| Package | Description |
|---|---|
| omero.gateway.facility | |
| omero.gateway.util |
| Modifier and Type | Method and Description |
|---|---|
void |
DataManagerFacility.addImagesToDataset(SecurityContext ctx,
Collection<ImageData> images,
DatasetData ds)
Adds the
ImageDatas to the given DatasetData |
void |
DataManagerFacility.addImageToDataset(SecurityContext ctx,
ImageData image,
DatasetData ds)
Adds the
ImageData to the given DatasetData |
<T extends AnnotationData> |
DataManagerFacility.attachAnnotation(SecurityContext ctx,
T annotation,
DataObject target)
Create/attach an
AnnotationData to a given DataObject |
DatasetData |
DataManagerFacility.createDataset(SecurityContext ctx,
DatasetData dataset,
ProjectData project)
Creates the
DatasetData on the server and attaches it
to the ProjectData (if not null) (if the
project doesn't exist on the server yet, it will be created, too) |
ExperimenterData |
AdminFacility.createExperimenter(SecurityContext ctx,
ExperimenterData exp,
String username,
String password,
List<GroupData> groups,
boolean isAdmin,
boolean isGroupOwner)
Creates an experimenter and returns it.
|
GroupData |
AdminFacility.createGroup(SecurityContext ctx,
GroupData groupData,
ExperimenterData owner,
int permissions)
Creates a group and returns it.
|
CmdCallbackI |
DataManagerFacility.delete(SecurityContext ctx,
omero.model.IObject object)
Deletes the specified object asynchronously
|
CmdCallbackI |
DataManagerFacility.delete(SecurityContext ctx,
List<omero.model.IObject> objects)
Deletes the specified objects asynchronously
|
omero.cmd.Response |
DataManagerFacility.deleteObject(SecurityContext ctx,
omero.model.IObject object)
Deprecated.
Use the asynchronous method
DataManagerFacility.delete(SecurityContext, IObject) instead |
omero.cmd.Response |
DataManagerFacility.deleteObjects(SecurityContext ctx,
List<omero.model.IObject> objects)
Deprecated.
Use the asynchronous method
DataManagerFacility.delete(SecurityContext, List) instead |
List<File> |
TransferFacility.downloadImage(SecurityContext context,
String targetPath,
long imageId)
Downloads the original file of an image from the server.
|
omero.model.IObject |
BrowseFacility.findIObject(SecurityContext ctx,
omero.model.IObject o)
Retrieves an updated version of the specified object.
|
omero.model.IObject |
BrowseFacility.findIObject(SecurityContext ctx,
String klassName,
long id)
Retrieves an updated version of the specified object.
|
omero.model.IObject |
BrowseFacility.findIObject(SecurityContext ctx,
String klassName,
long id,
boolean allGroups)
Retrieves an updated version of the specified object.
|
<T extends DataObject> |
BrowseFacility.findObject(SecurityContext ctx,
Class<T> klass,
long id)
Retrieves an updated version of the specified object.
|
<T extends DataObject> |
BrowseFacility.findObject(SecurityContext ctx,
Class<T> klass,
long id,
boolean allGroups)
Retrieves an updated version of the specified object.
|
DataObject |
BrowseFacility.findObject(SecurityContext ctx,
String pojoName,
long id)
Retrieves an updated version of the specified object.
|
DataObject |
BrowseFacility.findObject(SecurityContext ctx,
String pojoName,
long id,
boolean allGroups)
Retrieves an updated version of the specified object.
|
List<AnnotationData> |
MetadataFacility.getAnnotations(SecurityContext ctx,
DataObject object)
Get all annotations for the given
DataObject |
List<AnnotationData> |
MetadataFacility.getAnnotations(SecurityContext ctx,
DataObject object,
List<Class<? extends AnnotationData>> annotationTypes,
List<Long> userIds)
Get the annotations for the given
DataObject |
Map<DataObject,List<AnnotationData>> |
MetadataFacility.getAnnotations(SecurityContext ctx,
List<? extends DataObject> objects,
List<Class<? extends AnnotationData>> annotationTypes,
List<Long> userIds)
Get the annotations for the given
DataObjects |
Set<GroupData> |
BrowseFacility.getAvailableGroups(SecurityContext ctx,
ExperimenterData user)
Retrieves the groups visible by the current experimenter.
|
List<ChannelData> |
MetadataFacility.getChannelData(SecurityContext ctx,
long imageId)
Get the
ChannelData for a specific image |
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx)
Loads all datasets
|
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx,
Collection<Long> ids)
Loads the datasets with the given ids
|
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx,
long ownerId)
Loads the datasets for a particular user
|
Collection<DatasetData> |
BrowseFacility.getDatasets(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the datasets with the given ids which belong to a particular user
|
Collection<DataObject> |
BrowseFacility.getHierarchy(SecurityContext ctx,
Class rootType,
List<Long> rootIDs,
omero.sys.Parameters options)
Retrieves hierarchy trees rooted by a given node.
|
Collection<DataObject> |
BrowseFacility.getHierarchy(SecurityContext ctx,
Class rootType,
long userId)
Retrieves hierarchy trees rooted by a given node.
