Todo List

Class ome::bioformats::CoreMetadata

We may want to consider refactoring the FormatReader getter methods that fill in missing CoreMetadata fields on the fly (getThumbSizeX, getThumbSizeY) to avoid doing so – one alternate approach would be to have this class use getter methods instead of public fields.

Member ome::bioformats::createOMEXMLRoot (const std::string &document)

Implement model transforms.

Member ome::bioformats::detail::CopySubchannelVisitor::operator() (const T &v)

Only call setBuffer if the shape and pixel type differ, to allow user control over storage order.

Member ome::bioformats::detail::FormatReader::coreIndex

Remove use of stateful API which requires use of series switching in const methods.

Member ome::bioformats::detail::FormatReader::getBitsPerPixel () const

: Move this logic into a CoreMetadata accessor. Why are we modifying coremetadata during an explicitly nonmodifying operation??

Member ome::bioformats::detail::FormatReader::isUsedFile (const boost::filesystem::path &file)

: Use a set rather than a list?

Member ome::bioformats::detail::FormatReader::openThumbBytes (dimension_size_type plane, VariantPixelBuffer &buf) const

Implement openThumbBytes. This requires implementing image rescaling/resampling.

Member ome::bioformats::detail::FormatReader::plane

Remove use of stateful API which requires use of series switching in const methods.

Member ome::bioformats::detail::FormatReader::resolution

Remove use of stateful API which requires use of series switching in const methods.

Member ome::bioformats::detail::FormatReader::series

Remove use of stateful API which requires use of series switching in const methods.

Member ome::bioformats::detail::FormatReader::setId (const boost::filesystem::path &id)

Implement addModuloAlong. Requires bits of MetadataTools OMEXMLServiceImpl.

Member ome::bioformats::FileInfo::reader

Document factory function to create reader.

Member ome::bioformats::FormatHandler::isThisType (const boost::filesystem::path &name, bool open=true) const =0

Could this method be static?

Member ome::bioformats::FormatReader::getIndex (dimension_size_type z, dimension_size_type c, dimension_size_type t) const =0

unify with the pixel buffer dimension indexes.

Don't use separate values to match the return of getZCTCoords.

Member ome::bioformats::FormatReader::getIndex (dimension_size_type z, dimension_size_type c, dimension_size_type t, dimension_size_type moduloZ, dimension_size_type moduloC, dimension_size_type moduloT) const =0

unify with the pixel buffer dimension indexes.

Don't use separate values to match the return of getZCTModuloCoords.

Member ome::bioformats::FormatReader::getPossibleDomains (const std::string &id) const =0

can this be a reference to static data?

Member ome::bioformats::FormatReader::getRequiredDirectories (const std::vector< std::string > &files) const =0

This could use a much better explanation, it's not at all clear what the return value means. Is it an index into files? Is it an index into the path components? Of which of the files? In which order? From the root or common parent? Is the order of files important?

Member ome::bioformats::FormatReader::getZCTCoords (dimension_size_type index) const =0

unify with the pixel buffer dimension indexes.

Member ome::bioformats::FormatReader::getZCTModuloCoords (dimension_size_type index) const =0

unify with the pixel buffer dimension indexes.

Member ome::bioformats::FormatReader::isOriginalMetadataPopulated () const =0

The name of this method is awful.

Member ome::bioformats::FormatReader::isThisType (const uint8_t *begin, const uint8_t *end) const =0

Could this method be static and/or const?

Member ome::bioformats::FormatReader::isThisType (const uint8_t *begin, std::size_t length) const =0

Could this method be static and/or const?

Member ome::bioformats::FormatReader::isThisType (std::istream &stream) const =0

Could this method be static and/or const?

Member ome::bioformats::FormatReader::setCoreIndex (dimension_size_type index) const =0

Remove use of stateful API which requires use of series switching in const methods.

Member ome::bioformats::FormatReader::setPlane (dimension_size_type plane) const =0

Remove use of stateful API which requires use of plane switching in const methods.

Member ome::bioformats::FormatReader::setResolution (dimension_size_type resolution) const =0

Remove use of stateful API which requires use of series switching in const methods.

Member ome::bioformats::FormatReader::setSeries (dimension_size_type series) const =0

Remove use of stateful API which requires use of series switching in const methods.

Class ome::bioformats::FormatWriter

Implement saveBytes methods using 2D Region with and/or in terms of Boost.MultiArray index ranges.

Member ome::bioformats::FormatWriter::setPlane (dimension_size_type plane) const =0

Remove use of stateful API which requires use of plane switching in const methods.

Member ome::bioformats::FormatWriter::setSeries (dimension_size_type series) const =0

Remove use of stateful API which requires use of series switching in const methods.

