Experimenter::setLinkedExperimenterGroup	(	OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &	experimenterGroup_BackReference
	)

Set linked ExperimenterGroup.

Note: The index must be valid.

Parameters

index	the index number of the ExperimenterGroup.
experimenterGroup_BackReference	the ExperimenterGroup to set.

Returns: a weak pointer to the ExperimenterGroup.

Exceptions

std::out_of_range if the index is invalid.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Image > & ome::xml::model::Experimenter::setLinkedImage	(	OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Image > &	image_BackReference
	)

Set linked Image.

Note: The index must be valid.

Parameters

index	the index number of the Image.
image_BackReference	the Image to set.

Returns: a weak pointer to the Image.

Exceptions

std::out_of_range if the index is invalid.

References impl.

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > & ome::xml::model::Experimenter::setLinkedMicrobeamManipulation	(	OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &	microbeamManipulation_BackReference
	)

Set linked MicrobeamManipulation.

Note: The index must be valid.

Parameters

index	the index number of the MicrobeamManipulation.
microbeamManipulation_BackReference	the MicrobeamManipulation to set.

Returns: a weak pointer to the MicrobeamManipulation.

Exceptions

std::out_of_range if the index is invalid.

References impl.

const ome::compat::weak_ptr< ome::xml::model::Project > & ome::xml::model::Experimenter::setLinkedProject	(	OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Project > &	project_BackReference
	)

Set linked Project.

Note: The index must be valid.

Parameters

index	the index number of the Project.
project_BackReference	the Project to set.

Returns: a weak pointer to the Project.

Exceptions

std::out_of_range if the index is invalid.

References impl.

void ome::xml::model::Experimenter::setMiddleName ( ome::compat::shared_ptr< std::string > & middleName )

Set the MiddleName property.

Parameters

middleName the value to set.

References impl.

Referenced by update().

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void ome::xml::model::Experimenter::setUserName ( ome::compat::shared_ptr< std::string > & userName )

Set the UserName property.

Parameters

userName the value to set.

References impl.

Referenced by update().

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OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type ome::xml::model::Experimenter::sizeOfLinkedAnnotationList ( ) const

Get size of linked Annotation list.

Returns: the size of the list.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type ome::xml::model::Experimenter::sizeOfLinkedDatasetList ( ) const

Get size of linked Dataset list.

Returns: the size of the list.

References impl.

OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type ome::xml::model::Experimenter::sizeOfLinkedExperimenterGroupList ( ) const

Get size of linked ExperimenterGroup list.

Returns: the size of the list.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type ome::xml::model::Experimenter::sizeOfLinkedExperimentList ( ) const

Get size of linked Experiment list.

Returns: the size of the list.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type ome::xml::model::Experimenter::sizeOfLinkedImageList ( ) const

Get size of linked Image list.

Returns: the size of the list.

References impl.

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type ome::xml::model::Experimenter::sizeOfLinkedMicrobeamManipulationList ( ) const

Get size of linked MicrobeamManipulation list.

Returns: the size of the list.

References impl.

OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type ome::xml::model::Experimenter::sizeOfLinkedProjectList ( ) const

Get size of linked Project list.

Returns: the size of the list.

References impl.

bool ome::xml::model::Experimenter::unlinkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Unlink Annotation.

Parameters

annotation the Annotation to unlink.

Returns: true if the Annotation was unlinked, otherwise false if the Annotation was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References impl.

bool ome::xml::model::Experimenter::unlinkDataset ( const ome::compat::shared_ptr< ome::xml::model::Dataset > & dataset_BackReference )

Unlink Dataset.

Parameters

dataset_BackReference the Dataset to unlink.

Returns: true if the Dataset was unlinked, otherwise false if the Dataset was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References impl.

bool ome::xml::model::Experimenter::unlinkExperiment ( const ome::compat::shared_ptr< ome::xml::model::Experiment > & experiment_BackReference )

Unlink Experiment.

Parameters

experiment_BackReference the Experiment to unlink.

Returns: true if the Experiment was unlinked, otherwise false if the Experiment was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References impl.

bool ome::xml::model::Experimenter::unlinkExperimenterGroup ( const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > & experimenterGroup_BackReference )

Unlink ExperimenterGroup.

Parameters

experimenterGroup_BackReference the ExperimenterGroup to unlink.

Returns: true if the ExperimenterGroup was unlinked, otherwise false if the ExperimenterGroup was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References impl.

bool ome::xml::model::Experimenter::unlinkImage ( const ome::compat::shared_ptr< ome::xml::model::Image > & image_BackReference )

Unlink Image.

Parameters

image_BackReference the Image to unlink.

Returns: true if the Image was unlinked, otherwise false if the Image was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References impl.

bool ome::xml::model::Experimenter::unlinkMicrobeamManipulation ( const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > & microbeamManipulation_BackReference )

Unlink MicrobeamManipulation.

Parameters

microbeamManipulation_BackReference the MicrobeamManipulation to unlink.

Returns: true if the MicrobeamManipulation was unlinked, otherwise false if the MicrobeamManipulation was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References impl.

bool ome::xml::model::Experimenter::unlinkProject ( const ome::compat::shared_ptr< ome::xml::model::Project > & project_BackReference )

Unlink Project.

Parameters

project_BackReference the Project to unlink.

Returns: true if the Project was unlinked, otherwise false if the Project was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References impl.

void ome::xml::model::Experimenter::update	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

virtual

Update the object hierarchy recursively from an XML DOM tree.

Note: No properties are removed, only added or updated.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Implements ome::xml::model::OMEModelObject.

References ome::xml::model::OMEModel::addModelObject(), ome::xml::model::OMEModel::addReference(), ome::common::xml::dom::Element::getAttribute(), ome::xml::model::detail::OMEModelObject::getChildrenByTagName(), getID(), ome::common::xml::dom::Element::getTagName(), ome::common::xml::dom::Element::hasAttribute(), ome::xml::model::detail::OMEModelObject::logger, setEmail(), setFirstName(), setID(), setInstitution(), setLastName(), setMiddleName(), setUserName(), ome::xml::model::detail::OMEModelObject::stripNamespacePrefix(), ome::xml::model::detail::OMEModelObject::update(), and validElementName().