bioformats  5.1.8
Experimenter.h
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39 /*─────────────────────────────────────────────────────────────────────────────
40  *
41  * THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
42  *
43  *─────────────────────────────────────────────────────────────────────────────
44  */
45 
46 #ifndef OME_XML_MODEL_EXPERIMENTER_H
47 #define OME_XML_MODEL_EXPERIMENTER_H
48 
49 #include <algorithm>
50 #include <list>
51 #include <stdexcept>
52 #include <string>
53 #include <vector>
54 
55 #include <ome/common/log.h>
56 
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
61 
62 #include <ome/xml/model/detail/OMEModelObject.h>
63 
64 namespace ome
65 {
66  namespace xml
67  {
68  namespace model
69  {
70 
71  // Forward declarations.
72  class Annotation;
73  class Dataset;
74  class Experiment;
75  class ExperimenterGroup;
76  class Image;
77  class MicrobeamManipulation;
78  class OMEModel;
79  class Project;
80 
85  {
86  private:
87  class Impl;
89  ome::compat::shared_ptr<Impl> impl;
90 
91  public:
93  Experimenter();
94 
100  Experimenter (const Experimenter& copy);
101 
103  virtual
104  ~Experimenter ();
105 
120  static ome::compat::shared_ptr< Experimenter>
121  create(const common::xml::dom::Element& element,
123 
124  // Documented in superclass.
125  const std::string&
126  elementName() const;
127 
128  // Documented in superclass.
129  bool
130  validElementName(const std::string& name) const;
131 
132 
133  // -- OMEModelObject API methods --
134 
136  virtual void
137  update(const common::xml::dom::Element& element,
139 
140  public:
141  // -- Experimenter API methods --
142 
144  bool
145  link (ome::compat::shared_ptr<Reference>& reference,
146  ome::compat::shared_ptr< ome::xml::model::OMEModelObject>& object);
147 
153  ome::compat::shared_ptr<std::string>
154  getEmail ();
155 
161  const ome::compat::shared_ptr<std::string>
162  getEmail () const;
163 
169  void
170  setEmail (ome::compat::shared_ptr<std::string>& email);
171 
177  ome::compat::shared_ptr<std::string>
178  getUserName ();
179 
185  const ome::compat::shared_ptr<std::string>
186  getUserName () const;
187 
193  void
194  setUserName (ome::compat::shared_ptr<std::string>& userName);
195 
201  ome::compat::shared_ptr<std::string>
202  getFirstName ();
203 
209  const ome::compat::shared_ptr<std::string>
210  getFirstName () const;
211 
217  void
218  setFirstName (ome::compat::shared_ptr<std::string>& firstName);
219 
225  ome::compat::shared_ptr<std::string>
226  getMiddleName ();
227 
233  const ome::compat::shared_ptr<std::string>
234  getMiddleName () const;
235 
241  void
242  setMiddleName (ome::compat::shared_ptr<std::string>& middleName);
243 
249  ome::compat::shared_ptr<std::string>
250  getLastName ();
251 
257  const ome::compat::shared_ptr<std::string>
258  getLastName () const;
259 
265  void
266  setLastName (ome::compat::shared_ptr<std::string>& lastName);
267 
273  const std::string&
274  getID () const;
275 
281  void
282  setID (const std::string& id);
283 
289  ome::compat::shared_ptr<std::string>
290  getInstitution ();
291 
297  const ome::compat::shared_ptr<std::string>
298  getInstitution () const;
299 
305  void
306  setInstitution (ome::compat::shared_ptr<std::string>& institution);
307 
315 
322  getLinkedAnnotationList () const;
323 
331  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
333 
344  const ome::compat::weak_ptr<ome::xml::model::Annotation>&
346  const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
347 
358  bool
359  linkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
360 
376  bool
377  unlinkAnnotation (const ome::compat::shared_ptr<ome::xml::model::Annotation>& annotation);
378 
385  sizeOfLinkedImageList () const;
386 
393  getLinkedImageList () const;
394 
