#include <ome/xml/model/Pixels.h>

Inheritance diagram for ome::xml::model::Pixels:

Collaboration diagram for ome::xml::model::Pixels:

Public Member Functions
	Pixels ()
	Default constructor.

	Pixels (const Pixels &copy)
	Copy constructor. More...

virtual	~Pixels ()
	Destructor.

const std::string &	elementName () const
	Get the element name of this model object. More...

bool	validElementName (const std::string &name) const
	Check if a given element name is valid for processing by this model object. More...

virtual void	update (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

const ome::xml::model::primitives::PositiveInteger &	getSizeT () const
	Get the SizeT property. More...

void	setSizeT (const ome::xml::model::primitives::PositiveInteger &sizeT)
	Set the SizeT property. More...

ome::xml::model::enums::DimensionOrder &	getDimensionOrder ()
	Get the DimensionOrder property. More...

const ome::xml::model::enums::DimensionOrder &	getDimensionOrder () const
	Get the DimensionOrder property. More...

void	setDimensionOrder (const ome::xml::model::enums::DimensionOrder &dimensionOrder)
	Set the DimensionOrder property. More...

ome::compat::shared_ptr< double >	getTimeIncrement ()
	Get the TimeIncrement property. More...

const ome::compat::shared_ptr< double >	getTimeIncrement () const
	Get the TimeIncrement property. More...

void	setTimeIncrement (ome::compat::shared_ptr< double > &timeIncrement)
	Set the TimeIncrement property. More...

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	getPhysicalSizeY ()
	Get the PhysicalSizeY property. More...

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	getPhysicalSizeY () const
	Get the PhysicalSizeY property. More...

void	setPhysicalSizeY (ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > &physicalSizeY)
	Set the PhysicalSizeY property. More...

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	getPhysicalSizeX ()
	Get the PhysicalSizeX property. More...

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	getPhysicalSizeX () const
	Get the PhysicalSizeX property. More...

void	setPhysicalSizeX (ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > &physicalSizeX)
	Set the PhysicalSizeX property. More...

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	getPhysicalSizeZ ()
	Get the PhysicalSizeZ property. More...

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	getPhysicalSizeZ () const
	Get the PhysicalSizeZ property. More...

void	setPhysicalSizeZ (ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > &physicalSizeZ)
	Set the PhysicalSizeZ property. More...

const ome::xml::model::primitives::PositiveInteger &	getSizeX () const
	Get the SizeX property. More...

void	setSizeX (const ome::xml::model::primitives::PositiveInteger &sizeX)
	Set the SizeX property. More...

const ome::xml::model::primitives::PositiveInteger &	getSizeY () const
	Get the SizeY property. More...

void	setSizeY (const ome::xml::model::primitives::PositiveInteger &sizeY)
	Set the SizeY property. More...

const ome::xml::model::primitives::PositiveInteger &	getSizeZ () const
	Get the SizeZ property. More...

void	setSizeZ (const ome::xml::model::primitives::PositiveInteger &sizeZ)
	Set the SizeZ property. More...

ome::compat::shared_ptr< bool >	getBigEndian ()
	Get the BigEndian property. More...

const ome::compat::shared_ptr< bool >	getBigEndian () const
	Get the BigEndian property. More...

void	setBigEndian (ome::compat::shared_ptr< bool > &bigEndian)
	Set the BigEndian property. More...

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveInteger >	getSignificantBits ()
	Get the SignificantBits property. More...

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveInteger >	getSignificantBits () const
	Get the SignificantBits property. More...

void	setSignificantBits (ome::compat::shared_ptr< ome::xml::model::primitives::PositiveInteger > &significantBits)
	Set the SignificantBits property. More...

const ome::xml::model::primitives::PositiveInteger &	getSizeC () const
	Get the SizeC property. More...

void	setSizeC (const ome::xml::model::primitives::PositiveInteger &sizeC)
	Set the SizeC property. More...

ome::xml::model::enums::PixelType &	getType ()
	Get the Type property. More...

const ome::xml::model::enums::PixelType &	getType () const
	Get the Type property. More...

void	setType (const ome::xml::model::enums::PixelType &type)
	Set the Type property. More...

