| Package | Description | 
|---|---|
| ome.api | 
 Contains the central verbs of the Omero System. 
 | 
| ome.logic | 
 The central repository of implementations which will be accessible through this server. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Map<Boolean,List<Long>> | 
IRenderingSettings.applySettingsToImages(long from,
                     List<Long> to)
Applies rendering settings to a given  
Image. | 
<T extends IObject> | 
IRenderingSettings.applySettingsToSet(long from,
                  Class<T> type,
                  Set<Long> nodeIds)
Applies rendering settings to one or many containers. 
 | 
Long | 
IPixels.copyAndResizeImage(long imageId,
                  Integer sizeX,
                  Integer sizeY,
                  Integer sizeZ,
                  Integer sizeT,
                  List<Integer> channelList,
                  String name,
                  boolean copyStats)
Copies the metadata, and only the metadata linked to a Image
 object into a new Image object of equal or differing size across one
 or many of its three physical dimensions or temporal dimension. 
 | 
Long | 
IPixels.copyAndResizePixels(long pixelsId,
                   Integer sizeX,
                   Integer sizeY,
                   Integer sizeZ,
                   Integer sizeT,
                   List<Integer> channelList,
                   String methodology,
                   boolean copyStats)
Copies the metadata, and only the metadata linked to a Pixels
 object into a new Pixels object of equal or differing size across one
 or many of its three physical dimensions or temporal dimension. 
 | 
Long | 
IMetadata.countSpecifiedAnnotations(Class type,
                         Set<String> include,
                         Set<String> exclude,
                         Parameters options)
Counts the number of annotation of a given type. 
 | 
Long | 
IMetadata.countSpecifiedAnnotations(Class type,
                         Set<String> include,
                         Set<String> exclude,
                         Parameters options)
Counts the number of annotation of a given type. 
 | 
Long | 
IPixels.createImage(int sizeX,
           int sizeY,
           int sizeZ,
           int sizeT,
           List<Integer> channelList,
           PixelsType pixelType,
           String name,
           String description)
Creates the metadata, and only the metadata linked to an Image
 object. 
 | 
<T extends IObject> | 
IShare.createShare(String description,
           Timestamp expiration,
           List<T> items,
           List<Experimenter> exps,
           List<String> guests,
           boolean enabled)
 | 
<T extends IObject> | 
IShare.createShare(String description,
           Timestamp expiration,
           List<T> items,
           List<Experimenter> exps,
           List<String> guests,
           boolean enabled)
 | 
<T extends IObject> | 
IShare.createShare(String description,
           Timestamp expiration,
           List<T> items,
           List<Experimenter> exps,
           List<String> guests,
           boolean enabled)
 | 
void | 
ThumbnailStore.createThumbnailsByLongestSideSet(Integer size,
                                Set<Long> pixelsIds)
Creates thumbnails for a number of pixels sets using a given set of 
 rendering settings (RenderingDef) in the on-disk cache. 
 | 
void | 
IDelete.deleteImages(Set<Long> ids,
            boolean force)
Deletes several  
Image instances within a single transaction via
 the IDelete.deleteImage(long, boolean) method. | 
<T extends IObject> | 
IContainer.findContainerHierarchies(Class<T> rootNodeType,
                        Set<Long> imagesIds,
                        Parameters options)
Retrieves hierarchy trees in various hierarchies that contain the
 specified Images. 
 | 
Map | 
IContainer.getCollectionCount(String type,
                  String property,
                  Set<Long> ids,
                  Parameters options)
Counts the number of members in a collection for a given object. 
 | 
Map<Long,Long> | 
IShare.getCommentCount(Set<Long> shareIds)
Returns a map from share id to comment count. 