402  const ome::compat::weak_ptr<ome::xml::model::Image>&
404 
415  const ome::compat::weak_ptr<ome::xml::model::Image>&
417  const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
418 
429  bool
430  linkImage (const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
431 
447  bool
448  unlinkImage (const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
449 
457 
465 
473  const ome::compat::weak_ptr<ome::xml::model::MicrobeamManipulation>&
475 
486  const ome::compat::weak_ptr<ome::xml::model::MicrobeamManipulation>&
488  const ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>& microbeamManipulation_BackReference);
489 
500  bool
501  linkMicrobeamManipulation (const ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>& microbeamManipulation_BackReference);
502 
518  bool
519  unlinkMicrobeamManipulation (const ome::compat::shared_ptr<ome::xml::model::MicrobeamManipulation>& microbeamManipulation_BackReference);
520 
527  sizeOfLinkedProjectList () const;
528 
535  getLinkedProjectList () const;
536 
544  const ome::compat::weak_ptr<ome::xml::model::Project>&
546 
557  const ome::compat::weak_ptr<ome::xml::model::Project>&
559  const ome::compat::shared_ptr<ome::xml::model::Project>& project_BackReference);
560 
571  bool
572  linkProject (const ome::compat::shared_ptr<ome::xml::model::Project>& project_BackReference);
573 
589  bool
590  unlinkProject (const ome::compat::shared_ptr<ome::xml::model::Project>& project_BackReference);
591 
599 
607 
615  const ome::compat::weak_ptr<ome::xml::model::ExperimenterGroup>&
617 
628  const ome::compat::weak_ptr<ome::xml::model::ExperimenterGroup>&
630  const ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>& experimenterGroup_BackReference);
631 
642  bool
643  linkExperimenterGroup (const ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>& experimenterGroup_BackReference);
644 
660  bool
661  unlinkExperimenterGroup (const ome::compat::shared_ptr<ome::xml::model::ExperimenterGroup>& experimenterGroup_BackReference);
662 
669  sizeOfLinkedDatasetList () const;
670 
677  getLinkedDatasetList () const;
678 
686  const ome::compat::weak_ptr<ome::xml::model::Dataset>&
688 
699  const ome::compat::weak_ptr<ome::xml::model::Dataset>&
701  const ome::compat::shared_ptr<ome::xml::model::Dataset>& dataset_BackReference);
702 
713  bool
714  linkDataset (const ome::compat::shared_ptr<ome::xml::model::Dataset>& dataset_BackReference);
715 
731  bool
732  unlinkDataset (const ome::compat::shared_ptr<ome::xml::model::Dataset>& dataset_BackReference);
733 
741 
748  getLinkedExperimentList () const;
749 
757  const ome::compat::weak_ptr<ome::xml::model::Experiment>&
759 
770  const ome::compat::weak_ptr<ome::xml::model::Experiment>&
772  const ome::compat::shared_ptr<ome::xml::model::Experiment>& experiment_BackReference);
773 
784  bool
785  linkExperiment (const ome::compat::shared_ptr<ome::xml::model::Experiment>& experiment_BackReference);
786 
802  bool
803  unlinkExperiment (const ome::compat::shared_ptr<ome::xml::model::Experiment>& experiment_BackReference);
804 
805 
808  asXMLElement (common::xml::dom::Document& document) const;
809 
810 
811  protected:
812  // Documented in base class.
815  common::xml::dom::Element& element) const;
816 
817  public:
818  // Documented in superclass.
819  const std::string&
820  getXMLNamespace() const;
821  };
822 
823  }
824  }
825 }
826 
827 #endif // OME_XML_MODEL_EXPERIMENTER_H
828 
829 /*
830  * Local Variables:
831  * mode:C++
832  * End:
833  */
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
ome::compat::shared_ptr< std::string > getFirstName()
Get the FirstName property.
Definition: Experimenter.cpp:424
void setFirstName(ome::compat::shared_ptr< std::string > &firstName)
Set the FirstName property.
Definition: Experimenter.cpp:438
void setID(const std::string &id)
Set the ID property.
