Fileset (OMERO API)

java.lang.Object
- ome.model.fs.Fileset

All Implemented Interfaces:

Serializable, IAnnotated, IMutable, IObject, Filterable
```
@Entity
 @Indexed(index="FullText")
 @ClassBridge(name="details",
             impl=DetailsFieldBridge.class,
             index=UN_TOKENIZED,
             store=NO)
public class Fileset
extends Object
implements Serializable, IObject, IMutable, IAnnotated
```
These filter definitions are used by the security system to eliminate non-readable objects from queries. The regular user does not need to worry about them, as they will be injected directly into the SQL (not HQL)

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class Fileset.Details

Nested Classes
Modifier and Type	Class and Description
`static class`	`Fileset.Details`

Field Summary

Fields
Modifier and Type	Field and Description
`protected Map<String,Object>`	`_dynamicFields`
`protected boolean`	`_loaded`
`protected Set<FilesetAnnotationLink>`	`annotationLinks`
`static String`	`ANNOTATIONLINKS`
`static String`	`ANNOTATIONLINKSCOUNTPEROWNER`
`protected Details`	`details`
`static String`	`DETAILS`
`static String`	`EVENT_FILTER`
`static String`	`EVENT_FILTER_ANNOTATIONLINKS`
`static String`	`EVENT_FILTER_IMAGES`
`static String`	`EVENT_FILTER_JOBLINKS`
`static String`	`EVENT_FILTER_USEDFILES`
`static Set<String>`	`FIELDS`
`static String`	`GROUP_FILTER`
`static String`	`GROUP_FILTER_ANNOTATIONLINKS`
`static String`	`GROUP_FILTER_IMAGES`
`static String`	`GROUP_FILTER_JOBLINKS`
`static String`	`GROUP_FILTER_USEDFILES`
`protected Long`	`id`
`static String`	`ID`
`protected Set<Image>`	`images`
`static String`	`IMAGES`
`protected List<FilesetJobLink>`	`jobLinks`
`static String`	`JOBLINKS`
`static String`	`JOBLINKSCOUNTPEROWNER`
`static String`	`OWNER_FILTER`
`static String`	`OWNER_FILTER_ANNOTATIONLINKS`
`static String`	`OWNER_FILTER_IMAGES`
`static String`	`OWNER_FILTER_JOBLINKS`
`static String`	`OWNER_FILTER_USEDFILES`
`static String`	`PERMS_FILTER`
`static String`	`PERMS_FILTER_ANNOTATIONLINKS`
`static String`	`PERMS_FILTER_IMAGES`
`static String`	`PERMS_FILTER_JOBLINKS`
`static String`	`PERMS_FILTER_USEDFILES`
`protected String`	`templatePrefix`
`static String`	`TEMPLATEPREFIX`
`protected List<FilesetEntry>`	`usedFiles`
`static String`	`USEDFILES`
`protected Integer`	`version`
`static String`	`VERSION`

