Plate (OMERO API)

java.lang.Object
- ome.model.screen.Plate

All Implemented Interfaces:

Serializable, IAnnotated, IMutable, IObject, Filterable
```
@Entity
 @Indexed(index="FullText")
 @ClassBridge(name="details",
             impl=DetailsFieldBridge.class,
             index=UN_TOKENIZED,
             store=NO)
public class Plate
extends Object
implements Serializable, IObject, IMutable, IAnnotated
```
These filter definitions are used by the security system to eliminate non-readable objects from queries. The regular user does not need to worry about them, as they will be injected directly into the SQL (not HQL)

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class Plate.Details

Nested Classes
Modifier and Type	Class and Description
`static class`	`Plate.Details`

Field Summary

Fields
Modifier and Type	Field and Description
`protected Map<String,Object>`	`_dynamicFields`
`protected boolean`	`_loaded`
`protected Set<PlateAnnotationLink>`	`annotationLinks`
`static String`	`ANNOTATIONLINKS`
`static String`	`ANNOTATIONLINKSCOUNTPEROWNER`
`protected String`	`columnNamingConvention`
`static String`	`COLUMNNAMINGCONVENTION`
`protected Integer`	`columns`
`static String`	`COLUMNS`
`protected Integer`	`defaultSample`
`static String`	`DEFAULTSAMPLE`
`protected String`	`description`
`static String`	`DESCRIPTION`
`protected Details`	`details`
`static String`	`DETAILS`
`static String`	`EVENT_FILTER`
`static String`	`EVENT_FILTER_ANNOTATIONLINKS`
`static String`	`EVENT_FILTER_PLATEACQUISITIONS`
`static String`	`EVENT_FILTER_SCREENLINKS`
`static String`	`EVENT_FILTER_WELLS`
`protected String`	`externalIdentifier`
`static String`	`EXTERNALIDENTIFIER`
`static Set<String>`	`FIELDS`
`static String`	`GROUP_FILTER`
`static String`	`GROUP_FILTER_ANNOTATIONLINKS`
`static String`	`GROUP_FILTER_PLATEACQUISITIONS`
`static String`	`GROUP_FILTER_SCREENLINKS`
`static String`	`GROUP_FILTER_WELLS`
`protected Long`	`id`
`static String`	`ID`
`protected String`	`name`
`static String`	`NAME`
`static String`	`OWNER_FILTER`
`static String`	`OWNER_FILTER_ANNOTATIONLINKS`
`static String`	`OWNER_FILTER_PLATEACQUISITIONS`
`static String`	`OWNER_FILTER_SCREENLINKS`
`static String`	`OWNER_FILTER_WELLS`
`static String`	`PERMS_FILTER`
`static String`	`PERMS_FILTER_ANNOTATIONLINKS`
`static String`	`PERMS_FILTER_PLATEACQUISITIONS`
`static String`	`PERMS_FILTER_SCREENLINKS`
`static String`	`PERMS_FILTER_WELLS`
`protected Set<PlateAcquisition>`	`plateAcquisitions`
`static String`	`PLATEACQUISITIONS`
`protected String`	`rowNamingConvention`
`static String`	`ROWNAMINGCONVENTION`
`protected Integer`	`rows`
`static String`	`ROWS`
`protected Set<ScreenPlateLink>`	`screenLinks`
`static String`	`SCREENLINKS`
`static String`	`SCREENLINKSCOUNTPEROWNER`
`protected String`	`status`
`static String`	`STATUS`
`protected Integer`	`version`
`static String`	`VERSION`
`protected Length`	`wellOriginX`
`static String`	`WELLORIGINX`
`protected Length`	`wellOriginY`
`static String`	`WELLORIGINY`
`protected Set<Well>`	`wells`
`static String`	`WELLS`

Constructor Summary

Constructors
Modifier Constructor and Description

Plate()

protected Plate(Long id)

Plate(Long id, boolean loaded)
Main constructor.

Plate(String _name)