Definition: Experimenter.cpp:494
virtual ~Experimenter()
Destructor.
Definition: Experimenter.cpp:228
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: Experimenter.cpp:1067
const ome::compat::weak_ptr< ome::xml::model::Image > & setLinkedImage(OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Set linked Image.
Definition: Experimenter.cpp:600
bool linkImage(const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Link Image.
Definition: Experimenter.cpp:610
const ome::compat::weak_ptr< ome::xml::model::Dataset > & setLinkedDataset(OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
Set linked Dataset.
Definition: Experimenter.cpp:832
bool unlinkImage(const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Unlink Image.
Definition: Experimenter.cpp:623
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type getLinkedAnnotationList() const
Get the linked Annotation list.
Definition: Experimenter.cpp:528
ome::compat::shared_ptr< Impl > impl
Private implementation details.
Definition: Experimenter.h:87
OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type sizeOfLinkedExperimenterGroupList() const
Get size of linked ExperimenterGroup list.
Definition: Experimenter.cpp:756
Experimenter()
Default constructor.
Definition: Experimenter.cpp:209
const ome::compat::weak_ptr< ome::xml::model::Project > & getLinkedProject(OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type index) const
Get linked Project.
Definition: Experimenter.cpp:710
const ome::compat::weak_ptr< ome::xml::model::Annotation > & getLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
Get linked Annotation.
Definition: Experimenter.cpp:534
ome::compat::shared_ptr< std::string > getEmail()
Get the Email property.
Definition: Experimenter.cpp:382
OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type getLinkedImageList() const
Get the linked Image list.
Definition: Experimenter.cpp:588
OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedMicrobeamManipulationList() const
Get size of linked MicrobeamManipulation list.
Definition: Experimenter.cpp:640
OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type sizeOfLinkedImageList() const
Get size of linked Image list.
Definition: Experimenter.cpp:582
bool unlinkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Unlink Annotation.
Definition: Experimenter.cpp:564
DOM Document wrapper.
Definition: Document.h:83
DOM Element wrapper.
Definition: Element.h:66
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
void setLastName(ome::compat::shared_ptr< std::string > &lastName)
Set the LastName property.
Definition: Experimenter.cpp:480
const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > & getLinkedExperimenterGroup(OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type index) const
Get linked ExperimenterGroup.
Definition: Experimenter.cpp:768
bool unlinkDataset(const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
Unlink Dataset.
Definition: Experimenter.cpp:855
bool unlinkProject(const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)
Unlink Project.
Definition: Experimenter.cpp:739
bool linkExperimenterGroup(const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)
Link ExperimenterGroup.
Definition: Experimenter.cpp:784
OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type getLinkedMicrobeamManipulationList() const
Get the linked MicrobeamManipulation list.
Definition: Experimenter.cpp:646
OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type sizeOfLinkedAnnotationList() const
Get size of linked Annotation list.
Definition: Experimenter.cpp:522
const ome::compat::weak_ptr< ome::xml::model::Project > & setLinkedProject(OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)
Set linked Project.
Definition: Experimenter.cpp:716
bool linkMicrobeamManipulation(const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)
Link MicrobeamManipulation.
Definition: Experimenter.cpp:668
Experimenter model object.
Definition: Experimenter.h:84
void setInstitution(ome::compat::shared_ptr< std::string > &institution)
Set the Institution property.
Definition: Experimenter.cpp:515
OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type::size_type sizeOfLinkedProjectList() const
Get size of linked Project list.
Definition: Experimenter.cpp:698
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
const ome::compat::weak_ptr< ome::xml::model::Image > & getLinkedImage(OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index) const
Get linked Image.
Definition: Experimenter.cpp:594
const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > & getLinkedMicrobeamManipulation(OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index) const
Get linked MicrobeamManipulation.
Definition: Experimenter.cpp:652
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
ome::compat::shared_ptr< std::string > getLastName()
Get the LastName property.
Definition: Experimenter.cpp:466
OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type getLinkedExperimentList() const
Get the linked Experiment list.
