OmeroJava API
public class OMEROMetadataStoreClient extends java.lang.Object implements MetadataStore, IMinMaxStore, IObjectContainerStore
MetadataStore. It is
responsible for handling metadata from Bio-Formats and maintaining
communication with an OMERO server.| Modifier and Type | Field and Description |
|---|---|
static java.lang.String |
OMERO_EMISSION_FILTER_SUFFIX
Emission filter LSID suffix.
|
static java.lang.String |
OMERO_EXCITATION_FILTER_SUFFIX
Excitation filter LSID suffix.
|
| Constructor and Description |
|---|
OMEROMetadataStoreClient() |
| Modifier and Type | Method and Description |
|---|---|
omero.model.Dataset |
addDataset(java.lang.String datasetName,
java.lang.String datasetDescription,
omero.model.Project project) |
boolean |
addModelProcessor(ModelProcessor processor)
Adds a model processor to the end of the processing chain.
|
omero.model.Project |
addProject(java.lang.String projectName,
java.lang.String projectDescription) |
void |
addReference(LSID source,
LSID target)
Adds a reference to the reference cache.
|
omero.model.Screen |
addScreen(java.lang.String screenName,
java.lang.String screenDescription) |
void |
closeServices()
Closes all stateful services.
|
int |
countCachedContainers(java.lang.Class<? extends omero.model.IObject> klass,
int... indexes)
Counts the number of containers the MetadataStore has of a given class
and at a given index of the hierarchy if specified.
|
int |
countCachedReferences(java.lang.Class<? extends omero.model.IObject> source,
java.lang.Class<? extends omero.model.IObject> target)
Counts the number of references the MetadataStore has between objects
of two classes.
|
void |
createRoot() |
void |
finalizePixelStore()
Closes the active raw pixels store.
|
java.util.Map<java.lang.Class<? extends omero.model.IObject>,java.util.Map<java.lang.String,omero.metadatastore.IObjectContainer>> |
getAuthoritativeContainerCache()
Returns the current authoritative LSID container cache.
|
omero.model.Channel |
getChannel(int imageIndex,
int channelIndex) |
java.lang.String |
getConfigValue(java.lang.String key)
Retrieves a configuration value from the
IConfig service. |
java.util.Map<LSID,omero.metadatastore.IObjectContainer> |
getContainerCache()
Returns the current container cache.
|
java.util.List<omero.model.Dataset> |
getDatasets(omero.model.Project p) |
java.util.List<omero.model.Dataset> |
getDatasetsWithoutProjects() |
int |
getDefaultBatchSize() |
int |
getDefaultBlockSize() |
int |
getDefaultGroupLevel()
Deprecated.
|
java.lang.String |
getDefaultGroupName()
Retrieve the default group's name
|
omero.model.Detector |
getDetector(int instrumentIndex,
int detectorIndex) |
EnumerationProvider |
getEnumerationProvider()
Retrieves the active enumeration provider.
|
long |
getExperimenterID() |
omero.model.Filament |
getFilament(int instrumentIndex,
int lightSourceIndex) |
omero.model.FilterSet |
getFilterSet(int instrumentIndex,
int filterSetIndex) |
omero.model.ImagingEnvironment |
getImagingEnvironment(int imageIndex) |
InstanceProvider |
getInstanceProvider()
Retrieves the active instance provider.
|
omero.metadatastore.IObjectContainer |
getIObjectContainer(java.lang.Class<? extends omero.model.IObject> klass,
java.util.LinkedHashMap<Index,java.lang.Integer> indexes)
Retrieves an IObject container for a given class and location within the
OME-XML data model.
|
java.util.List<omero.metadatastore.IObjectContainer> |
getIObjectContainers(java.lang.Class<? extends omero.model.IObject> klass)
Retrieves all IObject containers of a given class.
|
omero.api.IQueryPrx |
getIQuery() |
ClientKeepAlive |
getKeepAlive()
Returns clientKeepAlive created in store
|
omero.model.Laser |
getLaser(int instrumentIndex,
int lightSourceIndex) |
omero.model.LightEmittingDiode |
getLightEmittingDiode(int instrumentIndex,
int lightSourceIndex) |
omero.model.Line |
getLine(int ROIIndex,
int shapeIndex) |
omero.model.ListAnnotation |
getListAnnotation(int listAnnotationIndex) |
omero.model.LongAnnotation |
getLongAnnotation(int longAnnotationIndex) |
omero.model.Mask |
getMask(int ROIIndex,
int shapeIndex) |
omero.model.MicrobeamManipulation |
getMicrobeamManipulation(int experimentIndex,
int microbeamManipulationIndex) |
omero.model.LightSettings |
getMicrobeamManipulationLightSourceSettings(int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
java.util.List<ModelProcessor> |
getModelProcessors()
Retrieves the current list of model processors the metadata store is
using.
|
omero.model.Objective |
getObjective(int instrumentIndex,
int objectiveIndex) |
omero.model.ObjectiveSettings |
getObjectiveSettings(int imageIndex) |
omero.model.Project |
getProject(long projectId) |
java.util.List<omero.model.Project> |
getProjects() |
IFormatReader |
getReader()
Returns the current Bio-Formats reader that has been used to populate
the container store.
|
java.util.Map<LSID,java.util.List<LSID>> |
getReferenceCache()
Returns the current reference cache.
|
java.util.Map<java.lang.String,java.lang.String[]> |
getReferenceStringCache()
Returns the current string based reference cache.
|
long |
getRepositorySpace() |
ome.xml.meta.MetadataRoot |
getRoot() |
java.util.List<omero.model.Screen> |
getScreens() |
omero.api.ServiceFactoryPrx |
getServiceFactory()
Returns the currently active service factory.
|
omero.model.IObject |
getSourceObject(LSID LSID)
Retrieves an OMERO Blitz source object for a given LSID.
|
<T extends omero.model.IObject> |
getSourceObjects(java.lang.Class<T> klass)
Retrieves all OMERO Blitz source objects of a given class.
|
<T extends omero.model.IObject> |
getTarget(java.lang.Class<T> klass,
long id)
Helper method to retrieve an object from iQuery
|
int[] |
getTileSize(java.lang.Long pixId)
Retrieves the suggested tile size for a pixels set.
|
java.util.List<omero.model.Annotation> |
getUserSpecifiedAnnotations()
Returns the user specified annotations.
|
java.lang.String |
getUserSpecifiedDescription()
Returns the user specified image/plate description.
|
java.lang.String |
getUserSpecifiedImageName() |
java.lang.String |
getUserSpecifiedName()
Returns the user specified image/plate name.
|
java.lang.Double[] |
getUserSpecifiedPhysicalPixelSizes()
Returns the user specified physical pixel sizes.
|
omero.model.IObject |
getUserSpecifiedTarget()
Returns the user-specified linkage target (usually a Dataset for Images)
and a Screen for Plates).
|
boolean |
hasReference(LSID source,
LSID target)
Checks to see if there is currently an active reference for two LSIDs.
|
protected void |
ignoreAnnotator(java.lang.String method,
java.lang.Object... args)
For all cases of an annotator being ignore (WARN).
|
protected void |
ignoreInsecure(java.lang.String method,
java.lang.Object... args)
Called when saving a property to OMERO would result in a SecurityViolation
(DEBUG).
|
protected void |
ignoreMissing(java.lang.String method,
java.lang.Object... args)
Called when a property is missing from the OMERO model (WARN).
|
protected void |
ignoreUnneeded(java.lang.String method,
java.lang.Object... args)
Called when a property is not needed in OMERO since the data can
be gotten elsewhere, as in directly from the file itself (DEBUG).
|
protected void |
ignoreUnsupported(java.lang.String method,
java.lang.Object... args)
Called when a property is not expected in a file to be imported.
|
void |
initialize(client c)
Initializes the MetadataStore with an already logged in, ready to go
service factory.
|
void |
initialize(omero.api.ServiceFactoryPrx serviceFactory)
Initializes the MetadataStore with an already logged in, ready to go
service factory.
|
void |
initialize(java.lang.String server,
int port,
java.lang.String sessionKey)
Initializes the MetadataStore by joining an existing session.
|
void |
initialize(java.lang.String server,
int port,
java.lang.String sessionKey,
boolean isSecure)
Initializes the MetadataStore by joining an existing session.
|
void |
initialize(java.lang.String username,
java.lang.String password,
java.lang.String server,
int port)
Initializes the MetadataStore taking string parameters to feed to the
OMERO Blitz client object.
|
void |
initialize(java.lang.String username,
java.lang.String password,
java.lang.String server,
int port,
boolean isSecure)
Initializes the MetadataStore taking string parameters to feed to the
OMERO Blitz client object.
|
void |
initialize(java.lang.String username,
java.lang.String password,
java.lang.String server,
int port,
java.lang.Long group,
boolean isSecure)
Initializes the MetadataStore taking string parameters to feed to the
OMERO Blitz client object.
|
boolean |
isEncryptedConnection() |
java.util.List<omero.grid.InteractiveProcessorPrx> |
launchProcessing() |
void |
logout()
Destroys the sessionFactory and closes the client.
|
void |
logVersionInfo(java.lang.String clientVersion) |
java.util.Map<java.lang.Long,java.lang.String> |
mapUserGroups()
Maps the user's groups for use by ScreenLogin.registerGroup()
Also strips system groups from this map
|
void |
ping()
Pings all registered OMERO Blitz proxies.
|
void |
populateMinMax()
Sends all the minimums and maximums for all images processed so far to
the server.
|
void |
postProcess()
Post processes the internal structure of the client side MetadataStore.
|
void |
prepare(java.util.Map<java.lang.Integer,omero.model.Image> existingMetadata)
Prepares the metadata store using existing metadata that has been
pre-registered by OMERO.fs.
|
void |
preparePixelsStore(java.util.List<java.lang.Long> pixelsIds)
Prepares the server side RawPixelsStore.
|
void |
removeIObjectContainer(LSID lsid)
Removes an IObject container from within the OME-XML data model store.
|
void |
removeModelProcessor(ModelProcessor processor)
Removes a model processor from use.
|
void |
resetDefaultsAndGenerateThumbnails(java.util.List<java.lang.Long> plateIds,
java.util.List<java.lang.Long> pixelsIds)
Resets the defaults and generates thumbnails for a given set of Pixels
IDs.
|
java.util.Map<java.lang.String,java.util.List<omero.model.IObject>> |
saveToDB(omero.model.FilesetJobLink link)
Updates the server side MetadataStore with a list of our objects and
references and saves them into the database.
|
void |
setArcAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex) |
void |
setArcID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex) |
void |
setArcLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setArcManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex) |
void |
setArcModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex) |
void |
setArcPower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex) |
void |
setArcSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setArcType(ome.xml.model.enums.ArcType type,
int instrumentIndex,
int lightSourceIndex) |
void |
setBinaryFileBinData(byte[] binData,
int fileAnnotationIndex) |
void |
setBinaryFileBinDataBigEndian(java.lang.Boolean isBigEndian,
int fileAnnotationIndex) |
void |
setBinaryFileBinDataCompression(ome.xml.model.enums.Compression compression,
int fileAnnotationIndex) |
void |
setBinaryFileBinDataLength(ome.xml.model.primitives.NonNegativeLong length,
int fileAnnotationIndex) |
void |
setBinaryFileFileName(java.lang.String fileName,
int fileAnnotationIndex) |
void |
setBinaryFileMIMEType(java.lang.String mimeType,
int fileAnnotationIndex) |
void |
setBinaryFileSize(ome.xml.model.primitives.NonNegativeLong size,
int fileAnnotationIndex) |
void |
setBinaryOnlyMetadataFile(java.lang.String metadataFile) |
void |
setBinaryOnlyUUID(java.lang.String uuid) |
void |
setBooleanAnnotationAnnotationRef(java.lang.String annotation,
int booleanAnnotationIndex,
int annotationRefIndex) |
void |
setBooleanAnnotationAnnotator(java.lang.String value,
int index) |
void |
setBooleanAnnotationDescription(java.lang.String description,
int booleanAnnotationIndex) |
void |
setBooleanAnnotationID(java.lang.String id,
int booleanAnnotationIndex) |
void |
setBooleanAnnotationNamespace(java.lang.String namespace,
int booleanAnnotationIndex) |
void |
setBooleanAnnotationValue(java.lang.Boolean value,
int booleanAnnotationIndex) |
void |
setChannelAcquisitionMode(ome.xml.model.enums.AcquisitionMode acquisitionMode,
int imageIndex,
int channelIndex) |
void |
setChannelAnnotationRef(java.lang.String annotation,
int imageIndex,
int channelIndex,
int annotationRefIndex) |
void |
setChannelColor(ome.xml.model.primitives.Color color,
int imageIndex,
int channelIndex) |
void |
setChannelContrastMethod(ome.xml.model.enums.ContrastMethod contrastMethod,
int imageIndex,
int channelIndex) |
void |
setChannelEmissionWavelength(ome.units.quantity.Length emissionWavelength,
int imageIndex,
int channelIndex) |
void |
setChannelExcitationWavelength(ome.units.quantity.Length excitationWavelength,
int imageIndex,
int channelIndex) |
void |
setChannelFilterSetRef(java.lang.String filterSet,
int imageIndex,
int channelIndex) |
void |
setChannelFluor(java.lang.String fluor,
int imageIndex,
int channelIndex) |
void |
setChannelGlobalMinMax(int channel,
double minimum,
double maximum,
int series) |
void |
setChannelID(java.lang.String id,
int imageIndex,
int channelIndex) |
void |
setChannelIlluminationType(ome.xml.model.enums.IlluminationType illuminationType,
int imageIndex,
int channelIndex) |
void |
setChannelLightSourceSettingsAttenuation(ome.xml.model.primitives.PercentFraction attenuation,
int imageIndex,
int channelIndex) |
void |
setChannelLightSourceSettingsID(java.lang.String id,
int imageIndex,
int channelIndex) |
void |
setChannelLightSourceSettingsWavelength(ome.units.quantity.Length wavelength,
int imageIndex,
int channelIndex) |
void |
setChannelName(java.lang.String name,
int imageIndex,
int channelIndex) |
void |
setChannelNDFilter(java.lang.Double ndfilter,
int imageIndex,
int channelIndex) |
void |
setChannelPinholeSize(ome.units.quantity.Length pinholeSize,
int imageIndex,
int channelIndex) |
void |
setChannelPockelCellSetting(java.lang.Integer pockelCellSetting,
int imageIndex,
int channelIndex) |
void |
setChannelSamplesPerPixel(ome.xml.model.primitives.PositiveInteger samplesPerPixel,
int imageIndex,
int channelIndex) |
void |
setCommentAnnotationAnnotationRef(java.lang.String annotation,
int commentAnnotationIndex,
int annotationRefIndex) |
void |
setCommentAnnotationAnnotator(java.lang.String value,
int index) |
void |
setCommentAnnotationDescription(java.lang.String description,
int commentAnnotationIndex) |
void |
setCommentAnnotationID(java.lang.String id,
int commentAnnotationIndex) |
void |
setCommentAnnotationNamespace(java.lang.String namespace,
int commentAnnotationIndex) |
void |
setCommentAnnotationValue(java.lang.String value,
int commentAnnotationIndex) |
void |
setCurrentGroup(long groupID)
Changes the default group of the currently logged in user.
|
void |
setCurrentLogFile(java.lang.String logFilename,
java.lang.String token) |
void |
setDatasetAnnotationRef(java.lang.String annotation,
int datasetIndex,
int annotationRefIndex) |
void |
setDatasetDescription(java.lang.String description,
int datasetIndex) |
void |
setDatasetExperimenterGroupRef(java.lang.String group,
int datasetIndex) |
void |
setDatasetExperimenterRef(java.lang.String experimenter,
int datasetIndex) |
void |
setDatasetID(java.lang.String id,
int datasetIndex) |
void |
setDatasetImageRef(java.lang.String image,
int datasetIndex,
int imageRefIndex) |
void |
setDatasetName(java.lang.String name,
int datasetIndex) |
void |
setDetectorAmplificationGain(java.lang.Double amplificationGain,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int detectorIndex,
int annotationRefIndex) |
void |
setDetectorGain(java.lang.Double gain,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorID(java.lang.String id,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorModel(java.lang.String model,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorOffset(java.lang.Double offset,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorSettingsBinning(ome.xml.model.enums.Binning binning,
int imageIndex,
int channelIndex) |
void |
setDetectorSettingsGain(java.lang.Double gain,
int imageIndex,
int channelIndex) |
void |
setDetectorSettingsID(java.lang.String id,
int imageIndex,
int channelIndex) |
void |
setDetectorSettingsIntegration(ome.xml.model.primitives.PositiveInteger integration,
int imageIndex,
int channelIndex) |
void |
setDetectorSettingsOffset(java.lang.Double offset,
int imageIndex,
int channelIndex) |
void |
setDetectorSettingsReadOutRate(ome.units.quantity.Frequency readOutRate,
int imageIndex,
int channelIndex) |
void |
setDetectorSettingsVoltage(ome.units.quantity.ElectricPotential voltage,
int imageIndex,
int channelIndex) |
void |
setDetectorSettingsZoom(java.lang.Double zoom,
int imageIndex,
int channelIndex) |
void |
setDetectorType(ome.xml.model.enums.DetectorType type,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorVoltage(ome.units.quantity.ElectricPotential voltage,
int instrumentIndex,
int detectorIndex) |
void |
setDetectorZoom(java.lang.Double zoom,
int instrumentIndex,
int detectorIndex) |
void |
setDichroicAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int dichroicIndex,
int annotationRefIndex) |
void |
setDichroicID(java.lang.String id,
int instrumentIndex,
int dichroicIndex) |
void |
setDichroicLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int dichroicIndex) |
void |
setDichroicManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int dichroicIndex) |
void |
setDichroicModel(java.lang.String model,
int instrumentIndex,
int dichroicIndex) |
void |
setDichroicSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int dichroicIndex) |
void |
setDoubleAnnotationAnnotationRef(java.lang.String annotation,
int doubleAnnotationIndex,
int annotationRefIndex) |
void |
setDoubleAnnotationAnnotator(java.lang.String value,
int index) |
void |
setDoubleAnnotationDescription(java.lang.String description,
int doubleAnnotationIndex) |
void |
setDoubleAnnotationID(java.lang.String id,
int doubleAnnotationIndex) |
void |
setDoubleAnnotationNamespace(java.lang.String namespace,
int doubleAnnotationIndex) |
void |
setDoubleAnnotationValue(java.lang.Double value,
int doubleAnnotationIndex) |
void |
setEllipseAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setEllipseFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex) |
void |
setEllipseFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setEllipseFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setEllipseFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setEllipseFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setEllipseID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setEllipseLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setEllipseRadiusX(java.lang.Double radiusX,
int ROIIndex,
int shapeIndex) |
void |
setEllipseRadiusY(java.lang.Double radiusY,
int ROIIndex,
int shapeIndex) |
void |
setEllipseStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex) |
void |
setEllipseStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setEllipseStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setEllipseText(java.lang.String text,
int ROIIndex,
int shapeIndex) |
void |
setEllipseTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setEllipseTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setEllipseTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setEllipseTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setEllipseX(java.lang.Double x,
int ROIIndex,
int shapeIndex) |
void |
setEllipseY(java.lang.Double y,
int ROIIndex,
int shapeIndex) |
void |
setEncryptedConnection(boolean encryptedConnection) |
void |
setEnumerationProvider(EnumerationProvider enumProvider)
Sets the active enumeration provider.