Constructors
Modifier	Constructor and Description
	`Plate()`
`protected`	`Plate(Long id)`
	`Plate(Long id, boolean loaded)` Main constructor.
	`Plate(String _name)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`acceptFilter(Filter __filter)`
`void`	`addPlateAcquisition(PlateAcquisition target)` use instead of setPlateAcquisitions .
`void`	`addPlateAcquisitionSet(Collection<PlateAcquisition> targets)` use like addPlateAcquisition.
`void`	`addPlateAnnotationLink(PlateAnnotationLink target)` use instead of setAnnotationLinks .
`void`	`addPlateAnnotationLink(PlateAnnotationLink link, boolean bothSides)` Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loaded
`void`	`addPlateAnnotationLinkSet(Collection<PlateAnnotationLink> targets)` use like addPlateAnnotationLink.
`void`	`addScreenPlateLink(ScreenPlateLink target)` use instead of setScreenLinks .
`void`	`addScreenPlateLink(ScreenPlateLink link, boolean bothSides)` Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
`void`	`addScreenPlateLinkSet(Collection<ScreenPlateLink> targets)` use like addScreenPlateLink.
`void`	`addWell(Well target)` use instead of setWells .
`void`	`addWellSet(Collection<Well> targets)` use like addWell.
`void`	`clearAnnotationLinks()` clears the set.
`void`	`clearPlateAcquisitions()` clears the set.
`void`	`clearScreenLinks()` clears the set.
`void`	`clearWells()` clears the set.
`<E> List<E>`	`collectAnnotationLinks(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results.
`<E> List<E>`	`collectPlateAcquisitions(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results.
`<E> List<E>`	`collectScreenLinks(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results.
`<E> List<E>`	`collectWells(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results.
`<E> List<E>`	`eachLinkedAnnotation(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
`<E> List<E>`	`eachLinkedScreen(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results.
`protected void`	`errorIfUnloaded()`
`Set<String>`	`fields()` returns a Set of field names that belong to this class
`Set<PlateAnnotationLink>`	`findPlateAnnotationLink(Annotation target)` find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
`Set<ScreenPlateLink>`	`findScreenPlateLink(Screen target)` find all ome.model.screen.ScreenPlateLink which have the argument as their parent.
`protected Set<PlateAnnotationLink>`	`getAnnotationLinks()` returns annotationLinks .
`Map<Long,Long>`	`getAnnotationLinksCountPerOwner()` If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has.
`String`	`getColumnNamingConvention()` Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)
`Integer`	`getColumns()` Simple field ome.model.screen.Plate.columns (java.lang.Integer)
`Integer`	`getDefaultSample()` Simple field ome.model.screen.Plate.defaultSample (java.lang.Integer)
`String`	`getDescription()` Simple field ome.model.screen.Plate.description (java.lang.String)
`Details`	`getDetails()` The details of this object correspond to low-level system information.
`String`	`getExternalIdentifier()` Simple field ome.model.screen.Plate.externalIdentifier (java.lang.String)
`GraphHolder`	`getGraphHolder()` retrieves the `GraphHolder` for this entity.
`Long`	`getId()` The DB unique identifier for this object.
`String`	`getName()` Simple field ome.model.screen.Plate.name (java.lang.String)
`protected Set<PlateAcquisition>`	`getPlateAcquisitions()` returns plateAcquisitions .
`String`	`getRowNamingConvention()` Simple field ome.model.screen.Plate.rowNamingConvention (java.lang.String)
`Integer`	`getRows()` Simple field ome.model.screen.Plate.rows (java.lang.Integer)
`protected Set<ScreenPlateLink>`	`getScreenLinks()` returns screenLinks .
`Map<Long,Long>`	`getScreenLinksCountPerOwner()` If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has.
`String`	`getStatus()` Simple field ome.model.screen.Plate.status (java.lang.String)
`Integer`	`getVersion()` This version number is controlled by the database for optimisitic locking.
`Length`	`getWellOriginX()` Enum-mapped unit-based field ome.model.screen.Plate.wellOriginX (ome.model.units.Length)
`Length`	`getWellOriginY()` Enum-mapped unit-based field ome.model.screen.Plate.wellOriginY (ome.model.units.Length)
`protected Set<Well>`	`getWells()` returns wells .
`boolean`	`isLoaded()` transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
`boolean`	`isValid()` calls the class-specific validator for this instance and returns the value from `Validation.isValid()`
`Iterator<PlateAnnotationLink>`	`iterateAnnotationLinks()` should be used rather than accessing the annotationLinks set directly.
`Iterator<PlateAcquisition>`	`iteratePlateAcquisitions()` should be used rather than accessing the plateAcquisitions set directly.
`Iterator<ScreenPlateLink>`	`iterateScreenLinks()` should be used rather than accessing the screenLinks set directly.
`Iterator<Well>`	`iterateWells()` should be used rather than accessing the wells set directly.
`PlateAnnotationLink`	`linkAnnotation(Annotation addition)` Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks .
`Iterator<Annotation>`	`linkedAnnotationIterator()` provides an iterator over the parent values of the annotationLinks.
`List<Annotation>`	`linkedAnnotationList()` produces a `List`-copy of the underlying collection.
`Iterator<Screen>`	`linkedScreenIterator()` provides an iterator over the child values of the screenLinks.
`List<Screen>`	`linkedScreenList()` produces a `List`-copy of the underlying collection.
`ScreenPlateLink`	`linkScreen(Screen addition)` Adds a ome.model.screen.ScreenPlateLink to screenLinks .
`Plate`	`newInstance()`
`Plate`	`proxy()`
`void`	`putAt(String field, Object value)` stores a value in this instance.