Definition: Experimenter.cpp:878
const ome::compat::weak_ptr< ome::xml::model::Experiment > & getLinkedExperiment(OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type index) const
Get linked Experiment.
Definition: Experimenter.cpp:884
const std::string & elementName() const
Get the element name of this model object.
Definition: Experimenter.cpp:242
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: Experimenter.cpp:930
OMEModelObject::indexed_container< ome::xml::model::Project, ome::compat::weak_ptr >::type getLinkedProjectList() const
Get the linked Project list.
Definition: Experimenter.cpp:704
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: Experimenter.cpp:937
void setMiddleName(ome::compat::shared_ptr< std::string > &middleName)
Set the MiddleName property.
Definition: Experimenter.cpp:459
OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type getLinkedExperimenterGroupList() const
Get the linked ExperimenterGroup list.
Definition: Experimenter.cpp:762
void setEmail(ome::compat::shared_ptr< std::string > &email)
Set the Email property.
Definition: Experimenter.cpp:396
OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type sizeOfLinkedExperimentList() const
Get size of linked Experiment list.
Definition: Experimenter.cpp:872
bool linkAnnotation(const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Link Annotation.
Definition: Experimenter.cpp:550
const ome::compat::weak_ptr< ome::xml::model::Annotation > & setLinkedAnnotation(OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
Set linked Annotation.
Definition: Experimenter.cpp:540
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: Experimenter.cpp:351
bool unlinkExperimenterGroup(const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)
Unlink ExperimenterGroup.
Definition: Experimenter.cpp:797
ome::compat::shared_ptr< std::string > getInstitution()
Get the Institution property.
Definition: Experimenter.cpp:501
Private implementation details of Experimenter model object.
Definition: Experimenter.cpp:78
ome::compat::shared_ptr< std::string > getMiddleName()
Get the MiddleName property.
Definition: Experimenter.cpp:445
const std::string & getID() const
Get the ID property.
Definition: Experimenter.cpp:487
const ome::compat::weak_ptr< ome::xml::model::Experiment > & setLinkedExperiment(OMEModelObject::indexed_container< ome::xml::model::Experiment, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)
Set linked Experiment.
Definition: Experimenter.cpp:890
const ome::compat::weak_ptr< ome::xml::model::Dataset > & getLinkedDataset(OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index) const
Get linked Dataset.
Definition: Experimenter.cpp:826
static ome::compat::shared_ptr< Experimenter > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a Experimenter model object from DOM element.
Definition: Experimenter.cpp:233
bool linkExperiment(const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)
Link Experiment.
Definition: Experimenter.cpp:900
const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > & setLinkedExperimenterGroup(OMEModelObject::indexed_container< ome::xml::model::ExperimenterGroup, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)
Set linked ExperimenterGroup.
Definition: Experimenter.cpp:774
OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type getLinkedDatasetList() const
Get the linked Dataset list.
Definition: Experimenter.cpp:820
ome::compat::shared_ptr< std::string > getUserName()
Get the UserName property.
Definition: Experimenter.cpp:403
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: Experimenter.cpp:258
void setUserName(ome::compat::shared_ptr< std::string > &userName)
Set the UserName property.
Definition: Experimenter.cpp:417
Boost.Log compatibility.
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: Experimenter.cpp:249
bool unlinkExperiment(const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)
Unlink Experiment.
Definition: Experimenter.cpp:913
bool unlinkMicrobeamManipulation(const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)
Unlink MicrobeamManipulation.
Definition: Experimenter.cpp:681
bool linkProject(const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)
Link Project.
Definition: Experimenter.cpp:726
OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type sizeOfLinkedDatasetList() const
Get size of linked Dataset list.
Definition: Experimenter.cpp:814
const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > & setLinkedMicrobeamManipulation(OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)
Set linked MicrobeamManipulation.
Definition: Experimenter.cpp:658
bool linkDataset(const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
Link Dataset.
Definition: Experimenter.cpp:842
Xerces-C modern C++ wrapper.
Definition: Base.h:53