#include <ome/xml/model/Plane.h>

Inheritance diagram for ome::xml::model::Plane:

Collaboration diagram for ome::xml::model::Plane:

Public Member Functions
	Plane ()
	Default constructor.

	Plane (const Plane &copy)
	Copy constructor. More...

virtual	~Plane ()
	Destructor.

const std::string &	elementName () const
	Get the element name of this model object. More...

bool	validElementName (const std::string &name) const
	Check if a given element name is valid for processing by this model object. More...

virtual void	update (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

ome::compat::shared_ptr< double >	getExposureTime ()
	Get the ExposureTime property. More...

const ome::compat::shared_ptr< double >	getExposureTime () const
	Get the ExposureTime property. More...

void	setExposureTime (ome::compat::shared_ptr< double > &exposureTime)
	Set the ExposureTime property. More...

ome::compat::shared_ptr< double >	getPositionZ ()
	Get the PositionZ property. More...

const ome::compat::shared_ptr< double >	getPositionZ () const
	Get the PositionZ property. More...

void	setPositionZ (ome::compat::shared_ptr< double > &positionZ)
	Set the PositionZ property. More...

ome::compat::shared_ptr< double >	getPositionX ()
	Get the PositionX property. More...

const ome::compat::shared_ptr< double >	getPositionX () const
	Get the PositionX property. More...

void	setPositionX (ome::compat::shared_ptr< double > &positionX)
	Set the PositionX property. More...

ome::compat::shared_ptr< double >	getPositionY ()
	Get the PositionY property. More...

const ome::compat::shared_ptr< double >	getPositionY () const
	Get the PositionY property. More...

void	setPositionY (ome::compat::shared_ptr< double > &positionY)
	Set the PositionY property. More...

ome::compat::shared_ptr< double >	getDeltaT ()
	Get the DeltaT property. More...

const ome::compat::shared_ptr< double >	getDeltaT () const
	Get the DeltaT property. More...

void	setDeltaT (ome::compat::shared_ptr< double > &deltaT)
	Set the DeltaT property. More...

const ome::xml::model::primitives::NonNegativeInteger &	getTheC () const
	Get the TheC property. More...

void	setTheC (const ome::xml::model::primitives::NonNegativeInteger &theC)
	Set the TheC property. More...

const ome::xml::model::primitives::NonNegativeInteger &	getTheZ () const
	Get the TheZ property. More...

void	setTheZ (const ome::xml::model::primitives::NonNegativeInteger &theZ)
	Set the TheZ property. More...

const ome::xml::model::primitives::NonNegativeInteger &	getTheT () const
	Get the TheT property. More...

void	setTheT (const ome::xml::model::primitives::NonNegativeInteger &theT)
	Set the TheT property. More...

ome::compat::shared_ptr< std::string >	getHashSHA1 ()
	Get the HashSHA1 property. More...

const ome::compat::shared_ptr< std::string >	getHashSHA1 () const
	Get the HashSHA1 property. More...

void	setHashSHA1 (ome::compat::shared_ptr< std::string > &hashSHA1)
	Set the HashSHA1 property. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedAnnotationList () const
	Get size of linked Annotation list. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type	getLinkedAnnotationList () const
	Get the linked Annotation list. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	getLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Annotation. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	setLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Set linked Annotation. More...

bool	linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Link Annotation. More...

bool	unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Unlink Annotation. More...

ome::compat::weak_ptr< ome::xml::model::Pixels >	getPixels ()
	Get the Pixels property. More...

const ome::compat::weak_ptr< ome::xml::model::Pixels >	getPixels () const
	Get the Pixels property. More...

void	setPixels (ome::compat::weak_ptr< ome::xml::model::Pixels > &pixels_BackReference)
	Set the Pixels property. More...

virtual common::xml::dom::Element	asXMLElement (common::xml::dom::Document &document) const
	Transform the object hierarchy rooted at this element to XML. More...

const std::string &	getXMLNamespace () const
	Get the XML namespace for this model object. More...

Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
virtual	~OMEModelObject ()
	Destructor.

virtual void	update (const common::xml::dom::Element &element,::ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ::ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

Public Member Functions inherited from ome::xml::model::OMEModelObject
virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< OMEModelObject > &object)=0
	Link a given OME model object to this model object. More...