`void`	`removePlateAcquisition(PlateAcquisition target)` removes a single element from this set and makes the inverse call on ome.model.screen.PlateAcquisition
`void`	`removePlateAcquisitionSet(Collection<PlateAcquisition> targets)` use like removePlateAcquisition
`void`	`removePlateAnnotationLink(PlateAnnotationLink target)` removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAnnotationLink
`void`	`removePlateAnnotationLink(PlateAnnotationLink link, boolean bothSides)` removes the given PlateAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
`void`	`removePlateAnnotationLinkSet(Collection<PlateAnnotationLink> targets)` use like removePlateAnnotationLink
`void`	`removeScreenPlateLink(ScreenPlateLink target)` removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink
`void`	`removeScreenPlateLink(ScreenPlateLink link, boolean bothSides)` removes the given ScreenPlateLink from screenLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
`void`	`removeScreenPlateLinkSet(Collection<ScreenPlateLink> targets)` use like removeScreenPlateLink
`void`	`removeWell(Well target)` removes a single element from this set and makes the inverse call on ome.model.screen.Well
`void`	`removeWellSet(Collection<Well> targets)` use like removeWell
`Object`	`retrieve(String field)` retrieves a value from this instance.
`protected void`	`setAnnotationLinks(Set<PlateAnnotationLink> annotationLinks)` setter for annotationLinks should be avoided.
`protected void`	`setAnnotationLinksCountPerOwner(Map<Long,Long> map)`
`void`	`setColumnNamingConvention(String columnNamingConvention)`
`void`	`setColumns(Integer columns)`
`void`	`setDefaultSample(Integer defaultSample)`
`void`	`setDescription(String description)`
`protected void`	`setDetails(Details details)` Use the `Details.copy(ome.model.internal.Details)` or `Details.shallowCopy(ome.model.internal.Details)` methods to set the `Plate.Details` instance instead.
`void`	`setExternalIdentifier(String externalIdentifier)`
`void`	`setId(Long id)` usually unneeded.
`void`	`setName(String name)`
`protected void`	`setPlateAcquisitions(Set<PlateAcquisition> plateAcquisitions)` setter for plateAcquisitions should be avoided.
`void`	`setRowNamingConvention(String rowNamingConvention)`
`void`	`setRows(Integer rows)`
`protected void`	`setScreenLinks(Set<ScreenPlateLink> screenLinks)` setter for screenLinks should be avoided.
`protected void`	`setScreenLinksCountPerOwner(Map<Long,Long> map)`
`void`	`setStatus(String status)`
`void`	`setVersion(Integer version)` use with caution.
`void`	`setWellOriginX(Length wellOriginX)`
`void`	`setWellOriginY(Length wellOriginY)`
`protected void`	`setWells(Set<Well> wells)` setter for wells should be avoided.
`int`	`sizeOfAnnotationLinks()` returns the size of annotationLinks.
`int`	`sizeOfPlateAcquisitions()` returns the size of plateAcquisitions.
`int`	`sizeOfScreenLinks()` returns the size of screenLinks.
`int`	`sizeOfWells()` returns the size of wells.
`protected void`	`throwNullCollectionException(String propertyName)`
`String`	`toString()`
`void`	`unlinkAnnotation(Annotation removal)` unlinks all ome.model.annotations.Annotation instances from this instance.
`void`	`unlinkScreen(Screen removal)` unlinks all ome.model.screen.Screen instances from this instance.
`void`	`unload()` set the loaded field to false, and set all non-ID fields to null.
`Collection<PlateAnnotationLink>`	`unmodifiableAnnotationLinks()` Returns an unmodifiable collection-view
`Collection<PlateAcquisition>`	`unmodifiablePlateAcquisitions()` Returns an unmodifiable collection-view
`Collection<ScreenPlateLink>`	`unmodifiableScreenLinks()` Returns an unmodifiable collection-view
`Collection<Well>`	`unmodifiableWells()` Returns an unmodifiable collection-view
`Validation`	`validate()` calls the class-specific validator for this instance and returns the `Validation` object.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - OWNER_FILTER
```
public static final String OWNER_FILTER
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER
```
public static final String GROUP_FILTER
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER
```
public static final String EVENT_FILTER
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER
```
public static final String PERMS_FILTER
```
    See Also:
    
    Constant Field Values
  - ID
```
public static final String ID
```
    See Also:
    
    Constant Field Values
  - id
```
protected Long id
```
  - VERSION
```
public static final String VERSION
```
    See Also:
    
    Constant Field Values
  - version
```
protected Integer version
```
  - defaultSample
```
protected Integer defaultSample
```
  - columnNamingConvention
```
protected String columnNamingConvention
```
  - rowNamingConvention
```
protected String rowNamingConvention
```
  - wellOriginX
```
protected Length wellOriginX
```
  - wellOriginY
```
protected Length wellOriginY
```
  - rows
```
protected Integer rows
```
  - columns
```
protected Integer columns
```
  - status
```
protected String status
```
  - externalIdentifier
```
protected String externalIdentifier
```
  - screenLinks
```
protected Set<ScreenPlateLink> screenLinks
```
  - OWNER_FILTER_SCREENLINKS
```
public static final String OWNER_FILTER_SCREENLINKS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_SCREENLINKS
```
public static final String GROUP_FILTER_SCREENLINKS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_SCREENLINKS
```
public static final String EVENT_FILTER_SCREENLINKS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_SCREENLINKS
```
public static final String PERMS_FILTER_SCREENLINKS
```
    See Also:
    