|
void |
setExperimentDescription(java.lang.String description,
int experimentIndex) |
void |
setExperimenterAnnotationRef(java.lang.String annotation,
int experimenterIndex,
int annotationRefIndex) |
void |
setExperimenterEmail(java.lang.String email,
int experimenterIndex) |
void |
setExperimenterFirstName(java.lang.String firstName,
int experimenterIndex) |
void |
setExperimenterGroupAnnotationRef(java.lang.String annotation,
int experimenterGroupIndex,
int annotationRefIndex) |
void |
setExperimenterGroupDescription(java.lang.String description,
int groupIndex) |
void |
setExperimenterGroupExperimenterRef(java.lang.String experimenter,
int experimenterGroupIndex,
int experimenterRefIndex) |
void |
setExperimenterGroupID(java.lang.String id,
int groupIndex) |
void |
setExperimenterGroupLeader(java.lang.String leader,
int groupIndex,
int leaderIndex) |
void |
setExperimenterGroupName(java.lang.String name,
int groupIndex) |
void |
setExperimenterID(java.lang.String id,
int experimenterIndex) |
void |
setExperimenterInstitution(java.lang.String institution,
int experimenterIndex) |
void |
setExperimenterLastName(java.lang.String lastName,
int experimenterIndex) |
void |
setExperimenterMiddleName(java.lang.String middleName,
int experimenterIndex) |
void |
setExperimenterUserName(java.lang.String userName,
int experimenterIndex) |
void |
setExperimentExperimenterRef(java.lang.String experimenter,
int experimentIndex) |
void |
setExperimentID(java.lang.String id,
int experimentIndex) |
void |
setExperimentType(ome.xml.model.enums.ExperimentType type,
int experimentIndex) |
void |
setFilamentAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex) |
void |
setFilamentID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex) |
void |
setFilamentLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setFilamentManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex) |
void |
setFilamentModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex) |
void |
setFilamentPower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex) |
void |
setFilamentSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setFilamentType(ome.xml.model.enums.FilamentType type,
int instrumentIndex,
int lightSourceIndex) |
void |
setFileAnnotationAnnotationRef(java.lang.String annotation,
int fileAnnotationIndex,
int annotationRefIndex) |
void |
setFileAnnotationAnnotator(java.lang.String value,
int index) |
void |
setFileAnnotationDescription(java.lang.String description,
int fileAnnotationIndex) |
void |
setFileAnnotationID(java.lang.String id,
int fileAnnotationIndex) |
void |
setFileAnnotationNamespace(java.lang.String namespace,
int fileAnnotationIndex) |
void |
setFilterAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int filterIndex,
int annotationRefIndex) |
void |
setFilterFilterWheel(java.lang.String filterWheel,
int instrumentIndex,
int filterIndex) |
void |
setFilterID(java.lang.String id,
int instrumentIndex,
int filterIndex) |
void |
setFilterLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int filterIndex) |
void |
setFilterManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int filterIndex) |
void |
setFilterModel(java.lang.String model,
int instrumentIndex,
int filterIndex) |
void |
setFilterSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int filterIndex) |
void |
setFilterSetDichroicRef(java.lang.String dichroic,
int instrumentIndex,
int filterSetIndex) |
void |
setFilterSetEmissionFilterRef(java.lang.String emissionFilter,
int instrumentIndex,
int filterSetIndex,
int emissionFilterRefIndex) |
void |
setFilterSetExcitationFilterRef(java.lang.String excitationFilter,
int instrumentIndex,
int filterSetIndex,
int excitationFilterRefIndex) |
void |
setFilterSetID(java.lang.String id,
int instrumentIndex,
int filterSetIndex) |
void |
setFilterSetLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int filterSetIndex) |
void |
setFilterSetManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int filterSetIndex) |
void |
setFilterSetModel(java.lang.String model,
int instrumentIndex,
int filterSetIndex) |
void |
setFilterSetSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int filterSetIndex) |
void |
setFilterType(ome.xml.model.enums.FilterType type,
int instrumentIndex,
int filterIndex) |
void |
setFolderAnnotationRef(java.lang.String annotation,
int folderIndex,
int annotationRefIndex) |
void |
setFolderDescription(java.lang.String description,
int folderIndex) |
void |
setFolderFolderRef(java.lang.String folder,
int folderIndex,
int folderRefIndex) |
void |
setFolderID(java.lang.String id,
int folderIndex) |
void |
setFolderImageRef(java.lang.String image,
int folderIndex,
int imageRefIndex) |
void |
setFolderName(java.lang.String name,
int folderIndex) |
void |
setFolderROIRef(java.lang.String roi,
int folderIndex,
int ROIRefIndex) |
void |
setGenericExcitationSourceAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex) |
void |
setGenericExcitationSourceID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex) |
void |
setGenericExcitationSourceLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setGenericExcitationSourceManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex) |
void |
setGenericExcitationSourceMap(java.util.List<ome.xml.model.MapPair> map,
int instrumentIndex,
int lightSourceIndex) |
void |
setGenericExcitationSourceModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex) |
void |
setGenericExcitationSourcePower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex) |
void |
setGenericExcitationSourceSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex) |
java.lang.Long |
setGroup(java.lang.Long groupID)
Sets the id which will be used
to set the call context for all services.
|
void |
setImageAcquisitionDate(ome.xml.model.primitives.Timestamp acquiredDate,
int imageIndex) |
void |
setImageAnnotationRef(java.lang.String annotation,
int imageIndex,
int annotationRefIndex) |
void |
setImageDescription(java.lang.String description,
int imageIndex) |
void |
setImageExperimenterGroupRef(java.lang.String group,
int imageIndex) |
void |
setImageExperimenterRef(java.lang.String experimenter,
int imageIndex) |
void |
setImageExperimentRef(java.lang.String experiment,
int imageIndex) |
void |
setImageID(java.lang.String id,
int imageIndex) |
void |
setImageInstrumentRef(java.lang.String instrument,
int imageIndex) |
void |
setImageMicrobeamManipulationRef(java.lang.String microbeamManipulation,
int imageIndex,
int microbeamManipulationRefIndex) |
void |
setImageName(java.lang.String name,
int imageIndex) |
void |
setImageROIRef(java.lang.String roi,
int imageIndex,
int ROIRefIndex) |
void |
setImagingEnvironmentAirPressure(ome.units.quantity.Pressure airPressure,
int imageIndex) |
void |
setImagingEnvironmentCO2Percent(ome.xml.model.primitives.PercentFraction co2percent,
int imageIndex) |
void |
setImagingEnvironmentHumidity(ome.xml.model.primitives.PercentFraction humidity,
int imageIndex) |
void |
setImagingEnvironmentMap(java.util.List<ome.xml.model.MapPair> map,
int imageIndex) |
void |
setImagingEnvironmentTemperature(ome.units.quantity.Temperature temperature,
int imageIndex) |
void |
setInstanceProvider(InstanceProvider instanceProvider)
Sets the active instance provider.
|
void |
setInstrumentAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int annotationRefIndex) |
void |
setInstrumentID(java.lang.String id,
int instrumentIndex) |
void |
setLabelAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setLabelFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex) |
void |
setLabelFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setLabelFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setLabelFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setLabelFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setLabelID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setLabelLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setLabelStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex) |
void |
setLabelStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setLabelStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setLabelText(java.lang.String text,
int ROIIndex,
int shapeIndex) |
void |
setLabelTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setLabelTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setLabelTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setLabelTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setLabelX(java.lang.Double x,
int ROIIndex,
int shapeIndex) |
void |
setLabelY(java.lang.Double y,
int ROIIndex,
int shapeIndex) |
void |
setLaserAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex) |
void |
setLaserFrequencyMultiplication(ome.xml.model.primitives.PositiveInteger frequencyMultiplication,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserLaserMedium(ome.xml.model.enums.LaserMedium laserMedium,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserPockelCell(java.lang.Boolean pockelCell,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserPower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserPulse(ome.xml.model.enums.Pulse pulse,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserPump(java.lang.String pump,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserRepetitionRate(ome.units.quantity.Frequency repetitionRate,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserTuneable(java.lang.Boolean tuneable,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserType(ome.xml.model.enums.LaserType type,
int instrumentIndex,
int lightSourceIndex) |
void |
setLaserWavelength(ome.units.quantity.Length wavelength,
int instrumentIndex,
int lightSourceIndex) |
void |
setLightEmittingDiodeAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex) |
void |
setLightEmittingDiodeID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex) |
void |
setLightEmittingDiodeLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setLightEmittingDiodeManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex) |
void |
setLightEmittingDiodeModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex) |
void |
setLightEmittingDiodePower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex) |
void |
setLightEmittingDiodeSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex) |
void |
setLightPathAnnotationRef(java.lang.String annotation,
int imageIndex,
int channelIndex,
int annotationRefIndex) |
void |
setLightPathDichroicRef(java.lang.String dichroic,
int imageIndex,
int channelIndex) |
void |
setLightPathEmissionFilterRef(java.lang.String emissionFilter,
int imageIndex,
int channelIndex,
int emissionFilterRefIndex) |
void |
setLightPathExcitationFilterRef(java.lang.String excitationFilter,
int imageIndex,
int channelIndex,
int excitationFilterRefIndex) |
void |
setLineAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setLineFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex) |
void |
setLineFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setLineFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setLineFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setLineFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setLineID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setLineLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setLineMarkerEnd(ome.xml.model.enums.Marker markerEnd,
int ROIIndex,
int shapeIndex) |
void |
setLineMarkerStart(ome.xml.model.enums.Marker markerStart,
int ROIIndex,
int shapeIndex) |
void |
setLineStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex) |
void |
setLineStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setLineStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setLineText(java.lang.String text,
int ROIIndex,
int shapeIndex) |
void |
setLineTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setLineTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setLineTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setLineTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setLineX1(java.lang.Double x1,
int ROIIndex,
int shapeIndex) |
void |
setLineX2(java.lang.Double x2,
int ROIIndex,
int shapeIndex) |
void |
setLineY1(java.lang.Double y1,
int ROIIndex,
int shapeIndex) |
void |
setLineY2(java.lang.Double y2,
int ROIIndex,
int shapeIndex) |
void |
setListAnnotationAnnotationRef(java.lang.String annotation,
int listAnnotationIndex,
int annotationRefIndex) |
void |
setListAnnotationAnnotator(java.lang.String value,
int index) |
void |
setListAnnotationDescription(java.lang.String description,
int listAnnotationIndex) |
void |
setListAnnotationID(java.lang.String id,
int listAnnotationIndex) |
void |
setListAnnotationNamespace(java.lang.String namespace,
int listAnnotationIndex) |
void |
setLongAnnotationAnnotationRef(java.lang.String annotation,
int longAnnotationIndex,
int annotationRefIndex) |
void |
setLongAnnotationAnnotator(java.lang.String value,
int XMLAnnotationIndex) |
void |
setLongAnnotationDescription(java.lang.String description,
int longAnnotationIndex) |
void |
setLongAnnotationID(java.lang.String id,
int longAnnotationIndex) |
void |
setLongAnnotationNamespace(java.lang.String namespace,
int longAnnotationIndex) |
void |
setLongAnnotationValue(java.lang.Long value,
int longAnnotationIndex) |
void |
setMapAnnotationAnnotationRef(java.lang.String annotation,
int mapAnnotationIndex,
int annotationRefIndex) |
void |
setMapAnnotationAnnotator(java.lang.String annotator,
int mapAnnotationIndex) |
void |
setMapAnnotationDescription(java.lang.String description,
int mapAnnotationIndex) |
void |
setMapAnnotationID(java.lang.String id,
int mapAnnotationIndex) |
void |
setMapAnnotationNamespace(java.lang.String namespace,
int mapAnnotationIndex) |
void |
setMapAnnotationValue(java.util.List<ome.xml.model.MapPair> value,
int mapAnnotationIndex) |
void |
setMaskAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setMaskBinData(byte[] binData,
int roiIndex,
int shapeIndex) |
void |
setMaskBinDataBigEndian(java.lang.Boolean isBigEndian,
int roiIndex,
int shapeIndex) |
void |
setMaskBinDataCompression(ome.xml.model.enums.Compression compression,
int roiIndex,
int shapeIndex) |
void |
setMaskBinDataLength(ome.xml.model.primitives.NonNegativeLong length,
int roiIndex,
int shapeIndex) |
void |
setMaskFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex) |
void |
setMaskFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setMaskFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setMaskFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setMaskFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setMaskHeight(java.lang.Double height,
int ROIIndex,
int shapeIndex) |
void |
setMaskID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setMaskLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setMaskStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex) |
void |
setMaskStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setMaskStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setMaskText(java.lang.String description,
int ROIIndex,
int shapeIndex) |
void |
setMaskTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setMaskTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setMaskTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setMaskTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setMaskWidth(java.lang.Double width,
int ROIIndex,
int shapeIndex) |
void |
setMaskX(java.lang.Double x,
int ROIIndex,
int shapeIndex) |
void |
setMaskY(java.lang.Double y,
int ROIIndex,
int shapeIndex) |
void |
setMicrobeamManipulationDescription(java.lang.String description,
int experimentIndex,
int microbeamManipulationIndex) |
void |
setMicrobeamManipulationExperimenterRef(java.lang.String experimenter,
int experimentIndex,
int microbeamManipulationIndex) |
void |
setMicrobeamManipulationID(java.lang.String id,
int experimentIndex,
int microbeamManipulationIndex) |
void |
setMicrobeamManipulationLightSourceSettingsAttenuation(ome.xml.model.primitives.PercentFraction attenuation,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
setMicrobeamManipulationLightSourceSettingsID(java.lang.String id,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
setMicrobeamManipulationLightSourceSettingsWavelength(ome.units.quantity.Length wavelength,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex) |
void |
setMicrobeamManipulationROIRef(java.lang.String roi,
int experimentIndex,
int microbeamManipulationIndex,
int ROIRefIndex) |
void |
setMicrobeamManipulationType(ome.xml.model.enums.MicrobeamManipulationType type,
int experimentIndex,
int microbeamManipulationIndex) |
void |
setMicroscopeLotNumber(java.lang.String lotNumber,
int instrumentIndex) |
void |
setMicroscopeManufacturer(java.lang.String manufacturer,
int instrumentIndex) |
void |
setMicroscopeModel(java.lang.String model,
int instrumentIndex) |
void |
setMicroscopeSerialNumber(java.lang.String serialNumber,
int instrumentIndex) |
void |
setMicroscopeType(ome.xml.model.enums.MicroscopeType type,
int instrumentIndex) |
void |
setModelProcessors(java.util.List<ModelProcessor> modelProcessors)
Sets the current set of model processors.
|
void |
setObjectiveAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int objectiveIndex,
int annotationRefIndex) |
void |
setObjectiveCalibratedMagnification(java.lang.Double calibratedMagnification,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveCorrection(ome.xml.model.enums.Correction correction,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveID(java.lang.String id,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveImmersion(ome.xml.model.enums.Immersion immersion,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveIris(java.lang.Boolean iris,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveLensNA(java.lang.Double lensNA,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveModel(java.lang.String model,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveNominalMagnification(java.lang.Double nominalMagnification,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int objectiveIndex) |
void |
setObjectiveSettingsCorrectionCollar(java.lang.Double correctionCollar,
int imageIndex) |
void |
setObjectiveSettingsID(java.lang.String id,
int imageIndex) |
void |
setObjectiveSettingsMedium(ome.xml.model.enums.Medium medium,
int imageIndex) |
void |
setObjectiveSettingsRefractiveIndex(java.lang.Double refractiveIndex,
int imageIndex) |
void |
setObjectiveWorkingDistance(ome.units.quantity.Length workingDistance,
int instrumentIndex,
int objectiveIndex) |
void |
setPixelsBigEndian(java.lang.Boolean value,
int index) |
void |
setPixelsBinData(byte[] binData,
int imageIndex,
int binDataIndex) |
void |
setPixelsBinDataBigEndian(java.lang.Boolean bigEndian,
int imageIndex,
int binDataIndex) |
void |
setPixelsBinDataCompression(ome.xml.model.enums.Compression compression,
int imageIndex,
int binDataIndex) |
void |
setPixelsBinDataLength(ome.xml.model.primitives.NonNegativeLong length,
int imageIndex,
int binDataIndex) |
void |
setPixelsDimensionOrder(ome.xml.model.enums.DimensionOrder dimensionOrder,
int imageIndex) |
void |
setPixelsFile(long pixelsId,
java.lang.String file,
java.lang.String repo)
Sets the path, name and repo in the pixels table.
|
void |
setPixelsID(java.lang.String id,
int imageIndex) |
void |
setPixelsInterleaved(java.lang.Boolean value,
int index) |
void |
setPixelsPhysicalSizeX(ome.units.quantity.Length physicalSizeX,
int imageIndex) |
void |
setPixelsPhysicalSizeY(ome.units.quantity.Length physicalSizeY,
int imageIndex) |
void |
setPixelsPhysicalSizeZ(ome.units.quantity.Length physicalSizeZ,
int imageIndex) |
void |
setPixelsSignificantBits(ome.xml.model.primitives.PositiveInteger value,
int imageIndex) |
void |
setPixelsSizeC(ome.xml.model.primitives.PositiveInteger sizeC,
int imageIndex) |
void |
setPixelsSizeT(ome.xml.model.primitives.PositiveInteger sizeT,
int imageIndex) |
void |
setPixelsSizeX(ome.xml.model.primitives.PositiveInteger sizeX,
int imageIndex) |
void |
setPixelsSizeY(ome.xml.model.primitives.PositiveInteger sizeY,
int imageIndex) |
void |
setPixelsSizeZ(ome.xml.model.primitives.PositiveInteger sizeZ,
int imageIndex) |
void |
setPixelsTimeIncrement(ome.units.quantity.Time timeIncrement,
int imageIndex) |
void |
setPixelsType(ome.xml.model.enums.PixelType type,
int imageIndex) |
void |
setPlane(java.lang.Long pixId,
byte[] arrayBuf,
int z,
int c,
int t)
Writes a plane to the server.