Static Public Member Functions
static ome::compat::shared_ptr< Plane >	create (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Create a Plane model object from DOM element. More...

Static Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
static std::vector< common::xml::dom::Element >	getChildrenByTagName (const common::xml::dom::Element &parent, const std::string &name)
	Retrieve all the children of an element that have a given tag name. More...

static std::string	stripNamespacePrefix (const std::string &value)
	Strip the namespace prefix from a tag name. More...

Protected Member Functions
virtual common::xml::dom::Element	asXMLElementInternal (common::xml::dom::Document &document, common::xml::dom::Element &element) const
	Transform the object hierarchy rooted at this element to XML. More...

Protected Member Functions inherited from ome::xml::model::detail::OMEModelObject
	OMEModelObject (const std::string &objectType="OMEModelObject")
	Constructor.

	OMEModelObject (const OMEModelObject &copy)
	Copy constructor. More...

template<class C , typename T >
bool	contains (const C &container, const ome::compat::shared_ptr< T > &element)
	Check if a container contains a particular element. More...

Protected Member Functions inherited from ome::xml::model::OMEModelObject
	OMEModelObject ()
	Constructor.

Private Attributes
ome::compat::shared_ptr< double >	exposureTime
	ExposureTime property.

ome::compat::shared_ptr< double >	positionZ
	PositionZ property.

ome::compat::shared_ptr< double >	positionX
	PositionX property.

ome::compat::shared_ptr< double >	positionY
	PositionY property.

ome::compat::shared_ptr< double >	deltaT
	DeltaT property.

ome::xml::model::primitives::NonNegativeInteger	theC
	TheC property.

ome::xml::model::primitives::NonNegativeInteger	theZ
	TheZ property.

ome::xml::model::primitives::NonNegativeInteger	theT
	TheT property.

ome::compat::shared_ptr< std::string >	hashSHA1
	HashSHA1 property.

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type	annotationLinks
	AnnotationRef reference (occurs more than once)

ome::compat::weak_ptr< ome::xml::model::Pixels >	pixels
	Pixels_BackReference back reference.

Additional Inherited Members
Protected Attributes inherited from ome::xml::model::detail::OMEModelObject
ome::common::Logger	logger
	Message logger.

Detailed Description

Plane model object.

Constructor & Destructor Documentation

ome::xml::model::Plane::Plane ( const Plane & copy )

Copy constructor.

Parameters

copy	the Plane to copy.

Member Function Documentation

common::xml::dom::Element ome::xml::model::Plane::asXMLElement ( common::xml::dom::Document & document ) const

virtual

Transform the object hierarchy rooted at this element to XML.

Parameters

document document for element creation

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::OMEModelObject.

References asXMLElementInternal(), and ome::common::xml::dom::Document::createElementNS().

common::xml::dom::Element ome::xml::model::Plane::asXMLElementInternal	(	common::xml::dom::Document &	document,
		common::xml::dom::Element &	element
	)		const

protectedvirtual

Transform the object hierarchy rooted at this element to XML.

This internal implementation of asXMLelement also requires an XML element, which must not be null, or may be instantiated and passed from superclasses.

Parameters

document	XML document for element creation.
element	XML element for setting model data.

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::detail::OMEModelObject.

References annotationLinks, ome::common::xml::dom::Node::appendChild(), ome::xml::model::detail::OMEModelObject::asXMLElementInternal(), ome::common::xml::dom::Document::createElementNS(), deltaT, exposureTime, hashSHA1, positionX, positionY, positionZ, ome::common::xml::dom::Element::setAttribute(), theC, theT, and theZ.

Referenced by asXMLElement().

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ome::compat::shared_ptr< Plane > ome::xml::model::Plane::create	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

static

Create a Plane model object from DOM element.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Returns: a new model object.

Referenced by ome::xml::model::Pixels::update().

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const std::string & ome::xml::model::Plane::elementName ( ) const

virtual

Get the element name of this model object.

This will be the most-derived class name.

Returns: the element type.