    Constant Field Values
  - wells
```
protected Set<Well> wells
```
  - OWNER_FILTER_WELLS
```
public static final String OWNER_FILTER_WELLS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_WELLS
```
public static final String GROUP_FILTER_WELLS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_WELLS
```
public static final String EVENT_FILTER_WELLS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_WELLS
```
public static final String PERMS_FILTER_WELLS
```
    See Also:
    
    Constant Field Values
  - plateAcquisitions
```
protected Set<PlateAcquisition> plateAcquisitions
```
  - OWNER_FILTER_PLATEACQUISITIONS
```
public static final String OWNER_FILTER_PLATEACQUISITIONS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_PLATEACQUISITIONS
```
public static final String GROUP_FILTER_PLATEACQUISITIONS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_PLATEACQUISITIONS
```
public static final String EVENT_FILTER_PLATEACQUISITIONS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_PLATEACQUISITIONS
```
public static final String PERMS_FILTER_PLATEACQUISITIONS
```
    See Also:
    
    Constant Field Values
  - annotationLinks
```
protected Set<PlateAnnotationLink> annotationLinks
```
  - OWNER_FILTER_ANNOTATIONLINKS
```
public static final String OWNER_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_ANNOTATIONLINKS
```
public static final String GROUP_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_ANNOTATIONLINKS
```
public static final String EVENT_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_ANNOTATIONLINKS
```
public static final String PERMS_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - name
```
protected String name
```
  - description
```
protected String description
```
  - details
```
protected Details details
```
  - DEFAULTSAMPLE
```
public static final String DEFAULTSAMPLE
```
    See Also:
    
    Constant Field Values
  - COLUMNNAMINGCONVENTION
```
public static final String COLUMNNAMINGCONVENTION
```
    See Also:
    
    Constant Field Values
  - ROWNAMINGCONVENTION
```
public static final String ROWNAMINGCONVENTION
```
    See Also:
    
    Constant Field Values
  - WELLORIGINX
```
public static final String WELLORIGINX
```
    See Also:
    
    Constant Field Values
  - WELLORIGINY
```
public static final String WELLORIGINY
```
    See Also:
    
    Constant Field Values
  - ROWS
```
public static final String ROWS
```
    See Also:
    
    Constant Field Values
  - COLUMNS
```
public static final String COLUMNS
```
    See Also:
    
    Constant Field Values
  - STATUS
```
public static final String STATUS
```
    See Also:
    
    Constant Field Values
  - EXTERNALIDENTIFIER
```
public static final String EXTERNALIDENTIFIER
```
    See Also:
    
    Constant Field Values
  - SCREENLINKSCOUNTPEROWNER
```
public static final String SCREENLINKSCOUNTPEROWNER
```
    See Also:
    
    Constant Field Values
  - SCREENLINKS
```
public static final String SCREENLINKS
```
    See Also:
    
    Constant Field Values
  - WELLS
```
public static final String WELLS
```
    See Also:
    
    Constant Field Values
  - PLATEACQUISITIONS
```
public static final String PLATEACQUISITIONS
```
    See Also:
    
    Constant Field Values
  - ANNOTATIONLINKSCOUNTPEROWNER
```
public static final String ANNOTATIONLINKSCOUNTPEROWNER
```
    See Also:
    
