QuantumStrategy (OMERO API)

java.lang.Object
- omeis.providers.re.quantum.QuantumStrategy

Direct Known Subclasses:

BinaryMaskQuantizer, Quantization_32_bit, Quantization_8_16_bit, Quantization_float
```
public abstract class QuantumStrategy
extends java.lang.Object
```
Subclasses Work on explicit pixel types. Taking into account the pixel types, transform the pixel intensity value passed to quantize(double) by delegating to the configured quantum map. Encapsulate a computation strategy for the quantization process i.e. LUT and Approximation. Implement onWindowChange() to get notified when the input interval changes.

Since:

OME2.2

Version:

2.2 (Internal version: $Revision$ $Date: 2005/06/20 14:12:05 $)

Author:

Jean-Marie Burel j.burel@dundee.ac.uk,
Andrea Falconi a.falconi@dundee.ac.uk

Field Summary

Fields
Modifier and Type	Field and Description
`static int`	`DECILE` Determines the number of sub-intervals of the [globalMin, globalMax] interval.
`static int`	`MAX` Maximum value (`255`) allowed for the upper bound of the codomain interval.
`static int`	`MIN` Minimum value (`0`) allowed for the lower bound of the codomain interval.
`protected Pixels`	`pixels` The pixels this strategy is for.
`protected QuantumDef`	`qDef` Reference to a quantumDef object.
`protected QuantumMap`	`valueMapper` Reference to the value mapper.

Constructor Summary

Constructors
Modifier Constructor and Description

protected QuantumStrategy(QuantumDef qd, Pixels pixels)
Creates a new instance.

Constructors
Modifier	Constructor and Description
`protected`	`QuantumStrategy(QuantumDef qd, Pixels pixels)` Creates a new instance.

Method Summary

All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method and Description
`double`	`getCurveCoefficient()` Returns the coefficient identifying a curve within a given family.
`Family`	`getFamily()` Returns the mapping family.
`double`	`getGlobalMax()` Returns the maximum of all maxima.
`double`	`getGlobalMin()` Returns the minimum of all minima.
`protected java.lang.Double`	`getMiddleRange(double value)` Returns the range the values belongs to.
`boolean`	`getNoiseReduction()` Returns `true` if the noise reduction algorithm is turned on, `false` if turned off.
`double`	`getOriginalGlobalMax()` Returns the original maximum of all minima.
`double`	`getOriginalGlobalMin()` Returns the original minimum of all minima.
`double`	`getPixelsTypeMax()` Returns the upper bound of the pixels range or `0` if the value couldn't be set.
`double`	`getPixelsTypeMin()` Returns the lower bound of the pixels range or `0` if the value couldn't be set.
`double`	`getWindowEnd()` Returns the upper bound of the input interval.
`double`	`getWindowStart()` Returns the lower bound of the input interval.
`protected abstract void`	`onWindowChange()` Notifies when the input interval has changed or the mapping strategy has changed.
`abstract int`	`quantize(double value)` Maps a value from [windowStart, windowEnd] to a value in the codomain interval.
`void`	`setExtent(double globalMin, double globalMax)` Sets the maximum range of the input window.
`void`	`setMap(QuantumMap qMap)` Sets the quantum map.
`void`	`setMapping(Family family, double k, boolean noiseReduction)` Sets the selected family, the curve coefficient and the noise reduction flag.
`void`	`setQuantizationMap(Family family, double k, boolean noiseReduction)` Sets the selected family, the curve coefficient and the noise reduction flag and rebuilds the look-up table.
`void`	`setWindow(double start, double end)` Sets the input window interval.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - MAX
```
public static final int MAX
```
    Maximum value (255) allowed for the upper bound of the codomain interval.
    
    See Also:
    
    Constant Field Values
  - MIN
```
public static final int MIN
```
    Minimum value (0) allowed for the lower bound of the codomain interval.
    
    See Also:
    
    Constant Field Values
  - DECILE
```
public static final int DECILE
```
    Determines the number of sub-intervals of the [globalMin, globalMax] interval.
    
    See Also:
    
    Constant Field Values
  - qDef
```
protected final QuantumDef qDef
```
    Reference to a quantumDef object.
  - pixels
```
protected final Pixels pixels
```
    The pixels this strategy is for.
  - valueMapper
```
protected QuantumMap valueMapper
```
    Reference to the value mapper.
- Constructor Detail
  - QuantumStrategy
```
protected QuantumStrategy(QuantumDef qd,
                          Pixels pixels)
```
    Creates a new instance.
    