const std::string &	getID () const
	Get the ID property. More...

void	setID (const std::string &id)
	Set the ID property. More...

ome::compat::shared_ptr< bool >	getInterleaved ()
	Get the Interleaved property. More...

const ome::compat::shared_ptr< bool >	getInterleaved () const
	Get the Interleaved property. More...

void	setInterleaved (ome::compat::shared_ptr< bool > &interleaved)
	Set the Interleaved property. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type	sizeOfChannelList () const
	Get size of linked Channel list. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > > &	getChannelList ()
	Get the Channel list. More...

const std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > > &	getChannelList () const
	Get the Channel list. More...

ome::compat::shared_ptr< ome::xml::model::Channel > &	getChannel (std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type index)
	Get Channel. More...

const ome::compat::shared_ptr< ome::xml::model::Channel > &	getChannel (std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type index) const
	Get Channel. More...

void	setChannel (std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Channel > &channel)
	Set Channel. More...

void	addChannel (ome::compat::shared_ptr< ome::xml::model::Channel > &channel)
	Add Channel. More...

void	removeChannel (ome::compat::shared_ptr< ome::xml::model::Channel > &channel)
	Remove Channel. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type	sizeOfBinDataList () const
	Get size of linked BinData list. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > > &	getBinDataList ()
	Get the BinData list. More...

const std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > > &	getBinDataList () const
	Get the BinData list. More...

ome::compat::shared_ptr< ome::xml::model::BinData > &	getBinData (std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type index)
	Get BinData. More...

const ome::compat::shared_ptr< ome::xml::model::BinData > &	getBinData (std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type index) const
	Get BinData. More...

void	setBinData (std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type index, ome::compat::shared_ptr< ome::xml::model::BinData > &binData)
	Set BinData. More...

void	addBinData (ome::compat::shared_ptr< ome::xml::model::BinData > &binData)
	Add BinData. More...

void	removeBinData (ome::compat::shared_ptr< ome::xml::model::BinData > &binData)
	Remove BinData. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type	sizeOfTiffDataList () const
	Get size of linked TiffData list. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > > &	getTiffDataList ()
	Get the TiffData list. More...

const std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > > &	getTiffDataList () const
	Get the TiffData list. More...

ome::compat::shared_ptr< ome::xml::model::TiffData > &	getTiffData (std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type index)
	Get TiffData. More...

const ome::compat::shared_ptr< ome::xml::model::TiffData > &	getTiffData (std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type index) const
	Get TiffData. More...

void	setTiffData (std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type index, ome::compat::shared_ptr< ome::xml::model::TiffData > &tiffData)
	Set TiffData. More...

void	addTiffData (ome::compat::shared_ptr< ome::xml::model::TiffData > &tiffData)
	Add TiffData. More...

void	removeTiffData (ome::compat::shared_ptr< ome::xml::model::TiffData > &tiffData)
	Remove TiffData. More...

ome::compat::shared_ptr< ome::xml::model::MetadataOnly >	getMetadataOnly ()
	Get the MetadataOnly property. More...

const ome::compat::shared_ptr< ome::xml::model::MetadataOnly >	getMetadataOnly () const
	Get the MetadataOnly property. More...

void	setMetadataOnly (ome::compat::shared_ptr< ome::xml::model::MetadataOnly > &metadataOnly)
	Set the MetadataOnly property. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type	sizeOfPlaneList () const
	Get size of linked Plane list. More...

std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > > &	getPlaneList ()
	Get the Plane list. More...

const std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > > &	getPlaneList () const
	Get the Plane list. More...

ome::compat::shared_ptr< ome::xml::model::Plane > &	getPlane (std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type index)
	Get Plane. More...

const ome::compat::shared_ptr< ome::xml::model::Plane > &	getPlane (std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type index) const
	Get Plane. More...

void	setPlane (std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type index, ome::compat::shared_ptr< ome::xml::model::Plane > &plane)
	Set Plane. More...

void	addPlane (ome::compat::shared_ptr< ome::xml::model::Plane > &plane)
	Add Plane. More...

void	removePlane (ome::compat::shared_ptr< ome::xml::model::Plane > &plane)
	Remove Plane. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedAnnotationList () const
	Get size of linked Annotation list. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type	getLinkedAnnotationList () const
	Get the linked Annotation list. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	getLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Annotation. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	setLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Set linked Annotation. More...

bool	linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Link Annotation. More...

bool	unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Unlink Annotation. More...

virtual common::xml::dom::Element	asXMLElement (common::xml::dom::Document &document) const
	Transform the object hierarchy rooted at this element to XML. More...

const std::string &	getXMLNamespace () const
	Get the XML namespace for this model object. More...

Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
virtual	~OMEModelObject ()
	Destructor.

virtual void	update (const common::xml::dom::Element &element,::ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ::ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

Public Member Functions inherited from ome::xml::model::OMEModelObject
virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< OMEModelObject > &object)=0
	Link a given OME model object to this model object. More...

Static Public Member Functions
static ome::compat::shared_ptr< Pixels >	create (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Create a Pixels model object from DOM element. More...

Static Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
static std::vector< common::xml::dom::Element >	getChildrenByTagName (const common::xml::dom::Element &parent, const std::string &name)
	Retrieve all the children of an element that have a given tag name. More...

static std::string	stripNamespacePrefix (const std::string &value)
	Strip the namespace prefix from a tag name. More...

Protected Member Functions
virtual common::xml::dom::Element	asXMLElementInternal (common::xml::dom::Document &document, common::xml::dom::Element &element) const
	Transform the object hierarchy rooted at this element to XML. More...

Protected Member Functions inherited from ome::xml::model::detail::OMEModelObject
	OMEModelObject (const std::string &objectType="OMEModelObject")
	Constructor.

	OMEModelObject (const OMEModelObject &copy)
	Copy constructor. More...

template<class C , typename T >
bool	contains (const C &container, const ome::compat::shared_ptr< T > &element)
	Check if a container contains a particular element. More...

Protected Member Functions inherited from ome::xml::model::OMEModelObject
	OMEModelObject ()
	Constructor.

Private Attributes
ome::xml::model::primitives::PositiveInteger	sizeT
	SizeT property.

ome::xml::model::enums::DimensionOrder	dimensionOrder
	DimensionOrder property.

ome::compat::shared_ptr< double >	timeIncrement
	TimeIncrement property.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	physicalSizeY
	PhysicalSizeY property.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	physicalSizeX
	PhysicalSizeX property.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat >	physicalSizeZ
	PhysicalSizeZ property.

ome::xml::model::primitives::PositiveInteger	sizeX
	SizeX property.

ome::xml::model::primitives::PositiveInteger	sizeY
	SizeY property.

ome::xml::model::primitives::PositiveInteger	sizeZ
	SizeZ property.

ome::compat::shared_ptr< bool >	bigEndian
	BigEndian property.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveInteger >	significantBits
	SignificantBits property.

ome::xml::model::primitives::PositiveInteger	sizeC
	SizeC property.

ome::xml::model::enums::PixelType	type
	Type property.

std::string	id
	ID property.

ome::compat::shared_ptr< bool >	interleaved
	Interleaved property.

std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >	channels
	Channel property (occurs more than once)

std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >	binDataBlocks
	BinData property (occurs more than once)

std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >	tiffDataBlocks
	TiffData property (occurs more than once)

ome::compat::shared_ptr< ome::xml::model::MetadataOnly >	metadataOnly
	MetadataOnly property.

std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >	planes
	Plane property (occurs more than once)

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type	annotationLinks
	AnnotationRef reference (occurs more than once)

Additional Inherited Members
Protected Attributes inherited from ome::xml::model::detail::OMEModelObject
ome::common::Logger	logger
	Message logger.

Detailed Description

Pixels model object.

Constructor & Destructor Documentation

ome::xml::model::Pixels::Pixels ( const Pixels & copy )

Copy constructor.

Parameters

copy	the Pixels to copy.

Member Function Documentation

void ome::xml::model::Pixels::addBinData ( ome::compat::shared_ptr< ome::xml::model::BinData > & binData )

Add BinData.

Parameters

binData the BinData to add.