|
ImageData |
BrowseFacility.getImage(SecurityContext ctx,
long id)
Loads a image
|
ImageData |
BrowseFacility.getImage(SecurityContext ctx,
long id,
ParametersI params)
Loads a image
|
ImageAcquisitionData |
MetadataFacility.getImageAcquisitionData(SecurityContext ctx,
long imageId)
Loads the
ImageAcquisitionData for a specific image |
Collection<ImageData> |
BrowseFacility.getImages(SecurityContext ctx,
Collection<Long> ids)
Loads the images with the given ids
|
Collection<ImageData> |
BrowseFacility.getImages(SecurityContext ctx,
Collection<Long> ids,
ParametersI params)
Loads the images with the given ids
|
Collection<ImageData> |
BrowseFacility.getImages(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the images for a particular user
|
Collection<ImageData> |
BrowseFacility.getImagesForDatasets(SecurityContext ctx,
Collection<Long> datasetIds)
Load all images belonging to particular datasets
|
Collection<ImageData> |
BrowseFacility.getImagesForProjects(SecurityContext ctx,
Collection<Long> projectIds)
Load all images belonging to particular projects
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx)
Loads all plates
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx,
Collection<Long> ids)
Loads the plates with the given ids
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx,
long ownerId)
Loads the plates for a particular user
|
Collection<PlateData> |
BrowseFacility.getPlates(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the plates with the given ids which belong to a particular user
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx)
Get all projects
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx,
Collection<Long> ids)
Get the projects for the given project ids
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx,
long ownerId)
Get the projects of a certain user
|
Collection<ProjectData> |
BrowseFacility.getProjects(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Get the projects for the given project ids which belong to a certain user
|
int |
ROIFacility.getROICount(SecurityContext ctx,
long imageId)
Get the number of ROIs for an image (
-1
in case of error) |
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx)
Loads all screens
|
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx,
Collection<Long> ids)
Loads the screens with the given ids
|
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx,
long ownerId)
Loads the screens for a particular user
|
Collection<ScreenData> |
BrowseFacility.getScreens(SecurityContext ctx,
long ownerId,
Collection<Long> ids)
Loads the screens with the given ids which belong to a particular user
|
Collection<ImageData> |
BrowseFacility.getUserImages(SecurityContext ctx)
Loads all images of the logged in user
|
Collection<WellData> |
BrowseFacility.getWells(SecurityContext ctx,
long plateId)
Loads the wells for a given plate
|
ROIResult |
ROIFacility.loadROI(SecurityContext ctx,
long roiId)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIs(SecurityContext ctx,
long imageID)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIs(SecurityContext ctx,
long imageID,
List<Long> measurements)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIs(SecurityContext ctx,
long imageID,
List<Long> measurements,
long userID)
Loads the ROI related to the specified image.
|
List<ROIResult> |
ROIFacility.loadROIsByPlane(SecurityContext ctx,
long imageID,
int z,
int t)
Loads the ROI related to the specified image.
|
ExperimenterData |
AdminFacility.lookupExperimenter(SecurityContext ctx,
String name)
Returns the experimenter corresponding to the passed name or
null. |
GroupData |
AdminFacility.lookupGroup(SecurityContext ctx,
String name)
Returns the group corresponding to the passed name or
null. |
DataObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
DataObject object)
Updates the specified object.
|
DataObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
DataObject object,
String userName)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object,
Map options)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object,
Map options,
String userName)
Updates the specified object.
|
omero.model.IObject |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
omero.model.IObject object,
String userName)
Updates the specified object.
|
List<omero.model.IObject> |
DataManagerFacility.saveAndReturnObject(SecurityContext ctx,
List<omero.model.IObject> objects,
Map options,
String userName)
Updates the specified object.
|
Collection<ROIData> |
ROIFacility.saveROIs(SecurityContext ctx,
long imageID,
Collection<ROIData> roiList)
Save the ROI for the image to the server.
|
Collection<ROIData> |
ROIFacility.saveROIs(SecurityContext ctx,
long imageID,
long userID,
Collection<ROIData> roiList)
Save the ROI for the image to the server.
|
SearchResultCollection |
SearchFacility.search(SecurityContext ctx,
SearchParameters context)
Searches for data.
|
omero.model.IObject |
DataManagerFacility.updateObject(SecurityContext ctx,
omero.model.IObject object,
omero.sys.Parameters options)
Updates the specified object.
|
List<omero.model.IObject> |
DataManagerFacility.updateObjects(SecurityContext ctx,
List<omero.model.IObject> objects,
omero.sys.Parameters options)
Updates the specified
IObjects and returned the updated
IObjects. |
| Modifier and Type | Method and Description |
|---|---|
static TableResult |
PyTablesUtils.createTableResult(omero.grid.TablePrx table,
long[] rows)
Transforms a set of rows for the passed table.
|
static TableResult |
PyTablesUtils.createTableResult(omero.grid.TablePrx table,
String key,
long id)
Transforms the passed table data for a given image.
|
Version: 5.2.4-ice35-b23
Copyright © 2016 The University of Dundee & Open Microscopy Environment. All Rights Reserved.