|
void |
setPlaneAnnotationRef(java.lang.String annotation,
int imageIndex,
int planeIndex,
int annotationRefIndex) |
void |
setPlaneDeltaT(ome.units.quantity.Time deltaT,
int imageIndex,
int planeIndex) |
void |
setPlaneExposureTime(ome.units.quantity.Time exposureTime,
int imageIndex,
int planeIndex) |
void |
setPlaneHashSHA1(java.lang.String hashSHA1,
int imageIndex,
int planeIndex) |
void |
setPlanePositionX(ome.units.quantity.Length positionX,
int imageIndex,
int planeIndex) |
void |
setPlanePositionY(ome.units.quantity.Length positionY,
int imageIndex,
int planeIndex) |
void |
setPlanePositionZ(ome.units.quantity.Length positionZ,
int imageIndex,
int planeIndex) |
void |
setPlaneTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int imageIndex,
int planeIndex) |
void |
setPlaneTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int imageIndex,
int planeIndex) |
void |
setPlaneTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int imageIndex,
int planeIndex) |
void |
setPlateAcquisitionAnnotationRef(java.lang.String annotation,
int plateIndex,
int plateAcquisitionIndex,
int annotationRefIndex) |
void |
setPlateAcquisitionDescription(java.lang.String description,
int plateIndex,
int plateAcquisitionIndex) |
void |
setPlateAcquisitionEndTime(ome.xml.model.primitives.Timestamp endTime,
int plateIndex,
int plateAcquisitionIndex) |
void |
setPlateAcquisitionID(java.lang.String id,
int plateIndex,
int plateAcquisitionIndex) |
void |
setPlateAcquisitionMaximumFieldCount(ome.xml.model.primitives.PositiveInteger maximumFieldCount,
int plateIndex,
int plateAcquisitionIndex) |
void |
setPlateAcquisitionName(java.lang.String name,
int plateIndex,
int plateAcquisitionIndex) |
void |
setPlateAcquisitionStartTime(ome.xml.model.primitives.Timestamp startTime,
int plateIndex,
int plateAcquisitionIndex) |
void |
setPlateAcquisitionWellSampleRef(java.lang.String wellSample,
int plateIndex,
int plateAcquisitionIndex,
int wellSampleRefIndex) |
void |
setPlateAnnotationRef(java.lang.String annotation,
int plateIndex,
int annotationRefIndex) |
void |
setPlateColumnNamingConvention(ome.xml.model.enums.NamingConvention columnNamingConvention,
int plateIndex) |
void |
setPlateColumns(ome.xml.model.primitives.PositiveInteger columns,
int plateIndex) |
void |
setPlateDescription(java.lang.String description,
int plateIndex) |
void |
setPlateExternalIdentifier(java.lang.String externalIdentifier,
int plateIndex) |
void |
setPlateFieldIndex(ome.xml.model.primitives.NonNegativeInteger fieldIndex,
int plateIndex) |
void |
setPlateID(java.lang.String id,
int plateIndex) |
void |
setPlateName(java.lang.String name,
int plateIndex) |
void |
setPlateRowNamingConvention(ome.xml.model.enums.NamingConvention rowNamingConvention,
int plateIndex) |
void |
setPlateRows(ome.xml.model.primitives.PositiveInteger rows,
int plateIndex) |
void |
setPlateStatus(java.lang.String status,
int plateIndex) |
void |
setPlateWellOriginX(ome.units.quantity.Length wellOriginX,
int plateIndex) |
void |
setPlateWellOriginY(ome.units.quantity.Length wellOriginY,
int plateIndex) |
void |
setPointAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setPointFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex) |
void |
setPointFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setPointFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setPointFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setPointFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setPointID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setPointLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setPointStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex) |
void |
setPointStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setPointStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setPointText(java.lang.String text,
int ROIIndex,
int shapeIndex) |
void |
setPointTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setPointTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setPointTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setPointTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setPointX(java.lang.Double x,
int ROIIndex,
int shapeIndex) |
void |
setPointY(java.lang.Double y,
int ROIIndex,
int shapeIndex) |
void |
setPolygonAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setPolygonFillColor(ome.xml.model.primitives.Color fillColor,
int ROIIndex,
int shapeIndex) |
void |
setPolygonFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setPolygonFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setPolygonFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setPolygonFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setPolygonID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setPolygonLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setPolygonPoints(java.lang.String points,
int ROIIndex,
int shapeIndex) |
void |
setPolygonStrokeColor(ome.xml.model.primitives.Color strokeColor,
int ROIIndex,
int shapeIndex) |
void |
setPolygonStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setPolygonStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setPolygonText(java.lang.String text,
int ROIIndex,
int shapeIndex) |
void |
setPolygonTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setPolygonTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setPolygonTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setPolygonTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setPolylineAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setPolylineFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex) |
void |
setPolylineFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setPolylineFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setPolylineFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setPolylineFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setPolylineID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setPolylineLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setPolylineMarkerEnd(ome.xml.model.enums.Marker markerEnd,
int ROIIndex,
int shapeIndex) |
void |
setPolylineMarkerStart(ome.xml.model.enums.Marker markerStart,
int ROIIndex,
int shapeIndex) |
void |
setPolylinePoints(java.lang.String points,
int ROIIndex,
int shapeIndex) |
void |
setPolylineStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex) |
void |
setPolylineStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setPolylineStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setPolylineText(java.lang.String text,
int ROIIndex,
int shapeIndex) |
void |
setPolylineTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setPolylineTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setPolylineTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setPolylineTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setProjectAnnotationRef(java.lang.String annotation,
int projectIndex,
int annotationRefIndex) |
void |
setProjectDatasetRef(java.lang.String dataset,
int projectIndex,
int datasetRefIndex) |
void |
setProjectDescription(java.lang.String description,
int projectIndex) |
void |
setProjectExperimenterGroupRef(java.lang.String group,
int projectIndex) |
void |
setProjectExperimenterRef(java.lang.String experimenter,
int projectIndex) |
void |
setProjectID(java.lang.String id,
int projectIndex) |
void |
setProjectName(java.lang.String name,
int projectIndex) |
void |
setReader(IFormatReader reader)
Sets the Bio-Formats reader that will be used to populate the container
store.
|
void |
setReagentAnnotationRef(java.lang.String annotation,
int screenIndex,
int reagentIndex,
int annotationRefIndex) |
void |
setReagentDescription(java.lang.String description,
int screenIndex,
int reagentIndex) |
void |
setReagentID(java.lang.String id,
int screenIndex,
int reagentIndex) |
void |
setReagentName(java.lang.String name,
int screenIndex,
int reagentIndex) |
void |
setReagentReagentIdentifier(java.lang.String reagentIdentifier,
int screenIndex,
int reagentIndex) |
void |
setRectangleAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex) |
void |
setRectangleFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex) |
void |
setRectangleFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex) |
void |
setRectangleFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex) |
void |
setRectangleFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex) |
void |
setRectangleFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex) |
void |
setRectangleHeight(java.lang.Double height,
int ROIIndex,
int shapeIndex) |
void |
setRectangleID(java.lang.String id,
int ROIIndex,
int shapeIndex) |
void |
setRectangleLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex) |
void |
setRectangleStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex) |
void |
setRectangleStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex) |
void |
setRectangleStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex) |
void |
setRectangleText(java.lang.String description,
int ROIIndex,
int shapeIndex) |
void |
setRectangleTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex) |
void |
setRectangleTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex) |
void |
setRectangleTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex) |
void |
setRectangleTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex) |
void |
setRectangleWidth(java.lang.Double width,
int ROIIndex,
int shapeIndex) |
void |
setRectangleX(java.lang.Double x,
int ROIIndex,
int shapeIndex) |
void |
setRectangleY(java.lang.Double y,
int ROIIndex,
int shapeIndex) |
void |
setReferenceStringCache(java.util.Map<java.lang.String,java.lang.String[]> referenceStringCache)
Sets the string based reference cache for this container store.
|
void |
setRightsRightsHeld(java.lang.String value) |
void |
setRightsRightsHolder(java.lang.String value) |
void |
setROIAnnotationRef(java.lang.String annotation,
int ROIIndex,
int annotationRefIndex) |
void |
setROIDescription(java.lang.String description,
int ROIIndex) |
void |
setROIID(java.lang.String id,
int ROIIndex) |
void |
setROIName(java.lang.String name,
int ROIIndex) |
void |
setRoot(ome.xml.meta.MetadataRoot root) |
void |
setScreenAnnotationRef(java.lang.String annotation,
int screenIndex,
int annotationRefIndex) |
void |
setScreenDescription(java.lang.String description,
int screenIndex) |
void |
setScreenID(java.lang.String id,
int screenIndex) |
void |
setScreenName(java.lang.String name,
int screenIndex) |
void |
setScreenPlateRef(java.lang.String plate,
int screenIndex,
int plateRefIndex) |
void |
setScreenProtocolDescription(java.lang.String protocolDescription,
int screenIndex) |
void |
setScreenProtocolIdentifier(java.lang.String protocolIdentifier,
int screenIndex) |
void |
setScreenReagentSetDescription(java.lang.String reagentSetDescription,
int screenIndex) |
void |
setScreenReagentSetIdentifier(java.lang.String reagentSetIdentifier,
int screenIndex) |
void |
setScreenType(java.lang.String type,
int screenIndex) |
void |
setStageLabelName(java.lang.String name,
int imageIndex) |
void |
setStageLabelX(ome.units.quantity.Length x,
int imageIndex) |
void |
setStageLabelY(ome.units.quantity.Length y,
int imageIndex) |
void |
setStageLabelZ(ome.units.quantity.Length z,
int imageIndex) |
void |
setTagAnnotationAnnotationRef(java.lang.String annotation,
int tagAnnotationIndex,
int annotationRefIndex) |
void |
setTagAnnotationAnnotator(java.lang.String value,
int index) |
void |
setTagAnnotationDescription(java.lang.String description,
int tagAnnotationIndex) |
void |
setTagAnnotationID(java.lang.String id,
int tagAnnotationIndex) |
void |
setTagAnnotationNamespace(java.lang.String namespace,
int tagAnnotationIndex) |
void |
setTagAnnotationValue(java.lang.String value,
int tagAnnotationIndex) |
void |
setTermAnnotationAnnotationRef(java.lang.String annotation,
int termAnnotationIndex,
int annotationRefIndex) |
void |
setTermAnnotationAnnotator(java.lang.String value,
int index) |
void |
setTermAnnotationDescription(java.lang.String description,
int termAnnotationIndex) |
void |
setTermAnnotationID(java.lang.String id,
int termAnnotationIndex) |
void |
setTermAnnotationNamespace(java.lang.String namespace,
int termAnnotationIndex) |
void |
setTermAnnotationValue(java.lang.String value,
int termAnnotationIndex) |
void |
setTiffDataFirstC(ome.xml.model.primitives.NonNegativeInteger firstC,
int imageIndex,
int tiffDataIndex) |
void |
setTiffDataFirstT(ome.xml.model.primitives.NonNegativeInteger firstT,
int imageIndex,
int tiffDataIndex) |
void |
setTiffDataFirstZ(ome.xml.model.primitives.NonNegativeInteger firstZ,
int imageIndex,
int tiffDataIndex) |
void |
setTiffDataIFD(ome.xml.model.primitives.NonNegativeInteger ifd,
int imageIndex,
int tiffDataIndex) |
void |
setTiffDataPlaneCount(ome.xml.model.primitives.NonNegativeInteger planeCount,
int imageIndex,
int tiffDataIndex) |
void |
setTile(java.lang.Long pixId,
byte[] arrayBuf,
int z,
int c,
int t,
int x,
int y,
int w,
int h)
Writes a tile of pixels to the server.
|
void |
setTimestampAnnotationAnnotationRef(java.lang.String annotation,
int timestampAnnotationIndex,
int annotationRefIndex) |
void |
setTimestampAnnotationAnnotator(java.lang.String value,
int index) |
void |
setTimestampAnnotationDescription(java.lang.String description,
int timestampAnnotationIndex) |
void |
setTimestampAnnotationID(java.lang.String id,
int timestampAnnotationIndex) |
void |
setTimestampAnnotationNamespace(java.lang.String namespace,
int timestampAnnotationIndex) |
void |
setTimestampAnnotationValue(ome.xml.model.primitives.Timestamp value,
int timestampAnnotationIndex) |
void |
setTransmittanceRangeCutIn(ome.units.quantity.Length cutIn,
int instrumentIndex,
int filterIndex) |
void |
setTransmittanceRangeCutInTolerance(ome.units.quantity.Length cutInTolerance,
int instrumentIndex,
int filterIndex) |
void |
setTransmittanceRangeCutOut(ome.units.quantity.Length cutOut,
int instrumentIndex,
int filterIndex) |
void |
setTransmittanceRangeCutOutTolerance(ome.units.quantity.Length cutOutTolerance,
int instrumentIndex,
int filterIndex) |
void |
setTransmittanceRangeTransmittance(ome.xml.model.primitives.PercentFraction transmittance,
int instrumentIndex,
int filterIndex) |
void |
setUserSpecifiedAnnotations(java.util.List<omero.model.Annotation> annotations)
Sets the user specified image annotations.
|
void |
setUserSpecifiedDescription(java.lang.String description)
Sets the user specified image/plate description.
|
void |
setUserSpecifiedName(java.lang.String name)
Sets the user specified image/plate name.
|
void |
setUserSpecifiedPhysicalPixelSizes(java.lang.Double physicalSizeX,
java.lang.Double physicalSizeY,
java.lang.Double physicalSizeZ)
Sets the user specified physical pixel sizes.
|
void |
setUserSpecifiedTarget(omero.model.IObject target)
Sets the user-specified linkage target (usually a Dataset for Images)
and a Screen for Plates).
|
void |
setUUID(java.lang.String uuid) |
void |
setUUIDFileName(java.lang.String fileName,
int imageIndex,
int tiffDataIndex) |
void |
setUUIDValue(java.lang.String fileName,
int imageIndex,
int tiffDataIndex) |
void |
setWellAnnotationRef(java.lang.String annotation,
int plateIndex,
int wellIndex,
int annotationRefIndex) |
void |
setWellColor(ome.xml.model.primitives.Color color,
int plateIndex,
int wellIndex) |
void |
setWellColumn(ome.xml.model.primitives.NonNegativeInteger column,
int plateIndex,
int wellIndex) |
void |
setWellExternalDescription(java.lang.String externalDescription,
int plateIndex,
int wellIndex) |
void |
setWellExternalIdentifier(java.lang.String externalIdentifier,
int plateIndex,
int wellIndex) |
void |
setWellID(java.lang.String id,
int plateIndex,
int wellIndex) |
void |
setWellReagentRef(java.lang.String reagent,
int plateIndex,
int wellIndex) |
void |
setWellRow(ome.xml.model.primitives.NonNegativeInteger row,
int plateIndex,
int wellIndex) |
void |
setWellSampleID(java.lang.String id,
int plateIndex,
int wellIndex,
int wellSampleIndex) |
void |
setWellSampleImageRef(java.lang.String image,
int plateIndex,
int wellIndex,
int wellSampleIndex) |
void |
setWellSampleIndex(ome.xml.model.primitives.NonNegativeInteger index,
int plateIndex,
int wellIndex,
int wellSampleIndex) |
void |
setWellSamplePositionX(ome.units.quantity.Length positionX,
int plateIndex,
int wellIndex,
int wellSampleIndex) |
void |
setWellSamplePositionY(ome.units.quantity.Length positionY,
int plateIndex,
int wellIndex,
int wellSampleIndex) |
void |
setWellSampleTimepoint(ome.xml.model.primitives.Timestamp timepoint,
int plateIndex,
int wellIndex,
int wellSampleIndex) |
void |
setWellType(java.lang.String type,
int plateIndex,
int wellIndex) |
void |
setXMLAnnotationAnnotationRef(java.lang.String annotation,
int XMLAnnotationIndex,
int annotationRefIndex) |
void |
setXMLAnnotationAnnotator(java.lang.String value,
int index) |
void |
setXMLAnnotationDescription(java.lang.String description,
int XMLAnnotationIndex) |
void |
setXMLAnnotationID(java.lang.String id,
int XMLAnnotationIndex) |
void |
setXMLAnnotationNamespace(java.lang.String namespace,
int XMLAnnotationIndex) |
void |
setXMLAnnotationValue(java.lang.String value,
int XMLAnnotationIndex) |
omero.model.AffineTransform |
toRType(ome.xml.model.AffineTransform schemaTransform)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RBool |
toRType(java.lang.Boolean value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RInt |
toRType(ome.xml.model.primitives.Color value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RDouble |
toRType(java.lang.Double value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RDouble |
toRType(java.lang.Float value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RInt |
toRType(java.lang.Integer value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RLong |
toRType(java.lang.Long value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RString |
toRType(ome.xml.model.enums.NamingConvention value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RInt |
toRType(ome.xml.model.primitives.NonNegativeInteger value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RLong |
toRType(ome.xml.model.primitives.NonNegativeLong value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RDouble |
toRType(ome.xml.model.primitives.PercentFraction value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RDouble |
toRType(ome.xml.model.primitives.PositiveFloat value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RString |
toRType(java.lang.String value)
Transforms a Java type into the corresponding OMERO RType.
|
omero.RTime |
toRType(ome.xml.model.primitives.Timestamp value)
Transforms a Java type into the corresponding OMERO RType.
|
void |
updateFileSize(omero.model.OriginalFile file,
long size) |
void |
updatePixels(java.util.List<omero.model.Pixels> pixelsList)
Updates a list of Pixels.