Todo:

Return list position?

Detect and handle duplicates?

References binDataBlocks.

Referenced by update().

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void ome::xml::model::Pixels::addChannel ( ome::compat::shared_ptr< ome::xml::model::Channel > & channel )

Add Channel.

Parameters

channel the Channel to add.

Todo:

Return list position?

Detect and handle duplicates?

References channels.

Referenced by update().

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void ome::xml::model::Pixels::addPlane ( ome::compat::shared_ptr< ome::xml::model::Plane > & plane )

Add Plane.

Parameters

plane the Plane to add.

Todo:

Return list position?

Detect and handle duplicates?

References planes.

Referenced by update().

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void ome::xml::model::Pixels::addTiffData ( ome::compat::shared_ptr< ome::xml::model::TiffData > & tiffData )

Add TiffData.

Parameters

tiffData the TiffData to add.

Todo:

Return list position?

Detect and handle duplicates?

References tiffDataBlocks.

Referenced by update().

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common::xml::dom::Element ome::xml::model::Pixels::asXMLElement ( common::xml::dom::Document & document ) const

virtual

Transform the object hierarchy rooted at this element to XML.

Parameters

document document for element creation

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::OMEModelObject.

References asXMLElementInternal(), and ome::common::xml::dom::Document::createElementNS().

common::xml::dom::Element ome::xml::model::Pixels::asXMLElementInternal	(	common::xml::dom::Document &	document,
		common::xml::dom::Element &	element
	)		const

protectedvirtual

Transform the object hierarchy rooted at this element to XML.

This internal implementation of asXMLelement also requires an XML element, which must not be null, or may be instantiated and passed from superclasses.

Parameters

document	XML document for element creation.
element	XML element for setting model data.

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::detail::OMEModelObject.

References annotationLinks, ome::common::xml::dom::Node::appendChild(), ome::xml::model::detail::OMEModelObject::asXMLElementInternal(), bigEndian, binDataBlocks, channels, ome::common::xml::dom::Document::createElementNS(), dimensionOrder, id, interleaved, metadataOnly, physicalSizeX, physicalSizeY, physicalSizeZ, planes, ome::common::xml::dom::Element::setAttribute(), significantBits, sizeC, sizeT, sizeX, sizeY, sizeZ, tiffDataBlocks, timeIncrement, and type.

Referenced by asXMLElement().

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ome::compat::shared_ptr< Pixels > ome::xml::model::Pixels::create	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

static

Create a Pixels model object from DOM element.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Returns: a new model object.

Referenced by ome::xml::model::Image::update().

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const std::string & ome::xml::model::Pixels::elementName ( ) const

virtual

Get the element name of this model object.

This will be the most-derived class name.

Returns: the element type.

Implements ome::xml::model::OMEModelObject.

References type.

ome::compat::shared_ptr< bool > ome::xml::model::Pixels::getBigEndian ( )

Get the BigEndian property.

Returns: the BigEndian property.

References bigEndian.

const ome::compat::shared_ptr< bool > ome::xml::model::Pixels::getBigEndian ( ) const

Get the BigEndian property.

Returns: the BigEndian property.

References bigEndian.

ome::compat::shared_ptr< ome::xml::model::BinData > & ome::xml::model::Pixels::getBinData ( std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type index )

Get BinData.

Parameters

index the index number of the BinData.

Returns: the BinData.

Exceptions

std::out_of_range if the index is invalid.

References binDataBlocks.

const ome::compat::shared_ptr< ome::xml::model::BinData > & ome::xml::model::Pixels::getBinData ( std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type index ) const

Get BinData.

Parameters

index the index number of the BinData.

Returns: the BinData.

Exceptions

std::out_of_range if the index is invalid.

References binDataBlocks.

std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > > & ome::xml::model::Pixels::getBinDataList ( )

Get the BinData list.

Returns: a reference to the list.

References binDataBlocks.

const std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > > & ome::xml::model::Pixels::getBinDataList ( ) const

Get the BinData list.

Returns: a reference to the list.

References binDataBlocks.

ome::compat::shared_ptr< ome::xml::model::Channel > & ome::xml::model::Pixels::getChannel ( std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type index )

Get Channel.