    Constant Field Values
  - ANNOTATIONLINKS
```
public static final String ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - NAME
```
public static final String NAME
```
    See Also:
    
    Constant Field Values
  - DESCRIPTION
```
public static final String DESCRIPTION
```
    See Also:
    
    Constant Field Values
  - DETAILS
```
public static final String DETAILS
```
    See Also:
    
    Constant Field Values
  - FIELDS
```
public static final Set<String> FIELDS
```
  - _dynamicFields
```
protected Map<String,Object> _dynamicFields
```
  - _loaded
```
protected boolean _loaded
```
- Constructor Detail
  - Plate
```
public Plate()
```
  - Plate
```
protected Plate(Long id)
```
  - Plate
```
public Plate(Long id,
             boolean loaded)
```
    Main constructor.
  - Plate
```
public Plate(String _name)
```
- Method Detail
  - getId
```
@DocumentId
public Long getId()
```
    The DB unique identifier for this object. You are not responsible for setting the id; however, it can be useful for creating "unloaded" versions of your objects. Each top-level entity contains an id field of type long. For all objects returned from the server, this value will be non-null, which doesn't necessarily hold for the other fields.
    
    Specified by:
    
    getId in interface IObject
    
    Returns:
    
    Long primary key. May be null.
  - setId
```
public void setId(Long id)
```
    Description copied from interface: IObject
    
    usually unneeded. Ids are managed by the backend.
    
    Specified by:
    
    setId in interface IObject
    
    Parameters:
    
    id - Long value for this id.
  - getVersion
```
public Integer getVersion()
```
    This version number is controlled by the database for optimisitic locking.
    
    Specified by:
    
    getVersion in interface IMutable
  - setVersion
```
public void setVersion(Integer version)
```
    Description copied from interface: IMutable
    
    use with caution. In general, the version should only be altered by the backend. In the best case, an exception will be thrown for a version not equal to the current DB value. In the worst (though rare) case, the new version could match the database, and override optimistic lock checks that are supposed to prevent data loss.
    
    Specified by:
    
    setVersion in interface IMutable
    
    Parameters:
    
    version - Value for this objects version.
  - getDefaultSample
```
@Field(index=UN_TOKENIZED) @Field(index=UN_TOKENIZED,name="combined_fields")
public Integer getDefaultSample()
```
    Simple field ome.model.screen.Plate.defaultSample (java.lang.Integer)
  - setDefaultSample
```
public void setDefaultSample(Integer defaultSample)
```
  - getColumnNamingConvention
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getColumnNamingConvention()
```
    Simple field ome.model.screen.Plate.columnNamingConvention (java.lang.String)
  - setColumnNamingConvention
```
public void setColumnNamingConvention(String columnNamingConvention)
```
  - getRowNamingConvention
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getRowNamingConvention()
```
    Simple field ome.model.screen.Plate.rowNamingConvention (java.lang.String)
  - setRowNamingConvention
```
public void setRowNamingConvention(String rowNamingConvention)
```
  - getWellOriginX
```
public Length getWellOriginX()
```
    Enum-mapped unit-based field ome.model.screen.Plate.wellOriginX (ome.model.units.Length)
  - setWellOriginX
```
public void setWellOriginX(Length wellOriginX)
```
  - getWellOriginY
```
public Length getWellOriginY()
```
    Enum-mapped unit-based field ome.model.screen.Plate.wellOriginY (ome.model.units.Length)
  - setWellOriginY
```
public void setWellOriginY(Length wellOriginY)
```
  - getRows
```
@Field(index=UN_TOKENIZED) @Field(index=UN_TOKENIZED,name="combined_fields")
public Integer getRows()
```
    Simple field ome.model.screen.Plate.rows (java.lang.Integer)
  - setRows
```
public void setRows(Integer rows)
```
  - getColumns
```
@Field(index=UN_TOKENIZED) @Field(index=UN_TOKENIZED,name="combined_fields")
public Integer getColumns()
```
    Simple field ome.model.screen.Plate.columns (java.lang.Integer)
  - setColumns
```
public void setColumns(Integer columns)
```
  - getStatus
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getStatus()
```
    Simple field ome.model.screen.Plate.status (java.lang.String)
  - setStatus
```
public void setStatus(String status)
```
  - getExternalIdentifier
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getExternalIdentifier()
```
    Simple field ome.model.screen.Plate.externalIdentifier (java.lang.String)
  - setExternalIdentifier
```
public void setExternalIdentifier(String externalIdentifier)
```
  - getScreenLinks
```
protected Set<ScreenPlateLink> getScreenLinks()
```
    returns screenLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.screenLinks (ome.model.screen.ScreenPlateLink)
  - setScreenLinks
```
protected void setScreenLinks(Set<ScreenPlateLink> screenLinks)
```
    setter for screenLinks should be avoided. Does not fulfill normal semantics.
  - sizeOfScreenLinks
```
public int sizeOfScreenLinks()
```
    returns the size of screenLinks. If less than zero, the Set was null.
  - iterateScreenLinks
```
public Iterator<ScreenPlateLink> iterateScreenLinks()
```
    should be used rather than accessing the screenLinks set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfScreenLinks() is less than zero.
  - unmodifiableScreenLinks
```
public Collection<ScreenPlateLink> unmodifiableScreenLinks()
```
    Returns an unmodifiable collection-view
  - collectScreenLinks
```
public <E> List<E> collectScreenLinks(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.screen.ScreenPlateLink while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateScreenLinks() internally and so will return a value even if the underlying collection is null.
  - addScreenPlateLink
```
public void addScreenPlateLink(ScreenPlateLink target)
```
    use instead of setScreenLinks . Makes the necessary call on ome.model.screen.ScreenPlateLink as well.
  - addScreenPlateLinkSet
```
public void addScreenPlateLinkSet(Collection<ScreenPlateLink> targets)
```
    use like addScreenPlateLink.
  - removeScreenPlateLink
```
public void removeScreenPlateLink(ScreenPlateLink target)
```
    removes a single element from this set and makes the inverse call on ome.model.screen.ScreenPlateLink
  - removeScreenPlateLinkSet
```
public void removeScreenPlateLinkSet(Collection<ScreenPlateLink> targets)
```
    use like removeScreenPlateLink
  - linkScreen
```
public ScreenPlateLink linkScreen(Screen addition)
```
    Adds a ome.model.screen.ScreenPlateLink to screenLinks . This entails changing our screenLinks Set, creating a new ome.model.screen.ScreenPlateLink and calling linkScreen on the ome.model.screen.Screen.
  - addScreenPlateLink
```
public void addScreenPlateLink(ScreenPlateLink link,
                               boolean bothSides)
```