Member ome::bioformats::getOriginalMetadata (ome::xml::meta::OMEXMLMetadata &omexml)

log error

Member ome::bioformats::in::OMETIFFReader::close (bool fileOnly=false)

Member ome::bioformats::in::OMETIFFReader::initFile (const boost::filesystem::path &id)

Log.

Member ome::bioformats::Modulo::size () const

Use proper rounding (compat function for round(3)).

Member ome::bioformats::out::OMETIFFWriter::originalMetadataRetrieve

Overriding getMetadataRetrieve will be a cleaner solution, but need to eliminate all direct use of metadataRetrieve in all writers first.

Class ome::bioformats::PixelBuffer< T >

Add support for subsetting dimensions.

Member ome::bioformats::tiff::FieldBase::readCount () const

: Check TIFF_VARIABLE/TIFF_VARIABLE2/TIFF_SPP and adjust the return value accordingly.

Member ome::bioformats::tiff::FieldBase::writeCount () const

: Check TIFF_VARIABLE/TIFF_VARIABLE2/TIFF_SPP and adjust the return value accordingly.

Member ome::bioformats::tiff::getCoreMetadata (const IFD &ifd, CoreMetadata &core)

EXIF IFDs

Text stream output for Tag enums.

Metadata type for PhotometricInterpretation.

Image orientation (storage order and direction) from ORIENTATION; fix up width and length from orientation.

Only set if debugging/verbose.

Only set if debugging/verbose.

sminsamplevalue

smaxsamplevalue

Only set if debugging/verbose.

JPEG tags

Text stream output for Tag enums.

Metadata type for PhotometricInterpretation.

Image orientation (storage order and direction) from ORIENTATION; fix up width and length from orientation.

Only set if debugging/verbose.

Only set if debugging/verbose.

sminsamplevalue

smaxsamplevalue

Only set if debugging/verbose.

JPEG tags

Text stream output for Tag enums.

Metadata type for PhotometricInterpretation.

Image orientation (storage order and direction) from ORIENTATION; fix up width and length from orientation.

Only set if debugging/verbose.

Only set if debugging/verbose.

sminsamplevalue

smaxsamplevalue

Only set if debugging/verbose.

JPEG tags

Member ome::bioformats::tiff::TIFF::Impl::~Impl ()

Log the error elsewhere.

Member ome::bioformats::transformToLatestModelVersion (const std::string &document)

Implement model transforms.

Class ome::bioformats::VariantPixelBuffer

Add support for subsetting dimensions.

Member ome::qtwidgets::GLView2D::Camera::zoomfactor () const

remove fixed size.

