MicrobeamManipulation (OMERO API)

java.lang.Object
- ome.model.experiment.MicrobeamManipulation

All Implemented Interfaces:

Serializable, IMutable, IObject, Filterable
```
@Entity
 @Indexed(index="FullText")
 @ClassBridge(name="details",
             impl=DetailsFieldBridge.class,
             index=UN_TOKENIZED,
             store=NO)
public class MicrobeamManipulation
extends Object
implements Serializable, IObject, IMutable
```
These filter definitions are used by the security system to eliminate non-readable objects from queries. The regular user does not need to worry about them, as they will be injected directly into the SQL (not HQL)

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class MicrobeamManipulation.Details

Nested Classes
Modifier and Type	Class and Description
`static class`	`MicrobeamManipulation.Details`

Field Summary

Fields
Modifier and Type	Field and Description
`protected Map<String,Object>`	`_dynamicFields`
`protected boolean`	`_loaded`
`protected String`	`description`
`static String`	`DESCRIPTION`
`protected Details`	`details`
`static String`	`DETAILS`
`static String`	`EVENT_FILTER`
`static String`	`EVENT_FILTER_LIGHTSOURCESETTINGS`
`protected Experiment`	`experiment`
`static String`	`EXPERIMENT`
`static Set<String>`	`FIELDS`
`static String`	`GROUP_FILTER`
`static String`	`GROUP_FILTER_LIGHTSOURCESETTINGS`
`protected Long`	`id`
`static String`	`ID`
`protected Set<LightSettings>`	`lightSourceSettings`
`static String`	`LIGHTSOURCESETTINGS`
`static String`	`OWNER_FILTER`
`static String`	`OWNER_FILTER_LIGHTSOURCESETTINGS`
`static String`	`PERMS_FILTER`
`static String`	`PERMS_FILTER_LIGHTSOURCESETTINGS`
`protected MicrobeamManipulationType`	`type`
`static String`	`TYPE`
`protected Integer`	`version`
`static String`	`VERSION`

