OmeroJava API
| Package | Description |
|---|---|
| ome.formats.importer | |
| ome.io.bioformats | |
| ome.io.nio |
New Input/Output handling for the OMERO server
This includes interfaces/classes for the input and output handling of data within
the OMERO server.
|
| omeis.providers.re.data |
Provides classes needed to define XY planes within a dynamic 3D context.
|
| Modifier and Type | Method and Description |
|---|---|
PixelData |
OMEROWrapper.openPlane2D(String id,
int planeNumber,
byte[] buf)
Obtains an object which represents a given sub-image of a plane within
the file.
|
PixelData |
OMEROWrapper.openPlane2D(String id,
int planeNumber,
byte[] buf,
int x,
int y,
int w,
int h)
Obtains an object which represents a given sub-image of a plane within
the file.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ReorderedPixelData
Represents a block of pixel data that needs to be re-ordered in accordance
with a DeltaVision file.
|
| Modifier and Type | Method and Description |
|---|---|
PixelData |
InMemoryPlanarPixelBuffer.getCol(Integer x,
Integer z,
Integer c,
Integer t) |
PixelData |
PixelBuffer.getCol(Integer x,
Integer z,
Integer c,
Integer t)
Retrieves a particular column from this pixel buffer.
|
PixelData |
RomioPixelBuffer.getCol(Integer x,
Integer z,
Integer c,
Integer t)
Implemented as specified by
PixelBuffer I/F. |
PixelData |
InMemoryPlanarPixelBuffer.getHypercube(List<Integer> offset,
List<Integer> size,
List<Integer> step) |
PixelData |
PixelBuffer.getHypercube(List<Integer> offset,
List<Integer> size,
List<Integer> step)
Retrieves a hypercube from this pixel buffer.
|
PixelData |
RomioPixelBuffer.getHypercube(List<Integer> offset,
List<Integer> size,
List<Integer> step)
Implemented as specified by
PixelBuffer I/F. |
PixelData |
InMemoryPlanarPixelBuffer.getPlane(Integer z,
Integer c,
Integer t) |
PixelData |
PixelBuffer.getPlane(Integer z,
Integer c,
Integer t)
Retrieves a particular 2D image plane from this pixel buffer.
|
PixelData |
RomioPixelBuffer.getPlane(Integer z,
Integer c,
Integer t)
Implemented as specified by
PixelBuffer I/F. |
PixelData |
InMemoryPlanarPixelBuffer.getPlaneRegion(Integer x,
Integer y,
Integer width,
Integer height,
Integer z,
Integer c,
Integer t,
Integer stride) |
PixelData |
PixelBuffer.getPlaneRegion(Integer x,
Integer y,
Integer width,
Integer height,
Integer z,
Integer c,
Integer t,
Integer stride)
Retrieves a particular region of a 2D image plane from this pixel buffer.
|
PixelData |
RomioPixelBuffer.getPlaneRegion(Integer x,
Integer y,
Integer width,
Integer height,
Integer z,
Integer c,
Integer t,
Integer stride)
Implemented as specified by
ByteBuffer I/F. |
PixelData |
InMemoryPlanarPixelBuffer.getRegion(Integer size,
Long offset) |
PixelData |
PixelBuffer.getRegion(Integer size,
Long offset)
Retrieves a region from this pixel buffer.
|
PixelData |
RomioPixelBuffer.getRegion(Integer size,
Long offset)
Implemented as specified by
PixelBuffer I/F. |
PixelData |
InMemoryPlanarPixelBuffer.getRow(Integer y,
Integer z,
Integer c,
Integer t) |
PixelData |
PixelBuffer.getRow(Integer y,
Integer z,
Integer c,
Integer t)
Retrieves a particular row or scanline from this pixel buffer.
|
PixelData |
RomioPixelBuffer.getRow(Integer y,
Integer z,
Integer c,
Integer t)
Implemented as specified by
PixelBuffer I/F. |
PixelData |
InMemoryPlanarPixelBuffer.getStack(Integer c,
Integer t) |
PixelData |
PixelBuffer.getStack(Integer c,
Integer t)
Retrieves the the entire number of optical sections for a single
wavelength or channel at a particular timepoint in this pixel buffer.
|
PixelData |
RomioPixelBuffer.getStack(Integer c,
Integer t)
Implemented as specified by
PixelBuffer I/F. |
PixelData |
InMemoryPlanarPixelBuffer.getTile(Integer z,
Integer c,
Integer t,
Integer x,
Integer y,
Integer w,
Integer h) |
PixelData |
PixelBuffer.getTile(Integer z,
Integer c,
Integer t,
Integer x,
Integer y,
Integer w,
Integer h)
Retrieves a tile from this pixel buffer.
|
PixelData |
RomioPixelBuffer.getTile(Integer z,
Integer c,
Integer t,
Integer x,
Integer y,
Integer w,
Integer h) |
PixelData |
InMemoryPlanarPixelBuffer.getTimepoint(Integer t) |
PixelData |
PixelBuffer.getTimepoint(Integer t)
Retrieves the entire number of optical sections for all
wavelengths or channels at a particular timepoint in this pixel buffer.
|
PixelData |
RomioPixelBuffer.getTimepoint(Integer t)
Implemented as specified by
PixelBuffer I/F. |
| Modifier and Type | Method and Description |
|---|---|
PixelData |
Plane2D.getData()
Returns the pixel data that is used to back this Plane.
|
| Constructor and Description |
|---|
Plane2D(PlaneDef pDef,
Pixels pixels,
PixelData data)
Constructor that sub-classes must call.
|
OmeroJava API
Version: 5.2.8-ice35-b57
Copyright © 2017 The University of Dundee & Open Microscopy Environment. All Rights Reserved.