Package | Description |
---|---|
omero.gateway.facility | |
omero.gateway.util |
Modifier and Type | Method and Description |
---|---|
void |
DataManagerFacility.addImagesToDataset(SecurityContext ctx,
Collection<ImageData> images,
DatasetData ds)
Adds the
ImageData s to the given DatasetData |
void |
DataManagerFacility.addImageToDataset(SecurityContext ctx,
ImageData image,
DatasetData ds)
Adds the
ImageData to the given DatasetData |
<T extends AnnotationData> |
DataManagerFacility.attachAnnotation(SecurityContext ctx,
T annotation,
DataObject target)
Create/attach an
AnnotationData to a given DataObject |
DatasetData |
DataManagerFacility.createDataset(SecurityContext ctx,
DatasetData dataset,
ProjectData project)
Creates the
DatasetData on the server and attaches it
to the ProjectData (if not null ) (if the
project doesn't exist on the server yet, it will be created, too) |
ExperimenterData |
AdminFacility.createExperimenter(SecurityContext ctx,
ExperimenterData exp,
String username,
String password,
List<GroupData> groups,
boolean isAdmin,
boolean isGroupOwner)
Creates an experimenter and returns it.
|
GroupData |
AdminFacility.createGroup(SecurityContext ctx,
GroupData groupData,
ExperimenterData owner,
int permissions)
Creates a group and returns it.
|
CmdCallbackI |
DataManagerFacility.delete(SecurityContext ctx,
omero.model.IObject object)
Deletes the specified object asynchronously
|
CmdCallbackI |
DataManagerFacility.delete(SecurityContext ctx,
List<omero.model.IObject> objects)
Deletes the specified objects asynchronously
|
omero.cmd.Response |
DataManagerFacility.deleteObject(SecurityContext ctx,
omero.model.IObject object)
Deprecated.
Use the asynchronous method
DataManagerFacility.delete(SecurityContext, IObject) instead |
omero.cmd.Response |
DataManagerFacility.deleteObjects(SecurityContext ctx,
List<omero.model.IObject> objects)
Deprecated.
Use the asynchronous method
DataManagerFacility.delete(SecurityContext, List) instead |
List<File> |
TransferFacility.downloadImage(SecurityContext context,
String targetPath,
long imageId)
Downloads the original file of an image from the server.
|
omero.model.IObject |
BrowseFacility.findIObject(SecurityContext ctx,
omero.model.IObject o)
Retrieves an updated version of the specified object.
|
omero.model.IObject |
BrowseFacility.findIObject(SecurityContext ctx,
String klassName,
long id)
Retrieves an updated version of the specified object.
|
omero.model.IObject |
BrowseFacility.findIObject(SecurityContext ctx,
String klassName,
long id,
boolean allGroups)
Retrieves an updated version of the specified object.
|
<T extends DataObject> |
BrowseFacility.findObject(SecurityContext ctx,
Class<T> klass,
long id)
Retrieves an updated version of the specified object.
|
<T extends DataObject> |
BrowseFacility.findObject(SecurityContext ctx,
Class<T> klass,
long id,
boolean allGroups)
Retrieves an updated version of the specified object.
|
DataObject |
BrowseFacility.findObject(SecurityContext ctx,
String pojoName,
long id)
Retrieves an updated version of the specified object.
|
DataObject |
BrowseFacility.findObject(SecurityContext ctx,
String pojoName,
long id,
boolean allGroups)
Retrieves an updated version of the specified object.
|
List<AnnotationData> |
MetadataFacility.getAnnotations(SecurityContext ctx,
DataObject object)
Get all annotations for the given
DataObject |
List<AnnotationData> |
MetadataFacility.getAnnotations(SecurityContext ctx,
DataObject object,
List<Class<? extends AnnotationData>> annotationTypes,
List<Long> userIds)
Get the annotations for the given
DataObject |
Map<DataObject,List<AnnotationData>> |
MetadataFacility.getAnnotations(SecurityContext ctx,
List<? extends DataObject> objects,
List<Class<? extends AnnotationData>> annotationTypes,
List<Long> userIds)
Get the annotations for the given
DataObject s |
Set<GroupData> |
BrowseFacility.getAvailableGroups(SecurityContext ctx,
ExperimenterData user)
Retrieves the groups visible by the current experimenter.
|
List<ChannelData> |
MetadataFacility.getChannelData(SecurityContext ctx,
long imageId)
Get the
ChannelData for a specific image |
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx)
Loads all datasets
|
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx,
Collection<Long> ids)
Loads the datasets with the given ids
|
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx,
long ownerId)
Loads the datasets for a particular user
|
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the datasets with the given ids which belong to a particular user
|
Collection<DataObject> |
BrowseFacility.getHierarchy(SecurityContext ctx,
Class rootType,
List<Long> rootIDs,
omero.sys.Parameters options)
Retrieves hierarchy trees rooted by a given node.