Parameters

index the index number of the Channel.

Returns: the Channel.

Exceptions

std::out_of_range if the index is invalid.

References channels.

const ome::compat::shared_ptr< ome::xml::model::Channel > & ome::xml::model::Pixels::getChannel ( std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type index ) const

Get Channel.

Parameters

index the index number of the Channel.

Returns: the Channel.

Exceptions

std::out_of_range if the index is invalid.

References channels.

std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > > & ome::xml::model::Pixels::getChannelList ( )

Get the Channel list.

Returns: a reference to the list.

References channels.

const std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > > & ome::xml::model::Pixels::getChannelList ( ) const

Get the Channel list.

Returns: a reference to the list.

References channels.

ome::xml::model::enums::DimensionOrder & ome::xml::model::Pixels::getDimensionOrder ( )

Get the DimensionOrder property.

Returns: the DimensionOrder property.

References dimensionOrder.

const ome::xml::model::enums::DimensionOrder & ome::xml::model::Pixels::getDimensionOrder ( ) const

Get the DimensionOrder property.

Returns: the DimensionOrder property.

References dimensionOrder.

const std::string & ome::xml::model::Pixels::getID ( ) const

Get the ID property.

Returns: the ID property.

References id.

Referenced by update().

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ome::compat::shared_ptr< bool > ome::xml::model::Pixels::getInterleaved ( )

Get the Interleaved property.

Returns: the Interleaved property.

References interleaved.

const ome::compat::shared_ptr< bool > ome::xml::model::Pixels::getInterleaved ( ) const

Get the Interleaved property.

Returns: the Interleaved property.

References interleaved.

const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Pixels::getLinkedAnnotation ( OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Annotation.

Parameters

index the index number of the Annotation.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References annotationLinks.

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type ome::xml::model::Pixels::getLinkedAnnotationList ( ) const

Get the linked Annotation list.

Returns: a reference to the list.

References annotationLinks.

ome::compat::shared_ptr< ome::xml::model::MetadataOnly > ome::xml::model::Pixels::getMetadataOnly ( )

Get the MetadataOnly property.

Returns: the MetadataOnly property.

References metadataOnly.

const ome::compat::shared_ptr< ome::xml::model::MetadataOnly > ome::xml::model::Pixels::getMetadataOnly ( ) const

Get the MetadataOnly property.

Returns: the MetadataOnly property.

References metadataOnly.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > ome::xml::model::Pixels::getPhysicalSizeX ( )

Get the PhysicalSizeX property.

Returns: the PhysicalSizeX property.

References physicalSizeX.

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > ome::xml::model::Pixels::getPhysicalSizeX ( ) const

Get the PhysicalSizeX property.

Returns: the PhysicalSizeX property.

References physicalSizeX.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > ome::xml::model::Pixels::getPhysicalSizeY ( )

Get the PhysicalSizeY property.

Returns: the PhysicalSizeY property.

References physicalSizeY.

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > ome::xml::model::Pixels::getPhysicalSizeY ( ) const

Get the PhysicalSizeY property.

Returns: the PhysicalSizeY property.

References physicalSizeY.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > ome::xml::model::Pixels::getPhysicalSizeZ ( )

Get the PhysicalSizeZ property.

Returns: the PhysicalSizeZ property.

References physicalSizeZ.

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > ome::xml::model::Pixels::getPhysicalSizeZ ( ) const

Get the PhysicalSizeZ property.

Returns: the PhysicalSizeZ property.

References physicalSizeZ.

ome::compat::shared_ptr< ome::xml::model::Plane > & ome::xml::model::Pixels::getPlane ( std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type index )

Get Plane.

Parameters

index the index number of the Plane.

Returns: the Plane.

Exceptions

std::out_of_range if the index is invalid.

References planes.

const ome::compat::shared_ptr< ome::xml::model::Plane > & ome::xml::model::Pixels::getPlane ( std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type index ) const

Get Plane.

Parameters

index the index number of the Plane.

Returns: the Plane.

Exceptions

std::out_of_range if the index is invalid.

References planes.

std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > > & ome::xml::model::Pixels::getPlaneList ( )

Get the Plane list.