Member ome::xml::meta::FilterMetadata::setArcID (std::string id, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setArcLotNumber (std::string lotNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setArcManufacturer (std::string manufacturer, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setArcModel (std::string model, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setArcSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setBinaryFileFileName (std::string fileName, index_type fileAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setBinaryFileMIMEType (std::string mimeType, index_type fileAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setBooleanAnnotationAnnotator (std::string annotator, index_type booleanAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setBooleanAnnotationDescription (std::string description, index_type booleanAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setBooleanAnnotationID (std::string id, index_type booleanAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setBooleanAnnotationNamespace (std::string namespace_, index_type booleanAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setChannelFluor (std::string fluor, index_type imageIndex, index_type channelIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setChannelID (std::string id, index_type imageIndex, index_type channelIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setChannelLightSourceSettingsID (std::string id, index_type imageIndex, index_type channelIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setChannelName (std::string name, index_type imageIndex, index_type channelIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setCommentAnnotationAnnotator (std::string annotator, index_type commentAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setCommentAnnotationDescription (std::string description, index_type commentAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setCommentAnnotationID (std::string id, index_type commentAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setCommentAnnotationNamespace (std::string namespace_, index_type commentAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setCommentAnnotationValue (std::string value, index_type commentAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDatasetDescription (std::string description, index_type datasetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDatasetID (std::string id, index_type datasetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDatasetName (std::string name, index_type datasetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDetectorID (std::string id, index_type instrumentIndex, index_type detectorIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDetectorLotNumber (std::string lotNumber, index_type instrumentIndex, index_type detectorIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDetectorManufacturer (std::string manufacturer, index_type instrumentIndex, index_type detectorIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDetectorModel (std::string model, index_type instrumentIndex, index_type detectorIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDetectorSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type detectorIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDetectorSettingsID (std::string id, index_type imageIndex, index_type channelIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDichroicID (std::string id, index_type instrumentIndex, index_type dichroicIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDichroicLotNumber (std::string lotNumber, index_type instrumentIndex, index_type dichroicIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDichroicManufacturer (std::string manufacturer, index_type instrumentIndex, index_type dichroicIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDichroicModel (std::string model, index_type instrumentIndex, index_type dichroicIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDichroicSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type dichroicIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDoubleAnnotationAnnotator (std::string annotator, index_type doubleAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDoubleAnnotationDescription (std::string description, index_type doubleAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDoubleAnnotationID (std::string id, index_type doubleAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setDoubleAnnotationNamespace (std::string namespace_, index_type doubleAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setEllipseID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setEllipseStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setEllipseText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimentDescription (std::string description, index_type experimentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterEmail (std::string email, index_type experimenterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterFirstName (std::string firstName, index_type experimenterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterGroupDescription (std::string description, index_type experimenterGroupIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterGroupID (std::string id, index_type experimenterGroupIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterGroupName (std::string name, index_type experimenterGroupIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterID (std::string id, index_type experimenterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterInstitution (std::string institution, index_type experimenterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterLastName (std::string lastName, index_type experimenterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterMiddleName (std::string middleName, index_type experimenterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimenterUserName (std::string userName, index_type experimenterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setExperimentID (std::string id, index_type experimentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilamentID (std::string id, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilamentLotNumber (std::string lotNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilamentManufacturer (std::string manufacturer, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilamentModel (std::string model, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilamentSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFileAnnotationAnnotator (std::string annotator, index_type fileAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFileAnnotationDescription (std::string description, index_type fileAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFileAnnotationID (std::string id, index_type fileAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFileAnnotationNamespace (std::string namespace_, index_type fileAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterFilterWheel (std::string filterWheel, index_type instrumentIndex, index_type filterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterID (std::string id, index_type instrumentIndex, index_type filterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterLotNumber (std::string lotNumber, index_type instrumentIndex, index_type filterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterManufacturer (std::string manufacturer, index_type instrumentIndex, index_type filterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterModel (std::string model, index_type instrumentIndex, index_type filterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type filterIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterSetID (std::string id, index_type instrumentIndex, index_type filterSetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterSetLotNumber (std::string lotNumber, index_type instrumentIndex, index_type filterSetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterSetManufacturer (std::string manufacturer, index_type instrumentIndex, index_type filterSetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterSetModel (std::string model, index_type instrumentIndex, index_type filterSetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setFilterSetSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type filterSetIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setImageDescription (std::string description, index_type imageIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setImageID (std::string id, index_type imageIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setImageName (std::string name, index_type imageIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setInstrumentID (std::string id, index_type instrumentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLabelID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLabelStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLabelText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLaserID (std::string id, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLaserLotNumber (std::string lotNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLaserManufacturer (std::string manufacturer, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLaserModel (std::string model, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLaserSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLightEmittingDiodeID (std::string id, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLightEmittingDiodeLotNumber (std::string lotNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLightEmittingDiodeManufacturer (std::string manufacturer, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLightEmittingDiodeModel (std::string model, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLightEmittingDiodeSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type lightSourceIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLineID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLineStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLineText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setListAnnotationAnnotator (std::string annotator, index_type listAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setListAnnotationDescription (std::string description, index_type listAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setListAnnotationID (std::string id, index_type listAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setListAnnotationNamespace (std::string namespace_, index_type listAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLongAnnotationAnnotator (std::string annotator, index_type longAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLongAnnotationDescription (std::string description, index_type longAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLongAnnotationID (std::string id, index_type longAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setLongAnnotationNamespace (std::string namespace_, index_type longAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMaskID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMaskStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMaskText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMicrobeamManipulationDescription (std::string description, index_type experimentIndex, index_type microbeamManipulationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMicrobeamManipulationID (std::string id, index_type experimentIndex, index_type microbeamManipulationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMicrobeamManipulationLightSourceSettingsID (std::string id, index_type experimentIndex, index_type microbeamManipulationIndex, index_type lightSourceSettingsIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMicroscopeLotNumber (std::string lotNumber, index_type instrumentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMicroscopeManufacturer (std::string manufacturer, index_type instrumentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMicroscopeModel (std::string model, index_type instrumentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setMicroscopeSerialNumber (std::string serialNumber, index_type instrumentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setObjectiveID (std::string id, index_type instrumentIndex, index_type objectiveIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setObjectiveLotNumber (std::string lotNumber, index_type instrumentIndex, index_type objectiveIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setObjectiveManufacturer (std::string manufacturer, index_type instrumentIndex, index_type objectiveIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setObjectiveModel (std::string model, index_type instrumentIndex, index_type objectiveIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setObjectiveSerialNumber (std::string serialNumber, index_type instrumentIndex, index_type objectiveIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setObjectiveSettingsID (std::string id, index_type imageIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPixelsID (std::string id, index_type imageIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlaneHashSHA1 (std::string hashSHA1, index_type imageIndex, index_type planeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateAcquisitionDescription (std::string description, index_type plateIndex, index_type plateAcquisitionIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateAcquisitionID (std::string id, index_type plateIndex, index_type plateAcquisitionIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateAcquisitionName (std::string name, index_type plateIndex, index_type plateAcquisitionIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateDescription (std::string description, index_type plateIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateExternalIdentifier (std::string externalIdentifier, index_type plateIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateID (std::string id, index_type plateIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateName (std::string name, index_type plateIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPlateStatus (std::string status, index_type plateIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPointID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPointStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPointText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolygonID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolygonPoints (std::string points, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolygonStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolygonText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolylineID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolylinePoints (std::string points, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolylineStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setPolylineText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setProjectDescription (std::string description, index_type projectIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setProjectID (std::string id, index_type projectIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setProjectName (std::string name, index_type projectIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setReagentDescription (std::string description, index_type screenIndex, index_type reagentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setReagentID (std::string id, index_type screenIndex, index_type reagentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setReagentName (std::string name, index_type screenIndex, index_type reagentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setReagentReagentIdentifier (std::string reagentIdentifier, index_type screenIndex, index_type reagentIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setRectangleID (std::string id, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setRectangleStrokeDashArray (std::string strokeDashArray, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setRectangleText (std::string text, index_type ROIIndex, index_type shapeIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setROIDescription (std::string description, index_type ROIIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setROIID (std::string id, index_type ROIIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setROIName (std::string name, index_type ROIIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setROINamespace (std::string namespace_, index_type ROIIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenDescription (std::string description, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenID (std::string id, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenName (std::string name, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenProtocolDescription (std::string protocolDescription, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenProtocolIdentifier (std::string protocolIdentifier, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenReagentSetDescription (std::string reagentSetDescription, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenReagentSetIdentifier (std::string reagentSetIdentifier, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setScreenType (std::string type, index_type screenIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setStageLabelName (std::string name, index_type imageIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTagAnnotationAnnotator (std::string annotator, index_type tagAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTagAnnotationDescription (std::string description, index_type tagAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTagAnnotationID (std::string id, index_type tagAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTagAnnotationNamespace (std::string namespace_, index_type tagAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTagAnnotationValue (std::string value, index_type tagAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTermAnnotationAnnotator (std::string annotator, index_type termAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTermAnnotationDescription (std::string description, index_type termAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTermAnnotationID (std::string id, index_type termAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTermAnnotationNamespace (std::string namespace_, index_type termAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTermAnnotationValue (std::string value, index_type termAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTimestampAnnotationAnnotator (std::string annotator, index_type timestampAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTimestampAnnotationDescription (std::string description, index_type timestampAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTimestampAnnotationID (std::string id, index_type timestampAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setTimestampAnnotationNamespace (std::string namespace_, index_type timestampAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setUUIDFileName (std::string fileName, index_type imageIndex, index_type tiffDataIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setWellExternalDescription (std::string externalDescription, index_type plateIndex, index_type wellIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setWellExternalIdentifier (std::string externalIdentifier, index_type plateIndex, index_type wellIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setWellID (std::string id, index_type plateIndex, index_type wellIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setWellSampleID (std::string id, index_type plateIndex, index_type wellIndex, index_type wellSampleIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setWellType (std::string type, index_type plateIndex, index_type wellIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setXMLAnnotationAnnotator (std::string annotator, index_type XMLAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setXMLAnnotationDescription (std::string description, index_type XMLAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setXMLAnnotationID (std::string id, index_type XMLAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setXMLAnnotationNamespace (std::string namespace_, index_type XMLAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::FilterMetadata::setXMLAnnotationValue (std::string value, index_type XMLAnnotationIndex)