    Adds a ome.model.screen.ScreenPlateLink to screenLinks, allowing for recursion -- whether or not addScreenPlateLink will be called on the addition if it is loaded
  - linkedScreenIterator
```
public Iterator<Screen> linkedScreenIterator()
```
    provides an iterator over the child values of the screenLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in an ConcurrentModificationException. Use linkedScreenList() instead.
  - findScreenPlateLink
```
public Set<ScreenPlateLink> findScreenPlateLink(Screen target)
```
    find all ome.model.screen.ScreenPlateLink which have the argument as their parent.
  - linkedScreenList
```
public List<Screen> linkedScreenList()
```
    produces a List-copy of the underlying collection. Unlike, linkedScreenIterator(), while using the returned List, modifications can be made to the underlying collection without throwing ConcurrentModificationException.
  - eachLinkedScreen
```
public <E> List<E> eachLinkedScreen(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.screen.Screen while collecting the results. If block == null, then the iterator values themselves are collected.
  - unlinkScreen
```
public void unlinkScreen(Screen removal)
```
    unlinks all ome.model.screen.Screen instances from this instance.
  - removeScreenPlateLink
```
public void removeScreenPlateLink(ScreenPlateLink link,
                                  boolean bothSides)
```
    removes the given ScreenPlateLink from screenLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
  - clearScreenLinks
```
public void clearScreenLinks()
```
    clears the set.
  - setScreenLinksCountPerOwner
```
protected void setScreenLinksCountPerOwner(Map<Long,Long> map)
```
  - getScreenLinksCountPerOwner
```
public Map<Long,Long> getScreenLinksCountPerOwner()
```
    If fetched, returns the count(*) of ome.model.screen.ScreenPlateLink that a user has. If unfetched, returns null. No entries in the collection should be null.
  - getWells
```
protected Set<Well> getWells()
```
    returns wells . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.wells (ome.model.screen.Well)
  - setWells
```
protected void setWells(Set<Well> wells)
```
    setter for wells should be avoided. Does not fulfill normal semantics.
  - sizeOfWells
```
public int sizeOfWells()
```
    returns the size of wells. If less than zero, the Set was null.
  - iterateWells
```
public Iterator<Well> iterateWells()
```
    should be used rather than accessing the wells set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfWells() is less than zero.
  - unmodifiableWells
```
public Collection<Well> unmodifiableWells()
```
    Returns an unmodifiable collection-view
  - collectWells
```
public <E> List<E> collectWells(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.screen.Well while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateWells() internally and so will return a value even if the underlying collection is null.
  - addWell
```
public void addWell(Well target)
```
    use instead of setWells . Makes the necessary call on ome.model.screen.Well as well.
  - addWellSet
```
public void addWellSet(Collection<Well> targets)
```
    use like addWell.
  - removeWell
```
public void removeWell(Well target)
```
    removes a single element from this set and makes the inverse call on ome.model.screen.Well
  - removeWellSet
```
public void removeWellSet(Collection<Well> targets)
```
    use like removeWell
  - clearWells
```
public void clearWells()
```
    clears the set.
  - getPlateAcquisitions
```
protected Set<PlateAcquisition> getPlateAcquisitions()
```
    returns plateAcquisitions . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.plateAcquisitions (ome.model.screen.PlateAcquisition)
  - setPlateAcquisitions
```
protected void setPlateAcquisitions(Set<PlateAcquisition> plateAcquisitions)
```
    setter for plateAcquisitions should be avoided. Does not fulfill normal semantics.
  - sizeOfPlateAcquisitions
```
public int sizeOfPlateAcquisitions()
```
    returns the size of plateAcquisitions. If less than zero, the Set was null.
  - iteratePlateAcquisitions
```
public Iterator<PlateAcquisition> iteratePlateAcquisitions()
```
    should be used rather than accessing the plateAcquisitions set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfPlateAcquisitions() is less than zero.
  - unmodifiablePlateAcquisitions
```
public Collection<PlateAcquisition> unmodifiablePlateAcquisitions()
```
    Returns an unmodifiable collection-view
  - collectPlateAcquisitions
```
public <E> List<E> collectPlateAcquisitions(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.screen.PlateAcquisition while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iteratePlateAcquisitions() internally and so will return a value even if the underlying collection is null.
  - addPlateAcquisition
```
public void addPlateAcquisition(PlateAcquisition target)
```
    use instead of setPlateAcquisitions . Makes the necessary call on ome.model.screen.PlateAcquisition as well.
  - addPlateAcquisitionSet
```
public void addPlateAcquisitionSet(Collection<PlateAcquisition> targets)
```
    use like addPlateAcquisition.
  - removePlateAcquisition
```
public void removePlateAcquisition(PlateAcquisition target)
```
    removes a single element from this set and makes the inverse call on ome.model.screen.PlateAcquisition
  - removePlateAcquisitionSet
```
public void removePlateAcquisitionSet(Collection<PlateAcquisition> targets)
```
    use like removePlateAcquisition
  - clearPlateAcquisitions
```
public void clearPlateAcquisitions()
```
    clears the set.
  - getAnnotationLinks
```
protected Set<PlateAnnotationLink> getAnnotationLinks()
```
    returns annotationLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.screen.Plate.annotationLinks (ome.model.annotations.PlateAnnotationLink)
  - setAnnotationLinks
```
protected void setAnnotationLinks(Set<PlateAnnotationLink> annotationLinks)
```
    setter for annotationLinks should be avoided. Does not fulfill normal semantics.
  - sizeOfAnnotationLinks
```
public int sizeOfAnnotationLinks()
```
    returns the size of annotationLinks. If less than zero, the Set was null.
    
    Specified by:
    
    sizeOfAnnotationLinks in interface IAnnotated
  - iterateAnnotationLinks
```
public Iterator<PlateAnnotationLink> iterateAnnotationLinks()
```
    should be used rather than accessing the annotationLinks set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfAnnotationLinks() is less than zero.
    
    Specified by:
    
    iterateAnnotationLinks in interface IAnnotated
  - unmodifiableAnnotationLinks
```
public Collection<PlateAnnotationLink> unmodifiableAnnotationLinks()
```
    Returns an unmodifiable collection-view
    
    Specified by:
    
    unmodifiableAnnotationLinks in interface IAnnotated
  - collectAnnotationLinks
```
public <E> List<E> collectAnnotationLinks(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.annotations.PlateAnnotationLink while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateAnnotationLinks() internally and so will return a value even if the underlying collection is null.
    