Returns: a reference to the list.

References planes.

const std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > > & ome::xml::model::Pixels::getPlaneList ( ) const

Get the Plane list.

Returns: a reference to the list.

References planes.

ome::compat::shared_ptr< ome::xml::model::primitives::PositiveInteger > ome::xml::model::Pixels::getSignificantBits ( )

Get the SignificantBits property.

Returns: the SignificantBits property.

References significantBits.

const ome::compat::shared_ptr< ome::xml::model::primitives::PositiveInteger > ome::xml::model::Pixels::getSignificantBits ( ) const

Get the SignificantBits property.

Returns: the SignificantBits property.

References significantBits.

const ome::xml::model::primitives::PositiveInteger & ome::xml::model::Pixels::getSizeC ( ) const

Get the SizeC property.

Returns: the SizeC property.

References sizeC.

const ome::xml::model::primitives::PositiveInteger & ome::xml::model::Pixels::getSizeT ( ) const

Get the SizeT property.

Returns: the SizeT property.

References sizeT.

const ome::xml::model::primitives::PositiveInteger & ome::xml::model::Pixels::getSizeX ( ) const

Get the SizeX property.

Returns: the SizeX property.

References sizeX.

const ome::xml::model::primitives::PositiveInteger & ome::xml::model::Pixels::getSizeY ( ) const

Get the SizeY property.

Returns: the SizeY property.

References sizeY.

const ome::xml::model::primitives::PositiveInteger & ome::xml::model::Pixels::getSizeZ ( ) const

Get the SizeZ property.

Returns: the SizeZ property.

References sizeZ.

ome::compat::shared_ptr< ome::xml::model::TiffData > & ome::xml::model::Pixels::getTiffData ( std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type index )

Get TiffData.

Parameters

index the index number of the TiffData.

Returns: the TiffData.

Exceptions

std::out_of_range if the index is invalid.

References tiffDataBlocks.

const ome::compat::shared_ptr< ome::xml::model::TiffData > & ome::xml::model::Pixels::getTiffData ( std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type index ) const

Get TiffData.

Parameters

index the index number of the TiffData.

Returns: the TiffData.

Exceptions

std::out_of_range if the index is invalid.

References tiffDataBlocks.

std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > > & ome::xml::model::Pixels::getTiffDataList ( )

Get the TiffData list.

Returns: a reference to the list.

References tiffDataBlocks.

const std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > > & ome::xml::model::Pixels::getTiffDataList ( ) const

Get the TiffData list.

Returns: a reference to the list.

References tiffDataBlocks.

ome::compat::shared_ptr< double > ome::xml::model::Pixels::getTimeIncrement ( )

Get the TimeIncrement property.

Returns: the TimeIncrement property.

References timeIncrement.

const ome::compat::shared_ptr< double > ome::xml::model::Pixels::getTimeIncrement ( ) const

Get the TimeIncrement property.

Returns: the TimeIncrement property.

References timeIncrement.

ome::xml::model::enums::PixelType & ome::xml::model::Pixels::getType ( )

Get the Type property.

Returns: the Type property.

References type.

const ome::xml::model::enums::PixelType & ome::xml::model::Pixels::getType ( ) const

Get the Type property.

Returns: the Type property.

References type.

const std::string & ome::xml::model::Pixels::getXMLNamespace ( ) const

virtual

Get the XML namespace for this model object.

Returns: the XML namespace.

Implements ome::xml::model::OMEModelObject.

bool ome::xml::model::Pixels::link	(	ome::compat::shared_ptr< Reference > &	reference,
		ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &	object
	)

Link a given OME model object to this model object.

Parameters

reference	type qualifier for the reference. This should be the corresponding reference type for object. If, for example, object is of type Image, reference must be of type ImageRef.
object	Model object to link to.

Returns: true if this model object was able to handle the reference, otherwise false.

Todo:: the use of reference to provide type information for the type of object is unconventional and quite possibly unnecessary–a simple string or type_info would suffice for what it's being used for, if it's needed at all. Is this true for all cases? The implementation also needs to do strict checking of the object type; it's not currently failing if it's of the wrong type. This applies to all generated model objects implementing this interface.