Constructor Summary

Constructors
Modifier	Constructor and Description
	`Fileset()`
`protected`	`Fileset(Long id)`
	`Fileset(Long id, boolean loaded)` Main constructor.
	`Fileset(String _templatePrefix)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`acceptFilter(Filter __filter)`
`void`	`addFilesetAnnotationLink(FilesetAnnotationLink target)` use instead of setAnnotationLinks .
`void`	`addFilesetAnnotationLink(FilesetAnnotationLink link, boolean bothSides)` Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilesetAnnotationLink will be called on the addition if it is loaded
`void`	`addFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink> targets)` use like addFilesetAnnotationLink.
`void`	`addFilesetEntry(FilesetEntry target)` use instead of setUsedFiles .
`void`	`addFilesetEntrySet(Collection<FilesetEntry> targets)` use like addFilesetEntry.
`void`	`addFilesetJobLink(FilesetJobLink target)` use instead of setJobLinks .
`void`	`addFilesetJobLink(FilesetJobLink link, boolean bothSides)` Adds a ome.model.fs.FilesetJobLink to jobLinks, allowing for recursion -- whether or not addFilesetJobLink will be called on the addition if it is loaded
`void`	`addFilesetJobLinkSet(Collection<FilesetJobLink> targets)` use like addFilesetJobLink.
`void`	`addImage(Image target)` use instead of setImages .
`void`	`addImageSet(Collection<Image> targets)` use like addImage.
`void`	`clearAnnotationLinks()` clears the set.
`void`	`clearImages()` clears the set.
`void`	`clearJobLinks()` clears the set.
`void`	`clearUsedFiles()` clears the set.
`<E> List<E>`	`collectAnnotationLinks(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.annotations.FilesetAnnotationLink while collecting the results.
`<E> List<E>`	`collectImages(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results.
`<E> List<E>`	`collectJobLinks(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.fs.FilesetJobLink while collecting the results.
`<E> List<E>`	`collectUsedFiles(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results.
`<E> List<E>`	`eachLinkedAnnotation(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results.
`<E> List<E>`	`eachLinkedJob(CBlock<E> block)` takes a CBlock and calls the block once for each ome.model.jobs.Job while collecting the results.
`protected void`	`errorIfUnloaded()`
`Set<String>`	`fields()` returns a Set of field names that belong to this class
`Set<FilesetAnnotationLink>`	`findFilesetAnnotationLink(Annotation target)` find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.
`Set<FilesetJobLink>`	`findFilesetJobLink(Job target)` find all ome.model.fs.FilesetJobLink which have the argument as their child.
`protected Set<FilesetAnnotationLink>`	`getAnnotationLinks()` returns annotationLinks .
`Map<Long,Long>`	`getAnnotationLinksCountPerOwner()` If fetched, returns the count(*) of ome.model.annotations.FilesetAnnotationLink that a user has.
`Details`	`getDetails()` The details of this object correspond to low-level system information.
`FilesetEntry`	`getFilesetEntry(int index)` Gets the ome.model.fs.FilesetEntry at the given index.
`FilesetJobLink`	`getFilesetJobLink(int index)` Gets the ome.model.fs.FilesetJobLink at the given index.
`GraphHolder`	`getGraphHolder()` retrieves the `GraphHolder` for this entity.
`Long`	`getId()` The DB unique identifier for this object.
`protected Set<Image>`	`getImages()` returns images .
`protected List<FilesetJobLink>`	`getJobLinks()` returns jobLinks .
`Map<Long,Long>`	`getJobLinksCountPerOwner()` If fetched, returns the count(*) of ome.model.fs.FilesetJobLink that a user has.
`FilesetEntry`	`getPrimaryFilesetEntry()` Gets the first element of usedFiles which can be interpreted as the primary or default element in some situations.
`FilesetJobLink`	`getPrimaryFilesetJobLink()` Gets the first element of jobLinks which can be interpreted as the primary or default element in some situations.
`String`	`getTemplatePrefix()` Simple field ome.model.fs.Fileset.templatePrefix (java.lang.String)
`protected List<FilesetEntry>`	`getUsedFiles()` returns usedFiles .
`Integer`	`getVersion()` This version number is controlled by the database for optimisitic locking.
`boolean`	`isLoaded()` transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
`boolean`	`isValid()` calls the class-specific validator for this instance and returns the value from `Validation.isValid()`
`Iterator<FilesetAnnotationLink>`	`iterateAnnotationLinks()` should be used rather than accessing the annotationLinks set directly.
`Iterator<Image>`	`iterateImages()` should be used rather than accessing the images set directly.
`Iterator<FilesetJobLink>`	`iterateJobLinks()` should be used rather than accessing the jobLinks set directly.
`Iterator<FilesetEntry>`	`iterateUsedFiles()` should be used rather than accessing the usedFiles set directly.
`FilesetAnnotationLink`	`linkAnnotation(Annotation addition)` Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks .
`Iterator<Annotation>`	`linkedAnnotationIterator()` provides an iterator over the parent values of the annotationLinks.
`List<Annotation>`	`linkedAnnotationList()` produces a `List`-copy of the underlying collection.
`Iterator<Job>`	`linkedJobIterator()` provides an iterator over the parent values of the jobLinks.
`List<Job>`	`linkedJobList()` produces a `List`-copy of the underlying collection.
`FilesetJobLink`	`linkJob(Job addition)` Adds a ome.model.fs.FilesetJobLink to jobLinks .
`Fileset`	`newInstance()`
`Fileset`	`proxy()`
`void`	`putAt(String field, Object value)` stores a value in this instance.
`void`	`removeFilesetAnnotationLink(FilesetAnnotationLink target)` removes a single element from this set and makes the inverse call on ome.model.annotations.FilesetAnnotationLink
`void`	`removeFilesetAnnotationLink(FilesetAnnotationLink link, boolean bothSides)` removes the given FilesetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
`void`	`removeFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink> targets)` use like removeFilesetAnnotationLink
`void`	`removeFilesetEntry(FilesetEntry target)` removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry
`void`	`removeFilesetEntrySet(Collection<FilesetEntry> targets)` use like removeFilesetEntry
`void`	`removeFilesetJobLink(FilesetJobLink target)` removes a single element from this set and makes the inverse call on ome.model.fs.FilesetJobLink
`void`	`removeFilesetJobLink(FilesetJobLink link, boolean bothSides)` removes the given FilesetJobLink from jobLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
`void`	`removeFilesetJobLinkSet(Collection<FilesetJobLink> targets)` use like removeFilesetJobLink
`void`	`removeImage(Image target)` removes a single element from this set and makes the inverse call on ome.model.core.Image
`void`	`removeImageSet(Collection<Image> targets)` use like removeImage
`Object`	`retrieve(String field)` retrieves a value from this instance.
`protected void`	`setAnnotationLinks(Set<FilesetAnnotationLink> annotationLinks)` setter for annotationLinks should be avoided.
`protected void`	`setAnnotationLinksCountPerOwner(Map<Long,Long> map)`
`protected void`	`setDetails(Details details)` Use the `Details.copy(ome.model.internal.Details)` or `Details.shallowCopy(ome.model.internal.Details)` methods to set the `Fileset.Details` instance instead.
`FilesetEntry`	`setFilesetEntry(int index, FilesetEntry element)` Sets the ome.model.fs.FilesetEntry at the given index.
`FilesetJobLink`	`setFilesetJobLink(int index, FilesetJobLink element)` Sets the ome.model.fs.FilesetJobLink at the given index.
`void`	`setId(Long id)` usually unneeded.
`protected void`	`setImages(Set<Image> images)` setter for images should be avoided.
`protected void`	`setJobLinks(List<FilesetJobLink> jobLinks)` setter for jobLinks should be avoided.
`protected void`	`setJobLinksCountPerOwner(Map<Long,Long> map)`
`FilesetEntry`	`setPrimaryFilesetEntry(FilesetEntry element)` Swaps the first element of usedFiles with the first instance of the given element.
`FilesetJobLink`	`setPrimaryFilesetJobLink(FilesetJobLink element)` Swaps the first element of jobLinks with the first instance of the given element.
`void`	`setTemplatePrefix(String templatePrefix)`
`protected void`	`setUsedFiles(List<FilesetEntry> usedFiles)` setter for usedFiles should be avoided.
`void`	`setVersion(Integer version)` use with caution.
`int`	`sizeOfAnnotationLinks()` returns the size of annotationLinks.
`int`	`sizeOfImages()` returns the size of images.
`int`	`sizeOfJobLinks()` returns the size of jobLinks.
`int`	`sizeOfUsedFiles()` returns the size of usedFiles.
`protected void`	`throwNullCollectionException(String propertyName)`
`String`	`toString()`
`void`	`unlinkAnnotation(Annotation removal)` unlinks all ome.model.annotations.Annotation instances from this instance.
`void`	`unlinkJob(Job removal)` unlinks all ome.model.jobs.Job instances from this instance.
`void`	`unload()` set the loaded field to false, and set all non-ID fields to null.
`Collection<FilesetAnnotationLink>`	`unmodifiableAnnotationLinks()` Returns an unmodifiable collection-view
`Collection<Image>`	`unmodifiableImages()` Returns an unmodifiable collection-view
`Collection<FilesetJobLink>`	`unmodifiableJobLinks()` Returns an unmodifiable collection-view
`Collection<FilesetEntry>`	`unmodifiableUsedFiles()` Returns an unmodifiable collection-view
`Validation`	`validate()` calls the class-specific validator for this instance and returns the `Validation` object.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - OWNER_FILTER
```
public static final String OWNER_FILTER
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER
```
public static final String GROUP_FILTER
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER
```
public static final String EVENT_FILTER
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER
```
public static final String PERMS_FILTER
```
    See Also:
    
    Constant Field Values
  - ID
```
public static final String ID
```
    See Also:
    
    Constant Field Values
  - id
```
protected Long id
```
  - VERSION
```
public static final String VERSION
```
    See Also:
    
    Constant Field Values
  - version
```
protected Integer version
```
  - usedFiles
```
protected List<FilesetEntry> usedFiles
```
  - OWNER_FILTER_USEDFILES
```
public static final String OWNER_FILTER_USEDFILES
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_USEDFILES
```
public static final String GROUP_FILTER_USEDFILES
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_USEDFILES
```
public static final String EVENT_FILTER_USEDFILES
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_USEDFILES
```
public static final String PERMS_FILTER_USEDFILES
```
    See Also:
    
