Uses of Interface
ome.io.nio.PixelBuffer

Packages that use PixelBuffer

Package	Description
ome.io.bioformats
ome.io.nio	New Input/Output handling for the OMERO server This includes interfaces/classes for the input and output handling of data within the OMERO server.
ome.services.roi
omeis.providers.re	Red-Green-Blue (RGB) data structures and Image Rendering Service This package provides basic data structures to represent an RGB pixel set and provide a service for the rendering of this pixel set.
omeis.providers.re.data	Provides classes needed to define XY planes within a dynamic 3D context.
omeis.providers.re.metadata

Uses of PixelBuffer in ome.io.bioformats

Classes in ome.io.bioformats that implement PixelBuffer

Modifier and Type	Class and Description
class	BfPixelBuffer PixelBuffer implementation which uses Bio-Formats to read pixels data directly from original files.
class	BfPyramidPixelBuffer PixelBuffer implementation which uses Bio-Formats to read pixels data directly from original files.

Uses of PixelBuffer in ome.io.nio

Classes in ome.io.nio that implement PixelBuffer

Modifier and Type	Class and Description
class	InMemoryPlanarPixelBuffer Class implementation of the PixelBuffer interface for in memory planar pixel data.
class	RomioPixelBuffer Class implementation of the PixelBuffer interface for standard "proprietary" ROMIO/OMEIS data format.

Methods in ome.io.nio that return PixelBuffer

Modifier and Type	Method and Description
PixelBuffer	PixelsService._getPixelBuffer(Pixels pixels, boolean write)
PixelBuffer	PixelsService.createPixelBuffer(Pixels pixels) Creates a PixelBuffer for a given pixels set.
protected PixelBuffer	PixelsService.createRomioPixelBuffer(String pixelsFilePath, Pixels pixels, boolean allowModification) Helper method to properlty create a RomioPixelBuffer.
PixelBuffer	PixelsService.getPixelBuffer(Pixels pixels) Deprecated. In the future callers should use the more descriptive PixelsService.getPixelBuffer(Pixels, boolean).
PixelBuffer	PixelsService.getPixelBuffer(Pixels pixels, boolean write) Returns a pixel buffer for a given set of pixels.

Methods in ome.io.nio with parameters of type PixelBuffer

Modifier and Type	Method and Description
static int	Utils.forEachTile(TileLoopIteration iteration, PixelBuffer pixelBuffer, int tileWidth, int tileHeight) Iterates over every tile in a given pixel buffer based on the over arching dimensions and a requested maximum tile width and height.

Uses of PixelBuffer in ome.services.roi

Methods in ome.services.roi that return PixelBuffer

Modifier and Type	Method and Description
PixelBuffer	PixelData.getBuffer(long pix)

Methods in ome.services.roi with parameters of type PixelBuffer

Modifier and Type	Method and Description
double	PixelData.get(PixelBuffer buf, int x, int y, int z, int c, int t)
PixelData	PixelData.getPlane(PixelBuffer buf, int z, int c, int t) Returns the PixelData for plane given its z, c and t as well as a PixelBuffer

Uses of PixelBuffer in omeis.providers.re

Methods in omeis.providers.re that return PixelBuffer

Modifier and Type	Method and Description
PixelBuffer	Renderer.getPixels() Returns the object that allows to access the pixels raw data.

Methods in omeis.providers.re with parameters of type PixelBuffer

Modifier and Type	Method and Description
int[]	Renderer.renderAsPackedInt(PlaneDef pd, PixelBuffer newBuffer) Renders the data selected by pd according to the current rendering settings.

Constructors in omeis.providers.re with parameters of type PixelBuffer

Constructor and Description
Renderer(QuantumFactory quantumFactory, List<RenderingModel> renderingModels, Pixels pixelsObj, RenderingDef renderingDefObj, PixelBuffer bufferObj, List<File> luts) Creates a new instance to render the specified pixels set and get this new instance ready for rendering.

Uses of PixelBuffer in omeis.providers.re.data

Methods in omeis.providers.re.data with parameters of type PixelBuffer

Modifier and Type	Method and Description
static Plane2D	PlaneFactory.createPlane(PlaneDef planeDef, int channel, Pixels pixels, PixelBuffer buffer) Factory method to fetch plane data and create an object to access it.

Uses of PixelBuffer in omeis.providers.re.metadata

Methods in omeis.providers.re.metadata with parameters of type PixelBuffer

Modifier and Type	Method and Description
void	StatsFactory.computeLocationStats(Pixels metadata, PixelBuffer pixelsData, PlaneDef pd, int index) Helper object to determine the location of the pixels' values, the inputWindow i.e.