    Specified by:
    
    collectAnnotationLinks in interface IAnnotated
  - addPlateAnnotationLink
```
public void addPlateAnnotationLink(PlateAnnotationLink target)
```
    use instead of setAnnotationLinks . Makes the necessary call on ome.model.annotations.PlateAnnotationLink as well.
  - addPlateAnnotationLinkSet
```
public void addPlateAnnotationLinkSet(Collection<PlateAnnotationLink> targets)
```
    use like addPlateAnnotationLink.
  - removePlateAnnotationLink
```
public void removePlateAnnotationLink(PlateAnnotationLink target)
```
    removes a single element from this set and makes the inverse call on ome.model.annotations.PlateAnnotationLink
  - removePlateAnnotationLinkSet
```
public void removePlateAnnotationLinkSet(Collection<PlateAnnotationLink> targets)
```
    use like removePlateAnnotationLink
  - linkAnnotation
```
public PlateAnnotationLink linkAnnotation(Annotation addition)
```
    Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks . This entails changing our annotationLinks Set, creating a new ome.model.annotations.PlateAnnotationLink and calling linkAnnotation on the ome.model.annotations.Annotation.
    
    Specified by:
    
    linkAnnotation in interface IAnnotated
  - addPlateAnnotationLink
```
public void addPlateAnnotationLink(PlateAnnotationLink link,
                                   boolean bothSides)
```
    Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks, allowing for recursion -- whether or not addPlateAnnotationLink will be called on the addition if it is loaded
  - linkedAnnotationIterator
```
public Iterator<Annotation> linkedAnnotationIterator()
```
    provides an iterator over the parent values of the annotationLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in an ConcurrentModificationException. Use linkedAnnotationList() instead.
    
    Specified by:
    
    linkedAnnotationIterator in interface IAnnotated
  - findPlateAnnotationLink
```
public Set<PlateAnnotationLink> findPlateAnnotationLink(Annotation target)
```
    find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
  - linkedAnnotationList
```
public List<Annotation> linkedAnnotationList()
```
    produces a List-copy of the underlying collection. Unlike, linkedAnnotationIterator(), while using the returned List, modifications can be made to the underlying collection without throwing ConcurrentModificationException.
    
    Specified by:
    
    linkedAnnotationList in interface IAnnotated
  - eachLinkedAnnotation
```
public <E> List<E> eachLinkedAnnotation(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results. If block == null, then the iterator values themselves are collected.
    
    Specified by:
    
    eachLinkedAnnotation in interface IAnnotated
  - unlinkAnnotation
```
public void unlinkAnnotation(Annotation removal)
```
    unlinks all ome.model.annotations.Annotation instances from this instance.
    
    Specified by:
    
    unlinkAnnotation in interface IAnnotated
  - removePlateAnnotationLink
```
public void removePlateAnnotationLink(PlateAnnotationLink link,
                                      boolean bothSides)
```
    removes the given PlateAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkPlate again if loaded.
  - clearAnnotationLinks
```
public void clearAnnotationLinks()
```
    clears the set.
    
    Specified by:
    
    clearAnnotationLinks in interface IAnnotated
  - setAnnotationLinksCountPerOwner
```
protected void setAnnotationLinksCountPerOwner(Map<Long,Long> map)
```
  - getAnnotationLinksCountPerOwner
```
public Map<Long,Long> getAnnotationLinksCountPerOwner()
```
    If fetched, returns the count(*) of ome.model.annotations.PlateAnnotationLink that a user has. If unfetched, returns null. No entries in the collection should be null.
  - getName
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getName()
```
    Simple field ome.model.screen.Plate.name (java.lang.String)
  - setName
```
public void setName(String name)
```
  - getDescription
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getDescription()
```
    Simple field ome.model.screen.Plate.description (java.lang.String)
  - setDescription
```
public void setDescription(String description)
```
  - getDetails
```
public Details getDetails()
```
    The details of this object correspond to low-level system information. Owner, permissions, Details is always guaranteed to be non-null, unless the user actively nulls it. Every entity also contains a Detail reference, which doesn't refer to a separate table but rather to a collection of fields collected into a Hibernate "component" which is embedded in the object. HQL queries which refer to the Details component cannot directly fetch the entity like this: select o from Object join fetch o.details but rather each field of the Details instance must be explicitly joined: select o from Object join fetch o.details.owner It should also be noted that not all types have all the fields which are present on Details. For example, select e from Experimenter e join fetch e.details.owner will fail. Experimenter has no owner, for obvious reasons. Note: subclasses of this class will return a subclasse of the Details type.
    
    Specified by:
    
    getDetails in interface IObject
  - setDetails
```
protected void setDetails(Details details)
```
    Use the Details.copy(ome.model.internal.Details) or Details.shallowCopy(ome.model.internal.Details) methods to set the Plate.Details instance instead.
  - isValid
```
public boolean isValid()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the value from Validation.isValid()
    