    Constant Field Values
  - images
```
protected Set<Image> images
```
  - OWNER_FILTER_IMAGES
```
public static final String OWNER_FILTER_IMAGES
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_IMAGES
```
public static final String GROUP_FILTER_IMAGES
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_IMAGES
```
public static final String EVENT_FILTER_IMAGES
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_IMAGES
```
public static final String PERMS_FILTER_IMAGES
```
    See Also:
    
    Constant Field Values
  - jobLinks
```
protected List<FilesetJobLink> jobLinks
```
  - OWNER_FILTER_JOBLINKS
```
public static final String OWNER_FILTER_JOBLINKS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_JOBLINKS
```
public static final String GROUP_FILTER_JOBLINKS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_JOBLINKS
```
public static final String EVENT_FILTER_JOBLINKS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_JOBLINKS
```
public static final String PERMS_FILTER_JOBLINKS
```
    See Also:
    
    Constant Field Values
  - templatePrefix
```
protected String templatePrefix
```
  - annotationLinks
```
protected Set<FilesetAnnotationLink> annotationLinks
```
  - OWNER_FILTER_ANNOTATIONLINKS
```
public static final String OWNER_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - GROUP_FILTER_ANNOTATIONLINKS
```
public static final String GROUP_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - EVENT_FILTER_ANNOTATIONLINKS
```
public static final String EVENT_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - PERMS_FILTER_ANNOTATIONLINKS
```
public static final String PERMS_FILTER_ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - details
```
protected Details details
```
  - USEDFILES
```
public static final String USEDFILES
```
    See Also:
    