|
public static final java.lang.String OMERO_EMISSION_FILTER_SUFFIX
setFilterSetEmissionFilterRef(String, int, int, int)
for an explanation of its usage.public static final java.lang.String OMERO_EXCITATION_FILTER_SUFFIX
setFilterSetExcitationFilterRef(String, int, int, int)
for an explanation of its usage.public ClientKeepAlive getKeepAlive()
public void logVersionInfo(java.lang.String clientVersion)
throws omero.ServerError
omero.ServerErrorpublic int getDefaultBatchSize()
DEFAULTBATCHSIZE
if none is set.public int getDefaultBlockSize()
DEFAULTBLOCKSIZE
if none is set.public omero.api.IQueryPrx getIQuery()
public void setEncryptedConnection(boolean encryptedConnection)
public boolean isEncryptedConnection()
public java.lang.Long setGroup(java.lang.Long groupID)
groupID - the group ID to use for call contextsnullpublic void initialize(omero.api.ServiceFactoryPrx serviceFactory)
throws omero.ServerError
closeServices().serviceFactory - The factory. Mustn't be null.omero.ServerError - if the services could not be initializedpublic void initialize(client c) throws omero.ServerError
closeServices().c - The client. Mustn't be null.omero.ServerError - if the services could not be initializedpublic void initialize(java.lang.String username,
java.lang.String password,
java.lang.String server,
int port)
throws Glacier2.CannotCreateSessionException,
Glacier2.PermissionDeniedException,
omero.ServerError
logout()username - User's omename.password - User's password.server - Server hostname.port - Server port.Glacier2.CannotCreateSessionException - If there is a session error when
creating the OMERO Blitz client object.Glacier2.PermissionDeniedException - If there is a problem logging the user
in.omero.ServerError - If there is a critical error communicating with the
server.public void initialize(java.lang.String username,
java.lang.String password,
java.lang.String server,
int port,
boolean isSecure)
throws Glacier2.CannotCreateSessionException,
Glacier2.PermissionDeniedException,
omero.ServerError
logout()username - User's omename.password - User's password.server - Server hostname.port - Server port.isSecure - is this session secureGlacier2.CannotCreateSessionException - If there is a session error when
creating the OMERO Blitz client object.Glacier2.PermissionDeniedException - If there is a problem logging the user
in.omero.ServerError - If there is a critical error communicating with the
server.public void initialize(java.lang.String username,
java.lang.String password,
java.lang.String server,
int port,
java.lang.Long group,
boolean isSecure)
throws Glacier2.CannotCreateSessionException,
Glacier2.PermissionDeniedException,
omero.ServerError
logout()username - User's omename.password - User's password.server - Server hostname.port - Server port.group - User's current group.isSecure - is this session secureGlacier2.CannotCreateSessionException - If there is a session error when
creating the OMERO Blitz client object.Glacier2.PermissionDeniedException - If there is a problem logging the user
in.omero.ServerError - If there is a critical error communicating with the
server.public void initialize(java.lang.String server,
int port,
java.lang.String sessionKey)
throws Glacier2.CannotCreateSessionException,
Glacier2.PermissionDeniedException,
omero.ServerError
logout()server - Server hostname.port - Server port.sessionKey - Bind session key.Glacier2.CannotCreateSessionException - if a session could not be createdGlacier2.PermissionDeniedException - if the services may not be initializedomero.ServerError - if the services could not be initializedpublic void initialize(java.lang.String server,
int port,
java.lang.String sessionKey,
boolean isSecure)
throws Glacier2.CannotCreateSessionException,
Glacier2.PermissionDeniedException,
omero.ServerError
logout()server - Server hostname.port - Server port.sessionKey - Bind session key.isSecure - if a secure session should be createdGlacier2.CannotCreateSessionException - if a session could not be createdGlacier2.PermissionDeniedException - if the services may not be initializedomero.ServerError - if the services could not be initializedpublic omero.api.ServiceFactoryPrx getServiceFactory()
public void ping()
public void setCurrentLogFile(java.lang.String logFilename,
java.lang.String token)
public void updateFileSize(omero.model.OriginalFile file,
long size)
throws omero.ServerError
omero.ServerErrorpublic void setEnumerationProvider(EnumerationProvider enumProvider)
enumProvider - Enumeration provider to use.public EnumerationProvider getEnumerationProvider()
public void setInstanceProvider(InstanceProvider instanceProvider)
instanceProvider - the instance provider to usepublic InstanceProvider getInstanceProvider()
public omero.RInt toRType(java.lang.Integer value)
value - Java concrete type value.null if value is
null.public omero.RInt toRType(ome.xml.model.primitives.NonNegativeInteger value)
value - Java concrete type value.null if value is
null.public omero.RLong toRType(ome.xml.model.primitives.NonNegativeLong value)
value - Java concrete type value.null if value is
null.public omero.RDouble toRType(ome.xml.model.primitives.PositiveFloat value)
value - Java concrete type value.null if value is
null.public omero.RDouble toRType(ome.xml.model.primitives.PercentFraction value)
value - Java concrete type value.null if value is
null.public omero.RLong toRType(java.lang.Long value)
value - Java concrete type value.null if value is
null.public omero.RString toRType(java.lang.String value)
value - Java concrete type value.null if value is
null.public omero.RBool toRType(java.lang.Boolean value)
value - Java concrete type value.null if value is
null.public omero.RDouble toRType(java.lang.Double value)
value - Java concrete type value.null if value is
null.public omero.RDouble toRType(java.lang.Float value)
value - Java concrete type value.null if value is
null.public omero.RTime toRType(ome.xml.model.primitives.Timestamp value)
value - Java concrete type value.null if value is
null.public omero.RString toRType(ome.xml.model.enums.NamingConvention value)
value - Java concrete type value.null if value is
null.public omero.model.AffineTransform toRType(ome.xml.model.AffineTransform schemaTransform)
schemaTransform - Java concrete type value.null if value is
null.public omero.RInt toRType(ome.xml.model.primitives.Color value)
value - Java concrete type value.null if value is
null.public void closeServices()
logout() when initialized
via an client or a ServiceFactoryPrx instance.initialize(client),
initialize(ServiceFactoryPrx)public void logout()
client or a ServiceFactoryPrx instance. * @see
#initialize(client)initialize(ServiceFactoryPrx),
closeServices()public void prepare(java.util.Map<java.lang.Integer,omero.model.Image> existingMetadata)
prepare() is only valid for
a SINGLE importImage() execution. Following
importImage() the existing metadata map will be reset
regardless of success or failure.existingMetadata - Map of imageIndex or series vs. populated Image
source graph with the fetched objects defined above.public void createRoot()
createRoot in interface ome.xml.meta.MetadataStorepublic ome.xml.meta.MetadataRoot getRoot()
getRoot in interface ome.xml.meta.MetadataStorepublic IFormatReader getReader()
IObjectContainerStoregetReader in interface IObjectContainerStorepublic void setReader(IFormatReader reader)
IObjectContainerStoresetReader in interface IObjectContainerStorereader - Bio-Formats reader.public java.util.List<omero.model.Annotation> getUserSpecifiedAnnotations()
IObjectContainerStoregetUserSpecifiedAnnotations in interface IObjectContainerStorepublic void setUserSpecifiedAnnotations(java.util.List<omero.model.Annotation> annotations)
IObjectContainerStoresetUserSpecifiedAnnotations in interface IObjectContainerStoreannotations - user specified annotationspublic java.lang.String getUserSpecifiedName()
IObjectContainerStoregetUserSpecifiedName in interface IObjectContainerStorepublic java.lang.String getUserSpecifiedImageName()
public void setUserSpecifiedName(java.lang.String name)
IObjectContainerStoresetUserSpecifiedName in interface IObjectContainerStorename - user specified image/plate namepublic java.lang.String getUserSpecifiedDescription()
IObjectContainerStoregetUserSpecifiedDescription in interface IObjectContainerStorepublic void setUserSpecifiedDescription(java.lang.String description)
IObjectContainerStoresetUserSpecifiedDescription in interface IObjectContainerStoredescription - user-specified image/plate descriptionpublic omero.model.IObject getUserSpecifiedTarget()
IObjectContainerStoregetUserSpecifiedTarget in interface IObjectContainerStorepublic void setUserSpecifiedTarget(omero.model.IObject target)
IObjectContainerStoresetUserSpecifiedTarget in interface IObjectContainerStoretarget - user-specified linkage targetpublic java.lang.Double[] getUserSpecifiedPhysicalPixelSizes()
IObjectContainerStoregetUserSpecifiedPhysicalPixelSizes in interface IObjectContainerStorenull
for any one index states the user has not made a choice for the size
of that particular dimension.public void setUserSpecifiedPhysicalPixelSizes(java.lang.Double physicalSizeX,
java.lang.Double physicalSizeY,
java.lang.Double physicalSizeZ)
IObjectContainerStorenull states the original file physical size for that
dimension should be used.setUserSpecifiedPhysicalPixelSizes in interface IObjectContainerStorephysicalSizeX - Physical pixel size width.physicalSizeY - Physical pixel height.physicalSizeZ - Physical pixel depth.public java.util.List<ModelProcessor> getModelProcessors()
public void setModelProcessors(java.util.List<ModelProcessor> modelProcessors)
modelProcessors - List of model processors to use.public void removeModelProcessor(ModelProcessor processor)
processor - Model processor to remove.public boolean addModelProcessor(ModelProcessor processor)
processor - Model processor to add.true as specified by Collection.add(Object)public java.util.Map<LSID,omero.metadatastore.IObjectContainer> getContainerCache()
IObjectContainerStoregetContainerCache in interface IObjectContainerStorepublic java.util.Map<LSID,java.util.List<LSID>> getReferenceCache()
IObjectContainerStoregetReferenceCache in interface IObjectContainerStorepublic java.util.Map<java.lang.Class<? extends omero.model.IObject>,java.util.Map<java.lang.String,omero.metadatastore.IObjectContainer>> getAuthoritativeContainerCache()
IObjectContainerStoregetAuthoritativeContainerCache in interface IObjectContainerStorepublic void addReference(LSID source, LSID target)
addReference in interface IObjectContainerStoresource - Source LSID to add.target - Target LSID to add.public java.util.Map<java.lang.String,java.lang.String[]> getReferenceStringCache()
IObjectContainerStoregetReferenceStringCache in interface IObjectContainerStorepublic void setReferenceStringCache(java.util.Map<java.lang.String,java.lang.String[]> referenceStringCache)
IObjectContainerStoresetReferenceStringCache in interface IObjectContainerStorereferenceStringCache - String based reference cache to use.public omero.model.IObject getSourceObject(LSID LSID)
IObjectContainerStoregetSourceObject in interface IObjectContainerStoreLSID - LSID to retrieve a source object for.public <T extends omero.model.IObject> java.util.List<T> getSourceObjects(java.lang.Class<T> klass)
IObjectContainerStoregetSourceObjects in interface IObjectContainerStoreklass - Class to retrieve source objects for.public boolean hasReference(LSID source, LSID target)
IObjectContainerStorehasReference in interface IObjectContainerStoresource - LSID of the source object.target - LSID of the target object.true if a reference exists, false
otherwise.public void setPixelsFile(long pixelsId,
java.lang.String file,
java.lang.String repo)
throws omero.ServerError
pixelsId - the ID of the Pixels objectfile - the file's filename, with path in the repositoryrepo - the file's repository's UUIDomero.ServerError - in the event of a server errorpublic void setCurrentGroup(long groupID)
throws omero.ServerError
groupID - The id of the group.omero.ServerError - if the group could not be set or the services initialized accordinglypublic java.util.Map<java.lang.Long,java.lang.String> mapUserGroups()
throws omero.ServerError
omero.ServerError - if the groups could not be mappedpublic java.lang.String getDefaultGroupName()
throws omero.ServerError
omero.ServerError - if the default group could not be retrieved@Deprecated
public int getDefaultGroupLevel()
throws omero.ServerError
omero.ServerError - if the default group could not be retrievedpublic long getRepositorySpace()
public void postProcess()
saveToDB(FilesetJobLink).public java.util.Map<java.lang.String,java.util.List<omero.model.IObject>> saveToDB(omero.model.FilesetJobLink link)
link - the link to save to the databasepublic java.util.List<omero.grid.InteractiveProcessorPrx> launchProcessing()
public <T extends omero.model.IObject> T getTarget(java.lang.Class<T> klass,
long id)
T - the kind of model object to retrieveklass - the class of the model objectid - the ID of the model objectpublic omero.model.Project getProject(long projectId)
projectId - public omero.model.Dataset addDataset(java.lang.String datasetName,
java.lang.String datasetDescription,
omero.model.Project project)
datasetName - the name of the datasetdatasetDescription - the description of the datasetproject - the project in which the dataset is (if any)public long getExperimenterID()
public java.lang.String getConfigValue(java.lang.String key)
IConfig service.key - Key for the string encoded value.public java.util.List<omero.model.Screen> getScreens()
public java.util.List<omero.model.Project> getProjects()
public java.util.List<omero.model.Dataset> getDatasets(omero.model.Project p)
p - the project whose datasets to get (null for orphaned datasets)public java.util.List<omero.model.Dataset> getDatasetsWithoutProjects()
public omero.model.Project addProject(java.lang.String projectName,
java.lang.String projectDescription)
projectName - the name of the projectprojectDescription - the description of the projectpublic omero.model.Screen addScreen(java.lang.String screenName,
java.lang.String screenDescription)
screenName - the name of the screenscreenDescription - the description of the screenpublic void preparePixelsStore(java.util.List<java.lang.Long> pixelsIds)
pixelsIds - List of Pixels IDs we'll be populating.public void finalizePixelStore()
throws omero.ServerError
omero.ServerError - if the pixel store could not be finalized or a new one createdpublic int[] getTileSize(java.lang.Long pixId)
throws omero.ServerError
pixId - Pixels set to write to.omero.ServerError - If there is an error writing this tile to the
server.public void setTile(java.lang.Long pixId,
byte[] arrayBuf,
int z,
int c,
int t,
int x,
int y,
int w,
int h)
throws omero.ServerError
pixId - Pixels set to write to.arrayBuf - Byte array containing all pixels for this plane.z - Z offset within the Pixels set.c - Channel offset within the Pixels set.t - Timepoint offset within the Pixels set.x - X offset of the tile.y - Y offset of the tile.w - Width of the tile.h - Height of the tile.omero.ServerError - If there is an error writing this tile to the
server.setPlane(Long, byte[], int, int, int)public void setPlane(java.lang.Long pixId,
byte[] arrayBuf,
int z,
int c,
int t)
throws omero.ServerError
pixId - Pixels set to write to.arrayBuf - Byte array containing all pixels for this plane.z - Z offset within the Pixels set.c - Channel offset within the Pixels set.t - Timepoint offset within the Pixels set.omero.ServerError - If there is an error writing this plane to the
server.public void setChannelGlobalMinMax(int channel,
double minimum,
double maximum,
int series)
setChannelGlobalMinMax in interface IMinMaxStorepublic void updatePixels(java.util.List<omero.model.Pixels> pixelsList)
pixelsList - List of Pixels to update.public void populateMinMax()
public void resetDefaultsAndGenerateThumbnails(java.util.List<java.lang.Long> plateIds,
java.util.List<java.lang.Long> pixelsIds)
plateIds - Set of Plate IDs to reset defaults and thumbnails for.pixelsIds - Set of Pixels IDs to reset defaults and thumbnails for.public omero.metadatastore.IObjectContainer getIObjectContainer(java.lang.Class<? extends omero.model.IObject> klass,
java.util.LinkedHashMap<Index,java.lang.Integer> indexes)
IObjectContainerStoregetIObjectContainer in interface IObjectContainerStoreklass - Class to retrieve a container for.indexes - Indexes into the OME-XML data model.public void removeIObjectContainer(LSID lsid)
IObjectContainerStoreremoveIObjectContainer in interface IObjectContainerStorelsid - LSID of the container to remove.public java.util.List<omero.metadatastore.IObjectContainer> getIObjectContainers(java.lang.Class<? extends omero.model.IObject> klass)
IObjectContainerStoregetIObjectContainers in interface IObjectContainerStoreklass - Class to retrieve containers for.public int countCachedContainers(java.lang.Class<? extends omero.model.IObject> klass,
int... indexes)
IObjectContainerStorecountCachedContainers in interface IObjectContainerStoreklass - Class to count containers of.indexes - Indexes to use in the container count. For example, if
klass is Image and indexes is
int[] { 0 }; only containers that have an LSID of type
Image and a first index of 0 will be counted.public int countCachedReferences(java.lang.Class<? extends omero.model.IObject> source,
java.lang.Class<? extends omero.model.IObject> target)
IObjectContainerStorecountCachedReferences in interface IObjectContainerStoresource - Class of the source object. If null it is
treated as a wild card, all references whose target match
target will be counted.target - Class of the target object. If null it is
treated as a wild card, all references whose source match
source will be counted.public void setArcID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex)
setArcID in interface ome.xml.meta.MetadataStorepublic void setArcLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex)
setArcLotNumber in interface ome.xml.meta.MetadataStorepublic void setArcManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex)
setArcManufacturer in interface ome.xml.meta.MetadataStorepublic void setArcModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex)
setArcModel in interface ome.xml.meta.MetadataStorepublic void setArcPower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex)
setArcPower in interface ome.xml.meta.MetadataStorepublic void setArcSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex)
setArcSerialNumber in interface ome.xml.meta.MetadataStorepublic void setArcType(ome.xml.model.enums.ArcType type,
int instrumentIndex,
int lightSourceIndex)
setArcType in interface ome.xml.meta.MetadataStorepublic void setArcAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex)
setArcAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setBooleanAnnotationID(java.lang.String id,
int booleanAnnotationIndex)
setBooleanAnnotationID in interface ome.xml.meta.MetadataStorepublic void setBooleanAnnotationNamespace(java.lang.String namespace,
int booleanAnnotationIndex)
setBooleanAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setBooleanAnnotationValue(java.lang.Boolean value,
int booleanAnnotationIndex)
setBooleanAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setBinaryOnlyUUID(java.lang.String uuid)
setBinaryOnlyUUID in interface ome.xml.meta.MetadataStorepublic void setBinaryOnlyMetadataFile(java.lang.String metadataFile)
setBinaryOnlyMetadataFile in interface ome.xml.meta.MetadataStorepublic omero.model.Channel getChannel(int imageIndex,
int channelIndex)
public void setChannelID(java.lang.String id,
int imageIndex,
int channelIndex)
setChannelID in interface ome.xml.meta.MetadataStorepublic void setChannelAcquisitionMode(ome.xml.model.enums.AcquisitionMode acquisitionMode,
int imageIndex,
int channelIndex)