: Implement DataTools.sanitize if needed for C++

Member ome::xml::meta::MetadataRetrieve::getLightSourceType (index_type instrumentIndex, index_type lightSourceIndex) const =0

Can this be a const reference?

Member ome::xml::meta::MetadataRetrieve::getShapeType (index_type roiIndex, index_type shapeIndex) const =0

Can this be a const reference?

Member ome::xml::meta::MetadataRetrieve::getUUID () const =0

Can this be a const reference?

Member ome::xml::meta::MetadataStore::getRoot ()=0

should this be a reference or shared_ptr?

Member ome::xml::meta::MetadataStore::setRoot (ome::compat::shared_ptr< MetadataRoot > &root)=0

should this be a reference or shared_ptr?

Member ome::xml::meta::OMEXMLMetadata::getBooleanAnnotationAnnotationRef (index_type booleanAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getChannelAnnotationRef (index_type imageIndex, index_type channelIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getCommentAnnotationAnnotationRef (index_type commentAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getDatasetAnnotationRef (index_type datasetIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getDatasetImageRef (index_type datasetIndex, index_type imageRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getDoubleAnnotationAnnotationRef (index_type doubleAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getExperimenterAnnotationRef (index_type experimenterIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getExperimenterGroupAnnotationRef (index_type experimenterGroupIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getExperimenterGroupExperimenterRef (index_type experimenterGroupIndex, index_type experimenterRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getExperimenterGroupLeader (index_type experimenterGroupIndex, index_type leaderIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getFileAnnotationAnnotationRef (index_type fileAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getFilterSetEmissionFilterRef (index_type instrumentIndex, index_type filterSetIndex, index_type emissionFilterRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getFilterSetExcitationFilterRef (index_type instrumentIndex, index_type filterSetIndex, index_type excitationFilterRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getImageAnnotationRef (index_type imageIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getImageMicrobeamManipulationRef (index_type imageIndex, index_type microbeamManipulationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getImageROIRef (index_type imageIndex, index_type ROIRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getLightPathEmissionFilterRef (index_type imageIndex, index_type channelIndex, index_type emissionFilterRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getLightPathExcitationFilterRef (index_type imageIndex, index_type channelIndex, index_type excitationFilterRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getListAnnotationAnnotationRef (index_type listAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getLongAnnotationAnnotationRef (index_type longAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getMicrobeamManipulationROIRef (index_type experimentIndex, index_type microbeamManipulationIndex, index_type ROIRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getPixelsAnnotationRef (index_type imageIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getPlaneAnnotationRef (index_type imageIndex, index_type planeIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getPlateAcquisitionAnnotationRef (index_type plateIndex, index_type plateAcquisitionIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getPlateAcquisitionWellSampleRef (index_type plateIndex, index_type plateAcquisitionIndex, index_type wellSampleRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getPlateAnnotationRef (index_type plateIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getProjectAnnotationRef (index_type projectIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getProjectDatasetRef (index_type projectIndex, index_type datasetRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getReagentAnnotationRef (index_type screenIndex, index_type reagentIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getROIAnnotationRef (index_type ROIIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getScreenAnnotationRef (index_type screenIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getScreenPlateRef (index_type screenIndex, index_type plateRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getTagAnnotationAnnotationRef (index_type tagAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getTermAnnotationAnnotationRef (index_type termAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getTimestampAnnotationAnnotationRef (index_type timestampAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getWellAnnotationRef (index_type plateIndex, index_type wellIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getWellSampleAnnotationRef (index_type plateIndex, index_type wellIndex, index_type wellSampleIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::meta::OMEXMLMetadata::getXMLAnnotationAnnotationRef (index_type XMLAnnotationIndex, index_type annotationRefIndex) const

: Need an exception for store inconsistency.