    Constant Field Values
  - IMAGES
```
public static final String IMAGES
```
    See Also:
    
    Constant Field Values
  - JOBLINKSCOUNTPEROWNER
```
public static final String JOBLINKSCOUNTPEROWNER
```
    See Also:
    
    Constant Field Values
  - JOBLINKS
```
public static final String JOBLINKS
```
    See Also:
    
    Constant Field Values
  - TEMPLATEPREFIX
```
public static final String TEMPLATEPREFIX
```
    See Also:
    
    Constant Field Values
  - ANNOTATIONLINKSCOUNTPEROWNER
```
public static final String ANNOTATIONLINKSCOUNTPEROWNER
```
    See Also:
    
    Constant Field Values
  - ANNOTATIONLINKS
```
public static final String ANNOTATIONLINKS
```
    See Also:
    
    Constant Field Values
  - DETAILS
```
public static final String DETAILS
```
    See Also:
    
    Constant Field Values
  - FIELDS
```
public static final Set<String> FIELDS
```
  - _dynamicFields
```
protected Map<String,Object> _dynamicFields
```
  - _loaded
```
protected boolean _loaded
```
- Constructor Detail
  - Fileset
```
public Fileset()
```
  - Fileset
```
protected Fileset(Long id)
```
  - Fileset
```
public Fileset(Long id,
               boolean loaded)
```
    Main constructor.
  - Fileset
```
public Fileset(String _templatePrefix)
```
- Method Detail
  - getId
```
@DocumentId
public Long getId()
```
    The DB unique identifier for this object. You are not responsible for setting the id; however, it can be useful for creating "unloaded" versions of your objects. Each top-level entity contains an id field of type long. For all objects returned from the server, this value will be non-null, which doesn't necessarily hold for the other fields.
    
    Specified by:
    
    getId in interface IObject
    
    Returns:
    
    Long primary key. May be null.
  - setId
```
public void setId(Long id)
```
    Description copied from interface: IObject
    
    usually unneeded. Ids are managed by the backend.
    
    Specified by:
    
    setId in interface IObject
    
    Parameters:
    
    id - Long value for this id.
  - getVersion
```
public Integer getVersion()
```
    This version number is controlled by the database for optimisitic locking.
    
    Specified by:
    
    getVersion in interface IMutable
  - setVersion
```
public void setVersion(Integer version)
```
    Description copied from interface: IMutable
    
    use with caution. In general, the version should only be altered by the backend. In the best case, an exception will be thrown for a version not equal to the current DB value. In the worst (though rare) case, the new version could match the database, and override optimistic lock checks that are supposed to prevent data loss.
    
    Specified by:
    
    setVersion in interface IMutable
    
    Parameters:
    