setChannelAcquisitionMode in interface ome.xml.meta.MetadataStorepublic void setChannelColor(ome.xml.model.primitives.Color color,
int imageIndex,
int channelIndex)
setChannelColor in interface ome.xml.meta.MetadataStorepublic void setChannelContrastMethod(ome.xml.model.enums.ContrastMethod contrastMethod,
int imageIndex,
int channelIndex)
setChannelContrastMethod in interface ome.xml.meta.MetadataStorepublic void setChannelEmissionWavelength(ome.units.quantity.Length emissionWavelength,
int imageIndex,
int channelIndex)
setChannelEmissionWavelength in interface ome.xml.meta.MetadataStorepublic void setChannelExcitationWavelength(ome.units.quantity.Length excitationWavelength,
int imageIndex,
int channelIndex)
setChannelExcitationWavelength in interface ome.xml.meta.MetadataStoreMetadataStore.setChannelExcitationWavelength(Length, int, int)public void setChannelFilterSetRef(java.lang.String filterSet,
int imageIndex,
int channelIndex)
setChannelFilterSetRef in interface ome.xml.meta.MetadataStorepublic void setChannelFluor(java.lang.String fluor,
int imageIndex,
int channelIndex)
setChannelFluor in interface ome.xml.meta.MetadataStorepublic void setChannelIlluminationType(ome.xml.model.enums.IlluminationType illuminationType,
int imageIndex,
int channelIndex)
setChannelIlluminationType in interface ome.xml.meta.MetadataStorepublic void setChannelNDFilter(java.lang.Double ndfilter,
int imageIndex,
int channelIndex)
setChannelNDFilter in interface ome.xml.meta.MetadataStorepublic void setChannelName(java.lang.String name,
int imageIndex,
int channelIndex)
setChannelName in interface ome.xml.meta.MetadataStorepublic void setChannelPinholeSize(ome.units.quantity.Length pinholeSize,
int imageIndex,
int channelIndex)
setChannelPinholeSize in interface ome.xml.meta.MetadataStorepublic void setChannelPockelCellSetting(java.lang.Integer pockelCellSetting,
int imageIndex,
int channelIndex)
setChannelPockelCellSetting in interface ome.xml.meta.MetadataStorepublic void setChannelSamplesPerPixel(ome.xml.model.primitives.PositiveInteger samplesPerPixel,
int imageIndex,
int channelIndex)
setChannelSamplesPerPixel in interface ome.xml.meta.MetadataStorepublic void setChannelAnnotationRef(java.lang.String annotation,
int imageIndex,
int channelIndex,
int annotationRefIndex)
setChannelAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setChannelLightSourceSettingsID(java.lang.String id,
int imageIndex,
int channelIndex)
setChannelLightSourceSettingsID in interface ome.xml.meta.MetadataStorepublic void setChannelLightSourceSettingsAttenuation(ome.xml.model.primitives.PercentFraction attenuation,
int imageIndex,
int channelIndex)
setChannelLightSourceSettingsAttenuation in interface ome.xml.meta.MetadataStorepublic void setChannelLightSourceSettingsWavelength(ome.units.quantity.Length wavelength,
int imageIndex,
int channelIndex)
setChannelLightSourceSettingsWavelength in interface ome.xml.meta.MetadataStorepublic void setDatasetID(java.lang.String id,
int datasetIndex)
setDatasetID in interface ome.xml.meta.MetadataStorepublic void setDatasetAnnotationRef(java.lang.String annotation,
int datasetIndex,
int annotationRefIndex)
setDatasetAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setDatasetDescription(java.lang.String description,
int datasetIndex)
setDatasetDescription in interface ome.xml.meta.MetadataStorepublic void setDatasetExperimenterRef(java.lang.String experimenter,
int datasetIndex)
setDatasetExperimenterRef in interface ome.xml.meta.MetadataStorepublic void setDatasetExperimenterGroupRef(java.lang.String group,
int datasetIndex)
setDatasetExperimenterGroupRef in interface ome.xml.meta.MetadataStorepublic void setDatasetName(java.lang.String name,
int datasetIndex)
setDatasetName in interface ome.xml.meta.MetadataStorepublic omero.model.Detector getDetector(int instrumentIndex,
int detectorIndex)
instrumentIndex - the instrument indexdetectorIndex - the detector index within the instrumentpublic void setDetectorID(java.lang.String id,
int instrumentIndex,
int detectorIndex)
setDetectorID in interface ome.xml.meta.MetadataStorepublic void setDetectorAmplificationGain(java.lang.Double amplificationGain,
int instrumentIndex,
int detectorIndex)
setDetectorAmplificationGain in interface ome.xml.meta.MetadataStorepublic void setDetectorGain(java.lang.Double gain,
int instrumentIndex,
int detectorIndex)
setDetectorGain in interface ome.xml.meta.MetadataStorepublic void setDetectorLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int detectorIndex)
setDetectorLotNumber in interface ome.xml.meta.MetadataStorepublic void setDetectorManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int detectorIndex)
setDetectorManufacturer in interface ome.xml.meta.MetadataStorepublic void setDetectorModel(java.lang.String model,
int instrumentIndex,
int detectorIndex)
setDetectorModel in interface ome.xml.meta.MetadataStorepublic void setDetectorOffset(java.lang.Double offset,
int instrumentIndex,
int detectorIndex)
setDetectorOffset in interface ome.xml.meta.MetadataStorepublic void setDetectorSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int detectorIndex)
setDetectorSerialNumber in interface ome.xml.meta.MetadataStorepublic void setDetectorType(ome.xml.model.enums.DetectorType type,
int instrumentIndex,
int detectorIndex)
setDetectorType in interface ome.xml.meta.MetadataStorepublic void setDetectorVoltage(ome.units.quantity.ElectricPotential voltage,
int instrumentIndex,
int detectorIndex)
setDetectorVoltage in interface ome.xml.meta.MetadataStorepublic void setDetectorZoom(java.lang.Double zoom,
int instrumentIndex,
int detectorIndex)
setDetectorZoom in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsID(java.lang.String id,
int imageIndex,
int channelIndex)
setDetectorSettingsID in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsBinning(ome.xml.model.enums.Binning binning,
int imageIndex,
int channelIndex)
setDetectorSettingsBinning in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsGain(java.lang.Double gain,
int imageIndex,
int channelIndex)
setDetectorSettingsGain in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsIntegration(ome.xml.model.primitives.PositiveInteger integration,
int imageIndex,
int channelIndex)
setDetectorSettingsIntegration in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsOffset(java.lang.Double offset,
int imageIndex,
int channelIndex)
setDetectorSettingsOffset in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsReadOutRate(ome.units.quantity.Frequency readOutRate,
int imageIndex,
int channelIndex)
setDetectorSettingsReadOutRate in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsVoltage(ome.units.quantity.ElectricPotential voltage,
int imageIndex,
int channelIndex)
setDetectorSettingsVoltage in interface ome.xml.meta.MetadataStorepublic void setDetectorSettingsZoom(java.lang.Double zoom,
int imageIndex,
int channelIndex)
setDetectorSettingsZoom in interface ome.xml.meta.MetadataStorepublic void setDichroicID(java.lang.String id,
int instrumentIndex,
int dichroicIndex)
setDichroicID in interface ome.xml.meta.MetadataStorepublic void setDichroicLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int dichroicIndex)
setDichroicLotNumber in interface ome.xml.meta.MetadataStorepublic void setDichroicManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int dichroicIndex)
setDichroicManufacturer in interface ome.xml.meta.MetadataStorepublic void setDichroicModel(java.lang.String model,
int instrumentIndex,
int dichroicIndex)
setDichroicModel in interface ome.xml.meta.MetadataStorepublic void setDichroicSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int dichroicIndex)
setDichroicSerialNumber in interface ome.xml.meta.MetadataStorepublic void setDoubleAnnotationID(java.lang.String id,
int doubleAnnotationIndex)
setDoubleAnnotationID in interface ome.xml.meta.MetadataStorepublic void setDoubleAnnotationNamespace(java.lang.String namespace,
int doubleAnnotationIndex)
setDoubleAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setDoubleAnnotationValue(java.lang.Double value,
int doubleAnnotationIndex)
setDoubleAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setEllipseID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setEllipseID in interface ome.xml.meta.MetadataStorepublic void setEllipseFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex)
setEllipseFillColor in interface ome.xml.meta.MetadataStorepublic void setEllipseFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setEllipseFontSize in interface ome.xml.meta.MetadataStorepublic void setEllipseText(java.lang.String text,
int ROIIndex,
int shapeIndex)
setEllipseText in interface ome.xml.meta.MetadataStorepublic void setEllipseRadiusX(java.lang.Double radiusX,
int ROIIndex,
int shapeIndex)
setEllipseRadiusX in interface ome.xml.meta.MetadataStorepublic void setEllipseRadiusY(java.lang.Double radiusY,
int ROIIndex,
int shapeIndex)
setEllipseRadiusY in interface ome.xml.meta.MetadataStorepublic void setEllipseStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex)
setEllipseStrokeColor in interface ome.xml.meta.MetadataStorepublic void setEllipseStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setEllipseStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setEllipseStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setEllipseStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setEllipseTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setEllipseTheC in interface ome.xml.meta.MetadataStorepublic void setEllipseTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setEllipseTheT in interface ome.xml.meta.MetadataStorepublic void setEllipseTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setEllipseTheZ in interface ome.xml.meta.MetadataStorepublic void setEllipseTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setEllipseTransform in interface ome.xml.meta.MetadataStorepublic void setEllipseX(java.lang.Double x,
int ROIIndex,
int shapeIndex)
setEllipseX in interface ome.xml.meta.MetadataStorepublic void setEllipseY(java.lang.Double y,
int ROIIndex,
int shapeIndex)
setEllipseY in interface ome.xml.meta.MetadataStorepublic void setExperimentID(java.lang.String id,
int experimentIndex)
setExperimentID in interface ome.xml.meta.MetadataStorepublic void setExperimentDescription(java.lang.String description,
int experimentIndex)
setExperimentDescription in interface ome.xml.meta.MetadataStorepublic void setExperimentExperimenterRef(java.lang.String experimenter,
int experimentIndex)
setExperimentExperimenterRef in interface ome.xml.meta.MetadataStorepublic void setExperimentType(ome.xml.model.enums.ExperimentType type,
int experimentIndex)
setExperimentType in interface ome.xml.meta.MetadataStorepublic void setExperimenterID(java.lang.String id,
int experimenterIndex)
setExperimenterID in interface ome.xml.meta.MetadataStorepublic void setExperimenterAnnotationRef(java.lang.String annotation,
int experimenterIndex,
int annotationRefIndex)
setExperimenterAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setExperimenterEmail(java.lang.String email,
int experimenterIndex)
setExperimenterEmail in interface ome.xml.meta.MetadataStorepublic void setExperimenterFirstName(java.lang.String firstName,
int experimenterIndex)
setExperimenterFirstName in interface ome.xml.meta.MetadataStorepublic void setExperimenterInstitution(java.lang.String institution,
int experimenterIndex)
setExperimenterInstitution in interface ome.xml.meta.MetadataStorepublic void setExperimenterLastName(java.lang.String lastName,
int experimenterIndex)
setExperimenterLastName in interface ome.xml.meta.MetadataStorepublic void setExperimenterMiddleName(java.lang.String middleName,
int experimenterIndex)
setExperimenterMiddleName in interface ome.xml.meta.MetadataStorepublic void setExperimenterUserName(java.lang.String userName,
int experimenterIndex)
setExperimenterUserName in interface ome.xml.meta.MetadataStorepublic omero.model.Filament getFilament(int instrumentIndex,
int lightSourceIndex)
public void setFilamentID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex)
setFilamentID in interface ome.xml.meta.MetadataStorepublic void setFilamentLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex)
setFilamentLotNumber in interface ome.xml.meta.MetadataStorepublic void setFilamentManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex)
setFilamentManufacturer in interface ome.xml.meta.MetadataStorepublic void setFilamentModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex)
setFilamentModel in interface ome.xml.meta.MetadataStorepublic void setFilamentPower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex)
setFilamentPower in interface ome.xml.meta.MetadataStorepublic void setFilamentSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex)
setFilamentSerialNumber in interface ome.xml.meta.MetadataStorepublic void setFilamentType(ome.xml.model.enums.FilamentType type,
int instrumentIndex,
int lightSourceIndex)
setFilamentType in interface ome.xml.meta.MetadataStorepublic void setFileAnnotationID(java.lang.String id,
int fileAnnotationIndex)
setFileAnnotationID in interface ome.xml.meta.MetadataStorepublic void setFileAnnotationNamespace(java.lang.String namespace,
int fileAnnotationIndex)
setFileAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setFilterID(java.lang.String id,
int instrumentIndex,
int filterIndex)
setFilterID in interface ome.xml.meta.MetadataStorepublic void setFilterFilterWheel(java.lang.String filterWheel,
int instrumentIndex,
int filterIndex)
setFilterFilterWheel in interface ome.xml.meta.MetadataStorepublic void setFilterLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int filterIndex)
setFilterLotNumber in interface ome.xml.meta.MetadataStorepublic void setFilterManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int filterIndex)
setFilterManufacturer in interface ome.xml.meta.MetadataStorepublic void setFilterModel(java.lang.String model,
int instrumentIndex,
int filterIndex)
setFilterModel in interface ome.xml.meta.MetadataStorepublic void setFilterSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int filterIndex)
setFilterSerialNumber in interface ome.xml.meta.MetadataStorepublic void setFilterType(ome.xml.model.enums.FilterType type,
int instrumentIndex,
int filterIndex)
setFilterType in interface ome.xml.meta.MetadataStorepublic omero.model.FilterSet getFilterSet(int instrumentIndex,
int filterSetIndex)
public void setFilterSetID(java.lang.String id,
int instrumentIndex,
int filterSetIndex)
setFilterSetID in interface ome.xml.meta.MetadataStorepublic void setFilterSetDichroicRef(java.lang.String dichroic,
int instrumentIndex,
int filterSetIndex)
setFilterSetDichroicRef in interface ome.xml.meta.MetadataStorepublic void setFilterSetEmissionFilterRef(java.lang.String emissionFilter,
int instrumentIndex,
int filterSetIndex,
int emissionFilterRefIndex)
setFilterSetEmissionFilterRef in interface ome.xml.meta.MetadataStorepublic void setFilterSetExcitationFilterRef(java.lang.String excitationFilter,
int instrumentIndex,
int filterSetIndex,
int excitationFilterRefIndex)
setFilterSetExcitationFilterRef in interface ome.xml.meta.MetadataStorepublic void setFilterSetLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int filterSetIndex)
setFilterSetLotNumber in interface ome.xml.meta.MetadataStorepublic void setFilterSetManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int filterSetIndex)
setFilterSetManufacturer in interface ome.xml.meta.MetadataStorepublic void setFilterSetModel(java.lang.String model,
int instrumentIndex,
int filterSetIndex)
setFilterSetModel in interface ome.xml.meta.MetadataStorepublic void setFilterSetSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int filterSetIndex)
setFilterSetSerialNumber in interface ome.xml.meta.MetadataStorepublic void setFolderAnnotationRef(java.lang.String annotation,
int folderIndex,
int annotationRefIndex)
setFolderAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setFolderDescription(java.lang.String description,
int folderIndex)
setFolderDescription in interface ome.xml.meta.MetadataStorepublic void setFolderFolderRef(java.lang.String folder,
int folderIndex,
int folderRefIndex)
setFolderFolderRef in interface ome.xml.meta.MetadataStorepublic void setFolderID(java.lang.String id,
int folderIndex)
setFolderID in interface ome.xml.meta.MetadataStorepublic void setFolderImageRef(java.lang.String image,
int folderIndex,
int imageRefIndex)
setFolderImageRef in interface ome.xml.meta.MetadataStorepublic void setFolderName(java.lang.String name,
int folderIndex)
setFolderName in interface ome.xml.meta.MetadataStorepublic void setFolderROIRef(java.lang.String roi,
int folderIndex,
int ROIRefIndex)
setFolderROIRef in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourceID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex)
setGenericExcitationSourceID in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourceLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex)
setGenericExcitationSourceLotNumber in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourceMap(java.util.List<ome.xml.model.MapPair> map,
int instrumentIndex,
int lightSourceIndex)
setGenericExcitationSourceMap in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourceManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex)
setGenericExcitationSourceManufacturer in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourceModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex)
setGenericExcitationSourceModel in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourcePower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex)
setGenericExcitationSourcePower in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourceSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex)
setGenericExcitationSourceSerialNumber in interface ome.xml.meta.MetadataStorepublic void setExperimenterGroupID(java.lang.String id,
int groupIndex)
setExperimenterGroupID in interface ome.xml.meta.MetadataStorepublic void setExperimenterGroupDescription(java.lang.String description,
int groupIndex)
setExperimenterGroupDescription in interface ome.xml.meta.MetadataStorepublic void setExperimenterGroupLeader(java.lang.String leader,
int groupIndex,
int leaderIndex)
setExperimenterGroupLeader in interface ome.xml.meta.MetadataStorepublic void setExperimenterGroupName(java.lang.String name,
int groupIndex)
setExperimenterGroupName in interface ome.xml.meta.MetadataStorepublic void setImageID(java.lang.String id,
int imageIndex)
setImageID in interface ome.xml.meta.MetadataStorepublic void setImageAcquisitionDate(ome.xml.model.primitives.Timestamp acquiredDate,
int imageIndex)
setImageAcquisitionDate in interface ome.xml.meta.MetadataStorepublic void setImageAnnotationRef(java.lang.String annotation,
int imageIndex,
int annotationRefIndex)
setImageAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setImageDescription(java.lang.String description,
int imageIndex)
setImageDescription in interface ome.xml.meta.MetadataStorepublic void setImageExperimentRef(java.lang.String experiment,
int imageIndex)
setImageExperimentRef in interface ome.xml.meta.MetadataStorepublic void setImageExperimenterRef(java.lang.String experimenter,
int imageIndex)
setImageExperimenterRef in interface ome.xml.meta.MetadataStorepublic void setImageExperimenterGroupRef(java.lang.String group,
int imageIndex)
setImageExperimenterGroupRef in interface ome.xml.meta.MetadataStorepublic void setImageInstrumentRef(java.lang.String instrument,
int imageIndex)
setImageInstrumentRef in interface ome.xml.meta.MetadataStorepublic void setImageMicrobeamManipulationRef(java.lang.String microbeamManipulation,
int imageIndex,
int microbeamManipulationRefIndex)
setImageMicrobeamManipulationRef in interface ome.xml.meta.MetadataStorepublic void setImageName(java.lang.String name,
int imageIndex)