|
Collection<DataObject> |
BrowseFacility.getHierarchy(SecurityContext ctx,
Class rootType,
long userId)
Retrieves hierarchy trees rooted by a given node.
|
ImageData |
BrowseFacility.getImage(SecurityContext ctx,
long id)
Loads a image
|
ImageData |
BrowseFacility.getImage(SecurityContext ctx,
long id,
ParametersI params)
Loads a image
|
ImageAcquisitionData |
MetadataFacility.getImageAcquisitionData(SecurityContext ctx,
long imageId)
Loads the
ImageAcquisitionData for a specific image |
Collection<ImageData> |
BrowseFacility.getImages(SecurityContext ctx,
Collection<Long> ids)
Loads the images with the given ids
|
Collection<ImageData> |
BrowseFacility.getImages(SecurityContext ctx,
Collection<Long> ids,
ParametersI params)
Loads the images with the given ids
|
Collection<ImageData> |
BrowseFacility.getImages(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the images for a particular user
|
Collection<ImageData> |
BrowseFacility.getImagesForDatasets(SecurityContext ctx,
Collection<Long> datasetIds)
Load all images belonging to particular datasets
|
Collection<ImageData> |
BrowseFacility.getImagesForProjects(SecurityContext ctx,
Collection<Long> projectIds)
Load all images belonging to particular projects
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx)
Loads all plates
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx,
Collection<Long> ids)
Loads the plates with the given ids
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx,
long ownerId)
Loads the plates for a particular user
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the plates with the given ids which belong to a particular user
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx)
Get all projects
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx,
Collection<Long> ids)
Get the projects for the given project ids
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx,
long ownerId)
Get the projects of a certain user
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Get the projects for the given project ids which belong to a certain user
|
int |
ROIFacility.getROICount(SecurityContext ctx,
long imageId)
Get the number of ROIs for an image (
-1
in case of error) |
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx)
Loads all screens
|
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx,
Collection<Long> ids)
Loads the screens with the given ids
|
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx,
long ownerId)
Loads the screens for a particular user
|
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the screens with the given ids which belong to a particular user
|
Collection<ImageData> |
BrowseFacility.getUserImages(SecurityContext ctx)
Loads all images of the logged in user
|
Collection<WellData> |
BrowseFacility.getWells(SecurityContext ctx,
long plateId)
Loads the wells for a given plate
|
ROIResult |
ROIFacility.loadROI(SecurityContext ctx,
long roiId)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIs(SecurityContext ctx,
long imageID)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIs(SecurityContext ctx,
long imageID,
List<Long> measurements)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIs(SecurityContext ctx,
long imageID,
List<Long> measurements,
long userID)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIsByPlane(SecurityContext ctx,
long imageID,
int z,
int t)
Loads the ROI related to the specified image.
|
ExperimenterData |
AdminFacility.lookupExperimenter(SecurityContext ctx,
String name)
Returns the experimenter corresponding to the passed name or
null . |
GroupData |
AdminFacility.lookupGroup(SecurityContext ctx,
String name)
Returns the group corresponding to the passed name or
null . |
DataObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
DataObject object)
Updates the specified object.
|
DataObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
DataObject object,
String userName)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object,
Map options)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object,
Map options,
String userName)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object,
String userName)
Updates the specified object.
|
List<omero.model.IObject> |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
List<omero.model.IObject> objects,
Map options,
String userName)
Updates the specified object.
|
Collection<ROIData> |
ROIFacility.saveROIs(SecurityContext ctx,
long imageID,
Collection<ROIData> roiList)
Save the ROI for the image to the server.
|
Collection<ROIData> |
ROIFacility.saveROIs(SecurityContext ctx,
long imageID,
long userID,
Collection<ROIData> roiList)
Save the ROI for the image to the server.
|
SearchResultCollection |
SearchFacility.search(SecurityContext ctx,
SearchParameters context)
Searches for data.
|
omero.model.IObject |
DataManagerFacility.updateObject(SecurityContext ctx,
omero.model.IObject object,
omero.sys.Parameters options)
Updates the specified object.
|
List<omero.model.IObject> |
DataManagerFacility.updateObjects(SecurityContext ctx,
List<omero.model.IObject> objects,
omero.sys.Parameters options)
Updates the specified
IObject s and returned the updated
IObject s. |
Modifier and Type | Method and Description |
---|---|
static TableResult |
PyTablesUtils.createTableResult(omero.grid.TablePrx table,
long[] rows)
Transforms a set of rows for the passed table.
|
static TableResult |
PyTablesUtils.createTableResult(omero.grid.TablePrx table,
String key,
long id)
Transforms the passed table data for a given image.
|
Version: 5.2.4-ice35-b23
Copyright © 2016 The University of Dundee & Open Microscopy Environment. All Rights Reserved.