Member ome::xml::model::Annotation::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Annotation::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkChannel (const ome::compat::shared_ptr< ome::xml::model::Channel > &channel_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkExperimenter (const ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkPixels (const ome::compat::shared_ptr< ome::xml::model::Pixels > &pixels_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkPlane (const ome::compat::shared_ptr< ome::xml::model::Plane > &plane_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkPlate (const ome::compat::shared_ptr< ome::xml::model::Plate > &plate_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkPlateAcquisition (const ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkReagent (const ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkScreen (const ome::compat::shared_ptr< ome::xml::model::Screen > &screen_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkWell (const ome::compat::shared_ptr< ome::xml::model::Well > &well_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::linkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Annotation::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkChannel (const ome::compat::shared_ptr< ome::xml::model::Channel > &channel_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkExperimenter (const ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkPixels (const ome::compat::shared_ptr< ome::xml::model::Pixels > &pixels_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkPlane (const ome::compat::shared_ptr< ome::xml::model::Plane > &plane_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkPlate (const ome::compat::shared_ptr< ome::xml::model::Plate > &plate_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkPlateAcquisition (const ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkReagent (const ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkScreen (const ome::compat::shared_ptr< ome::xml::model::Screen > &screen_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkWell (const ome::compat::shared_ptr< ome::xml::model::Well > &well_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Annotation::unlinkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Channel::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Channel::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Channel::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Channel::unlinkFilterSet (ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Dataset::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Dataset::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Dataset::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Dataset::linkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Dataset::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Dataset::unlinkExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Dataset::unlinkExperimenterGroup (ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Dataset::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Dataset::unlinkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Dichroic::linkFilterSet (const ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Dichroic::linkLightPath (const ome::compat::shared_ptr< ome::xml::model::LightPath > &lightPath_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Dichroic::unlinkFilterSet (const ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Dichroic::unlinkLightPath (const ome::compat::shared_ptr< ome::xml::model::LightPath > &lightPath_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experiment::addMicrobeamManipulation (ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Experiment::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Experiment::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experiment::removeMicrobeamManipulation (ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experiment::unlinkExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Experiment::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experimenter::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Experimenter::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experimenter::linkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experimenter::linkExperiment (const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experimenter::linkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experimenter::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experimenter::linkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experimenter::linkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Experimenter::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experimenter::unlinkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experimenter::unlinkExperiment (const ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experimenter::unlinkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experimenter::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experimenter::unlinkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Experimenter::unlinkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ExperimenterGroup::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::ExperimenterGroup::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ExperimenterGroup::linkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ExperimenterGroup::linkExperimenter (const ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ExperimenterGroup::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ExperimenterGroup::linkLeader (const ome::compat::shared_ptr< ome::xml::model::Experimenter > &leader)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ExperimenterGroup::linkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ExperimenterGroup::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ExperimenterGroup::unlinkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ExperimenterGroup::unlinkExperimenter (const ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ExperimenterGroup::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ExperimenterGroup::unlinkLeader (const ome::compat::shared_ptr< ome::xml::model::Experimenter > &leader)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ExperimenterGroup::unlinkProject (const ome::compat::shared_ptr< ome::xml::model::Project > &project_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Filter::linkFilterSetEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Filter::linkFilterSetExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Filter::linkLightPathEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::LightPath > &lightPath_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Filter::linkLightPathExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::LightPath > &lightPath_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Filter::unlinkFilterSetEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Filter::unlinkFilterSetExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Filter::unlinkLightPathEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::LightPath > &lightPath_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Filter::unlinkLightPathExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::LightPath > &lightPath_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::FilterSet::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::FilterSet::linkChannel (const ome::compat::shared_ptr< ome::xml::model::Channel > &channel_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::FilterSet::linkEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &emissionFilter)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::FilterSet::linkExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &excitationFilter)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::FilterSet::unlinkChannel (const ome::compat::shared_ptr< ome::xml::model::Channel > &channel_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::FilterSet::unlinkDichroic (ome::compat::shared_ptr< ome::xml::model::Dichroic > &dichroic)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::FilterSet::unlinkEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &emissionFilter)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::FilterSet::unlinkExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &excitationFilter)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Image::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Image::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Image::linkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Image::linkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Image::linkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Image::linkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Image::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Image::unlinkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Image::unlinkExperiment (ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Image::unlinkExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Image::unlinkExperimenterGroup (ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Image::unlinkInstrument (ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Image::unlinkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Image::unlinkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Image::unlinkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Instrument::addDetector (ome::compat::shared_ptr< ome::xml::model::Detector > &detector)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Instrument::addDichroic (ome::compat::shared_ptr< ome::xml::model::Dichroic > &dichroic)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Instrument::addFilter (ome::compat::shared_ptr< ome::xml::model::Filter > &filter)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Instrument::addFilterSet (ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Instrument::addLightSource (ome::compat::shared_ptr< ome::xml::model::LightSource > &lightSource)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Instrument::addObjective (ome::compat::shared_ptr< ome::xml::model::Objective > &objective)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Instrument::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Instrument::removeDetector (ome::compat::shared_ptr< ome::xml::model::Detector > &detector)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Instrument::removeDichroic (ome::compat::shared_ptr< ome::xml::model::Dichroic > &dichroic)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Instrument::removeFilter (ome::compat::shared_ptr< ome::xml::model::Filter > &filter)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Instrument::removeFilterSet (ome::compat::shared_ptr< ome::xml::model::FilterSet > &filterSet)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Instrument::removeLightSource (ome::compat::shared_ptr< ome::xml::model::LightSource > &lightSource)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Instrument::removeObjective (ome::compat::shared_ptr< ome::xml::model::Objective > &objective)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Instrument::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Laser::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Laser::unlinkPump (ome::compat::shared_ptr< ome::xml::model::LightSource > &pump)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Leader::linkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Leader::unlinkExperimenterGroup (const ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::LightPath::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::LightPath::linkEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &emissionFilter)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::LightPath::linkExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &excitationFilter)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::LightPath::unlinkDichroic (ome::compat::shared_ptr< ome::xml::model::Dichroic > &dichroic)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::LightPath::unlinkEmissionFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &emissionFilter)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::LightPath::unlinkExcitationFilter (const ome::compat::shared_ptr< ome::xml::model::Filter > &excitationFilter)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Mask::addBinData (ome::compat::shared_ptr< ome::xml::model::BinData > &binData)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Mask::removeBinData (ome::compat::shared_ptr< ome::xml::model::BinData > &binData)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::MicrobeamManipulation::addLightSourceSettings (ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > &lightSourceSettings)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::MicrobeamManipulation::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::MicrobeamManipulation::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::MicrobeamManipulation::linkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::MicrobeamManipulation::removeLightSourceSettings (ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > &lightSourceSettings)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::MicrobeamManipulation::unlinkExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::MicrobeamManipulation::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::MicrobeamManipulation::unlinkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::addDataset (ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addExperiment (ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addExperimenterGroup (ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addImage (ome::compat::shared_ptr< ome::xml::model::Image > &image)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addInstrument (ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addPlate (ome::compat::shared_ptr< ome::xml::model::Plate > &plate)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addProject (ome::compat::shared_ptr< ome::xml::model::Project > &project)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addROI (ome::compat::shared_ptr< ome::xml::model::ROI > &roi)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::addScreen (ome::compat::shared_ptr< ome::xml::model::Screen > &screen)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::OME::removeDataset (ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeExperiment (ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeExperimenterGroup (ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeImage (ome::compat::shared_ptr< ome::xml::model::Image > &image)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeInstrument (ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removePlate (ome::compat::shared_ptr< ome::xml::model::Plate > &plate)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeProject (ome::compat::shared_ptr< ome::xml::model::Project > &project)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeROI (ome::compat::shared_ptr< ome::xml::model::ROI > &roi)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OME::removeScreen (ome::compat::shared_ptr< ome::xml::model::Screen > &screen)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::OMEModel::addModelObject (const std::string &id, ome::compat::shared_ptr< OMEModelObject > &object)=0

