Uses of Class
ome.util.PixelData

Packages that use PixelData

Package	Description
ome.formats.importer
ome.io.bioformats
ome.io.nio	New Input/Output handling for the OMERO server This includes interfaces/classes for the input and output handling of data within the OMERO server.
ome.services.roi
omeis.providers.re.data	Provides classes needed to define XY planes within a dynamic 3D context.

Uses of PixelData in ome.formats.importer

Methods in ome.formats.importer that return PixelData

Modifier and Type	Method and Description
PixelData	OMEROWrapper.openPlane2D(java.lang.String id, int planeNumber, byte[] buf) Obtains an object which represents a given sub-image of a plane within the file.
PixelData	OMEROWrapper.openPlane2D(java.lang.String id, int planeNumber, byte[] buf, int x, int y, int w, int h) Obtains an object which represents a given sub-image of a plane within the file.

Uses of PixelData in ome.io.bioformats

Methods in ome.io.bioformats that return PixelData

Modifier and Type	Method and Description
PixelData	BfPixelBuffer.getCol(java.lang.Integer x, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	BfPyramidPixelBuffer.getCol(java.lang.Integer x, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	BfPixelBuffer.getHypercube(java.util.List<java.lang.Integer> offset, java.util.List<java.lang.Integer> size, java.util.List<java.lang.Integer> step)
PixelData	BfPyramidPixelBuffer.getHypercube(java.util.List<java.lang.Integer> offset, java.util.List<java.lang.Integer> size, java.util.List<java.lang.Integer> step)
PixelData	BfPixelBuffer.getPlane(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	BfPyramidPixelBuffer.getPlane(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	BfPixelBuffer.getPlaneRegion(java.lang.Integer x, java.lang.Integer y, java.lang.Integer width, java.lang.Integer height, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer stride)
PixelData	BfPyramidPixelBuffer.getPlaneRegion(java.lang.Integer x, java.lang.Integer y, java.lang.Integer width, java.lang.Integer height, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer stride)
PixelData	BfPixelBuffer.getRegion(java.lang.Integer size, java.lang.Long offset)
PixelData	BfPyramidPixelBuffer.getRegion(java.lang.Integer size, java.lang.Long offset)
PixelData	BfPixelBuffer.getRow(java.lang.Integer y, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	BfPyramidPixelBuffer.getRow(java.lang.Integer y, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	BfPixelBuffer.getStack(java.lang.Integer c, java.lang.Integer t)
PixelData	BfPyramidPixelBuffer.getStack(java.lang.Integer c, java.lang.Integer t)
PixelData	BfPixelBuffer.getTile(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer x, java.lang.Integer y, java.lang.Integer w, java.lang.Integer h)
PixelData	BfPyramidPixelBuffer.getTile(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer x, java.lang.Integer y, java.lang.Integer w, java.lang.Integer h)
PixelData	BfPixelBuffer.getTimepoint(java.lang.Integer t)
PixelData	BfPyramidPixelBuffer.getTimepoint(java.lang.Integer t)

Uses of PixelData in ome.io.nio

Subclasses of PixelData in ome.io.nio

Modifier and Type	Class and Description
class	ReorderedPixelData Represents a block of pixel data that needs to be re-ordered in accordance with a DeltaVision file.