 | 
byte[] | 
RawPixelsStore.getHypercube(List<Integer> offset,
            List<Integer> size,
            List<Integer> step)  | 
byte[] | 
RawPixelsStore.getHypercube(List<Integer> offset,
            List<Integer> size,
            List<Integer> step)  | 
byte[] | 
RawPixelsStore.getHypercube(List<Integer> offset,
            List<Integer> size,
            List<Integer> step)  | 
<T extends IObject> | 
IContainer.getImages(Class<T> rootNodeType,
         Set<Long> rootNodeIds,
         Parameters options)
Retrieve a user's (or all users') images within any given container. 
 | 
Map<Long,Long> | 
IShare.getMemberCount(Set<Long> shareIds)
Returns a map from share id to the count of total members (including the
 owner). 
 | 
Map<Long,Long> | 
IMetadata.getTaggedObjectsCount(Set<Long> tagIds,
                     Parameters options)
Returns a map whose key is a tag's id and the value the number of
 Projects, Datasets, and Images linked to that tag. 
 | 
Map<Long,byte[]> | 
ThumbnailStore.getThumbnailByLongestSideSet(Integer size,
                            Set<Long> pixelsIds)
Retrieves a number of thumbnails for pixels sets using given sets of 
 rendering settings (RenderingDef). 
 | 
Map<Long,byte[]> | 
ThumbnailStore.getThumbnailSet(Integer sizeX,
               Integer sizeY,
               Set<Long> pixelsIds)
Retrieves a number of thumbnails for pixels sets using given sets of 
 rendering settings (RenderingDef). 
 | 
<A extends Annotation> | 
IMetadata.loadAnnotation(Set<Long> annotationIds)
Loads the specified annotations. 
 | 
<T extends IObject,A extends Annotation> | 
IMetadata.loadAnnotations(Class<T> nodeType,
               Set<Long> rootNodeIds,
               Set<String> annotationType,
               Set<Long> annotatorIds,
               Parameters options)
Loads all the annotations of given types, 
 that have been attached to the specified  
rootNodes 
 for the specified annotatorIds. | 
<T extends IObject,A extends Annotation> | 
IMetadata.loadAnnotations(Class<T> nodeType,
               Set<Long> rootNodeIds,
               Set<String> annotationType,
               Set<Long> annotatorIds,
               Parameters options)
Loads all the annotations of given types, 
 that have been attached to the specified  
rootNodes 
 for the specified annotatorIds. | 
<T extends IObject,A extends Annotation> | 
IMetadata.loadAnnotations(Class<T> nodeType,
               Set<Long> rootNodeIds,
               Set<String> annotationType,
               Set<Long> annotatorIds,
               Parameters options)
Loads all the annotations of given types, 
 that have been attached to the specified  
rootNodes 
 for the specified annotatorIds. | 
Set<LogicalChannel> | 
IMetadata.loadChannelAcquisitionData(Set<Long> ids)
Loads the  
logical channels and the acquisition metadata 
 related to them. | 
<T extends IObject> | 
IContainer.loadContainerHierarchy(Class<T> rootNodeType,
                      Set<Long> rootNodeIds,
                      Parameters options)
Retrieves hierarchy trees rooted by a given node (unless orphan is
 specified -- See below)
 
 This method also retrieves the Experimenters linked to the objects in the
 tree. 
 | 
Map<Long,Set<IObject>> | 
IMetadata.loadLogFiles(Class<? extends IObject> rootNodeType,
            Set<Long> ids)
Find the original file IDs for the import logs corresponding to the given Image or Fileset IDs. 
 | 
<A extends Annotation> | 
IMetadata.loadSpecifiedAnnotations(Class type,
                        Set<String> include,
                        Set<String> exclude,
                        Parameters options)
Loads all the annotations of a given type. 
 | 
<A extends Annotation> | 
IMetadata.loadSpecifiedAnnotations(Class type,
                        Set<String> include,
                        Set<String> exclude,
                        Parameters options)
Loads all the annotations of a given type. 