What is the point of returning the object? The object is returned under all conditions, even when adding the object failed (e.g. if the object was a Reference). Should it be possible to insert null objects?

Member ome::xml::model::OMEModel::addReference (ome::compat::shared_ptr< OMEModelObject > &a, ome::compat::shared_ptr< Reference > &b)=0

There is no validation of whether the model object was valid for this model (as for the java implementation). The return type is an artifact of the java map implementation. Consider removing the return type and throwing if the model object is not already present in the object map; or adding the object to the object map implicitly and not throwing.

Member ome::xml::model::OMEModel::getModelObject (const std::string &id) const =0

: Would a const reference be better for the return?

Member ome::xml::model::OMEModel::resolveReferences ()=0

This method is a bit of a wart in the design. The model should not allow invalid references or insertion of null model objects to begin with.

Class ome::xml::model::OMEModelObject

Check constness and reference type for params/return types.

Consider dropping redundant parts of typenames which are duplicated in the namespace. For example, OMEModelObject could just be Object, since it's really an ome::xml::model::Object.

Member ome::xml::model::OMEModelObject::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< OMEModelObject > &object)=0

the use of reference to provide type information for the type of object is unconventional and quite possibly unnecessary–a simple string or type_info would suffice for what it's being used for, if it's needed at all. Is this true for all cases? The implementation also needs to do strict checking of the object type; it's not currently failing if it's of the wrong type. This applies to all generated model objects implementing this interface.

Member ome::xml::model::Pixels::addBinData (ome::compat::shared_ptr< ome::xml::model::BinData > &binData)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Pixels::addChannel (ome::compat::shared_ptr< ome::xml::model::Channel > &channel)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Pixels::addPlane (ome::compat::shared_ptr< ome::xml::model::Plane > &plane)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Pixels::addTiffData (ome::compat::shared_ptr< ome::xml::model::TiffData > &tiffData)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Pixels::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Pixels::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Pixels::removeBinData (ome::compat::shared_ptr< ome::xml::model::BinData > &binData)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Pixels::removeChannel (ome::compat::shared_ptr< ome::xml::model::Channel > &channel)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Pixels::removePlane (ome::compat::shared_ptr< ome::xml::model::Plane > &plane)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Pixels::removeTiffData (ome::compat::shared_ptr< ome::xml::model::TiffData > &tiffData)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Pixels::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Plane::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Plane::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Plane::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Plate::addPlateAcquisition (ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Plate::addWell (ome::compat::shared_ptr< ome::xml::model::Well > &well)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Plate::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Plate::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Plate::linkScreen (const ome::compat::shared_ptr< ome::xml::model::Screen > &screen_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Plate::removePlateAcquisition (ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Plate::removeWell (ome::compat::shared_ptr< ome::xml::model::Well > &well)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Plate::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Plate::unlinkScreen (const ome::compat::shared_ptr< ome::xml::model::Screen > &screen_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::PlateAcquisition::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::PlateAcquisition::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::PlateAcquisition::linkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::PlateAcquisition::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::PlateAcquisition::unlinkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Class ome::xml::model::primitives::Color

: The use of a signed integer is not a good design. Look at correcting the model to use an unsigned type.