Todo:: This bit is silly; why do we have two dynamic_casts here.

References annotationLinks, ome::xml::model::detail::OMEModelObject::link(), ome::xml::model::Annotation::linkPixels(), ome::xml::model::detail::OMEModelObject::logger, and type.

bool ome::xml::model::Pixels::linkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Link Annotation.

Parameters

annotation the Annotation to link.

Returns: true if the object was added to the internal annotationLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References annotationLinks, and type.

void ome::xml::model::Pixels::removeBinData ( ome::compat::shared_ptr< ome::xml::model::BinData > & binData )

Remove BinData.

Parameters

binData the BinData to remove.

Todo:

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References binDataBlocks.

void ome::xml::model::Pixels::removeChannel ( ome::compat::shared_ptr< ome::xml::model::Channel > & channel )

Remove Channel.

Parameters

channel the Channel to remove.

Todo:

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References channels.

void ome::xml::model::Pixels::removePlane ( ome::compat::shared_ptr< ome::xml::model::Plane > & plane )

Remove Plane.

Parameters

plane the Plane to remove.

Todo:

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References planes.

void ome::xml::model::Pixels::removeTiffData ( ome::compat::shared_ptr< ome::xml::model::TiffData > & tiffData )

Remove TiffData.

Parameters

tiffData the TiffData to remove.

Todo:

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References tiffDataBlocks.

void ome::xml::model::Pixels::setBigEndian ( ome::compat::shared_ptr< bool > & bigEndian )

Set the BigEndian property.

Parameters

bigEndian the value to set.

References bigEndian.

Referenced by update().

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void ome::xml::model::Pixels::setBinData	(	std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type	index,
		ome::compat::shared_ptr< ome::xml::model::BinData > &	binData
	)

Set BinData.

Parameters

index	the index number of the BinData.
binData	the BinData to set.

Exceptions

std::out_of_range if the index is invalid.

References binDataBlocks.

void ome::xml::model::Pixels::setChannel	(	std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type	index,
		ome::compat::shared_ptr< ome::xml::model::Channel > &	channel
	)

Set Channel.

Parameters

index	the index number of the Channel.
channel	the Channel to set.

Exceptions

std::out_of_range if the index is invalid.

References channels.

void ome::xml::model::Pixels::setDimensionOrder ( const ome::xml::model::enums::DimensionOrder & dimensionOrder )

Set the DimensionOrder property.

Parameters

dimensionOrder the value to set.

References dimensionOrder.

Referenced by update().

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void ome::xml::model::Pixels::setID ( const std::string & id )

Set the ID property.

Parameters

id	the value to set.

References id.

Referenced by update().

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void ome::xml::model::Pixels::setInterleaved ( ome::compat::shared_ptr< bool > & interleaved )

Set the Interleaved property.

Parameters

interleaved the value to set.

References interleaved.

Referenced by update().

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const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Pixels::setLinkedAnnotation	(	OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Annotation > &	annotation
	)

Set linked Annotation.

Note: The index must be valid.

Parameters

index	the index number of the Annotation.
annotation	the Annotation to set.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References annotationLinks.

void ome::xml::model::Pixels::setMetadataOnly ( ome::compat::shared_ptr< ome::xml::model::MetadataOnly > & metadataOnly )

Set the MetadataOnly property.

Parameters

metadataOnly the value to set.

References metadataOnly.

Referenced by update().

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void ome::xml::model::Pixels::setPhysicalSizeX ( ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > & physicalSizeX )

Set the PhysicalSizeX property.

Parameters

physicalSizeX the value to set.

References physicalSizeX.

Referenced by update().

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void ome::xml::model::Pixels::setPhysicalSizeY ( ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > & physicalSizeY )

Set the PhysicalSizeY property.

Parameters

physicalSizeY the value to set.

References physicalSizeY.

Referenced by update().

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void ome::xml::model::Pixels::setPhysicalSizeZ ( ome::compat::shared_ptr< ome::xml::model::primitives::PositiveFloat > & physicalSizeZ )

Set the PhysicalSizeZ property.