Constructor Summary

Constructors
Modifier	Constructor and Description
	`MicrobeamManipulation()`
`protected`	`MicrobeamManipulation(Long id)`
	`MicrobeamManipulation(Long id, boolean loaded)` Main constructor.
	`MicrobeamManipulation(MicrobeamManipulationType _type, Experiment _experiment)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`acceptFilter(Filter __filter)`
`void`	`addLightSettings(LightSettings target)` use instead of setLightSourceSettings .
`void`	`addLightSettingsSet(Collection<LightSettings> targets)` use like addLightSettings.
`void`	`clearLightSourceSettings()` clears the set.
`<E> List<E>`	`collectLightSourceSettings(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.acquisition.LightSettings while collecting the results.
`protected void`	`errorIfUnloaded()`
`Set<String>`	`fields()` returns a Set of field names that belong to this class
`String`	`getDescription()` Simple field ome.model.experiment.MicrobeamManipulation.description (java.lang.String)
`Details`	`getDetails()` The details of this object correspond to low-level system information.
`Experiment`	`getExperiment()` Many-to-one field ome.model.experiment.MicrobeamManipulation.experiment (ome.model.experiment.Experiment)
`GraphHolder`	`getGraphHolder()` retrieves the `GraphHolder` for this entity.
`Long`	`getId()` The DB unique identifier for this object.
`protected Set<LightSettings>`	`getLightSourceSettings()` returns lightSourceSettings .
`MicrobeamManipulationType`	`getType()` Many-to-one field ome.model.experiment.MicrobeamManipulation.type (ome.model.enums.MicrobeamManipulationType)
`Integer`	`getVersion()` This version number is controlled by the database for optimisitic locking.
`boolean`	`isLoaded()` transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
`boolean`	`isValid()` calls the class-specific validator for this instance and returns the value from `Validation.isValid()`
`Iterator<LightSettings>`	`iterateLightSourceSettings()` should be used rather than accessing the lightSourceSettings set directly.
`MicrobeamManipulation`	`newInstance()`
`MicrobeamManipulation`	`proxy()`
`void`	`putAt(String field, Object value)` stores a value in this instance.
`void`	`removeLightSettings(LightSettings target)` removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSettings
`void`	`removeLightSettingsSet(Collection<LightSettings> targets)` use like removeLightSettings
`Object`	`retrieve(String field)` retrieves a value from this instance.
`void`	`setDescription(String description)`
`protected void`	`setDetails(Details details)` Use the `Details.copy(ome.model.internal.Details)` or `Details.shallowCopy(ome.model.internal.Details)` methods to set the `MicrobeamManipulation.Details` instance instead.
`void`	`setExperiment(Experiment experiment)`
`void`	`setId(Long id)` usually unneeded.
`protected void`	`setLightSourceSettings(Set<LightSettings> lightSourceSettings)` setter for lightSourceSettings should be avoided.
`void`	`setType(MicrobeamManipulationType type)`
`void`	`setVersion(Integer version)` use with caution.
`int`	`sizeOfLightSourceSettings()` returns the size of lightSourceSettings.
`protected void`	`throwNullCollectionException(String propertyName)`
`String`	`toString()`
`void`	`unload()` set the loaded field to false, and set all non-ID fields to null.
`Collection<LightSettings>`	`unmodifiableLightSourceSettings()` Returns an unmodifiable collection-view
`Validation`	`validate()` calls the class-specific validator for this instance and returns the `Validation` object.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - OWNER_FILTER
```
public static final String OWNER_FILTER
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER
```
public static final String GROUP_FILTER
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER
```
public static final String EVENT_FILTER
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER
```
public static final String PERMS_FILTER
```
    See Also:
    
    Constant Field Values
  - ID
```
public static final String ID
```
    See Also:
    
    Constant Field Values
  - id
```
protected Long id
```
  - VERSION
```
public static final String VERSION
```
    See Also:
    
    Constant Field Values
  - version
```
protected Integer version
```
  - type
```
protected MicrobeamManipulationType type
```
  - lightSourceSettings
```
protected Set<LightSettings> lightSourceSettings
```
  - OWNER_FILTER_LIGHTSOURCESETTINGS
```
public static final String OWNER_FILTER_LIGHTSOURCESETTINGS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_LIGHTSOURCESETTINGS
```
public static final String GROUP_FILTER_LIGHTSOURCESETTINGS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_LIGHTSOURCESETTINGS
```
public static final String EVENT_FILTER_LIGHTSOURCESETTINGS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_LIGHTSOURCESETTINGS
```
public static final String PERMS_FILTER_LIGHTSOURCESETTINGS
```
    See Also:
    
    Constant Field Values
  - experiment
```
protected Experiment experiment
```
  - description
```
protected String description
```
  - details
```
protected Details details
```
  - TYPE
```
public static final String TYPE
```
    See Also:
    
    Constant Field Values
  - LIGHTSOURCESETTINGS
```
public static final String LIGHTSOURCESETTINGS
```
    See Also:
    
    Constant Field Values
  - EXPERIMENT
```
public static final String EXPERIMENT
```
    See Also:
    
    Constant Field Values
  - DESCRIPTION
```
public static final String DESCRIPTION
```
    See Also:
    
    Constant Field Values
  - DETAILS
```
public static final String DETAILS
```
    See Also:
    
    Constant Field Values
  - FIELDS
```
public static final Set<String> FIELDS
```
  - _dynamicFields
```
protected Map<String,Object> _dynamicFields
```
  - _loaded
```
protected boolean _loaded
```
- Constructor Detail
  - MicrobeamManipulation
```
public MicrobeamManipulation()
```
  - MicrobeamManipulation
```
protected MicrobeamManipulation(Long id)
```
  - MicrobeamManipulation
```
public MicrobeamManipulation(Long id,
                             boolean loaded)
```
    Main constructor.
  - MicrobeamManipulation
```
public MicrobeamManipulation(MicrobeamManipulationType _type,
                             Experiment _experiment)
```
- Method Detail
  - getId
```
@DocumentId
public Long getId()
```
    The DB unique identifier for this object. You are not responsible for setting the id; however, it can be useful for creating "unloaded" versions of your objects. Each top-level entity contains an id field of type long. For all objects returned from the server, this value will be non-null, which doesn't necessarily hold for the other fields.
    