Member ome::xml::model::Project::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Project::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Project::linkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Project::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Project::unlinkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Project::unlinkExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Project::unlinkExperimenterGroup (ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::Pump::linkLaser (const ome::compat::shared_ptr< ome::xml::model::Laser > &laser_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Pump::unlinkLaser (const ome::compat::shared_ptr< ome::xml::model::Laser > &laser_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Reagent::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Reagent::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Reagent::linkWell (const ome::compat::shared_ptr< ome::xml::model::Well > &well_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Reagent::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Reagent::unlinkWell (const ome::compat::shared_ptr< ome::xml::model::Well > &well_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ROI::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::ROI::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ROI::linkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ROI::linkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::ROI::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ROI::unlinkImage (const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::ROI::unlinkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Screen::addReagent (ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Screen::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Screen::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Screen::linkPlate (const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Screen::removeReagent (ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Screen::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Screen::unlinkPlate (const ome::compat::shared_ptr< ome::xml::model::Plate > &plate)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::addBooleanAnnotation (ome::compat::shared_ptr< ome::xml::model::BooleanAnnotation > &booleanAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addCommentAnnotation (ome::compat::shared_ptr< ome::xml::model::CommentAnnotation > &commentAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addDoubleAnnotation (ome::compat::shared_ptr< ome::xml::model::DoubleAnnotation > &doubleAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addFileAnnotation (ome::compat::shared_ptr< ome::xml::model::FileAnnotation > &fileAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addListAnnotation (ome::compat::shared_ptr< ome::xml::model::ListAnnotation > &listAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addLongAnnotation (ome::compat::shared_ptr< ome::xml::model::LongAnnotation > &longAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addTagAnnotation (ome::compat::shared_ptr< ome::xml::model::TagAnnotation > &tagAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addTermAnnotation (ome::compat::shared_ptr< ome::xml::model::TermAnnotation > &termAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addTimestampAnnotation (ome::compat::shared_ptr< ome::xml::model::TimestampAnnotation > &timestampAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::addXMLAnnotation (ome::compat::shared_ptr< ome::xml::model::XMLAnnotation > &xmlAnnotation)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::StructuredAnnotations::removeBooleanAnnotation (ome::compat::shared_ptr< ome::xml::model::BooleanAnnotation > &booleanAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeCommentAnnotation (ome::compat::shared_ptr< ome::xml::model::CommentAnnotation > &commentAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeDoubleAnnotation (ome::compat::shared_ptr< ome::xml::model::DoubleAnnotation > &doubleAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeFileAnnotation (ome::compat::shared_ptr< ome::xml::model::FileAnnotation > &fileAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeListAnnotation (ome::compat::shared_ptr< ome::xml::model::ListAnnotation > &listAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeLongAnnotation (ome::compat::shared_ptr< ome::xml::model::LongAnnotation > &longAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeTagAnnotation (ome::compat::shared_ptr< ome::xml::model::TagAnnotation > &tagAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeTermAnnotation (ome::compat::shared_ptr< ome::xml::model::TermAnnotation > &termAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeTimestampAnnotation (ome::compat::shared_ptr< ome::xml::model::TimestampAnnotation > &timestampAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::StructuredAnnotations::removeXMLAnnotation (ome::compat::shared_ptr< ome::xml::model::XMLAnnotation > &xmlAnnotation)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Union::addShape (ome::compat::shared_ptr< ome::xml::model::Shape > &shape)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Union::removeShape (ome::compat::shared_ptr< ome::xml::model::Shape > &shape)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Well::addWellSample (ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)

Return list position?

Detect and handle duplicates?

Member ome::xml::model::Well::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::Well::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::Well::removeWellSample (ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample)

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Well::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::Well::unlinkReagent (ome::compat::shared_ptr< ome::xml::model::Reagent > &reagent)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::WellSample::link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)

This bit is silly; why do we have two dynamic_casts here.

This bit is silly; why do we have two dynamic_casts here.

Member ome::xml::model::WellSample::linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::WellSample::linkPlateAcquisition (const ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition_BackReference)

Why have a return value here; what is it used for? Is this an artifact of the Java API?

Member ome::xml::model::WellSample::unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::WellSample::unlinkImage (ome::compat::shared_ptr< ome::xml::model::Image > &image)

This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

Member ome::xml::model::WellSample::unlinkPlateAcquisition (const ome::compat::shared_ptr< ome::xml::model::PlateAcquisition > &plateAcquisition_BackReference)

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

Member ome::xml::model::XMLAnnotation::asXMLElementInternal (common::xml::dom::Document &document, common::xml::dom::Element &element) const

Catch and/or rethrow actual xerces exceptions