    Specified by:
    
    isValid in interface IObject
  - validate
```
public Validation validate()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the Validation object.
    
    Specified by:
    
    validate in interface IObject
    
    Returns:
    
    Validation collecting parameter.
  - newInstance
```
public Plate newInstance()
```
  - proxy
```
public Plate proxy()
```
  - acceptFilter
```
public boolean acceptFilter(Filter __filter)
```
    Specified by:
    
    acceptFilter in interface Filterable
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - fields
```
public Set<String> fields()
```
    Description copied from interface: IObject
    
    returns a Set of field names that belong to this class
    
    Specified by:
    
    fields in interface IObject
  - retrieve
```
public Object retrieve(String field)
```
    Description copied from interface: IObject
    
    retrieves a value from this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be retrieved from a lazy-loaded map filled by calls to IObject.putAt(String, Object)
    
    Specified by:
    
    retrieve in interface IObject
  - putAt
```
public void putAt(String field,
                  Object value)
```
    Description copied from interface: IObject
    
    stores a value in this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be stored in a lazy-loaded map.
    
    Specified by:
    
    putAt in interface IObject
    
    Parameters:
    
    field - Field name
    
    value - Any object to be stored.
  - isLoaded
```
public boolean isLoaded()
```
    Description copied from interface: IObject
    
    transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
    
    Specified by:
    
    isLoaded in interface IObject
  - errorIfUnloaded
```
protected void errorIfUnloaded()
```
  - unload
```
public void unload()
```
    Description copied from interface: IObject
    
    set the loaded field to false, and set all non-ID fields to null. Subsequent calls to all accessors other than getId/setId will throw an ApiUsageException
    
    Specified by:
    
    unload in interface IObject
  - getGraphHolder
```
public final GraphHolder getGraphHolder()
```
    Description copied from interface: IObject
    
    retrieves the GraphHolder for this entity. If the GraphHolder has not been actively set, a new one will be instatiated.
    
    Specified by:
    
    getGraphHolder in interface IObject
    
    Returns:
    
    Non-null GraphHolder
  - throwNullCollectionException
```
protected void throwNullCollectionException(String propertyName)
```

Class Plate

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

OWNER_FILTER

GROUP_FILTER

EVENT_FILTER

PERMS_FILTER

ID

id

VERSION

version

defaultSample

columnNamingConvention

rowNamingConvention

wellOriginX

wellOriginY

rows

columns

status

externalIdentifier

screenLinks

OWNER_FILTER_SCREENLINKS

GROUP_FILTER_SCREENLINKS

EVENT_FILTER_SCREENLINKS

PERMS_FILTER_SCREENLINKS

wells

OWNER_FILTER_WELLS

GROUP_FILTER_WELLS

EVENT_FILTER_WELLS

PERMS_FILTER_WELLS

plateAcquisitions

OWNER_FILTER_PLATEACQUISITIONS

GROUP_FILTER_PLATEACQUISITIONS

EVENT_FILTER_PLATEACQUISITIONS

PERMS_FILTER_PLATEACQUISITIONS

annotationLinks

OWNER_FILTER_ANNOTATIONLINKS

GROUP_FILTER_ANNOTATIONLINKS

EVENT_FILTER_ANNOTATIONLINKS

PERMS_FILTER_ANNOTATIONLINKS

name

description

details

DEFAULTSAMPLE

COLUMNNAMINGCONVENTION

ROWNAMINGCONVENTION

WELLORIGINX

WELLORIGINY

ROWS

COLUMNS

STATUS

EXTERNALIDENTIFIER

SCREENLINKSCOUNTPEROWNER

SCREENLINKS

WELLS

PLATEACQUISITIONS

ANNOTATIONLINKSCOUNTPEROWNER

ANNOTATIONLINKS

NAME

DESCRIPTION

DETAILS

FIELDS

_dynamicFields

_loaded

Constructor Detail

Plate

Plate

Plate

Plate

Method Detail

getId

setId

getVersion

setVersion

getDefaultSample

setDefaultSample