Implements ome::xml::model::OMEModelObject.

ome::compat::shared_ptr< double > ome::xml::model::Plane::getDeltaT ( )

Get the DeltaT property.

Returns: the DeltaT property.

References deltaT.

const ome::compat::shared_ptr< double > ome::xml::model::Plane::getDeltaT ( ) const

Get the DeltaT property.

Returns: the DeltaT property.

References deltaT.

ome::compat::shared_ptr< double > ome::xml::model::Plane::getExposureTime ( )

Get the ExposureTime property.

Returns: the ExposureTime property.

References exposureTime.

const ome::compat::shared_ptr< double > ome::xml::model::Plane::getExposureTime ( ) const

Get the ExposureTime property.

Returns: the ExposureTime property.

References exposureTime.

ome::compat::shared_ptr< std::string > ome::xml::model::Plane::getHashSHA1 ( )

Get the HashSHA1 property.

Returns: the HashSHA1 property.

References hashSHA1.

const ome::compat::shared_ptr< std::string > ome::xml::model::Plane::getHashSHA1 ( ) const

Get the HashSHA1 property.

Returns: the HashSHA1 property.

References hashSHA1.

const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Plane::getLinkedAnnotation ( OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Annotation.

Parameters

index the index number of the Annotation.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References annotationLinks.

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type ome::xml::model::Plane::getLinkedAnnotationList ( ) const

Get the linked Annotation list.

Returns: a reference to the list.

References annotationLinks.

ome::compat::weak_ptr< ome::xml::model::Pixels > ome::xml::model::Plane::getPixels ( )

Get the Pixels property.

Returns: the Pixels property.

References pixels.

const ome::compat::weak_ptr< ome::xml::model::Pixels > ome::xml::model::Plane::getPixels ( ) const

Get the Pixels property.

Returns: the Pixels property.

References pixels.

ome::compat::shared_ptr< double > ome::xml::model::Plane::getPositionX ( )

Get the PositionX property.

Returns: the PositionX property.

References positionX.

const ome::compat::shared_ptr< double > ome::xml::model::Plane::getPositionX ( ) const

Get the PositionX property.

Returns: the PositionX property.

References positionX.

ome::compat::shared_ptr< double > ome::xml::model::Plane::getPositionY ( )

Get the PositionY property.

Returns: the PositionY property.

References positionY.

const ome::compat::shared_ptr< double > ome::xml::model::Plane::getPositionY ( ) const

Get the PositionY property.

Returns: the PositionY property.

References positionY.

ome::compat::shared_ptr< double > ome::xml::model::Plane::getPositionZ ( )

Get the PositionZ property.

Returns: the PositionZ property.

References positionZ.

const ome::compat::shared_ptr< double > ome::xml::model::Plane::getPositionZ ( ) const

Get the PositionZ property.

Returns: the PositionZ property.

References positionZ.

const ome::xml::model::primitives::NonNegativeInteger & ome::xml::model::Plane::getTheC ( ) const

Get the TheC property.

Returns: the TheC property.

References theC.

const ome::xml::model::primitives::NonNegativeInteger & ome::xml::model::Plane::getTheT ( ) const

Get the TheT property.

Returns: the TheT property.

References theT.

const ome::xml::model::primitives::NonNegativeInteger & ome::xml::model::Plane::getTheZ ( ) const

Get the TheZ property.

Returns: the TheZ property.

References theZ.

const std::string & ome::xml::model::Plane::getXMLNamespace ( ) const

virtual

Get the XML namespace for this model object.

Returns: the XML namespace.

Implements ome::xml::model::OMEModelObject.

bool ome::xml::model::Plane::link	(	ome::compat::shared_ptr< Reference > &	reference,
		ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &	object
	)

Link a given OME model object to this model object.

Parameters

reference	type qualifier for the reference. This should be the corresponding reference type for object. If, for example, object is of type Image, reference must be of type ImageRef.
object	Model object to link to.

Returns: true if this model object was able to handle the reference, otherwise false.

Todo:: the use of reference to provide type information for the type of object is unconventional and quite possibly unnecessary–a simple string or type_info would suffice for what it's being used for, if it's needed at all. Is this true for all cases? The implementation also needs to do strict checking of the object type; it's not currently failing if it's of the wrong type. This applies to all generated model objects implementing this interface.

