Deprecated API

Contents

• Deprecated Interfaces
• Deprecated Classes
• Deprecated Exceptions
• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors

Deprecated Interfaces

Interface and Description
omero.cmd.graphs.IGraphModifyRequest will be removed in OMERO 5.3, so use the new graphs implementation

Deprecated Classes

Class and Description
omero.cmd.graphs.ChgrpFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.ChmodFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.ChownFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
omero.cmd.graphs.DeleteFacadeI will be removed in OMERO 5.3, so use the new graphs implementation
ome.services.graphs.GraphOpts will be removed in OMERO 5.3, so use the new graphs implementation

Deprecated Exceptions

Exceptions and Description
ome.services.delete.DeleteException will be removed in OMERO 5.3

Deprecated Fields

Field and Description
ome.formats.importer.ImportConfig.targetClass
ome.formats.importer.ImportConfig.targetId

Deprecated Methods

Method and Description
ome.services.blitz.impl.ServiceFactoryI.close(Current)
omero.cmd.graphs.GraphUtil.combineFacadeRequests(List<Request>) because facade classes are deprecated
ome.logic.LdapImpl.createUserFromLdap(String, String)
omero.gateway.facility.DataManagerFacility.deleteObject(SecurityContext, IObject) Use the asynchronous method DataManagerFacility.delete(SecurityContext, IObject) instead
omero.gateway.facility.DataManagerFacility.deleteObjects(SecurityContext, List<IObject>) Use the asynchronous method DataManagerFacility.delete(SecurityContext, List) instead
omero.gateway.model.ImageAcquisitionData.getAirPressure() Replaced by ImageAcquisitionData.getAirPressure(UnitsPressure)
ome.system.ServiceFactory.getContext()
omero.gateway.model.FilterData.getCutIn() Replaced by FilterData.getCutIn(UnitsLength)
omero.gateway.model.FilterData.getCutInTolerance() Replaced by FilterData.getCutInTolerance(UnitsLength)
omero.gateway.model.FilterData.getCutOut() Replaced by FilterData.getCutOut(UnitsLength)
omero.gateway.model.FilterData.getCutOutTolerance() Replaced by FilterData.getCutOutTolerance(UnitsLength)
ome.formats.OMEROMetadataStoreClient.getDefaultGroupLevel()
omero.gateway.model.ChannelAcquisitionData.getDetectorSettingsReadOutRate() Replaced by ChannelAcquisitionData.getDetectorSettingsReadOutRate(UnitsFrequency)
omero.gateway.model.ChannelAcquisitionData.getDetectorSettingsVoltage() Replaced by ChannelAcquisitionData.getDetectorSettingsVoltage(UnitsElectricPotential)
omero.gateway.model.ChannelData.getEmissionWavelength() Replaced by ChannelData.getEmissionWavelength(UnitsLength)
omero.gateway.model.ChannelData.getExcitationWavelength() Replaced by ChannelData.getExcitationWavelength(UnitsLength)
omero.gateway.model.ShapeSettingsData.getFontSize() Replaced by ShapeSettingsData.getFontSize(UnitsLength)
omero.gateway.model.LightSourceData.getLaserRepetitionRate() Replaced by LightSourceData.getLaserRepetitionRate(UnitsFrequency)
omero.gateway.model.LightSourceData.getLaserWavelength() Replaced by LightSourceData.getLaserWavelength(UnitsLength)
omero.gateway.model.ChannelAcquisitionData.getLightSettingsWavelength() Replaced by ChannelAcquisitionData.getLightSettingsWavelength(UnitsLength)
omero.gateway.model.PolylineData.getMaskPoints()
omero.gateway.model.ChannelData.getPinholeSize() Replaced by ChannelData.getPinholeSize(UnitsLength)
ome.io.nio.PixelsService.getPixelBuffer(Pixels) In the future callers should use the more descriptive PixelsService.getPixelBuffer(Pixels, boolean).
omero.gateway.model.PixelsData.getPixelSizeX() Replaced by PixelsData.getPixelSizeX(UnitsLength)
omero.gateway.model.PixelsData.getPixelSizeY() Replaced by PixelsData.getPixelSizeY(UnitsLength)
omero.gateway.model.PixelsData.getPixelSizeZ() Replaced by PixelsData.getPixelSizeZ(UnitsLength)
omero.gateway.model.PolygonData.getPoints1()
omero.gateway.model.PolylineData.getPoints1()
omero.gateway.model.PolygonData.getPoints2()
omero.gateway.model.PolylineData.getPoints2()
omero.gateway.model.ImageAcquisitionData.getPositionX() Replaced by ImageAcquisitionData.getPositionX(UnitsLength)
omero.gateway.model.WellSampleData.getPositionX() Replaced by WellSampleData.getPositionX(UnitsLength)
omero.gateway.model.ImageAcquisitionData.getPositionY() Replaced by ImageAcquisitionData.getPositionY(UnitsLength)
omero.gateway.model.WellSampleData.getPositionY() Replaced by WellSampleData.getPositionY(UnitsLength)
omero.gateway.model.ImageAcquisitionData.getPositionZ() Replaced by ImageAcquisitionData.getPositionZ(UnitsLength)