    version - Value for this objects version.
  - getUsedFiles
```
protected List<FilesetEntry> getUsedFiles()
```
    returns usedFiles . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many List ome.model.fs.Fileset.usedFiles (ome.model.fs.FilesetEntry) Values are indexed by the column "index" on ome.model.fs.FilesetEntry
  - setUsedFiles
```
protected void setUsedFiles(List<FilesetEntry> usedFiles)
```
    setter for usedFiles should be avoided. Does not fulfill normal semantics.
  - sizeOfUsedFiles
```
public int sizeOfUsedFiles()
```
    returns the size of usedFiles. If less than zero, the Set was null.
  - iterateUsedFiles
```
public Iterator<FilesetEntry> iterateUsedFiles()
```
    should be used rather than accessing the usedFiles set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfUsedFiles() is less than zero.
  - unmodifiableUsedFiles
```
public Collection<FilesetEntry> unmodifiableUsedFiles()
```
    Returns an unmodifiable collection-view
  - collectUsedFiles
```
public <E> List<E> collectUsedFiles(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.fs.FilesetEntry while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateUsedFiles() internally and so will return a value even if the underlying collection is null.
  - addFilesetEntry
```
public void addFilesetEntry(FilesetEntry target)
```
    use instead of setUsedFiles . Makes the necessary call on ome.model.fs.FilesetEntry as well.
  - addFilesetEntrySet
```
public void addFilesetEntrySet(Collection<FilesetEntry> targets)
```
    use like addFilesetEntry.
  - removeFilesetEntry
```
public void removeFilesetEntry(FilesetEntry target)
```
    removes a single element from this set and makes the inverse call on ome.model.fs.FilesetEntry
  - removeFilesetEntrySet
```
public void removeFilesetEntrySet(Collection<FilesetEntry> targets)
```
    use like removeFilesetEntry
  - clearUsedFiles
```
public void clearUsedFiles()
```
    clears the set.
  - getFilesetEntry
```
public FilesetEntry getFilesetEntry(int index)
                             throws IndexOutOfBoundsException
```
    Gets the ome.model.fs.FilesetEntry at the given index.
    
    Throws:
    
    IndexOutOfBoundsException
  - setFilesetEntry
```
public FilesetEntry setFilesetEntry(int index,
                                    FilesetEntry element)
                             throws IndexOutOfBoundsException
```
    Sets the ome.model.fs.FilesetEntry at the given index. Adheres to the List.set(int, Object) contract. To extend the list, use addFilesetEntry(FilesetEntry).
    
    Throws:
    
    IndexOutOfBoundsException
    
    See Also:
    
    List.set(int, Object)
  - getPrimaryFilesetEntry
```
public FilesetEntry getPrimaryFilesetEntry()
                                    throws IndexOutOfBoundsException
```
    Gets the first element of usedFiles which can be interpreted as the primary or default element in some situations. If there is not first element, an IndexOutOfBoundsException is throws. This method will also throw an ApiUsageException if the collection is unloaded. See sizeOfUsedFiles() for more information.
    
    Throws:
    
    IndexOutOfBoundsException
  - setPrimaryFilesetEntry
```
public FilesetEntry setPrimaryFilesetEntry(FilesetEntry element)
                                    throws IndexOutOfBoundsException
```
    Swaps the first element of usedFiles with the first instance of the given element. If the given element is not in the list, an IndexOutOfBoundsException will be thrown. Returns the swapped element. This method will also throw an ApiUsageException if the collection is unloaded. See sizeOfUsedFiles() for more information.
    
    Throws:
    
    IndexOutOfBoundsException
  - getImages
```
protected Set<Image> getImages()
```
    returns images . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.fs.Fileset.images (ome.model.core.Image)
  - setImages
```
protected void setImages(Set<Image> images)
```
    setter for images should be avoided. Does not fulfill normal semantics.
  - sizeOfImages
```
public int sizeOfImages()
```
    returns the size of images. If less than zero, the Set was null.
  - iterateImages
```
public Iterator<Image> iterateImages()
```
    should be used rather than accessing the images set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfImages() is less than zero.
  - unmodifiableImages
```
public Collection<Image> unmodifiableImages()
```
    Returns an unmodifiable collection-view
  - collectImages
```
public <E> List<E> collectImages(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.core.Image while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateImages() internally and so will return a value even if the underlying collection is null.
  - addImage
```
public void addImage(Image target)
```
    use instead of setImages . Makes the necessary call on ome.model.core.Image as well.
  - addImageSet
```
public void addImageSet(Collection<Image> targets)
```
    use like addImage.
  - removeImage
```
public void removeImage(Image target)
```
    removes a single element from this set and makes the inverse call on ome.model.core.Image
  - removeImageSet
```
public void removeImageSet(Collection<Image> targets)
```
    use like removeImage
  - clearImages
```
public void clearImages()
```
    clears the set.
  - getJobLinks
```
protected List<FilesetJobLink> getJobLinks()
```
    returns jobLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many List ome.model.fs.Fileset.jobLinks (ome.model.fs.FilesetJobLink) Values are indexed by the column "index" on ome.model.fs.FilesetJobLink
  - setJobLinks
```
protected void setJobLinks(List<FilesetJobLink> jobLinks)
```
    setter for jobLinks should be avoided. Does not fulfill normal semantics.
  - sizeOfJobLinks
```
public int sizeOfJobLinks()
```
    returns the size of jobLinks. If less than zero, the Set was null.
  - iterateJobLinks
```
public Iterator<FilesetJobLink> iterateJobLinks()
```
    should be used rather than accessing the jobLinks set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfJobLinks() is less than zero.