Todo:: This bit is silly; why do we have two dynamic_casts here.

References annotationLinks, ome::xml::model::detail::OMEModelObject::link(), ome::xml::model::Annotation::linkPlane(), and ome::xml::model::detail::OMEModelObject::logger.

bool ome::xml::model::Plane::linkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Link Annotation.

Parameters

annotation the Annotation to link.

Returns: true if the object was added to the internal annotationLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References annotationLinks.

void ome::xml::model::Plane::setDeltaT ( ome::compat::shared_ptr< double > & deltaT )

Set the DeltaT property.

Parameters

deltaT the value to set.

References deltaT.

Referenced by update().

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void ome::xml::model::Plane::setExposureTime ( ome::compat::shared_ptr< double > & exposureTime )

Set the ExposureTime property.

Parameters

exposureTime the value to set.

References exposureTime.

Referenced by update().

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void ome::xml::model::Plane::setHashSHA1 ( ome::compat::shared_ptr< std::string > & hashSHA1 )

Set the HashSHA1 property.

Parameters

hashSHA1 the value to set.

References hashSHA1.

Referenced by update().

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const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Plane::setLinkedAnnotation	(	OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Annotation > &	annotation
	)

Set linked Annotation.

Note: The index must be valid.

Parameters

index	the index number of the Annotation.
annotation	the Annotation to set.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References annotationLinks.

void ome::xml::model::Plane::setPixels ( ome::compat::weak_ptr< ome::xml::model::Pixels > & pixels_BackReference )

Set the Pixels property.

Parameters

pixels_BackReference the value to set.

References pixels.

void ome::xml::model::Plane::setPositionX ( ome::compat::shared_ptr< double > & positionX )

Set the PositionX property.

Parameters

positionX the value to set.

References positionX.

Referenced by update().

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void ome::xml::model::Plane::setPositionY ( ome::compat::shared_ptr< double > & positionY )

Set the PositionY property.

Parameters

positionY the value to set.

References positionY.

Referenced by update().

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void ome::xml::model::Plane::setPositionZ ( ome::compat::shared_ptr< double > & positionZ )

Set the PositionZ property.

Parameters

positionZ the value to set.

References positionZ.

Referenced by update().

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void ome::xml::model::Plane::setTheC ( const ome::xml::model::primitives::NonNegativeInteger & theC )

Set the TheC property.

Parameters

theC	the value to set.

References theC.

Referenced by update().

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void ome::xml::model::Plane::setTheT ( const ome::xml::model::primitives::NonNegativeInteger & theT )

Set the TheT property.

Parameters

theT	the value to set.

References theT.

Referenced by update().

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void ome::xml::model::Plane::setTheZ ( const ome::xml::model::primitives::NonNegativeInteger & theZ )

Set the TheZ property.

Parameters

theZ	the value to set.

References theZ.

Referenced by update().

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OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type ome::xml::model::Plane::sizeOfLinkedAnnotationList ( ) const

Get size of linked Annotation list.

Returns: the size of the list.

References annotationLinks.

bool ome::xml::model::Plane::unlinkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Unlink Annotation.

Parameters

annotation the Annotation to unlink.

Returns: true if the Annotation was unlinked, otherwise false if the Annotation was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References annotationLinks.

void ome::xml::model::Plane::update	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

virtual

Update the object hierarchy recursively from an XML DOM tree.

Note: No properties are removed, only added or updated.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Implements ome::xml::model::OMEModelObject.

References ome::xml::model::OMEModel::addReference(), ome::common::xml::dom::Element::getAttribute(), ome::xml::model::detail::OMEModelObject::getChildrenByTagName(), ome::common::xml::dom::Element::getTagName(), ome::common::xml::dom::Element::hasAttribute(), ome::xml::model::detail::OMEModelObject::logger, setDeltaT(), setExposureTime(), setHashSHA1(), setPositionX(), setPositionY(), setPositionZ(), setTheC(), setTheT(), setTheZ(), ome::xml::model::detail::OMEModelObject::stripNamespacePrefix(), ome::xml::model::detail::OMEModelObject::update(), and validElementName().