Methods in ome.io.nio that return PixelData

Modifier and Type	Method and Description
PixelData	InMemoryPlanarPixelBuffer.getCol(java.lang.Integer x, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	PixelBuffer.getCol(java.lang.Integer x, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t) Retrieves a particular column from this pixel buffer.
PixelData	RomioPixelBuffer.getCol(java.lang.Integer x, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t) Implemented as specified by PixelBuffer I/F.
PixelData	InMemoryPlanarPixelBuffer.getHypercube(java.util.List<java.lang.Integer> offset, java.util.List<java.lang.Integer> size, java.util.List<java.lang.Integer> step)
PixelData	PixelBuffer.getHypercube(java.util.List<java.lang.Integer> offset, java.util.List<java.lang.Integer> size, java.util.List<java.lang.Integer> step) Retrieves a hypercube from this pixel buffer.
PixelData	RomioPixelBuffer.getHypercube(java.util.List<java.lang.Integer> offset, java.util.List<java.lang.Integer> size, java.util.List<java.lang.Integer> step) Implemented as specified by PixelBuffer I/F.
PixelData	InMemoryPlanarPixelBuffer.getPlane(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	PixelBuffer.getPlane(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t) Retrieves a particular 2D image plane from this pixel buffer.
PixelData	RomioPixelBuffer.getPlane(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t) Implemented as specified by PixelBuffer I/F.
PixelData	InMemoryPlanarPixelBuffer.getPlaneRegion(java.lang.Integer x, java.lang.Integer y, java.lang.Integer width, java.lang.Integer height, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer stride)
PixelData	PixelBuffer.getPlaneRegion(java.lang.Integer x, java.lang.Integer y, java.lang.Integer width, java.lang.Integer height, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer stride) Retrieves a particular region of a 2D image plane from this pixel buffer.
PixelData	RomioPixelBuffer.getPlaneRegion(java.lang.Integer x, java.lang.Integer y, java.lang.Integer width, java.lang.Integer height, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer stride) Implemented as specified by ByteBuffer I/F.
PixelData	InMemoryPlanarPixelBuffer.getRegion(java.lang.Integer size, java.lang.Long offset)
PixelData	PixelBuffer.getRegion(java.lang.Integer size, java.lang.Long offset) Retrieves a region from this pixel buffer.
PixelData	RomioPixelBuffer.getRegion(java.lang.Integer size, java.lang.Long offset) Implemented as specified by PixelBuffer I/F.
PixelData	InMemoryPlanarPixelBuffer.getRow(java.lang.Integer y, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t)
PixelData	PixelBuffer.getRow(java.lang.Integer y, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t) Retrieves a particular row or scanline from this pixel buffer.
PixelData	RomioPixelBuffer.getRow(java.lang.Integer y, java.lang.Integer z, java.lang.Integer c, java.lang.Integer t) Implemented as specified by PixelBuffer I/F.
PixelData	InMemoryPlanarPixelBuffer.getStack(java.lang.Integer c, java.lang.Integer t)
PixelData	PixelBuffer.getStack(java.lang.Integer c, java.lang.Integer t) Retrieves the the entire number of optical sections for a single wavelength or channel at a particular timepoint in this pixel buffer.
PixelData	RomioPixelBuffer.getStack(java.lang.Integer c, java.lang.Integer t) Implemented as specified by PixelBuffer I/F.
PixelData	InMemoryPlanarPixelBuffer.getTile(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer x, java.lang.Integer y, java.lang.Integer w, java.lang.Integer h)
PixelData	PixelBuffer.getTile(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer x, java.lang.Integer y, java.lang.Integer w, java.lang.Integer h) Retrieves a tile from this pixel buffer.
PixelData	RomioPixelBuffer.getTile(java.lang.Integer z, java.lang.Integer c, java.lang.Integer t, java.lang.Integer x, java.lang.Integer y, java.lang.Integer w, java.lang.Integer h)
PixelData	InMemoryPlanarPixelBuffer.getTimepoint(java.lang.Integer t)
PixelData	PixelBuffer.getTimepoint(java.lang.Integer t) Retrieves the entire number of optical sections for all wavelengths or channels at a particular timepoint in this pixel buffer.
PixelData	RomioPixelBuffer.getTimepoint(java.lang.Integer t) Implemented as specified by PixelBuffer I/F.

Uses of PixelData in ome.services.roi

Methods in ome.services.roi that return PixelData

Modifier and Type	Method and Description
PixelData	PixelData.getPlane(PixelBuffer buf, int z, int c, int t) Returns the PixelData for plane given its z, c and t as well as a PixelBuffer

Uses of PixelData in omeis.providers.re.data

Methods in omeis.providers.re.data that return PixelData

Modifier and Type	Method and Description
PixelData	Plane2D.getData() Returns the pixel data that is used to back this Plane.

Constructors in omeis.providers.re.data with parameters of type PixelData

Constructor and Description
Plane2D(PlaneDef pDef, Pixels pixels, PixelData data) Constructor that sub-classes must call.