  - unmodifiableJobLinks
```
public Collection<FilesetJobLink> unmodifiableJobLinks()
```
    Returns an unmodifiable collection-view
  - collectJobLinks
```
public <E> List<E> collectJobLinks(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.fs.FilesetJobLink while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateJobLinks() internally and so will return a value even if the underlying collection is null.
  - addFilesetJobLink
```
public void addFilesetJobLink(FilesetJobLink target)
```
    use instead of setJobLinks . Makes the necessary call on ome.model.fs.FilesetJobLink as well.
  - addFilesetJobLinkSet
```
public void addFilesetJobLinkSet(Collection<FilesetJobLink> targets)
```
    use like addFilesetJobLink.
  - removeFilesetJobLink
```
public void removeFilesetJobLink(FilesetJobLink target)
```
    removes a single element from this set and makes the inverse call on ome.model.fs.FilesetJobLink
  - removeFilesetJobLinkSet
```
public void removeFilesetJobLinkSet(Collection<FilesetJobLink> targets)
```
    use like removeFilesetJobLink
  - getFilesetJobLink
```
public FilesetJobLink getFilesetJobLink(int index)
                                 throws IndexOutOfBoundsException
```
    Gets the ome.model.fs.FilesetJobLink at the given index.
    
    Throws:
    
    IndexOutOfBoundsException
  - setFilesetJobLink
```
public FilesetJobLink setFilesetJobLink(int index,
                                        FilesetJobLink element)
                                 throws IndexOutOfBoundsException
```
    Sets the ome.model.fs.FilesetJobLink at the given index. Adheres to the List.set(int, Object) contract. To extend the list, use addFilesetJobLink(FilesetJobLink).
    
    Throws:
    
    IndexOutOfBoundsException
    
    See Also:
    
    List.set(int, Object)
  - getPrimaryFilesetJobLink
```
public FilesetJobLink getPrimaryFilesetJobLink()
                                        throws IndexOutOfBoundsException
```
    Gets the first element of jobLinks which can be interpreted as the primary or default element in some situations. If there is not first element, an IndexOutOfBoundsException is throws. This method will also throw an ApiUsageException if the collection is unloaded. See sizeOfJobLinks() for more information.
    
    Throws:
    
    IndexOutOfBoundsException
  - setPrimaryFilesetJobLink
```
public FilesetJobLink setPrimaryFilesetJobLink(FilesetJobLink element)
                                        throws IndexOutOfBoundsException
```
    Swaps the first element of jobLinks with the first instance of the given element. If the given element is not in the list, an IndexOutOfBoundsException will be thrown. Returns the swapped element. This method will also throw an ApiUsageException if the collection is unloaded. See sizeOfJobLinks() for more information.
    
    Throws:
    
    IndexOutOfBoundsException
  - linkJob
```
public FilesetJobLink linkJob(Job addition)
```
    Adds a ome.model.fs.FilesetJobLink to jobLinks . This entails changing our jobLinks Set, creating a new ome.model.fs.FilesetJobLink and calling linkJob on the ome.model.jobs.Job.
  - addFilesetJobLink
```
public void addFilesetJobLink(FilesetJobLink link,
                              boolean bothSides)
```
    Adds a ome.model.fs.FilesetJobLink to jobLinks, allowing for recursion -- whether or not addFilesetJobLink will be called on the addition if it is loaded
  - linkedJobIterator
```
public Iterator<Job> linkedJobIterator()
```
    provides an iterator over the parent values of the jobLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in an ConcurrentModificationException. Use linkedJobList() instead.
  - findFilesetJobLink
```
public Set<FilesetJobLink> findFilesetJobLink(Job target)
```
    find all ome.model.fs.FilesetJobLink which have the argument as their child.
  - linkedJobList
```
public List<Job> linkedJobList()
```
    produces a List-copy of the underlying collection. Unlike, linkedJobIterator(), while using the returned List, modifications can be made to the underlying collection without throwing ConcurrentModificationException.
  - eachLinkedJob
```
public <E> List<E> eachLinkedJob(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.jobs.Job while collecting the results. If block == null, then the iterator values themselves are collected.
  - unlinkJob
```
public void unlinkJob(Job removal)
```
    unlinks all ome.model.jobs.Job instances from this instance.
  - removeFilesetJobLink
```
public void removeFilesetJobLink(FilesetJobLink link,
                                 boolean bothSides)
```
    removes the given FilesetJobLink from jobLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
  - clearJobLinks
```
public void clearJobLinks()
```
    clears the set.
  - setJobLinksCountPerOwner
```
protected void setJobLinksCountPerOwner(Map<Long,Long> map)
```
  - getJobLinksCountPerOwner
```
public Map<Long,Long> getJobLinksCountPerOwner()
```
    If fetched, returns the count(*) of ome.model.fs.FilesetJobLink that a user has. If unfetched, returns null. No entries in the collection should be null.
  - getTemplatePrefix
```
@Field(index=TOKENIZED) @Field(index=TOKENIZED,name="combined_fields")
public String getTemplatePrefix()
```
    Simple field ome.model.fs.Fileset.templatePrefix (java.lang.String)
  - setTemplatePrefix
```
public void setTemplatePrefix(String templatePrefix)
```
  - getAnnotationLinks
```
protected Set<FilesetAnnotationLink> getAnnotationLinks()
```
    returns annotationLinks . You should not modify this collection unless you know what you are doing. Use the iterate method instead. one-to-many Set ome.model.fs.Fileset.annotationLinks (ome.model.annotations.FilesetAnnotationLink)
  - setAnnotationLinks
```
protected void setAnnotationLinks(Set<FilesetAnnotationLink> annotationLinks)
```
    setter for annotationLinks should be avoided. Does not fulfill normal semantics.
  - sizeOfAnnotationLinks
```
public int sizeOfAnnotationLinks()
```
    returns the size of annotationLinks. If less than zero, the Set was null.
    