    Specified by:
    
    getId in interface IObject
    
    Returns:
    
    Long primary key. May be null.
  - setId
```
public void setId(Long id)
```
    Description copied from interface: IObject
    
    usually unneeded. Ids are managed by the backend.
    
    Specified by:
    
    setId in interface IObject
    
    Parameters:
    
    id - Long value for this id.
  - getVersion
```
public Integer getVersion()
```
    This version number is controlled by the database for optimisitic locking.
    
    Specified by:
    
    getVersion in interface IMutable
  - setVersion
```
public void setVersion(Integer version)
```
    Description copied from interface: IMutable
    
    use with caution. In general, the version should only be altered by the backend. In the best case, an exception will be thrown for a version not equal to the current DB value. In the worst (though rare) case, the new version could match the database, and override optimistic lock checks that are supposed to prevent data loss.
    
    Specified by:
    
    setVersion in interface IMutable
    
    Parameters:
    
    version - Value for this objects version.
  - getType
```
public MicrobeamManipulationType getType()
```
    Many-to-one field ome.model.experiment.MicrobeamManipulation.type (ome.model.enums.MicrobeamManipulationType)
  - setType
```
public void setType(MicrobeamManipulationType type)
```
  - getLightSourceSettings
```
protected Set<LightSettings> getLightSourceSettings()
```
    returns lightSourceSettings . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.experiment.MicrobeamManipulation.lightSourceSettings (ome.model.acquisition.LightSettings)
  - setLightSourceSettings
```
protected void setLightSourceSettings(Set<LightSettings> lightSourceSettings)
```
    setter for lightSourceSettings should be avoided. Does not fulfill normal semantics.
  - sizeOfLightSourceSettings
```
public int sizeOfLightSourceSettings()
```
    returns the size of lightSourceSettings. If less than zero, the Set was null.
  - iterateLightSourceSettings
```
public Iterator<LightSettings> iterateLightSourceSettings()
```
    should be used rather than accessing the lightSourceSettings set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfLightSourceSettings() is less than zero.
  - unmodifiableLightSourceSettings
```
public Collection<LightSettings> unmodifiableLightSourceSettings()
```
    Returns an unmodifiable collection-view
  - collectLightSourceSettings
```
public <E> List<E> collectLightSourceSettings(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.acquisition.LightSettings while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateLightSourceSettings() internally and so will return a value even if the underlying collection is null.
  - addLightSettings
```
public void addLightSettings(LightSettings target)
```
    use instead of setLightSourceSettings . Makes the necessary call on ome.model.acquisition.LightSettings as well.
  - addLightSettingsSet
```
public void addLightSettingsSet(Collection<LightSettings> targets)
```
    use like addLightSettings.
  - removeLightSettings
```
public void removeLightSettings(LightSettings target)
```
    removes a single element from this set and makes the inverse call on ome.model.acquisition.LightSettings
  - removeLightSettingsSet
```
public void removeLightSettingsSet(Collection<LightSettings> targets)
```
    use like removeLightSettings
  - clearLightSourceSettings
```
public void clearLightSourceSettings()
```
    clears the set.
  - getExperiment
```
public Experiment getExperiment()
```
    Many-to-one field ome.model.experiment.MicrobeamManipulation.experiment (ome.model.experiment.Experiment)
  - setExperiment
```
public void setExperiment(Experiment experiment)
```
  - getDescription
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getDescription()
```
    Simple field ome.model.experiment.MicrobeamManipulation.description (java.lang.String)
  - setDescription
```
public void setDescription(String description)
```
  - getDetails
```
public Details getDetails()
```
    The details of this object correspond to low-level system information. Owner, permissions, Details is always guaranteed to be non-null, unless the user actively nulls it. Every entity also contains a Detail reference, which doesn't refer to a separate table but rather to a collection of fields collected into a Hibernate "component" which is embedded in the object. HQL queries which refer to the Details component cannot directly fetch the entity like this: select o from Object join fetch o.details but rather each field of the Details instance must be explicitly joined: select o from Object join fetch o.details.owner It should also be noted that not all types have all the fields which are present on Details. For example, select e from Experimenter e join fetch e.details.owner will fail. Experimenter has no owner, for obvious reasons. Note: subclasses of this class will return a subclass of the Details type.
    