    Parameters:
    
    qd - The QuantumDef this strategy is for.
    
    pixels - The pixels to handle.
- Method Detail
  - getMiddleRange
```
protected java.lang.Double getMiddleRange(double value)
```
    Returns the range the values belongs to.
    
    Parameters:
    
    value - The value to handle
    
    Returns:
    
    See above.
  - setExtent
```
public void setExtent(double globalMin,
                      double globalMax)
```
    Sets the maximum range of the input window.
    
    Parameters:
    
    globalMin - The minimum of all minima for a specified stack.
    
    globalMax - The maximum of all maxima for a specified stack.
  - setWindow
```
public void setWindow(double start,
                      double end)
```
    Sets the input window interval.
    
    Parameters:
    
    start - The lower bound of the interval.
    
    end - The upper bound of the interval.
  - setMapping
```
public void setMapping(Family family,
                       double k,
                       boolean noiseReduction)
```
    Sets the selected family, the curve coefficient and the noise reduction flag.
    
    Parameters:
    
    family - The mapping family.
    
    k - The curve coefficient.
    
    noiseReduction - The noise reduction flag.
  - setQuantizationMap
```
public void setQuantizationMap(Family family,
                               double k,
                               boolean noiseReduction)
```
    Sets the selected family, the curve coefficient and the noise reduction flag and rebuilds the look-up table.
    
    Parameters:
    
    family - The mapping family.
    
    k - The curve coefficient.
    
    noiseReduction - The noise reduction flag.
  - setMap
```
public void setMap(QuantumMap qMap)
```
    Sets the quantum map.
    
    Parameters:
    
    qMap - The value to set.
  - getFamily
```
public Family getFamily()
```
    Returns the mapping family.
    
    Returns:
    
    See above.
  - getCurveCoefficient
```
public double getCurveCoefficient()
```
    Returns the coefficient identifying a curve within a given family.
    
    Returns:
    
    See above.
  - getNoiseReduction
```
public boolean getNoiseReduction()
```
    Returns true if the noise reduction algorithm is turned on, false if turned off.
    
    Returns:
    
    See above.
  - getGlobalMin
```
public double getGlobalMin()
```
    Returns the minimum of all minima.
    
    Returns:
    
    See above.
  - getGlobalMax
```
public double getGlobalMax()
```
    Returns the maximum of all maxima.
    
    Returns:
    
    See above.
  - getOriginalGlobalMin
```
public double getOriginalGlobalMin()
```
    Returns the original minimum of all minima.
    
    Returns:
    
    See above.
  - getOriginalGlobalMax
```
public double getOriginalGlobalMax()
```
    Returns the original maximum of all minima.
    
    Returns:
    
    See above.
  - getPixelsTypeMin
```
public double getPixelsTypeMin()
```
    Returns the lower bound of the pixels range or 0 if the value couldn't be set.
    
    Returns:
    
    See above.
  - getPixelsTypeMax
```
public double getPixelsTypeMax()
```
    Returns the upper bound of the pixels range or 0 if the value couldn't be set.
    
    Returns:
    
    See above.
  - getWindowStart
```
public double getWindowStart()
```
    Returns the lower bound of the input interval.
    
    Returns:
    
    See above.
  - getWindowEnd
```
public double getWindowEnd()
```
    Returns the upper bound of the input interval.
    
    Returns:
    
    See above.
  - onWindowChange
```
protected abstract void onWindowChange()
```
    Notifies when the input interval has changed or the mapping strategy has changed.
  - quantize
```
public abstract int quantize(double value)
                      throws QuantizationException
```
    Maps a value from [windowStart, windowEnd] to a value in the codomain interval.
    
    Parameters:
    
    value - The pixel intensity value.
    
    Returns:
    
    The value in the codomain interval i.e. sub-interval of [0, 255].
    
    Throws:
    
    QuantizationException - If the specified value is not in the interval [globalMin, globalMax].

Class QuantumStrategy

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

MAX

MIN

DECILE

qDef

pixels

valueMapper

Constructor Detail

QuantumStrategy

Method Detail

getMiddleRange

setExtent

setWindow

setMapping

setQuantizationMap

setMap

getFamily

getCurveCoefficient

getNoiseReduction

getGlobalMin

getGlobalMax

getOriginalGlobalMin

getOriginalGlobalMax

getPixelsTypeMin

getPixelsTypeMax

getWindowStart

getWindowEnd

onWindowChange

quantize