    Specified by:
    
    sizeOfAnnotationLinks in interface IAnnotated
  - iterateAnnotationLinks
```
public Iterator<FilesetAnnotationLink> iterateAnnotationLinks()
```
    should be used rather than accessing the annotationLinks set directly. This method will never return null, but rather will return an instance of EmptyIterator. To test for a null collection, see of sizeOfAnnotationLinks() is less than zero.
    
    Specified by:
    
    iterateAnnotationLinks in interface IAnnotated
  - unmodifiableAnnotationLinks
```
public Collection<FilesetAnnotationLink> unmodifiableAnnotationLinks()
```
    Returns an unmodifiable collection-view
    
    Specified by:
    
    unmodifiableAnnotationLinks in interface IAnnotated
  - collectAnnotationLinks
```
public <E> List<E> collectAnnotationLinks(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.annotations.FilesetAnnotationLink while collecting the results. If block == null, then the iterator values themselves are collected. This method uses iterateAnnotationLinks() internally and so will return a value even if the underlying collection is null.
    
    Specified by:
    
    collectAnnotationLinks in interface IAnnotated
  - addFilesetAnnotationLink
```
public void addFilesetAnnotationLink(FilesetAnnotationLink target)
```
    use instead of setAnnotationLinks . Makes the necessary call on ome.model.annotations.FilesetAnnotationLink as well.
  - addFilesetAnnotationLinkSet
```
public void addFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink> targets)
```
    use like addFilesetAnnotationLink.
  - removeFilesetAnnotationLink
```
public void removeFilesetAnnotationLink(FilesetAnnotationLink target)
```
    removes a single element from this set and makes the inverse call on ome.model.annotations.FilesetAnnotationLink
  - removeFilesetAnnotationLinkSet
```
public void removeFilesetAnnotationLinkSet(Collection<FilesetAnnotationLink> targets)
```
    use like removeFilesetAnnotationLink
  - linkAnnotation
```
public FilesetAnnotationLink linkAnnotation(Annotation addition)
```
    Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks . This entails changing our annotationLinks Set, creating a new ome.model.annotations.FilesetAnnotationLink and calling linkAnnotation on the ome.model.annotations.Annotation.
    
    Specified by:
    
    linkAnnotation in interface IAnnotated
  - addFilesetAnnotationLink
```
public void addFilesetAnnotationLink(FilesetAnnotationLink link,
                                     boolean bothSides)
```
    Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks, allowing for recursion -- whether or not addFilesetAnnotationLink will be called on the addition if it is loaded
  - linkedAnnotationIterator
```
public Iterator<Annotation> linkedAnnotationIterator()
```
    provides an iterator over the parent values of the annotationLinks. Like with most Collection iterators, modifications to the underlying collection while iterating will result in an ConcurrentModificationException. Use linkedAnnotationList() instead.
    
    Specified by:
    
    linkedAnnotationIterator in interface IAnnotated
  - findFilesetAnnotationLink
```
public Set<FilesetAnnotationLink> findFilesetAnnotationLink(Annotation target)
```
    find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.
  - linkedAnnotationList
```
public List<Annotation> linkedAnnotationList()
```
    produces a List-copy of the underlying collection. Unlike, linkedAnnotationIterator(), while using the returned List, modifications can be made to the underlying collection without throwing ConcurrentModificationException.
    
    Specified by:
    
    linkedAnnotationList in interface IAnnotated
  - eachLinkedAnnotation
```
public <E> List<E> eachLinkedAnnotation(CBlock<E> block)
```
    takes a CBlock and calls the block once for each ome.model.annotations.Annotation while collecting the results. If block == null, then the iterator values themselves are collected.
    
    Specified by:
    
    eachLinkedAnnotation in interface IAnnotated
  - unlinkAnnotation
```
public void unlinkAnnotation(Annotation removal)
```
    unlinks all ome.model.annotations.Annotation instances from this instance.
    
    Specified by:
    
    unlinkAnnotation in interface IAnnotated
  - removeFilesetAnnotationLink
```
public void removeFilesetAnnotationLink(FilesetAnnotationLink link,
                                        boolean bothSides)
```
    removes the given FilesetAnnotationLink from annotationLinks, allowing for recursion -- whether or not the removal will call unlinkFileset again if loaded.
  - clearAnnotationLinks
```
public void clearAnnotationLinks()
```
    clears the set.
    
    Specified by:
    
    clearAnnotationLinks in interface IAnnotated
  - setAnnotationLinksCountPerOwner
```
protected void setAnnotationLinksCountPerOwner(Map<Long,Long> map)
```
  - getAnnotationLinksCountPerOwner
```
public Map<Long,Long> getAnnotationLinksCountPerOwner()
```
    If fetched, returns the count(*) of ome.model.annotations.FilesetAnnotationLink that a user has. If unfetched, returns null. No entries in the collection should be null.
  - getDetails
```
public Details getDetails()
```
    The details of this object correspond to low-level system information. Owner, permissions, Details is always guaranteed to be non-null, unless the user actively nulls it. Every entity also contains a Detail reference, which doesn't refer to a separate table but rather to a collection of fields collected into a Hibernate "component" which is embedded in the object. HQL queries which refer to the Details component cannot directly fetch the entity like this: select o from Object join fetch o.details but rather each field of the Details instance must be explicitly joined: select o from Object join fetch o.details.owner It should also be noted that not all types have all the fields which are present on Details. For example, select e from Experimenter e join fetch e.details.owner will fail. Experimenter has no owner, for obvious reasons. Note: subclasses of this class will return a subclasse of the Details type.
    
    Specified by:
    
    getDetails in interface IObject
  - setDetails
```
protected void setDetails(Details details)
```
    Use the Details.copy(ome.model.internal.Details) or Details.shallowCopy(ome.model.internal.Details) methods to set the Fileset.Details instance instead.
  - isValid
```
public boolean isValid()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the value from Validation.isValid()
    