setImageName in interface ome.xml.meta.MetadataStorepublic void setImageROIRef(java.lang.String roi,
int imageIndex,
int ROIRefIndex)
setImageROIRef in interface ome.xml.meta.MetadataStorepublic omero.model.ObjectiveSettings getObjectiveSettings(int imageIndex)
public void setObjectiveSettingsID(java.lang.String id,
int imageIndex)
setObjectiveSettingsID in interface ome.xml.meta.MetadataStorepublic void setObjectiveSettingsCorrectionCollar(java.lang.Double correctionCollar,
int imageIndex)
setObjectiveSettingsCorrectionCollar in interface ome.xml.meta.MetadataStorepublic void setObjectiveSettingsMedium(ome.xml.model.enums.Medium medium,
int imageIndex)
setObjectiveSettingsMedium in interface ome.xml.meta.MetadataStorepublic void setObjectiveSettingsRefractiveIndex(java.lang.Double refractiveIndex,
int imageIndex)
setObjectiveSettingsRefractiveIndex in interface ome.xml.meta.MetadataStorepublic omero.model.ImagingEnvironment getImagingEnvironment(int imageIndex)
public void setImagingEnvironmentAirPressure(ome.units.quantity.Pressure airPressure,
int imageIndex)
setImagingEnvironmentAirPressure in interface ome.xml.meta.MetadataStorepublic void setImagingEnvironmentCO2Percent(ome.xml.model.primitives.PercentFraction co2percent,
int imageIndex)
setImagingEnvironmentCO2Percent in interface ome.xml.meta.MetadataStorepublic void setImagingEnvironmentHumidity(ome.xml.model.primitives.PercentFraction humidity,
int imageIndex)
setImagingEnvironmentHumidity in interface ome.xml.meta.MetadataStorepublic void setImagingEnvironmentMap(java.util.List<ome.xml.model.MapPair> map,
int imageIndex)
setImagingEnvironmentMap in interface ome.xml.meta.MetadataStorepublic void setImagingEnvironmentTemperature(ome.units.quantity.Temperature temperature,
int imageIndex)
setImagingEnvironmentTemperature in interface ome.xml.meta.MetadataStorepublic void setInstrumentID(java.lang.String id,
int instrumentIndex)
setInstrumentID in interface ome.xml.meta.MetadataStorepublic omero.model.Laser getLaser(int instrumentIndex,
int lightSourceIndex)
public void setLaserID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex)
setLaserID in interface ome.xml.meta.MetadataStorepublic void setLaserFrequencyMultiplication(ome.xml.model.primitives.PositiveInteger frequencyMultiplication,
int instrumentIndex,
int lightSourceIndex)
setLaserFrequencyMultiplication in interface ome.xml.meta.MetadataStorepublic void setLaserLaserMedium(ome.xml.model.enums.LaserMedium laserMedium,
int instrumentIndex,
int lightSourceIndex)
setLaserLaserMedium in interface ome.xml.meta.MetadataStorepublic void setLaserLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex)
setLaserLotNumber in interface ome.xml.meta.MetadataStorepublic void setLaserManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex)
setLaserManufacturer in interface ome.xml.meta.MetadataStorepublic void setLaserModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex)
setLaserModel in interface ome.xml.meta.MetadataStorepublic void setLaserPockelCell(java.lang.Boolean pockelCell,
int instrumentIndex,
int lightSourceIndex)
setLaserPockelCell in interface ome.xml.meta.MetadataStorepublic void setLaserPower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex)
setLaserPower in interface ome.xml.meta.MetadataStorepublic void setLaserPulse(ome.xml.model.enums.Pulse pulse,
int instrumentIndex,
int lightSourceIndex)
setLaserPulse in interface ome.xml.meta.MetadataStorepublic void setLaserPump(java.lang.String pump,
int instrumentIndex,
int lightSourceIndex)
setLaserPump in interface ome.xml.meta.MetadataStorepublic void setLaserRepetitionRate(ome.units.quantity.Frequency repetitionRate,
int instrumentIndex,
int lightSourceIndex)
setLaserRepetitionRate in interface ome.xml.meta.MetadataStorepublic void setLaserSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex)
setLaserSerialNumber in interface ome.xml.meta.MetadataStorepublic void setLaserTuneable(java.lang.Boolean tuneable,
int instrumentIndex,
int lightSourceIndex)
setLaserTuneable in interface ome.xml.meta.MetadataStorepublic void setLaserType(ome.xml.model.enums.LaserType type,
int instrumentIndex,
int lightSourceIndex)
setLaserType in interface ome.xml.meta.MetadataStorepublic void setLaserWavelength(ome.units.quantity.Length wavelength,
int instrumentIndex,
int lightSourceIndex)
setLaserWavelength in interface ome.xml.meta.MetadataStorepublic omero.model.LightEmittingDiode getLightEmittingDiode(int instrumentIndex,
int lightSourceIndex)
public void setLightEmittingDiodeID(java.lang.String id,
int instrumentIndex,
int lightSourceIndex)
setLightEmittingDiodeID in interface ome.xml.meta.MetadataStorepublic void setLightEmittingDiodeLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int lightSourceIndex)
setLightEmittingDiodeLotNumber in interface ome.xml.meta.MetadataStorepublic void setLightEmittingDiodeManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int lightSourceIndex)
setLightEmittingDiodeManufacturer in interface ome.xml.meta.MetadataStorepublic void setLightEmittingDiodeModel(java.lang.String model,
int instrumentIndex,
int lightSourceIndex)
setLightEmittingDiodeModel in interface ome.xml.meta.MetadataStorepublic void setLightEmittingDiodePower(ome.units.quantity.Power power,
int instrumentIndex,
int lightSourceIndex)
setLightEmittingDiodePower in interface ome.xml.meta.MetadataStorepublic void setLightEmittingDiodeSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int lightSourceIndex)
setLightEmittingDiodeSerialNumber in interface ome.xml.meta.MetadataStorepublic void setLightPathDichroicRef(java.lang.String dichroic,
int imageIndex,
int channelIndex)
setLightPathDichroicRef in interface ome.xml.meta.MetadataStorepublic void setLightPathEmissionFilterRef(java.lang.String emissionFilter,
int imageIndex,
int channelIndex,
int emissionFilterRefIndex)
setLightPathEmissionFilterRef in interface ome.xml.meta.MetadataStorepublic void setLightPathExcitationFilterRef(java.lang.String excitationFilter,
int imageIndex,
int channelIndex,
int excitationFilterRefIndex)
setLightPathExcitationFilterRef in interface ome.xml.meta.MetadataStorepublic omero.model.Line getLine(int ROIIndex,
int shapeIndex)
public void setLineID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setLineID in interface ome.xml.meta.MetadataStorepublic void setLineText(java.lang.String text,
int ROIIndex,
int shapeIndex)
setLineText in interface ome.xml.meta.MetadataStorepublic void setLineFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex)
setLineFillColor in interface ome.xml.meta.MetadataStorepublic void setLineFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setLineFontSize in interface ome.xml.meta.MetadataStorepublic void setLineStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex)
setLineStrokeColor in interface ome.xml.meta.MetadataStorepublic void setLineStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setLineStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setLineStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setLineStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setLineTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setLineTheC in interface ome.xml.meta.MetadataStorepublic void setLineTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setLineTheT in interface ome.xml.meta.MetadataStorepublic void setLineTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setLineTheZ in interface ome.xml.meta.MetadataStorepublic void setLineTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setLineTransform in interface ome.xml.meta.MetadataStorepublic void setLineX1(java.lang.Double x1,
int ROIIndex,
int shapeIndex)
setLineX1 in interface ome.xml.meta.MetadataStorepublic void setLineX2(java.lang.Double x2,
int ROIIndex,
int shapeIndex)
setLineX2 in interface ome.xml.meta.MetadataStorepublic void setLineY1(java.lang.Double y1,
int ROIIndex,
int shapeIndex)
setLineY1 in interface ome.xml.meta.MetadataStorepublic void setLineY2(java.lang.Double y2,
int ROIIndex,
int shapeIndex)
setLineY2 in interface ome.xml.meta.MetadataStorepublic omero.model.ListAnnotation getListAnnotation(int listAnnotationIndex)
public void setListAnnotationID(java.lang.String id,
int listAnnotationIndex)
setListAnnotationID in interface ome.xml.meta.MetadataStorepublic void setListAnnotationAnnotationRef(java.lang.String annotation,
int listAnnotationIndex,
int annotationRefIndex)
setListAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setListAnnotationNamespace(java.lang.String namespace,
int listAnnotationIndex)
setListAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic omero.model.LongAnnotation getLongAnnotation(int longAnnotationIndex)
public void setLongAnnotationID(java.lang.String id,
int longAnnotationIndex)
setLongAnnotationID in interface ome.xml.meta.MetadataStorepublic void setLongAnnotationNamespace(java.lang.String namespace,
int longAnnotationIndex)
setLongAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setLongAnnotationValue(java.lang.Long value,
int longAnnotationIndex)
setLongAnnotationValue in interface ome.xml.meta.MetadataStorepublic omero.model.Mask getMask(int ROIIndex,
int shapeIndex)
public void setMaskBinData(byte[] binData,
int roiIndex,
int shapeIndex)
setMaskBinData in interface ome.xml.meta.MetadataStorepublic void setMaskBinDataBigEndian(java.lang.Boolean isBigEndian,
int roiIndex,
int shapeIndex)
setMaskBinDataBigEndian in interface ome.xml.meta.MetadataStorepublic void setMaskBinDataCompression(ome.xml.model.enums.Compression compression,
int roiIndex,
int shapeIndex)
setMaskBinDataCompression in interface ome.xml.meta.MetadataStorepublic void setMaskBinDataLength(ome.xml.model.primitives.NonNegativeLong length,
int roiIndex,
int shapeIndex)
setMaskBinDataLength in interface ome.xml.meta.MetadataStorepublic void setMaskText(java.lang.String description,
int ROIIndex,
int shapeIndex)
setMaskText in interface ome.xml.meta.MetadataStorepublic void setMaskFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex)
setMaskFillColor in interface ome.xml.meta.MetadataStorepublic void setMaskFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setMaskFontSize in interface ome.xml.meta.MetadataStorepublic void setMaskID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setMaskID in interface ome.xml.meta.MetadataStorepublic void setMaskStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex)
setMaskStrokeColor in interface ome.xml.meta.MetadataStorepublic void setMaskStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setMaskStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setMaskStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setMaskStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setMaskTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setMaskTheC in interface ome.xml.meta.MetadataStorepublic void setMaskTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setMaskTheT in interface ome.xml.meta.MetadataStorepublic void setMaskTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setMaskTheZ in interface ome.xml.meta.MetadataStorepublic void setMaskTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setMaskTransform in interface ome.xml.meta.MetadataStorepublic void setMaskX(java.lang.Double x,
int ROIIndex,
int shapeIndex)
setMaskX in interface ome.xml.meta.MetadataStorepublic void setMaskY(java.lang.Double y,
int ROIIndex,
int shapeIndex)
setMaskY in interface ome.xml.meta.MetadataStorepublic void setMaskHeight(java.lang.Double height,
int ROIIndex,
int shapeIndex)
setMaskHeight in interface ome.xml.meta.MetadataStorepublic void setMaskWidth(java.lang.Double width,
int ROIIndex,
int shapeIndex)
setMaskWidth in interface ome.xml.meta.MetadataStorepublic omero.model.MicrobeamManipulation getMicrobeamManipulation(int experimentIndex,
int microbeamManipulationIndex)
public void setMicrobeamManipulationID(java.lang.String id,
int experimentIndex,
int microbeamManipulationIndex)
setMicrobeamManipulationID in interface ome.xml.meta.MetadataStorepublic void setMicrobeamManipulationDescription(java.lang.String description,
int experimentIndex,
int microbeamManipulationIndex)
setMicrobeamManipulationDescription in interface ome.xml.meta.MetadataStorepublic void setMicrobeamManipulationExperimenterRef(java.lang.String experimenter,
int experimentIndex,
int microbeamManipulationIndex)
setMicrobeamManipulationExperimenterRef in interface ome.xml.meta.MetadataStorepublic void setMicrobeamManipulationROIRef(java.lang.String roi,
int experimentIndex,
int microbeamManipulationIndex,
int ROIRefIndex)
setMicrobeamManipulationROIRef in interface ome.xml.meta.MetadataStorepublic void setMicrobeamManipulationType(ome.xml.model.enums.MicrobeamManipulationType type,
int experimentIndex,
int microbeamManipulationIndex)
setMicrobeamManipulationType in interface ome.xml.meta.MetadataStorepublic omero.model.LightSettings getMicrobeamManipulationLightSourceSettings(int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex)
public void setMicrobeamManipulationLightSourceSettingsID(java.lang.String id,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex)
setMicrobeamManipulationLightSourceSettingsID in interface ome.xml.meta.MetadataStorepublic void setMicrobeamManipulationLightSourceSettingsAttenuation(ome.xml.model.primitives.PercentFraction attenuation,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex)
setMicrobeamManipulationLightSourceSettingsAttenuation in interface ome.xml.meta.MetadataStorepublic void setMicrobeamManipulationLightSourceSettingsWavelength(ome.units.quantity.Length wavelength,
int experimentIndex,
int microbeamManipulationIndex,
int lightSourceSettingsIndex)
setMicrobeamManipulationLightSourceSettingsWavelength in interface ome.xml.meta.MetadataStorepublic void setMicroscopeLotNumber(java.lang.String lotNumber,
int instrumentIndex)
setMicroscopeLotNumber in interface ome.xml.meta.MetadataStorepublic void setMicroscopeManufacturer(java.lang.String manufacturer,
int instrumentIndex)
setMicroscopeManufacturer in interface ome.xml.meta.MetadataStorepublic void setMicroscopeModel(java.lang.String model,
int instrumentIndex)
setMicroscopeModel in interface ome.xml.meta.MetadataStorepublic void setMicroscopeSerialNumber(java.lang.String serialNumber,
int instrumentIndex)
setMicroscopeSerialNumber in interface ome.xml.meta.MetadataStorepublic void setMicroscopeType(ome.xml.model.enums.MicroscopeType type,
int instrumentIndex)
setMicroscopeType in interface ome.xml.meta.MetadataStorepublic omero.model.Objective getObjective(int instrumentIndex,
int objectiveIndex)
public void setObjectiveCalibratedMagnification(java.lang.Double calibratedMagnification,
int instrumentIndex,
int objectiveIndex)
setObjectiveCalibratedMagnification in interface ome.xml.meta.MetadataStorepublic void setObjectiveCorrection(ome.xml.model.enums.Correction correction,
int instrumentIndex,
int objectiveIndex)
setObjectiveCorrection in interface ome.xml.meta.MetadataStorepublic void setObjectiveID(java.lang.String id,
int instrumentIndex,
int objectiveIndex)
setObjectiveID in interface ome.xml.meta.MetadataStorepublic void setObjectiveImmersion(ome.xml.model.enums.Immersion immersion,
int instrumentIndex,
int objectiveIndex)
setObjectiveImmersion in interface ome.xml.meta.MetadataStorepublic void setObjectiveIris(java.lang.Boolean iris,
int instrumentIndex,
int objectiveIndex)
setObjectiveIris in interface ome.xml.meta.MetadataStorepublic void setObjectiveLensNA(java.lang.Double lensNA,
int instrumentIndex,
int objectiveIndex)
setObjectiveLensNA in interface ome.xml.meta.MetadataStorepublic void setObjectiveLotNumber(java.lang.String lotNumber,
int instrumentIndex,
int objectiveIndex)
setObjectiveLotNumber in interface ome.xml.meta.MetadataStorepublic void setObjectiveManufacturer(java.lang.String manufacturer,
int instrumentIndex,
int objectiveIndex)
setObjectiveManufacturer in interface ome.xml.meta.MetadataStorepublic void setObjectiveModel(java.lang.String model,
int instrumentIndex,
int objectiveIndex)
setObjectiveModel in interface ome.xml.meta.MetadataStorepublic void setObjectiveNominalMagnification(java.lang.Double nominalMagnification,
int instrumentIndex,
int objectiveIndex)
setObjectiveNominalMagnification in interface ome.xml.meta.MetadataStorepublic void setObjectiveSerialNumber(java.lang.String serialNumber,
int instrumentIndex,
int objectiveIndex)
setObjectiveSerialNumber in interface ome.xml.meta.MetadataStorepublic void setObjectiveWorkingDistance(ome.units.quantity.Length workingDistance,
int instrumentIndex,
int objectiveIndex)
setObjectiveWorkingDistance in interface ome.xml.meta.MetadataStorepublic void setPixelsID(java.lang.String id,
int imageIndex)
setPixelsID in interface ome.xml.meta.MetadataStorepublic void setPixelsBigEndian(java.lang.Boolean value,
int index)
setPixelsBigEndian in interface ome.xml.meta.MetadataStorepublic void setPixelsBinData(byte[] binData,
int imageIndex,
int binDataIndex)
setPixelsBinData in interface ome.xml.meta.MetadataStorepublic void setPixelsBinDataBigEndian(java.lang.Boolean bigEndian,
int imageIndex,
int binDataIndex)
setPixelsBinDataBigEndian in interface ome.xml.meta.MetadataStorepublic void setPixelsBinDataCompression(ome.xml.model.enums.Compression compression,
int imageIndex,
int binDataIndex)
setPixelsBinDataCompression in interface ome.xml.meta.MetadataStorepublic void setPixelsBinDataLength(ome.xml.model.primitives.NonNegativeLong length,
int imageIndex,
int binDataIndex)
setPixelsBinDataLength in interface ome.xml.meta.MetadataStorepublic void setPixelsDimensionOrder(ome.xml.model.enums.DimensionOrder dimensionOrder,
int imageIndex)
setPixelsDimensionOrder in interface ome.xml.meta.MetadataStorepublic void setPixelsInterleaved(java.lang.Boolean value,
int index)
setPixelsInterleaved in interface ome.xml.meta.MetadataStorepublic void setPixelsPhysicalSizeX(ome.units.quantity.Length physicalSizeX,
int imageIndex)
setPixelsPhysicalSizeX in interface ome.xml.meta.MetadataStorepublic void setPixelsPhysicalSizeY(ome.units.quantity.Length physicalSizeY,
int imageIndex)
setPixelsPhysicalSizeY in interface ome.xml.meta.MetadataStorepublic void setPixelsPhysicalSizeZ(ome.units.quantity.Length physicalSizeZ,
int imageIndex)
setPixelsPhysicalSizeZ in interface ome.xml.meta.MetadataStorepublic void setPixelsSignificantBits(ome.xml.model.primitives.PositiveInteger value,
int imageIndex)
setPixelsSignificantBits in interface ome.xml.meta.MetadataStorepublic void setPixelsSizeC(ome.xml.model.primitives.PositiveInteger sizeC,
int imageIndex)
setPixelsSizeC in interface ome.xml.meta.MetadataStorepublic void setPixelsSizeT(ome.xml.model.primitives.PositiveInteger sizeT,
int imageIndex)
setPixelsSizeT in interface ome.xml.meta.MetadataStorepublic void setPixelsSizeX(ome.xml.model.primitives.PositiveInteger sizeX,
int imageIndex)
setPixelsSizeX in interface ome.xml.meta.MetadataStorepublic void setPixelsSizeY(ome.xml.model.primitives.PositiveInteger sizeY,
int imageIndex)
setPixelsSizeY in interface ome.xml.meta.MetadataStorepublic void setPixelsSizeZ(ome.xml.model.primitives.PositiveInteger sizeZ,
int imageIndex)
setPixelsSizeZ in interface ome.xml.meta.MetadataStorepublic void setPixelsTimeIncrement(ome.units.quantity.Time timeIncrement,
int imageIndex)
setPixelsTimeIncrement in interface ome.xml.meta.MetadataStorepublic void setPixelsType(ome.xml.model.enums.PixelType type,
int imageIndex)
setPixelsType in interface ome.xml.meta.MetadataStorepublic void setPlaneAnnotationRef(java.lang.String annotation,
int imageIndex,
int planeIndex,
int annotationRefIndex)
setPlaneAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setPlaneDeltaT(ome.units.quantity.Time deltaT,
int imageIndex,
int planeIndex)
setPlaneDeltaT in interface ome.xml.meta.MetadataStorepublic void setPlaneExposureTime(ome.units.quantity.Time exposureTime,
int imageIndex,
int planeIndex)
setPlaneExposureTime in interface ome.xml.meta.MetadataStorepublic void setPlaneHashSHA1(java.lang.String hashSHA1,