omero.gateway.model.LightSourceData.getPower() Replaced by LightSourceData.getPower(UnitsPower)
omero.client.getServiceFactory() use client.getSession() instead, to be removed in 5.3
omero.gateway.model.ShapeSettingsData.getStrokeWidth() Replaced by ShapeSettingsData.getStrokeWidth(UnitsLength)
omero.gateway.model.ImageAcquisitionData.getTemperature() Replaced by ImageAcquisitionData.getTemperature(UnitsTemperature)
ome.logic.RepositoryInfoImpl.getUsageFraction()
ome.logic.RepositoryInfoImpl.getUsedSpaceInKilobytes()
omero.gateway.model.DetectorData.getVoltage() Replaced by DetectorData.getVoltage(UnitsElectricPotential)
omero.gateway.model.PlateData.getWellOriginX() Replaced by PlateData.getWellOriginX(UnitsLength)
omero.gateway.model.PlateData.getWellOriginY() Replaced by PlateData.getWellOriginY(UnitsLength)
omero.gateway.model.ObjectiveData.getWorkingDistance() Replaced by ObjectiveData.getWorkingDistance(UnitsLength)
ome.services.blitz.impl.ProcessorCallbackI.isAccepted(boolean, String, String, Current)
omero.gateway.facility.BrowseFacility.loadHierarchy(SecurityContext, Class, List<Long>, Parameters) Please use the more generic method BrowseFacility.getHierarchy(SecurityContext, Class, long)
omero.gateway.facility.BrowseFacility.loadHierarchy(SecurityContext, Class, long) Please use the more generic method BrowseFacility.getHierarchy(SecurityContext, Class, List, Parameters)
ome.logic.LdapImpl.loadLdapGroups(String, DistinguishedName)
omero.sys.ParametersI.map() use ParametersI.map() instead, to be removed in 5.3
ome.services.blitz.repo.PublicRepositoryI.persistLogFile(OriginalFile, Current)
ome.api.IAdmin.reportForgottenPassword(String, String)
omero.gateway.model.ImageAcquisitionData.setAirPressure(double) Replaced by ImageAcquisitionData.setAirPressure(Pressure)
omero.gateway.model.ChannelAcquisitionData.setDetectorSettingsReadOutRate(double) Replaced by ChannelAcquisitionData.setDetectorSettingsReadOutRate(Frequency)
omero.gateway.model.ChannelAcquisitionData.setDetectorSettingsVoltage(double) Replaced by ChannelAcquisitionData.setDetectorSettingsVoltage(ElectricPotential)
ome.api.ILdap.setDN(Long, String) As of release 5.1, relevant model objects have the "ldap" property added to their state.
ome.logic.LdapImpl.setDN(Long, String)
omero.gateway.model.ChannelData.setEmissionWavelength(double) Replaced by ChannelData.setEmissionWavelength(Length)
omero.gateway.model.ChannelData.setExcitationWavelength(double) Replaced by ChannelData.setExcitationWavelength(Length)
omero.gateway.model.ShapeSettingsData.setFontSize(int) Replaced by ShapeSettingsData.setFontSize(Length)
omero.gateway.model.ChannelAcquisitionData.setLightSettingsWavelength(double) Replaced by ChannelAcquisitionData.setLightSettingsWavelength(Length)
ome.services.RenderingBean.setOverlays(Map<byte[], Integer>) As of release 5.1.0, replaced by PlaneDef.setShapeIds(List).
omero.gateway.model.ChannelData.setPinholeSize(double) Replaced by ChannelData.setPinholeSize(Length)
omero.gateway.model.PixelsData.setPixelSizeX(double) Replaced by PixelsData.setPixelSizeX(Length)
omero.gateway.model.PixelsData.setPixelSizeY(double) Replaced by PixelsData.setPixelSizeY(Length)
omero.gateway.model.PixelsData.setPixelSizeZ(double) Replaced by PixelsData.setPixelSizeZ(Length)
omero.gateway.model.PolygonData.setPoints(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
omero.gateway.model.PolylineData.setPoints(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
omero.gateway.model.ImageAcquisitionData.setPositionX(double) Replaced by ImageAcquisitionData.setPositionX(Length)
omero.gateway.model.ImageAcquisitionData.setPositionY(double) Replaced by ImageAcquisitionData.setPositionY(Length)
omero.gateway.model.ImageAcquisitionData.setPositionZ(double) Replaced by ImageAcquisitionData.setPositionZ(Length)
omero.gateway.model.ShapeSettingsData.setStrokeWidth(Double) Replaced by ShapeSettingsData.setStrokeWidth(Length)
omero.gateway.model.ImageAcquisitionData.setTemperature(double) Replaced by ImageAcquisitionData.setTemperature(Temperature)

Deprecated Constructors

Constructor and Description
ome.model.units.ElectricPotential()
ome.model.units.Frequency()
ome.model.units.Length()
ome.model.internal.NamedValue()
omero.gateway.model.PolygonData(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
omero.gateway.model.PolylineData(List<Point2D.Double>, List<Point2D.Double>, List<Point2D.Double>, List<Integer>)
ome.model.units.Power()
ome.model.units.Pressure()
ome.model.units.Temperature()
ome.model.units.Time()