    Specified by:
    
    isValid in interface IObject
  - validate
```
public Validation validate()
```
    Description copied from interface: IObject
    
    calls the class-specific validator for this instance and returns the Validation object.
    
    Specified by:
    
    validate in interface IObject
    
    Returns:
    
    Validation collecting parameter.
  - newInstance
```
public Fileset newInstance()
```
  - proxy
```
public Fileset proxy()
```
  - acceptFilter
```
public boolean acceptFilter(Filter __filter)
```
    Specified by:
    
    acceptFilter in interface Filterable
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - fields
```
public Set<String> fields()
```
    Description copied from interface: IObject
    
    returns a Set of field names that belong to this class
    
    Specified by:
    
    fields in interface IObject
  - retrieve
```
public Object retrieve(String field)
```
    Description copied from interface: IObject
    
    retrieves a value from this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be retrieved from a lazy-loaded map filled by calls to IObject.putAt(String, Object)
    
    Specified by:
    
    retrieve in interface IObject
  - putAt
```
public void putAt(String field,
                  Object value)
```
    Description copied from interface: IObject
    
    stores a value in this instance. Values for field which match a field of this instance will be delegated to the accessors. Otherwise, values will be stored in a lazy-loaded map.
    
    Specified by:
    
    putAt in interface IObject
    
    Parameters:
    
    field - Field name
    
    value - Any object to be stored.
  - isLoaded
```
public boolean isLoaded()
```
    Description copied from interface: IObject
    
    transient field (not stored in the DB) which specifies whether this object has been loaded from the DB or is only a wrapper around the ID.
    
    Specified by:
    
    isLoaded in interface IObject
  - errorIfUnloaded
```
protected void errorIfUnloaded()
```
  - unload
```
public void unload()
```
    Description copied from interface: IObject
    
    set the loaded field to false, and set all non-ID fields to null. Subsequent calls to all accessors other than getId/setId will throw an ApiUsageException
    
    Specified by:
    
    unload in interface IObject
  - getGraphHolder
```
public final GraphHolder getGraphHolder()
```
    Description copied from interface: IObject
    
    retrieves the GraphHolder for this entity. If the GraphHolder has not been actively set, a new one will be instatiated.
    
    Specified by:
    
    getGraphHolder in interface IObject
    
    Returns:
    
    Non-null GraphHolder
  - throwNullCollectionException
```
protected void throwNullCollectionException(String propertyName)
```

Class Fileset

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

OWNER_FILTER

GROUP_FILTER

EVENT_FILTER

PERMS_FILTER

ID

id

VERSION

version

usedFiles

OWNER_FILTER_USEDFILES

GROUP_FILTER_USEDFILES

EVENT_FILTER_USEDFILES

PERMS_FILTER_USEDFILES

images

OWNER_FILTER_IMAGES

GROUP_FILTER_IMAGES

EVENT_FILTER_IMAGES

PERMS_FILTER_IMAGES

jobLinks

OWNER_FILTER_JOBLINKS

GROUP_FILTER_JOBLINKS

EVENT_FILTER_JOBLINKS

PERMS_FILTER_JOBLINKS

templatePrefix

annotationLinks

OWNER_FILTER_ANNOTATIONLINKS

GROUP_FILTER_ANNOTATIONLINKS

EVENT_FILTER_ANNOTATIONLINKS

PERMS_FILTER_ANNOTATIONLINKS

details

USEDFILES

IMAGES

JOBLINKSCOUNTPEROWNER

JOBLINKS

TEMPLATEPREFIX

ANNOTATIONLINKSCOUNTPEROWNER

ANNOTATIONLINKS

DETAILS

FIELDS

_dynamicFields

_loaded

Constructor Detail

Fileset

Fileset

Fileset

Fileset

Method Detail

getId

setId

getVersion

setVersion

getUsedFiles

setUsedFiles

sizeOfUsedFiles

iterateUsedFiles

unmodifiableUsedFiles

collectUsedFiles

addFilesetEntry

addFilesetEntrySet

removeFilesetEntry

removeFilesetEntrySet

clearUsedFiles

getFilesetEntry

setFilesetEntry

getPrimaryFilesetEntry

setPrimaryFilesetEntry

getImages

setImages

sizeOfImages

iterateImages

unmodifiableImages

collectImages

addImage