int imageIndex,
int planeIndex)
setPlaneHashSHA1 in interface ome.xml.meta.MetadataStorepublic void setPlanePositionX(ome.units.quantity.Length positionX,
int imageIndex,
int planeIndex)
setPlanePositionX in interface ome.xml.meta.MetadataStorepublic void setPlanePositionY(ome.units.quantity.Length positionY,
int imageIndex,
int planeIndex)
setPlanePositionY in interface ome.xml.meta.MetadataStorepublic void setPlanePositionZ(ome.units.quantity.Length positionZ,
int imageIndex,
int planeIndex)
setPlanePositionZ in interface ome.xml.meta.MetadataStorepublic void setPlaneTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int imageIndex,
int planeIndex)
setPlaneTheC in interface ome.xml.meta.MetadataStorepublic void setPlaneTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int imageIndex,
int planeIndex)
setPlaneTheT in interface ome.xml.meta.MetadataStorepublic void setPlaneTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int imageIndex,
int planeIndex)
setPlaneTheZ in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionAnnotationRef(java.lang.String annotation,
int plateIndex,
int plateAcquisitionIndex,
int annotationRefIndex)
setPlateAcquisitionAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionDescription(java.lang.String description,
int plateIndex,
int plateAcquisitionIndex)
setPlateAcquisitionDescription in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionEndTime(ome.xml.model.primitives.Timestamp endTime,
int plateIndex,
int plateAcquisitionIndex)
setPlateAcquisitionEndTime in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionID(java.lang.String id,
int plateIndex,
int plateAcquisitionIndex)
setPlateAcquisitionID in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionMaximumFieldCount(ome.xml.model.primitives.PositiveInteger maximumFieldCount,
int plateIndex,
int plateAcquisitionIndex)
setPlateAcquisitionMaximumFieldCount in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionName(java.lang.String name,
int plateIndex,
int plateAcquisitionIndex)
setPlateAcquisitionName in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionStartTime(ome.xml.model.primitives.Timestamp startTime,
int plateIndex,
int plateAcquisitionIndex)
setPlateAcquisitionStartTime in interface ome.xml.meta.MetadataStorepublic void setPlateAcquisitionWellSampleRef(java.lang.String wellSample,
int plateIndex,
int plateAcquisitionIndex,
int wellSampleRefIndex)
setPlateAcquisitionWellSampleRef in interface ome.xml.meta.MetadataStorepublic void setPlateAnnotationRef(java.lang.String annotation,
int plateIndex,
int annotationRefIndex)
setPlateAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setPlateColumnNamingConvention(ome.xml.model.enums.NamingConvention columnNamingConvention,
int plateIndex)
setPlateColumnNamingConvention in interface ome.xml.meta.MetadataStorepublic void setPlateColumns(ome.xml.model.primitives.PositiveInteger columns,
int plateIndex)
setPlateColumns in interface ome.xml.meta.MetadataStorepublic void setPlateDescription(java.lang.String description,
int plateIndex)
setPlateDescription in interface ome.xml.meta.MetadataStorepublic void setPlateExternalIdentifier(java.lang.String externalIdentifier,
int plateIndex)
setPlateExternalIdentifier in interface ome.xml.meta.MetadataStorepublic void setPlateID(java.lang.String id,
int plateIndex)
setPlateID in interface ome.xml.meta.MetadataStorepublic void setPlateName(java.lang.String name,
int plateIndex)
setPlateName in interface ome.xml.meta.MetadataStorepublic void setPlateRowNamingConvention(ome.xml.model.enums.NamingConvention rowNamingConvention,
int plateIndex)
setPlateRowNamingConvention in interface ome.xml.meta.MetadataStorepublic void setPlateRows(ome.xml.model.primitives.PositiveInteger rows,
int plateIndex)
setPlateRows in interface ome.xml.meta.MetadataStorepublic void setPlateStatus(java.lang.String status,
int plateIndex)
setPlateStatus in interface ome.xml.meta.MetadataStorepublic void setPlateWellOriginX(ome.units.quantity.Length wellOriginX,
int plateIndex)
setPlateWellOriginX in interface ome.xml.meta.MetadataStorepublic void setPlateWellOriginY(ome.units.quantity.Length wellOriginY,
int plateIndex)
setPlateWellOriginY in interface ome.xml.meta.MetadataStorepublic void setPointText(java.lang.String text,
int ROIIndex,
int shapeIndex)
setPointText in interface ome.xml.meta.MetadataStorepublic void setPointFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex)
setPointFillColor in interface ome.xml.meta.MetadataStorepublic void setPointFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setPointFontSize in interface ome.xml.meta.MetadataStorepublic void setPointID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setPointID in interface ome.xml.meta.MetadataStorepublic void setPointStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex)
setPointStrokeColor in interface ome.xml.meta.MetadataStorepublic void setPointStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setPointStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setPointStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setPointStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setPointTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setPointTheC in interface ome.xml.meta.MetadataStorepublic void setPointTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setPointTheT in interface ome.xml.meta.MetadataStorepublic void setPointTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setPointTheZ in interface ome.xml.meta.MetadataStorepublic void setPointTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setPointTransform in interface ome.xml.meta.MetadataStorepublic void setPointX(java.lang.Double x,
int ROIIndex,
int shapeIndex)
setPointX in interface ome.xml.meta.MetadataStorepublic void setPointY(java.lang.Double y,
int ROIIndex,
int shapeIndex)
setPointY in interface ome.xml.meta.MetadataStorepublic void setPolylineID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setPolylineID in interface ome.xml.meta.MetadataStorepublic void setPolylineText(java.lang.String text,
int ROIIndex,
int shapeIndex)
setPolylineText in interface ome.xml.meta.MetadataStorepublic void setPolylineFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex)
setPolylineFillColor in interface ome.xml.meta.MetadataStorepublic void setPolylineFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setPolylineFontSize in interface ome.xml.meta.MetadataStorepublic void setPolylinePoints(java.lang.String points,
int ROIIndex,
int shapeIndex)
setPolylinePoints in interface ome.xml.meta.MetadataStorepublic void setPolylineStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex)
setPolylineStrokeColor in interface ome.xml.meta.MetadataStorepublic void setPolylineStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setPolylineStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setPolylineStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setPolylineStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setPolylineTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setPolylineTheC in interface ome.xml.meta.MetadataStorepublic void setPolylineTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setPolylineTheT in interface ome.xml.meta.MetadataStorepublic void setPolylineTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setPolylineTheZ in interface ome.xml.meta.MetadataStorepublic void setPolylineTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setPolylineTransform in interface ome.xml.meta.MetadataStorepublic void setProjectID(java.lang.String id,
int projectIndex)
setProjectID in interface ome.xml.meta.MetadataStorepublic void setProjectAnnotationRef(java.lang.String annotation,
int projectIndex,
int annotationRefIndex)
setProjectAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setProjectDescription(java.lang.String description,
int projectIndex)
setProjectDescription in interface ome.xml.meta.MetadataStorepublic void setProjectExperimenterRef(java.lang.String experimenter,
int projectIndex)
setProjectExperimenterRef in interface ome.xml.meta.MetadataStorepublic void setProjectExperimenterGroupRef(java.lang.String group,
int projectIndex)
setProjectExperimenterGroupRef in interface ome.xml.meta.MetadataStorepublic void setProjectName(java.lang.String name,
int projectIndex)
setProjectName in interface ome.xml.meta.MetadataStorepublic void setROIID(java.lang.String id,
int ROIIndex)
setROIID in interface ome.xml.meta.MetadataStorepublic void setROIAnnotationRef(java.lang.String annotation,
int ROIIndex,
int annotationRefIndex)
setROIAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setROIDescription(java.lang.String description,
int ROIIndex)
setROIDescription in interface ome.xml.meta.MetadataStorepublic void setROIName(java.lang.String name,
int ROIIndex)
setROIName in interface ome.xml.meta.MetadataStorepublic void setReagentID(java.lang.String id,
int screenIndex,
int reagentIndex)
setReagentID in interface ome.xml.meta.MetadataStorepublic void setReagentAnnotationRef(java.lang.String annotation,
int screenIndex,
int reagentIndex,
int annotationRefIndex)
setReagentAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setReagentDescription(java.lang.String description,
int screenIndex,
int reagentIndex)
setReagentDescription in interface ome.xml.meta.MetadataStorepublic void setReagentName(java.lang.String name,
int screenIndex,
int reagentIndex)
setReagentName in interface ome.xml.meta.MetadataStorepublic void setReagentReagentIdentifier(java.lang.String reagentIdentifier,
int screenIndex,
int reagentIndex)
setReagentReagentIdentifier in interface ome.xml.meta.MetadataStorepublic void setRectangleID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setRectangleID in interface ome.xml.meta.MetadataStorepublic void setRectangleText(java.lang.String description,
int ROIIndex,
int shapeIndex)
setRectangleText in interface ome.xml.meta.MetadataStorepublic void setRectangleFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex)
setRectangleFillColor in interface ome.xml.meta.MetadataStorepublic void setRectangleFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setRectangleFontSize in interface ome.xml.meta.MetadataStorepublic void setRectangleHeight(java.lang.Double height,
int ROIIndex,
int shapeIndex)
setRectangleHeight in interface ome.xml.meta.MetadataStorepublic void setRectangleStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex)
setRectangleStrokeColor in interface ome.xml.meta.MetadataStorepublic void setRectangleStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setRectangleStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setRectangleStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setRectangleStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setRectangleTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setRectangleTheC in interface ome.xml.meta.MetadataStorepublic void setRectangleTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setRectangleTheT in interface ome.xml.meta.MetadataStorepublic void setRectangleTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setRectangleTheZ in interface ome.xml.meta.MetadataStorepublic void setRectangleTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setRectangleTransform in interface ome.xml.meta.MetadataStorepublic void setRectangleWidth(java.lang.Double width,
int ROIIndex,
int shapeIndex)
setRectangleWidth in interface ome.xml.meta.MetadataStorepublic void setRectangleX(java.lang.Double x,
int ROIIndex,
int shapeIndex)
setRectangleX in interface ome.xml.meta.MetadataStorepublic void setRectangleY(java.lang.Double y,
int ROIIndex,
int shapeIndex)
setRectangleY in interface ome.xml.meta.MetadataStorepublic void setRoot(ome.xml.meta.MetadataRoot root)
setRoot in interface ome.xml.meta.MetadataStorepublic void setScreenID(java.lang.String id,
int screenIndex)
setScreenID in interface ome.xml.meta.MetadataStorepublic void setScreenAnnotationRef(java.lang.String annotation,
int screenIndex,
int annotationRefIndex)
setScreenAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setScreenDescription(java.lang.String description,
int screenIndex)
setScreenDescription in interface ome.xml.meta.MetadataStorepublic void setScreenName(java.lang.String name,
int screenIndex)
setScreenName in interface ome.xml.meta.MetadataStorepublic void setScreenPlateRef(java.lang.String plate,
int screenIndex,
int plateRefIndex)
setScreenPlateRef in interface ome.xml.meta.MetadataStorepublic void setScreenProtocolDescription(java.lang.String protocolDescription,
int screenIndex)
setScreenProtocolDescription in interface ome.xml.meta.MetadataStorepublic void setScreenProtocolIdentifier(java.lang.String protocolIdentifier,
int screenIndex)
setScreenProtocolIdentifier in interface ome.xml.meta.MetadataStorepublic void setScreenReagentSetDescription(java.lang.String reagentSetDescription,
int screenIndex)
setScreenReagentSetDescription in interface ome.xml.meta.MetadataStorepublic void setScreenReagentSetIdentifier(java.lang.String reagentSetIdentifier,
int screenIndex)
setScreenReagentSetIdentifier in interface ome.xml.meta.MetadataStorepublic void setScreenType(java.lang.String type,
int screenIndex)
setScreenType in interface ome.xml.meta.MetadataStorepublic void setStageLabelName(java.lang.String name,
int imageIndex)
setStageLabelName in interface ome.xml.meta.MetadataStorepublic void setStageLabelX(ome.units.quantity.Length x,
int imageIndex)
setStageLabelX in interface ome.xml.meta.MetadataStorepublic void setStageLabelY(ome.units.quantity.Length y,
int imageIndex)
setStageLabelY in interface ome.xml.meta.MetadataStorepublic void setStageLabelZ(ome.units.quantity.Length z,
int imageIndex)
setStageLabelZ in interface ome.xml.meta.MetadataStorepublic void setCommentAnnotationID(java.lang.String id,
int commentAnnotationIndex)
setCommentAnnotationID in interface ome.xml.meta.MetadataStorepublic void setCommentAnnotationNamespace(java.lang.String namespace,
int commentAnnotationIndex)
setCommentAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setCommentAnnotationAnnotator(java.lang.String value,
int index)
setCommentAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setCommentAnnotationValue(java.lang.String value,
int commentAnnotationIndex)
setCommentAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setLabelID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setLabelID in interface ome.xml.meta.MetadataStorepublic void setLabelText(java.lang.String text,
int ROIIndex,
int shapeIndex)
setLabelText in interface ome.xml.meta.MetadataStorepublic void setLabelFillColor(ome.xml.model.primitives.Color fill,
int ROIIndex,
int shapeIndex)
setLabelFillColor in interface ome.xml.meta.MetadataStorepublic void setLabelFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setLabelFontSize in interface ome.xml.meta.MetadataStorepublic void setLabelStrokeColor(ome.xml.model.primitives.Color stroke,
int ROIIndex,
int shapeIndex)
setLabelStrokeColor in interface ome.xml.meta.MetadataStorepublic void setLabelStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setLabelStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setLabelStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setLabelStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setLabelTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setLabelTheC in interface ome.xml.meta.MetadataStorepublic void setLabelTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setLabelTheT in interface ome.xml.meta.MetadataStorepublic void setLabelTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setLabelTheZ in interface ome.xml.meta.MetadataStorepublic void setLabelTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setLabelTransform in interface ome.xml.meta.MetadataStorepublic void setLabelX(java.lang.Double x,
int ROIIndex,
int shapeIndex)
setLabelX in interface ome.xml.meta.MetadataStorepublic void setLabelY(java.lang.Double y,
int ROIIndex,
int shapeIndex)
setLabelY in interface ome.xml.meta.MetadataStorepublic void setTiffDataFirstC(ome.xml.model.primitives.NonNegativeInteger firstC,
int imageIndex,
int tiffDataIndex)
setTiffDataFirstC in interface ome.xml.meta.MetadataStorepublic void setTiffDataFirstT(ome.xml.model.primitives.NonNegativeInteger firstT,
int imageIndex,
int tiffDataIndex)
setTiffDataFirstT in interface ome.xml.meta.MetadataStorepublic void setTiffDataFirstZ(ome.xml.model.primitives.NonNegativeInteger firstZ,
int imageIndex,
int tiffDataIndex)
setTiffDataFirstZ in interface ome.xml.meta.MetadataStorepublic void setTiffDataIFD(ome.xml.model.primitives.NonNegativeInteger ifd,
int imageIndex,
int tiffDataIndex)
setTiffDataIFD in interface ome.xml.meta.MetadataStorepublic void setTiffDataPlaneCount(ome.xml.model.primitives.NonNegativeInteger planeCount,
int imageIndex,
int tiffDataIndex)
setTiffDataPlaneCount in interface ome.xml.meta.MetadataStorepublic void setTimestampAnnotationID(java.lang.String id,
int timestampAnnotationIndex)
setTimestampAnnotationID in interface ome.xml.meta.MetadataStorepublic void setTimestampAnnotationNamespace(java.lang.String namespace,
int timestampAnnotationIndex)
setTimestampAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setTimestampAnnotationValue(ome.xml.model.primitives.Timestamp value,
int timestampAnnotationIndex)
setTimestampAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setTransmittanceRangeCutIn(ome.units.quantity.Length cutIn,
int instrumentIndex,
int filterIndex)
setTransmittanceRangeCutIn in interface ome.xml.meta.MetadataStorepublic void setTransmittanceRangeCutInTolerance(ome.units.quantity.Length cutInTolerance,
int instrumentIndex,
int filterIndex)
setTransmittanceRangeCutInTolerance in interface ome.xml.meta.MetadataStorepublic void setTransmittanceRangeCutOut(ome.units.quantity.Length cutOut,
int instrumentIndex,
int filterIndex)
setTransmittanceRangeCutOut in interface ome.xml.meta.MetadataStorepublic void setTransmittanceRangeCutOutTolerance(ome.units.quantity.Length cutOutTolerance,
int instrumentIndex,
int filterIndex)
setTransmittanceRangeCutOutTolerance in interface ome.xml.meta.MetadataStorepublic void setTransmittanceRangeTransmittance(ome.xml.model.primitives.PercentFraction transmittance,
int instrumentIndex,
int filterIndex)
setTransmittanceRangeTransmittance in interface ome.xml.meta.MetadataStorepublic void setUUID(java.lang.String uuid)
setUUID in interface ome.xml.meta.MetadataStorepublic void setUUIDFileName(java.lang.String fileName,
int imageIndex,
int tiffDataIndex)
setUUIDFileName in interface ome.xml.meta.MetadataStorepublic void setUUIDValue(java.lang.String fileName,
int imageIndex,
int tiffDataIndex)
setUUIDValue in interface ome.xml.meta.MetadataStorepublic void setWellID(java.lang.String id,
int plateIndex,
int wellIndex)
setWellID in interface ome.xml.meta.MetadataStorepublic void setWellAnnotationRef(java.lang.String annotation,
int plateIndex,
int wellIndex,
int annotationRefIndex)
setWellAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setWellColor(ome.xml.model.primitives.Color color,
int plateIndex,
int wellIndex)
setWellColor in interface ome.xml.meta.MetadataStorepublic void setWellColumn(ome.xml.model.primitives.NonNegativeInteger column,
int plateIndex,
int wellIndex)
setWellColumn in interface ome.xml.meta.MetadataStorepublic void setWellExternalDescription(java.lang.String externalDescription,
int plateIndex,
int wellIndex)
setWellExternalDescription in interface ome.xml.meta.MetadataStorepublic void setWellExternalIdentifier(java.lang.String externalIdentifier,
int plateIndex,
int wellIndex)
setWellExternalIdentifier in interface ome.xml.meta.MetadataStorepublic void setWellReagentRef(java.lang.String reagent,
int plateIndex,
int wellIndex)
setWellReagentRef in interface ome.xml.meta.MetadataStorepublic void setWellRow(ome.xml.model.primitives.NonNegativeInteger row,
int plateIndex,