 | 
<A extends Annotation> | 
IMetadata.loadSpecifiedAnnotationsLinkedTo(Class type,
                                Set<String> include,
                                Set<String> exclude,
                                Class rootNodeType,
                                Set<Long> rootNodeIds,
                                Parameters options)
Loads the annotations of a given type linked to the specified objects. 
 | 
<A extends Annotation> | 
IMetadata.loadSpecifiedAnnotationsLinkedTo(Class type,
                                Set<String> include,
                                Set<String> exclude,
                                Class rootNodeType,
                                Set<Long> rootNodeIds,
                                Parameters options)
Loads the annotations of a given type linked to the specified objects. 
 | 
<A extends Annotation> | 
IMetadata.loadSpecifiedAnnotationsLinkedTo(Class type,
                                Set<String> include,
                                Set<String> exclude,
                                Class rootNodeType,
                                Set<Long> rootNodeIds,
                                Parameters options)
Loads the annotations of a given type linked to the specified objects. 
 | 
Map<Long,Set<IObject>> | 
IMetadata.loadTagContent(Set<Long> tagIds,
              Parameters options)
Loads the Tag Set if the id is specified otherwise loads all the Tag
 Set. 
 | 
void | 
RawPixelsStore.prepare(Set<Long> pixelsIds)
Prepares the stateful service with a cache of loaded Pixels objects. 
 | 
long | 
IProjection.projectPixels(long pixelsId,
             PixelsType pixelsType,
             int algorithm,
             int tStart,
             int tEnd,
             List<Integer> channels,
             int stepping,
             int zStart,
             int zEnd,
             String name)
Performs a projection through selected optical sections and optical
 sections for a given set of time points of a Pixels set. 
 | 
void | 
IShare.removeUsers(long shareId,
           List<Experimenter> exps)
Removes  
experimenters from
 share | 
<T extends IObject> | 
IRenderingSettings.resetDefaultsByOwnerInSet(Class<T> type,
                         Set<Long> nodeIds)
Resets the rendering settings of a given group of containers based on
 the owner's (essentially a copy). 
 | 
<T extends IObject> | 
IRenderingSettings.resetDefaultsInSet(Class<T> type,
                  Set<Long> nodeIds)
Resets a rendering settings back to one or many containers that are 
 specified by the rendering engine intelligent pretty good image
 (PG) logic. 
 | 
<T extends IObject> | 
IRenderingSettings.resetMinMaxInSet(Class<T> type,
                Set<Long> nodeIds)
Resets a the channel windows for one or many containers back to their
 global minimum and global maximum for the channel. 
 | 
void | 
IUpdate.saveCollection(Collection<IObject> graph)  | 
<T extends IObject> | 
IRenderingSettings.setOriginalSettingsInSet(Class<T> type,
                        Set<Long> nodeIds)
Resets a rendering settings back to channel global minimum and maximum
 for the specified containers. 
 | 
<T extends IEnum> | 
ITypes.updateEnumerations(List<T> listEnum)
updates enumeration value specified by object 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Map | 
MetadataImpl.getTaggedObjectsCount(Set<Long> tagIds,
                     Parameters options)  | 
<A extends Annotation> | 
MetadataImpl.loadAnnotation(Set<Long> annotationIds)  | 
Set | 
MetadataImpl.loadChannelAcquisitionData(Set<Long> ids)  | 
Map<Long,Set<IObject>> | 
MetadataImpl.loadLogFiles(Class<? extends IObject> rootNodeType,
            Set<Long> ids)  | 
<A extends Annotation> | 
MetadataImpl.loadSpecifiedAnnotationsLinkedTo(Class type,
                                Set<String> include,
                                Set<String> exclude,
                                Class rootNodeType,
                                Set<Long> rootNodeIds,
                                Parameters options)  | 
Map<Long,Set<IObject>> | 
MetadataImpl.loadTagContent(Set<Long> tagIds,
              Parameters options)  | 
                
                
Version: 5.2.6-ice35-b35
Copyright © 2016 The University of Dundee & Open Microscopy Environment. All Rights Reserved.