    Specified by:
    
    getDetails in interface IObject
  - setDetails
```
protected void setDetails(Details details)
```
    Use the Details.copy(ome.model.internal.Details) or Details.shallowCopy(ome.model.internal.Details) methods to set the MicrobeamManipulation.Details instance instead.
  - isValid
```
public boolean isValid()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the value from Validation.isValid()
    
    Specified by:
    
    isValid in interface IObject
  - validate
```
public Validation validate()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the Validation object.
    
    Specified by:
    
    validate in interface IObject
    
    Returns:
    
    Validation collecting parameter.
  - newInstance
```
public MicrobeamManipulation newInstance()
```
  - proxy
```
public MicrobeamManipulation proxy()
```
  - acceptFilter
```
public boolean acceptFilter(Filter __filter)
```
    Specified by:
    
    acceptFilter in interface Filterable
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - fields
```
public Set<String> fields()
```
    Description copied from interface: IObject
    
    returns a Set of field names that belong to this class
    
    Specified by:
    
    fields in interface IObject
  - retrieve
```
public Object retrieve(String field)
```
    Description copied from interface: IObject
    
    retrieves a value from this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be retrieved from a lazy-loaded map filled by calls to IObject.putAt(String, Object)
    
    Specified by:
    
    retrieve in interface IObject
  - putAt
```
public void putAt(String field,
                  Object value)
```
    Description copied from interface: IObject
    
    stores a value in this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be stored in a lazy-loaded map.
    
    Specified by:
    
    putAt in interface IObject
    
    Parameters:
    
    field - Field name
    
    value - Any object to be stored.
  - isLoaded
```
public boolean isLoaded()
```
    Description copied from interface: IObject
    
    transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
    
    Specified by:
    
    isLoaded in interface IObject
  - errorIfUnloaded
```
protected void errorIfUnloaded()
```
  - unload
```
public void unload()
```
    Description copied from interface: IObject
    
    set the loaded field to false, and set all non-ID fields to null. Subsequent calls to all accessors other than getId/setId will throw an ApiUsageException
    
    Specified by:
    
    unload in interface IObject
  - getGraphHolder
```
public final GraphHolder getGraphHolder()
```
    Description copied from interface: IObject
    
    retrieves the GraphHolder for this entity. If the GraphHolder has not been actively set, a new one will be instatiated.
    
    Specified by:
    
    getGraphHolder in interface IObject
    
    Returns:
    
    Non-null GraphHolder
  - throwNullCollectionException
```
protected void throwNullCollectionException(String propertyName)
```

Class MicrobeamManipulation

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

OWNER_FILTER

GROUP_FILTER

EVENT_FILTER

PERMS_FILTER

ID

id

VERSION

version

type

lightSourceSettings

OWNER_FILTER_LIGHTSOURCESETTINGS

GROUP_FILTER_LIGHTSOURCESETTINGS

EVENT_FILTER_LIGHTSOURCESETTINGS

PERMS_FILTER_LIGHTSOURCESETTINGS

experiment

description

details

TYPE

LIGHTSOURCESETTINGS

EXPERIMENT

DESCRIPTION

DETAILS

FIELDS

_dynamicFields

_loaded

Constructor Detail

MicrobeamManipulation

MicrobeamManipulation

MicrobeamManipulation

MicrobeamManipulation

Method Detail

getId

setId

getVersion

setVersion

getType

setType

getLightSourceSettings

setLightSourceSettings

sizeOfLightSourceSettings

iterateLightSourceSettings

unmodifiableLightSourceSettings

collectLightSourceSettings

addLightSettings

addLightSettingsSet

removeLightSettings

removeLightSettingsSet

clearLightSourceSettings

getExperiment

setExperiment

getDescription

setDescription

getDetails

setDetails

isValid

validate

newInstance

proxy

acceptFilter

toString

fields

retrieve

putAt

isLoaded

errorIfUnloaded

unload

getGraphHolder

throwNullCollectionException