int wellIndex)
setWellRow in interface ome.xml.meta.MetadataStorepublic void setWellSampleID(java.lang.String id,
int plateIndex,
int wellIndex,
int wellSampleIndex)
setWellSampleID in interface ome.xml.meta.MetadataStorepublic void setWellSampleImageRef(java.lang.String image,
int plateIndex,
int wellIndex,
int wellSampleIndex)
setWellSampleImageRef in interface ome.xml.meta.MetadataStorepublic void setWellSampleIndex(ome.xml.model.primitives.NonNegativeInteger index,
int plateIndex,
int wellIndex,
int wellSampleIndex)
setWellSampleIndex in interface ome.xml.meta.MetadataStorepublic void setWellSamplePositionX(ome.units.quantity.Length positionX,
int plateIndex,
int wellIndex,
int wellSampleIndex)
setWellSamplePositionX in interface ome.xml.meta.MetadataStorepublic void setWellSamplePositionY(ome.units.quantity.Length positionY,
int plateIndex,
int wellIndex,
int wellSampleIndex)
setWellSamplePositionY in interface ome.xml.meta.MetadataStorepublic void setWellSampleTimepoint(ome.xml.model.primitives.Timestamp timepoint,
int plateIndex,
int wellIndex,
int wellSampleIndex)
setWellSampleTimepoint in interface ome.xml.meta.MetadataStorepublic void setXMLAnnotationID(java.lang.String id,
int XMLAnnotationIndex)
setXMLAnnotationID in interface ome.xml.meta.MetadataStorepublic void setXMLAnnotationNamespace(java.lang.String namespace,
int XMLAnnotationIndex)
setXMLAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setXMLAnnotationValue(java.lang.String value,
int XMLAnnotationIndex)
setXMLAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setXMLAnnotationAnnotator(java.lang.String value,
int index)
setXMLAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setXMLAnnotationAnnotationRef(java.lang.String annotation,
int XMLAnnotationIndex,
int annotationRefIndex)
setXMLAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setXMLAnnotationDescription(java.lang.String description,
int XMLAnnotationIndex)
setXMLAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setBooleanAnnotationAnnotationRef(java.lang.String annotation,
int booleanAnnotationIndex,
int annotationRefIndex)
setBooleanAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setBooleanAnnotationDescription(java.lang.String description,
int booleanAnnotationIndex)
setBooleanAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setBooleanAnnotationAnnotator(java.lang.String value,
int index)
setBooleanAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setCommentAnnotationAnnotationRef(java.lang.String annotation,
int commentAnnotationIndex,
int annotationRefIndex)
setCommentAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setCommentAnnotationDescription(java.lang.String description,
int commentAnnotationIndex)
setCommentAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setDoubleAnnotationAnnotationRef(java.lang.String annotation,
int doubleAnnotationIndex,
int annotationRefIndex)
setDoubleAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setDoubleAnnotationDescription(java.lang.String description,
int doubleAnnotationIndex)
setDoubleAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setDoubleAnnotationAnnotator(java.lang.String value,
int index)
setDoubleAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setFileAnnotationAnnotationRef(java.lang.String annotation,
int fileAnnotationIndex,
int annotationRefIndex)
setFileAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setFileAnnotationDescription(java.lang.String description,
int fileAnnotationIndex)
setFileAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setFileAnnotationAnnotator(java.lang.String value,
int index)
setFileAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setListAnnotationDescription(java.lang.String description,
int listAnnotationIndex)
setListAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setListAnnotationAnnotator(java.lang.String value,
int index)
setListAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setLongAnnotationAnnotationRef(java.lang.String annotation,
int longAnnotationIndex,
int annotationRefIndex)
setLongAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setLongAnnotationDescription(java.lang.String description,
int longAnnotationIndex)
setLongAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setLongAnnotationAnnotator(java.lang.String value,
int XMLAnnotationIndex)
setLongAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setMapAnnotationAnnotationRef(java.lang.String annotation,
int mapAnnotationIndex,
int annotationRefIndex)
setMapAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setMapAnnotationAnnotator(java.lang.String annotator,
int mapAnnotationIndex)
setMapAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setMapAnnotationDescription(java.lang.String description,
int mapAnnotationIndex)
setMapAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setMapAnnotationID(java.lang.String id,
int mapAnnotationIndex)
setMapAnnotationID in interface ome.xml.meta.MetadataStorepublic void setMapAnnotationNamespace(java.lang.String namespace,
int mapAnnotationIndex)
setMapAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setMapAnnotationValue(java.util.List<ome.xml.model.MapPair> value,
int mapAnnotationIndex)
setMapAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setTagAnnotationAnnotationRef(java.lang.String annotation,
int tagAnnotationIndex,
int annotationRefIndex)
setTagAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setTagAnnotationDescription(java.lang.String description,
int tagAnnotationIndex)
setTagAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setTagAnnotationID(java.lang.String id,
int tagAnnotationIndex)
setTagAnnotationID in interface ome.xml.meta.MetadataStorepublic void setTagAnnotationNamespace(java.lang.String namespace,
int tagAnnotationIndex)
setTagAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setTagAnnotationAnnotator(java.lang.String value,
int index)
setTagAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setTagAnnotationValue(java.lang.String value,
int tagAnnotationIndex)
setTagAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setTermAnnotationAnnotationRef(java.lang.String annotation,
int termAnnotationIndex,
int annotationRefIndex)
setTermAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setTermAnnotationDescription(java.lang.String description,
int termAnnotationIndex)
setTermAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setTermAnnotationID(java.lang.String id,
int termAnnotationIndex)
setTermAnnotationID in interface ome.xml.meta.MetadataStorepublic void setTermAnnotationNamespace(java.lang.String namespace,
int termAnnotationIndex)
setTermAnnotationNamespace in interface ome.xml.meta.MetadataStorepublic void setTermAnnotationAnnotator(java.lang.String value,
int index)
setTermAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setTermAnnotationValue(java.lang.String value,
int termAnnotationIndex)
setTermAnnotationValue in interface ome.xml.meta.MetadataStorepublic void setTimestampAnnotationAnnotationRef(java.lang.String annotation,
int timestampAnnotationIndex,
int annotationRefIndex)
setTimestampAnnotationAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setTimestampAnnotationDescription(java.lang.String description,
int timestampAnnotationIndex)
setTimestampAnnotationDescription in interface ome.xml.meta.MetadataStorepublic void setTimestampAnnotationAnnotator(java.lang.String value,
int index)
setTimestampAnnotationAnnotator in interface ome.xml.meta.MetadataStorepublic void setPlateFieldIndex(ome.xml.model.primitives.NonNegativeInteger fieldIndex,
int plateIndex)
setPlateFieldIndex in interface ome.xml.meta.MetadataStorepublic void setBinaryFileBinData(byte[] binData,
int fileAnnotationIndex)
setBinaryFileBinData in interface ome.xml.meta.MetadataStorepublic void setBinaryFileBinDataBigEndian(java.lang.Boolean isBigEndian,
int fileAnnotationIndex)
setBinaryFileBinDataBigEndian in interface ome.xml.meta.MetadataStorepublic void setBinaryFileBinDataCompression(ome.xml.model.enums.Compression compression,
int fileAnnotationIndex)
setBinaryFileBinDataCompression in interface ome.xml.meta.MetadataStorepublic void setBinaryFileBinDataLength(ome.xml.model.primitives.NonNegativeLong length,
int fileAnnotationIndex)
setBinaryFileBinDataLength in interface ome.xml.meta.MetadataStorepublic void setBinaryFileFileName(java.lang.String fileName,
int fileAnnotationIndex)
setBinaryFileFileName in interface ome.xml.meta.MetadataStorepublic void setBinaryFileMIMEType(java.lang.String mimeType,
int fileAnnotationIndex)
setBinaryFileMIMEType in interface ome.xml.meta.MetadataStorepublic void setBinaryFileSize(ome.xml.model.primitives.NonNegativeLong size,
int fileAnnotationIndex)
setBinaryFileSize in interface ome.xml.meta.MetadataStorepublic void setDatasetImageRef(java.lang.String image,
int datasetIndex,
int imageRefIndex)
setDatasetImageRef in interface ome.xml.meta.MetadataStorepublic void setEllipseFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setEllipseFillRule in interface ome.xml.meta.MetadataStorepublic void setEllipseFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setEllipseFontFamily in interface ome.xml.meta.MetadataStorepublic void setEllipseFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setEllipseFontStyle in interface ome.xml.meta.MetadataStorepublic void setEllipseLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setEllipseLocked in interface ome.xml.meta.MetadataStorepublic void setExperimenterGroupAnnotationRef(java.lang.String annotation,
int experimenterGroupIndex,
int annotationRefIndex)
setExperimenterGroupAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setExperimenterGroupExperimenterRef(java.lang.String experimenter,
int experimenterGroupIndex,
int experimenterRefIndex)
setExperimenterGroupExperimenterRef in interface ome.xml.meta.MetadataStorepublic void setLabelFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setLabelFillRule in interface ome.xml.meta.MetadataStorepublic void setLabelFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setLabelFontFamily in interface ome.xml.meta.MetadataStorepublic void setLabelFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setLabelFontStyle in interface ome.xml.meta.MetadataStorepublic void setLabelLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setLabelLocked in interface ome.xml.meta.MetadataStorepublic void setLineFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setLineFillRule in interface ome.xml.meta.MetadataStorepublic void setLineFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setLineFontFamily in interface ome.xml.meta.MetadataStorepublic void setLineFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setLineFontStyle in interface ome.xml.meta.MetadataStorepublic void setLineLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setLineLocked in interface ome.xml.meta.MetadataStorepublic void setLineMarkerEnd(ome.xml.model.enums.Marker markerEnd,
int ROIIndex,
int shapeIndex)
setLineMarkerEnd in interface ome.xml.meta.MetadataStorepublic void setLineMarkerStart(ome.xml.model.enums.Marker markerStart,
int ROIIndex,
int shapeIndex)
setLineMarkerStart in interface ome.xml.meta.MetadataStorepublic void setMaskFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setMaskFillRule in interface ome.xml.meta.MetadataStorepublic void setMaskFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setMaskFontFamily in interface ome.xml.meta.MetadataStorepublic void setMaskFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setMaskFontStyle in interface ome.xml.meta.MetadataStorepublic void setMaskLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setMaskLocked in interface ome.xml.meta.MetadataStorepublic void setPointFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setPointFillRule in interface ome.xml.meta.MetadataStorepublic void setPointFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setPointFontFamily in interface ome.xml.meta.MetadataStorepublic void setPointFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setPointFontStyle in interface ome.xml.meta.MetadataStorepublic void setPointLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setPointLocked in interface ome.xml.meta.MetadataStorepublic void setPolygonFillColor(ome.xml.model.primitives.Color fillColor,
int ROIIndex,
int shapeIndex)
setPolygonFillColor in interface ome.xml.meta.MetadataStorepublic void setPolygonFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setPolygonFillRule in interface ome.xml.meta.MetadataStorepublic void setPolygonFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setPolygonFontFamily in interface ome.xml.meta.MetadataStorepublic void setPolygonFontSize(ome.units.quantity.Length fontSize,
int ROIIndex,
int shapeIndex)
setPolygonFontSize in interface ome.xml.meta.MetadataStorepublic void setPolygonFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setPolygonFontStyle in interface ome.xml.meta.MetadataStorepublic void setPolygonID(java.lang.String id,
int ROIIndex,
int shapeIndex)
setPolygonID in interface ome.xml.meta.MetadataStorepublic void setPolygonLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setPolygonLocked in interface ome.xml.meta.MetadataStorepublic void setPolygonStrokeColor(ome.xml.model.primitives.Color strokeColor,
int ROIIndex,
int shapeIndex)
setPolygonStrokeColor in interface ome.xml.meta.MetadataStorepublic void setPolygonStrokeDashArray(java.lang.String strokeDashArray,
int ROIIndex,
int shapeIndex)
setPolygonStrokeDashArray in interface ome.xml.meta.MetadataStorepublic void setPolygonStrokeWidth(ome.units.quantity.Length strokeWidth,
int ROIIndex,
int shapeIndex)
setPolygonStrokeWidth in interface ome.xml.meta.MetadataStorepublic void setPolygonText(java.lang.String text,
int ROIIndex,
int shapeIndex)
setPolygonText in interface ome.xml.meta.MetadataStorepublic void setPolygonTheC(ome.xml.model.primitives.NonNegativeInteger theC,
int ROIIndex,
int shapeIndex)
setPolygonTheC in interface ome.xml.meta.MetadataStorepublic void setPolygonTheT(ome.xml.model.primitives.NonNegativeInteger theT,
int ROIIndex,
int shapeIndex)
setPolygonTheT in interface ome.xml.meta.MetadataStorepublic void setPolygonTheZ(ome.xml.model.primitives.NonNegativeInteger theZ,
int ROIIndex,
int shapeIndex)
setPolygonTheZ in interface ome.xml.meta.MetadataStorepublic void setPolygonTransform(ome.xml.model.AffineTransform transform,
int ROIIndex,
int shapeIndex)
setPolygonTransform in interface ome.xml.meta.MetadataStorepublic void setPolygonPoints(java.lang.String points,
int ROIIndex,
int shapeIndex)
setPolygonPoints in interface ome.xml.meta.MetadataStorepublic void setPolylineFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setPolylineFillRule in interface ome.xml.meta.MetadataStorepublic void setPolylineFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setPolylineFontFamily in interface ome.xml.meta.MetadataStorepublic void setPolylineFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setPolylineFontStyle in interface ome.xml.meta.MetadataStorepublic void setPolylineLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setPolylineLocked in interface ome.xml.meta.MetadataStorepublic void setPolylineMarkerEnd(ome.xml.model.enums.Marker markerEnd,
int ROIIndex,
int shapeIndex)
setPolylineMarkerEnd in interface ome.xml.meta.MetadataStorepublic void setPolylineMarkerStart(ome.xml.model.enums.Marker markerStart,
int ROIIndex,
int shapeIndex)
setPolylineMarkerStart in interface ome.xml.meta.MetadataStorepublic void setProjectDatasetRef(java.lang.String dataset,
int projectIndex,
int datasetRefIndex)
setProjectDatasetRef in interface ome.xml.meta.MetadataStorepublic void setRectangleFillRule(ome.xml.model.enums.FillRule fillRule,
int ROIIndex,
int shapeIndex)
setRectangleFillRule in interface ome.xml.meta.MetadataStorepublic void setRectangleFontFamily(ome.xml.model.enums.FontFamily fontFamily,
int ROIIndex,
int shapeIndex)
setRectangleFontFamily in interface ome.xml.meta.MetadataStorepublic void setRectangleFontStyle(ome.xml.model.enums.FontStyle fontStyle,
int ROIIndex,
int shapeIndex)
setRectangleFontStyle in interface ome.xml.meta.MetadataStorepublic void setRectangleLocked(java.lang.Boolean locked,
int ROIIndex,
int shapeIndex)
setRectangleLocked in interface ome.xml.meta.MetadataStorepublic void setWellType(java.lang.String type,
int plateIndex,
int wellIndex)
setWellType in interface ome.xml.meta.MetadataStorepublic void setRightsRightsHeld(java.lang.String value)
setRightsRightsHeld in interface ome.xml.meta.MetadataStorepublic void setRightsRightsHolder(java.lang.String value)
setRightsRightsHolder in interface ome.xml.meta.MetadataStorepublic void setDetectorAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int detectorIndex,
int annotationRefIndex)
setDetectorAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setDichroicAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int dichroicIndex,
int annotationRefIndex)
setDichroicAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setEllipseAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setEllipseAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setFilamentAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex)
setFilamentAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setFilterAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int filterIndex,
int annotationRefIndex)
setFilterAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setGenericExcitationSourceAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex)
setGenericExcitationSourceAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setInstrumentAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int annotationRefIndex)
setInstrumentAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setLabelAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setLabelAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setLaserAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex)
setLaserAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setLightEmittingDiodeAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int lightSourceIndex,
int annotationRefIndex)
setLightEmittingDiodeAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setLightPathAnnotationRef(java.lang.String annotation,
int imageIndex,
int channelIndex,
int annotationRefIndex)
setLightPathAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setLineAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setLineAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setMaskAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setMaskAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setObjectiveAnnotationRef(java.lang.String annotation,
int instrumentIndex,
int objectiveIndex,
int annotationRefIndex)
setObjectiveAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setPointAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setPointAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setPolygonAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setPolygonAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setPolylineAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setPolylineAnnotationRef in interface ome.xml.meta.MetadataStorepublic void setRectangleAnnotationRef(java.lang.String annotation,
int ROIIndex,
int shapeIndex,
int annotationRefIndex)
setRectangleAnnotationRef in interface ome.xml.meta.MetadataStoreprotected void ignoreMissing(java.lang.String method,
java.lang.Object... args)
protected void ignoreUnneeded(java.lang.String method,
java.lang.Object... args)
protected void ignoreUnsupported(java.lang.String method,
java.lang.Object... args)
protected void ignoreInsecure(java.lang.String method,
java.lang.Object... args)
protected void ignoreAnnotator(java.lang.String method,
java.lang.Object... args)
OmeroJava API
Version: 5.4.4-ice35-b82
Copyright © 2018 The University of Dundee & Open Microscopy Environment. All Rights Reserved.