Parameters

physicalSizeZ the value to set.

References physicalSizeZ.

Referenced by update().

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void ome::xml::model::Pixels::setPlane	(	std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type	index,
		ome::compat::shared_ptr< ome::xml::model::Plane > &	plane
	)

Set Plane.

Parameters

index	the index number of the Plane.
plane	the Plane to set.

Exceptions

std::out_of_range if the index is invalid.

References planes.

void ome::xml::model::Pixels::setSignificantBits ( ome::compat::shared_ptr< ome::xml::model::primitives::PositiveInteger > & significantBits )

Set the SignificantBits property.

Parameters

significantBits the value to set.

References significantBits.

Referenced by update().

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void ome::xml::model::Pixels::setSizeC ( const ome::xml::model::primitives::PositiveInteger & sizeC )

Set the SizeC property.

Parameters

sizeC the value to set.

References sizeC.

Referenced by update().

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void ome::xml::model::Pixels::setSizeT ( const ome::xml::model::primitives::PositiveInteger & sizeT )

Set the SizeT property.

Parameters

sizeT the value to set.

References sizeT.

Referenced by update().

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void ome::xml::model::Pixels::setSizeX ( const ome::xml::model::primitives::PositiveInteger & sizeX )

Set the SizeX property.

Parameters

sizeX the value to set.

References sizeX.

Referenced by update().

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void ome::xml::model::Pixels::setSizeY ( const ome::xml::model::primitives::PositiveInteger & sizeY )

Set the SizeY property.

Parameters

sizeY the value to set.

References sizeY.

Referenced by update().

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void ome::xml::model::Pixels::setSizeZ ( const ome::xml::model::primitives::PositiveInteger & sizeZ )

Set the SizeZ property.

Parameters

sizeZ the value to set.

References sizeZ.

Referenced by update().

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void ome::xml::model::Pixels::setTiffData	(	std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type	index,
		ome::compat::shared_ptr< ome::xml::model::TiffData > &	tiffData
	)

Set TiffData.

Parameters

index	the index number of the TiffData.
tiffData	the TiffData to set.

Exceptions

std::out_of_range if the index is invalid.

References tiffDataBlocks.

void ome::xml::model::Pixels::setTimeIncrement ( ome::compat::shared_ptr< double > & timeIncrement )

Set the TimeIncrement property.

Parameters

timeIncrement the value to set.

References timeIncrement.

Referenced by update().

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void ome::xml::model::Pixels::setType ( const ome::xml::model::enums::PixelType & type )

Set the Type property.

Parameters

type	the value to set.

References type.

Referenced by update().

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std::vector< ome::compat::shared_ptr< ome::xml::model::BinData > >::size_type ome::xml::model::Pixels::sizeOfBinDataList ( ) const

Get size of linked BinData list.

Returns: the size of the list.

References binDataBlocks.

std::vector< ome::compat::shared_ptr< ome::xml::model::Channel > >::size_type ome::xml::model::Pixels::sizeOfChannelList ( ) const

Get size of linked Channel list.

Returns: the size of the list.

References channels.

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type ome::xml::model::Pixels::sizeOfLinkedAnnotationList ( ) const

Get size of linked Annotation list.

Returns: the size of the list.

References annotationLinks.

std::vector< ome::compat::shared_ptr< ome::xml::model::Plane > >::size_type ome::xml::model::Pixels::sizeOfPlaneList ( ) const

Get size of linked Plane list.

Returns: the size of the list.

References planes.

std::vector< ome::compat::shared_ptr< ome::xml::model::TiffData > >::size_type ome::xml::model::Pixels::sizeOfTiffDataList ( ) const

Get size of linked TiffData list.

Returns: the size of the list.

References tiffDataBlocks.

bool ome::xml::model::Pixels::unlinkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Unlink Annotation.

Parameters

annotation the Annotation to unlink.

Returns: true if the Annotation was unlinked, otherwise false if the Annotation was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References annotationLinks.

void ome::xml::model::Pixels::update	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

virtual

Update the object hierarchy recursively from an XML DOM tree.

Note: No properties are removed, only added or updated.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Implements ome::xml::model::OMEModelObject.